AlfalfaGEDB | MS.gene65735

M. sativa cultivar XinJiangDaYe / MS.gene65735

KEGG: -
GO: -
PFAM: PF13369.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65735.t1	XP_003598518.1	97.6	409	10	0	2	410	7	415	1.60E-229	805.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65735.t1	G7J0K8	97.6	409	10	0	2	410	7	415	1.2e-229	805.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene65735	0.813469	2.52E-51	-1.69E-46
MS.gene049222	MS.gene65735	0.840008	1.13E-57	-1.69E-46
MS.gene049285	MS.gene65735	0.802731	4.88E-49	-1.69E-46
MS.gene049320	MS.gene65735	0.805738	1.15E-49	-1.69E-46
MS.gene049609	MS.gene65735	0.808953	2.40E-50	-1.69E-46
MS.gene049633	MS.gene65735	0.815921	7.21E-52	-1.69E-46
MS.gene050170	MS.gene65735	0.807833	4.17E-50	-1.69E-46
MS.gene050504	MS.gene65735	0.809132	2.20E-50	-1.69E-46
MS.gene050518	MS.gene65735	0.806755	7.05E-50	-1.69E-46
MS.gene050538	MS.gene65735	0.852942	3.31E-61	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65735.t1	MTR_3g014680	97.555	409	10	0	2	410	7	415	0.0	829

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 81 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAAGGAGGGCAAAAT+TGG	0.270665	3.2:+7569234	None:intergenic
AAACCAGCATTTGCATTAAC+AGG	0.320884	3.2:-7568020	MS.gene65735:CDS
AACCTCATCCAGTTGGAGCA+AGG	0.588007	3.2:-7564027	MS.gene65735:CDS
AAGAACCAGTGCAAATCTAT+TGG	0.400814	3.2:-7565976	MS.gene65735:CDS
AAGATTAGATGATCTTTCAA+TGG	0.495549	3.2:-7567899	MS.gene65735:CDS
AAGCACACATAATGACATCA+GGG	0.674877	3.2:-7565659	MS.gene65735:CDS
AATGACATCAGGGAATCTAT+TGG	0.474691	3.2:-7565649	MS.gene65735:CDS
AATGAGCAGGAAGCCAGGGA+AGG	0.640830	3.2:-7568084	MS.gene65735:intron
ACAAAAGCATCGACAGGAAA+TGG	0.377715	3.2:+7567925	None:intergenic
ACAAGCACTCTATCTTCACT+CGG	0.662211	3.2:-7565949	MS.gene65735:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAAAATCCACCATTAC+AGG	+	chr3.2:7564082-7564101	None:intergenic	30.0%
AAACTCTCATAATGCCAAAA+AGG	-	chr3.2:7566106-7566125	MS.gene65735:intron	30.0%
AACTCTCATAATGCCAAAAA+GGG	-	chr3.2:7566107-7566126	MS.gene65735:intron	30.0%
AATACCATTCTTATCACTTC+AGG	-	chr3.2:7566346-7566365	MS.gene65735:intron	30.0%
AGAACTCACAATAATTTACG+TGG	-	chr3.2:7567837-7567856	MS.gene65735:CDS	30.0%
ATAACTCAATCCTACAAAAC+CGG	-	chr3.2:7567593-7567612	MS.gene65735:intron	30.0%
ATGAGTTCTGCAAAAATGAA+TGG	+	chr3.2:7568908-7568927	None:intergenic	30.0%
CAATCTTACATGTAAAAACG+AGG	-	chr3.2:7569261-7569280	MS.gene65735:CDS	30.0%
CAGTTAGAAGTAGTTCATAA+CGG	-	chr3.2:7566612-7566631	MS.gene65735:intron	30.0%
CTAAATTGTAATTGAGGTTG+AGG	-	chr3.2:7564651-7564670	MS.gene65735:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	7563754	7569303	7563754	ID=MS.gene65735
chr3.2	mRNA	7563754	7569303	7563754	ID=MS.gene65735.t1;Parent=MS.gene65735
chr3.2	exon	7569112	7569303	7569112	ID=MS.gene65735.t1.exon1;Parent=MS.gene65735.t1
chr3.2	CDS	7569112	7569303	7569112	ID=cds.MS.gene65735.t1;Parent=MS.gene65735.t1
chr3.2	exon	7567813	7568097	7567813	ID=MS.gene65735.t1.exon2;Parent=MS.gene65735.t1
chr3.2	CDS	7567813	7568097	7567813	ID=cds.MS.gene65735.t1;Parent=MS.gene65735.t1
chr3.2	exon	7565950	7566006	7565950	ID=MS.gene65735.t1.exon3;Parent=MS.gene65735.t1
chr3.2	CDS	7565950	7566006	7565950	ID=cds.MS.gene65735.t1;Parent=MS.gene65735.t1
chr3.2	exon	7565644	7565853	7565644	ID=MS.gene65735.t1.exon4;Parent=MS.gene65735.t1
chr3.2	CDS	7565644	7565853	7565644	ID=cds.MS.gene65735.t1;Parent=MS.gene65735.t1
chr3.2	exon	7564806	7564924	7564806	ID=MS.gene65735.t1.exon5;Parent=MS.gene65735.t1
chr3.2	CDS	7564806	7564924	7564806	ID=cds.MS.gene65735.t1;Parent=MS.gene65735.t1
chr3.2	exon	7564620	7564717	7564620	ID=MS.gene65735.t1.exon6;Parent=MS.gene65735.t1
chr3.2	CDS	7564620	7564717	7564620	ID=cds.MS.gene65735.t1;Parent=MS.gene65735.t1
chr3.2	exon	7564386	7564510	7564386	ID=MS.gene65735.t1.exon7;Parent=MS.gene65735.t1
chr3.2	CDS	7564386	7564510	7564386	ID=cds.MS.gene65735.t1;Parent=MS.gene65735.t1
chr3.2	exon	7563992	7564136	7563992	ID=MS.gene65735.t1.exon8;Parent=MS.gene65735.t1
chr3.2	CDS	7563992	7564136	7563992	ID=cds.MS.gene65735.t1;Parent=MS.gene65735.t1
chr3.2	exon	7563754	7563824	7563754	ID=MS.gene65735.t1.exon9;Parent=MS.gene65735.t1
chr3.2	CDS	7563754	7563824	7563754	ID=cds.MS.gene65735.t1;Parent=MS.gene65735.t1

Gene Sequence

>MS.gene65735

ATGTCTTCTCTTCCCACAACCTCTTTCTTCTCTACATTCTCCAAATTCCAATTTTGCCCTCCTTCATTTTCTTATTCATCCCCTCGTGTGATATGTCATGGAGGCTCCAACGTTCAACACGCGGCAACTGACCTCAAGTTCTTCTTGCATGATGCTCTTGATGCTTCTGGAATTGATACTGCTCATGCCAGAGTAAAAAACTCATGTCTTGATTCTTCAAATTTTAAGATTGTTTTTGGTTTAATGAATTGTTTTATTTGTTTAATTTGGATGTTTTGATTTAATTCATGTTAAATGAAGCTTGGAAACATGTAGAATTTGTCATCCTGTAATGGTGGATTTTTGTTTTTTAAGCTGAAACATAACACTAACACAGGGACACTGACACGTCGACACCGATAATAATTTGAGAAAATGACATGATAATTCAGTGTAATCATATGCGTAGATTTGAATTCATTTCTAGTTATGAACATTGGACACACCTTTGATCATAAGTGTCATCACATGTCAAACACCAGATACACCTTTAATCTCAAGTGTCAGTGCTTCAGAGATTCGATTTATTGAAAAAAGGGCAATTTAATATAGTATAATGCATTTAAGATGGTGATAGTATGTTACCTTTGGACGAAAATTTGTTTTGTCCTGATTTGCTTGGTTTTCTGTAGTGGGTGTATTACAGGTTATGAGTTTCCTTATTCCATTTTTTGTTTAAACTTTTTTTTCTTTTCAAAATGTTTGATTCATGAAGGAAATGTGTTTACTCTGATTAGTTATGGTACATGTTTGAAAAATGGACTTAATGGCCTCAAGTGATCCAAATAGAGAAAAGACTTGTTTGTTGATGTTATTGATGGATTCTTTAGTTTGTCGTGTTAATTACAATCAATAGTTCTAAATTGTAATTGAGGTTGAGGATATGTTGCAAATCTTGATATTGAGGAAAAATGTGGGCAATTATGGCCAATGGAGCCGTACTTGCGTTGCGATGTCATTGCAAAAACCTCTAAAACTGTTATATTGCGGCCACAATTTATGCTGCAAACCGCAATTTAGAACTATTCACACACCTGCAGCTTGGTGTGATGGAAGATGGTTAATCTATATGCTTTTGAAATTTACAAGTTTTCATTTGGTTCTGAACTTCAGGATTCGATACTGAATAATCTTAATTTGTTGAGTGGTTGATTTATGAATGAGCAGGAAGCCAGGGAAGGATTCTGTTCACAAATTAAGAGACTTACTGATATTGAGAAAGAAACCAGCATTTGCATTAACAGGCATGTTGATTTGGGCAGAACTGCTCTCTATATAGCTGCAGAAGATGATTCTCTGGTATCACATTCATCGGTTCCATTTCCTGTCGATGCTTTTGTTGCAAGATTAGATGATCTTTCAATGGACTACTGTCCTCACTACACCCCTTCATATGATTCATCGCCGGAGAAGTTTTTAGAGAGCATAGAAAGATTTTTGTATGTTCACAAGGTATGTAATTTGATTTCATATTCGTAGCTGTATTCTTGTTTCGTTTTGTCTAGAGTCTAACATTGCATAAGATATGCCCTGAAAATGAGTTACAAACGGGAAACATATTTCACCTTACAAGTCAATTTTGTATGATTGAGATTGGCCCAACCTAAATTTAAGATGATATCAGAACCTATCCAAGATGTACTGGGGCCACCTGTTATCAGGCTTCCTCTAGCCACACGCTCTAAATCTCACAGTCCTGCGTGAAGGGGTGAGTGTGTTTAGAGTGCACATTGAATGAGATATGCTAACCCAAATTTTAAGACATTTGATTGTGATGTCTGTATTAAGTATTAACCACAAAAGGATTTTGAATTCTGAAGCATTATTTTAGGATACAGATGTTAAGTATCCATATGTTCCTCTAATTGTTTCTTGAGGCTCAAACAGTAACAATTAGGTTCACTTTAGGTTTAAAATTTTAACAAGTGATCAAATTTGTGTAGTTTAGCTGTAAGTCAAATATGTGAATGAGAGAATTCATAAATTGAATTCTAAAAAAATGTTCGAAGAAATTGTAATTGTGTTCTGTTGACTTTTAATAAATTCTCTTTACTTATTGACACGTAATCACAGAGATACCAATAATAATTAAAATGTGATTGAATAGAACTACAAGTGTCACTGTCCGACGTTGATGTGTGTCAGACCCCAGACACACCTTCAATCAGAAGTTTCGGTGGTACATAGTTCCTCGGCAATGTTTGCACCATCCTAGTCTCCTTATATTGTGATCTTTCAATGCCAAGTTGATAAGATTATAGGTAGATATTTTGAAGACTAGTTACTTCAATTACGAGCAGACCTCTATGCACAAAACTCTCATAATGCCAAAAAGGGAAAAGTAAAATGAAGGATAACAATAGTGTCTTTAAATAGAGACAGAGAATCCCCACCTGGTTCCATACCTCTTCAAATCATATCAATTCTACTATCCTATTTCTCACTCACTTGTTTCTTCCTCCTAACATAAAATTTGGCAAGCAGCGTTTCAATAATCTTCTTAGAACTACACTAGATTTCATATTTTACAAGTATTTTCACAGCATTCGTTATAATACCATTCTTATCACTTCAGGAGCAAGGGGTAAGATTCTTATGAAATCAATCTTTAAAGTAATAATTTAAATGTGTTGTGCTACTATTTTGACCTTGTTAAAATAATAGGGTTTTAGACGAGGAGGGAACAGAAAAAAGGAATTGATATATATCATATAAATGCTTAATGTATGTTGCATGTTCTAGGAATGTGTGCCTATAACACACAAAACTATACTAATAGAACTCGCCGCTTCTTTTGAGAAATGGAGATGATCTCTACTCAGTTAGAAGTAGTTCATAACGGCAGCCGACTAAGGTTGGCCCAAAACTTTATTTTGGTATGTAGTTAATTAGGAAACTTATTATTAAAAGTAATGAAGAGCAGATTTTGGATGTTCTTGAAATTCAGAAACCTAGTGCATTGATTATGCTTTGAGTTTCTATTCTTTTCTTCTAATTAATAAAGTCTTGGTGACGTGGTGAGAGCAAGTAAACGTGTGTTGAGTGTGAAGATACGAGTAGTAGCTTTTGGATGGATGTACCATGGAAACTGGAAACTGGTGTTTTTACAAACACGTATGTAATGTGCCAGCTGGCTGCAGAAACTAGATAAACAGAATATGTAATTATAGAATGTATATTCTAGAATAGATTTTCATCAATTTTCACCACATGTAATTTGTAAATAGATTAACTATTTCAAACCTCTGGCCGCAACAGGGTTTCAGAAGAACCAGTGCAAATCTATTGGAGCCACAAGCACTCTATCTTCACTCGGTAATATATTCCACATGTTTAATTTCTTTTTGAAAAGAAATTTATGAGTATGCAAGTGGTAGACATTTGATAGATTTACTTTAATGAATCGAGCAGGTTTTGACTCATCGTTCAGGATCACCTGCAATGCTGTCACTTATATACTCAGAAATTCTGAAAATGCTTCGTTTATGGGGCCTTTTGTATTTTGATGCTGAAATTTTCTACCCTCGTGATATTTTTAATGTTCCTAAAGGCTATCATAAGCTGAAAAGCAAGGAATCAGACCAAGCACACATAATGACATCAGGGAATCTATTGGTTGAGGTAACATCTTATTACTTGCTCTTCTTTCATTTCCACTATCTGGTATCTTCTCAACTAAAATACCAAATTATGTGTACATTTTTTCTAGTTTTGGCATAAAATGTGCATCTGTGCCATAAGAAGTATAAGTGCTCCCGATCAAGCATTGTTGTTGAGTGACTCTTAAAATTTGGGTGGACATAACTCAATCCTACAAAACCGGTTTATAAGATGAGGGAGTCTTCTACAATGTGCAATTCTAAGCACATCCTTCACGCTCAGGACTGGACATTTAGAGTTTGACTCGATGACCCAACGGGTCTTGCCATCTTAAAAATTGGGTTGAGCCTAACTCAACCCTACAAAACCGACTGGTAAGATAAGGGATTCTTAGCTGTGACCGTATTTCACACCTAGGATCTTAGTGGAAAACAAACACCACATAGAACTCACAATAATTTACGTGGTTCGGGACCTCTTGCCTTCGTCCACAGGAGCATGCACCTTGGTTTATTAATTAGGATAATTGTAACTATTATTAATTAGGATAATAAATTGCAGAATCAATGTTTATATGACAGTTGCAGAATCAGCCTCACAGCTTGTAAGTAAATTGTATTTATATGAGAATATTCCAAGAGGATAACAATGTTATCAAACCTCTGAGTTTCATAATATATTCTGCCATATTAAGCTGTTTTAGTTTTCCTTTAGCACTCATGTTAAGTCTATATCTGCAGATATTAAATAATCTGAAGCATGCATTCTGGCCTTTTCATCATGATCATACAAAAACCTTATTTTTAAGGGCAGCACATGCTGCAAACTGTGTTGACAGATCTGATTTTGTTGGAGAAAGGTACTTTTTATTTTGTCTTTCCTATTTTCTATTTATTTTAATGTAATTAGTTTATGTAAGAAATTGTCTTAAAGTTTGTCAACGGCAGTGGCTCTCAAATTGCTTCAGCTAAGGCTGCTCAACATAGACTGGATCGAGGTGTTTGGACCACTGTGCGCTTTGGCGACATGAGGCATTCATTGTCTGGTATGAATCTGTGATCCAGTTTACCTCTCTTTTTTCTCAATACTGTAATGCCTTTGTCAAACTTTCTGATATTTCATTACGATCACAAATATTTCGCCTATTCTTTCAGCATGTGAACGCCTTATCCTCGTTACAAATGATCCAAATGAGCTAAGAGATTACAGCATTCTCCTCTATCATTGTGGATTATACGAGGAGTCGCTACAATACCTGACGAAGTACCAGGAACAAAAGGTACTATAACAATCCTATACAATGCATGAATGATATATTTTTTCCAGATTTGGATCATGTGCAGTAACTGCATCATGTAGTTTTCAATTTCTATCAAAAACCAAGATTGTTTAAAGCGAATCCTATGTAATTTGATTCATCCGAGATCGCTTACTGCGTGAAATGTCGTGGAAATACTACTGCTGCAGGATATCCTGGTCCCTTCTTTCCAAATAAACTGAATGTTATGTGCACCATTCATTTTTGCAGAACTCATCTACACAAGTGCTGACATCATCAGACTCTGAAAGTGACATGGAAGAAGATGCTGCCGTCGATAAACTAATAACGCGATTGAACCTCATCCAGTTGGAGCAAGGATGGAGTCAGCCGTCCGTTGCTAGAAAGTTTCTTGGTAATAACTCTGATCCATGGTAGTTCCTCTTTCGTTTCAATCGCGACAACATCAACAAAGAATTTTGGTCGGCTGATAGTTGAAATGAAAGCTAATAGTTCATGGCGGCAAGTTTTGCTGTGTTTTCTGGACACAGCATTAGACTTTTGGGATATATGATGCTGTAGTCGTTCCAAATAGCTTGCAAGCTCTGTACAATCTTACATGTAAAAACGAGGTTTTGCAACTTCTGAAGTGA

Protein sequence

>MS.gene65735.t1

MSSLPTTSFFSTFSKFQFCPPSFSYSSPRVICHGGSNVQHAATDLKFFLHDALDASGIDTAHAREAREGFCSQIKRLTDIEKETSICINRHVDLGRTALYIAAEDDSLVSHSSVPFPVDAFVARLDDLSMDYCPHYTPSYDSSPEKFLESIERFLYVHKGFRRTSANLLEPQALYLHSVLTHRSGSPAMLSLIYSEILKMLRLWGLLYFDAEIFYPRDIFNVPKGYHKLKSKESDQAHIMTSGNLLVEILNNLKHAFWPFHHDHTKTLFLRAAHAANCVDRSDFVGESGSQIASAKAAQHRLDRGVWTTVRFGDMRHSLSACERLILVTNDPNELRDYSILLYHCGLYEESLQYLTKYQEQKNSSTQVLTSSDSESDMEEDAAVDKLITRLNLIQLEQGWSQPSVARKFLVVPNSLQALYNLTCKNEVLQLLK