Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74869.t1 | RHN80567.1 | 47.5 | 160 | 15 | 1 | 34 | 124 | 177 | 336 | 6.20E-28 | 134 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74869.t1 | G7I5L1 | 47.5 | 160 | 15 | 1 | 34 | 124 | 213 | 372 | 4.5e-28 | 134.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene74869 | 0.84073 | 7.29E-58 | -1.69E-46 |
| MS.gene049271 | MS.gene74869 | 0.820582 | 6.36E-53 | -1.69E-46 |
| MS.gene049404 | MS.gene74869 | 0.805593 | 1.24E-49 | -1.69E-46 |
| MS.gene049666 | MS.gene74869 | 0.8311 | 2.02E-55 | -1.69E-46 |
| MS.gene049821 | MS.gene74869 | 0.811216 | 7.82E-51 | -1.69E-46 |
| MS.gene049824 | MS.gene74869 | 0.831946 | 1.25E-55 | -1.69E-46 |
| MS.gene049825 | MS.gene74869 | 0.847424 | 1.17E-59 | -1.69E-46 |
| MS.gene049873 | MS.gene74869 | 0.840904 | 6.56E-58 | -1.69E-46 |
| MS.gene049977 | MS.gene74869 | 0.80168 | 8.03E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene74869 | 0.822816 | 1.93E-53 | -1.69E-46 |
| MS.gene050201 | MS.gene74869 | 0.830814 | 2.38E-55 | -1.69E-46 |
| MS.gene050355 | MS.gene74869 | 0.811825 | 5.77E-51 | -1.69E-46 |
| MS.gene050559 | MS.gene74869 | 0.828298 | 9.72E-55 | -1.69E-46 |
| MS.gene050561 | MS.gene74869 | 0.82275 | 2.00E-53 | -1.69E-46 |
| MS.gene050562 | MS.gene74869 | 0.819665 | 1.03E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene74869 | 0.821284 | 4.38E-53 | -1.69E-46 |
| MS.gene051279 | MS.gene74869 | 0.846663 | 1.89E-59 | -1.69E-46 |
| MS.gene051332 | MS.gene74869 | 0.802015 | 6.86E-49 | -1.69E-46 |
| MS.gene051574 | MS.gene74869 | 0.801539 | 8.58E-49 | -1.69E-46 |
| MS.gene051594 | MS.gene74869 | 0.809089 | 2.25E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene74869 | 0.827974 | 1.16E-54 | -1.69E-46 |
| MS.gene051719 | MS.gene74869 | 0.823393 | 1.42E-53 | -1.69E-46 |
| MS.gene051720 | MS.gene74869 | 0.812261 | 4.64E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene74869 | 0.839042 | 2.01E-57 | -1.69E-46 |
| MS.gene051957 | MS.gene74869 | 0.812247 | 4.67E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene74869 | 0.830676 | 2.57E-55 | -1.69E-46 |
| MS.gene052534 | MS.gene74869 | 0.802698 | 4.96E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene74869 | 0.864177 | 1.47E-64 | -1.69E-46 |
| MS.gene052584 | MS.gene74869 | 0.872413 | 3.24E-67 | -1.69E-46 |
| MS.gene052586 | MS.gene74869 | 0.823719 | 1.19E-53 | -1.69E-46 |
| MS.gene052773 | MS.gene74869 | 0.824635 | 7.26E-54 | -1.69E-46 |
| MS.gene053084 | MS.gene74869 | 0.80704 | 6.14E-50 | -1.69E-46 |
| MS.gene05308 | MS.gene74869 | 0.809753 | 1.62E-50 | -1.69E-46 |
| MS.gene053122 | MS.gene74869 | 0.815382 | 9.51E-52 | -1.69E-46 |
| MS.gene053195 | MS.gene74869 | 0.803841 | 2.87E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene74869 | 0.866503 | 2.72E-65 | -1.69E-46 |
| MS.gene053599 | MS.gene74869 | 0.817328 | 3.49E-52 | -1.69E-46 |
| MS.gene05365 | MS.gene74869 | 0.823513 | 1.33E-53 | -1.69E-46 |
| MS.gene053883 | MS.gene74869 | 0.804905 | 1.73E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene74869 | 0.816941 | 4.26E-52 | -1.69E-46 |
| MS.gene054222 | MS.gene74869 | 0.800976 | 1.12E-48 | -1.69E-46 |
| MS.gene054291 | MS.gene74869 | -0.807068 | 6.06E-50 | -1.69E-46 |
| MS.gene054576 | MS.gene74869 | 0.8192 | 1.32E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene74869 | 0.839786 | 1.29E-57 | -1.69E-46 |
| MS.gene054775 | MS.gene74869 | 0.81014 | 1.34E-50 | -1.69E-46 |
| MS.gene054967 | MS.gene74869 | 0.817661 | 2.94E-52 | -1.69E-46 |
| MS.gene054991 | MS.gene74869 | 0.820473 | 6.73E-53 | -1.69E-46 |
| MS.gene055166 | MS.gene74869 | 0.817178 | 3.77E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene74869 | 0.809074 | 2.26E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene74869 | 0.832244 | 1.06E-55 | -1.69E-46 |
| MS.gene055589 | MS.gene74869 | 0.826799 | 2.22E-54 | -1.69E-46 |
| MS.gene055694 | MS.gene74869 | 0.805147 | 1.54E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene74869 | 0.849785 | 2.59E-60 | -1.69E-46 |
| MS.gene055808 | MS.gene74869 | 0.823633 | 1.25E-53 | -1.69E-46 |
| MS.gene05604 | MS.gene74869 | 0.815376 | 9.54E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene74869 | 0.819961 | 8.82E-53 | -1.69E-46 |
| MS.gene056091 | MS.gene74869 | 0.808997 | 2.35E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene74869 | 0.810295 | 1.24E-50 | -1.69E-46 |
| MS.gene056498 | MS.gene74869 | 0.803702 | 3.07E-49 | -1.69E-46 |
| MS.gene05659 | MS.gene74869 | 0.804298 | 2.31E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene74869 | 0.815408 | 9.39E-52 | -1.69E-46 |
| MS.gene05689 | MS.gene74869 | 0.802765 | 4.80E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene74869 | 0.803777 | 2.97E-49 | -1.69E-46 |
| MS.gene057027 | MS.gene74869 | 0.817639 | 2.97E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene74869 | 0.818291 | 2.12E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene74869 | 0.819301 | 1.25E-52 | -1.69E-46 |
| MS.gene057314 | MS.gene74869 | 0.819862 | 9.29E-53 | -1.69E-46 |
| MS.gene057414 | MS.gene74869 | 0.814554 | 1.45E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene74869 | 0.804559 | 2.04E-49 | -1.69E-46 |
| MS.gene057921 | MS.gene74869 | 0.809209 | 2.12E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene74869 | 0.836804 | 7.55E-57 | -1.69E-46 |
| MS.gene058625 | MS.gene74869 | 0.84478 | 6.12E-59 | -1.69E-46 |
| MS.gene058979 | MS.gene74869 | 0.816914 | 4.32E-52 | -1.69E-46 |
| MS.gene059084 | MS.gene74869 | 0.824774 | 6.73E-54 | -1.69E-46 |
| MS.gene059272 | MS.gene74869 | 0.80582 | 1.11E-49 | -1.69E-46 |
| MS.gene05953 | MS.gene74869 | 0.824876 | 6.36E-54 | -1.69E-46 |
| MS.gene05954 | MS.gene74869 | 0.856528 | 3.03E-62 | -1.69E-46 |
| MS.gene059584 | MS.gene74869 | 0.800131 | 1.66E-48 | -1.69E-46 |
| MS.gene059625 | MS.gene74869 | 0.85228 | 5.12E-61 | -1.69E-46 |
| MS.gene05985 | MS.gene74869 | -0.802189 | 6.31E-49 | -1.69E-46 |
| MS.gene059935 | MS.gene74869 | 0.84157 | 4.38E-58 | -1.69E-46 |
| MS.gene060365 | MS.gene74869 | 0.840408 | 8.85E-58 | -1.69E-46 |
| MS.gene060429 | MS.gene74869 | 0.820171 | 7.90E-53 | -1.69E-46 |
| MS.gene060521 | MS.gene74869 | 0.849424 | 3.26E-60 | -1.69E-46 |
| MS.gene060587 | MS.gene74869 | 0.800527 | 1.38E-48 | -1.69E-46 |
| MS.gene060634 | MS.gene74869 | -0.817697 | 2.88E-52 | -1.69E-46 |
| MS.gene060879 | MS.gene74869 | 0.80673 | 7.14E-50 | -1.69E-46 |
| MS.gene061040 | MS.gene74869 | -0.803381 | 3.58E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74869.t1 | MTR_1g079270 | 80.000 | 50 | 10 | 0 | 34 | 83 | 213 | 262 | 9.74e-21 | 87.4 |
| MS.gene74869.t1 | MTR_1g079270 | 84.444 | 45 | 7 | 0 | 80 | 124 | 328 | 372 | 1.37e-19 | 84.3 |
| MS.gene74869.t1 | MTR_6g016785 | 57.692 | 52 | 22 | 0 | 32 | 83 | 458 | 509 | 1.41e-13 | 67.8 |
| MS.gene74869.t1 | MTR_7g013170 | 58.000 | 50 | 21 | 0 | 34 | 83 | 394 | 443 | 2.02e-13 | 67.4 |
| MS.gene74869.t1 | MTR_6g016795 | 57.692 | 52 | 22 | 0 | 32 | 83 | 394 | 445 | 2.35e-13 | 67.0 |
| MS.gene74869.t1 | MTR_6g016795 | 50.000 | 58 | 21 | 1 | 80 | 137 | 511 | 560 | 4.78e-11 | 60.5 |
| MS.gene74869.t1 | MTR_6g016800 | 56.000 | 50 | 22 | 0 | 34 | 83 | 396 | 445 | 2.60e-13 | 67.0 |
| MS.gene74869.t1 | MTR_7g013810 | 39.773 | 88 | 35 | 1 | 34 | 121 | 391 | 460 | 4.85e-13 | 66.2 |
| MS.gene74869.t1 | MTR_7g028445 | 58.824 | 51 | 20 | 1 | 34 | 83 | 359 | 409 | 6.51e-13 | 65.9 |
| MS.gene74869.t1 | MTR_7g028445 | 48.276 | 58 | 22 | 1 | 80 | 137 | 475 | 524 | 6.32e-11 | 60.1 |
| MS.gene74869.t1 | MTR_4g036905 | 58.824 | 51 | 20 | 1 | 34 | 83 | 359 | 409 | 6.51e-13 | 65.9 |
| MS.gene74869.t1 | MTR_4g036905 | 48.276 | 58 | 22 | 1 | 80 | 137 | 475 | 524 | 6.32e-11 | 60.1 |
| MS.gene74869.t1 | MTR_6g016845 | 52.000 | 50 | 24 | 0 | 34 | 83 | 409 | 458 | 8.98e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74869.t1 | AT5G15870 | 54.000 | 50 | 23 | 0 | 34 | 83 | 440 | 489 | 5.80e-11 | 60.5 |
Find 40 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGGTTGGGACTGCTTGGTT+TGG | 0.247623 | 1.1:+58927628 | MS.gene74869:CDS |
| GGGTTGGGACTGCTTGGTTT+GGG | 0.255874 | 1.1:+58927629 | MS.gene74869:CDS |
| TGTAAACATTGATCCATATT+GGG | 0.256708 | 1.1:+58927255 | MS.gene74869:CDS |
| TTGTAAACATTGATCCATAT+TGG | 0.286933 | 1.1:+58927254 | MS.gene74869:CDS |
| CACTCGAGATATTTCCTTGA+TGG | 0.293905 | 1.1:+58927220 | MS.gene74869:CDS |
| CGCTTGATAGGTTTAGAATA+TGG | 0.329607 | 1.1:+58927377 | MS.gene74869:intron |
| TTATACTTCTTACCCCAATA+TGG | 0.333060 | 1.1:-58927268 | None:intergenic |
| AATACTTTCCAAAGCTGTTA+AGG | 0.338125 | 1.1:-58927429 | None:intergenic |
| AAACCAGGGTTTGCTTATCT+TGG | 0.353049 | 1.1:+58927509 | MS.gene74869:CDS |
| TGGAGCAACCTTAACAGCTT+TGG | 0.376313 | 1.1:+58927421 | MS.gene74869:CDS |
| GGGACTGCTTGGTTTGGGGA+AGG | 0.383767 | 1.1:+58927634 | MS.gene74869:CDS |
| AGGAAATATCTCGAGTGATA+TGG | 0.399023 | 1.1:-58927214 | None:intergenic |
| TTGTGATAAGGAAGGTGCTT+TGG | 0.403486 | 1.1:+58927690 | MS.gene74869:CDS |
| TCTAGTGGTGAAGCTGTGTT+TGG | 0.405663 | 1.1:+58926642 | MS.gene74869:CDS |
| GTGAAGGAACTTGTCGGGTT+GGG | 0.438392 | 1.1:+58927614 | MS.gene74869:intron |
| CTTGTCGGGTTGGGACTGCT+TGG | 0.449692 | 1.1:+58927623 | MS.gene74869:CDS |
| GAGTAGACCTTGGAGAAGAA+AGG | 0.453767 | 1.1:+58926668 | MS.gene74869:CDS |
| TCTGACTCTAGTTATGACTT+TGG | 0.479169 | 1.1:+58927169 | MS.gene74869:CDS |
| TTTGTAGAGAATTTGTGATA+AGG | 0.486578 | 1.1:+58927678 | MS.gene74869:CDS |
| AGAAGGAATGAATATGTATG+AGG | 0.491603 | 1.1:+58927478 | MS.gene74869:CDS |
| AGTAGACCTTGGAGAAGAAA+GGG | 0.502514 | 1.1:+58926669 | MS.gene74869:CDS |
| TAGAGAATTTGTGATAAGGA+AGG | 0.511186 | 1.1:+58927682 | MS.gene74869:CDS |
| GACGCCAATGTTGTTACTGT+TGG | 0.529324 | 1.1:+58927401 | MS.gene74869:CDS |
| ACCGAACCCTTTCTTCTCCA+AGG | 0.541202 | 1.1:-58926675 | None:intergenic |
| TGTGAAGGAACTTGTCGGGT+TGG | 0.546197 | 1.1:+58927613 | MS.gene74869:intron |
| TTTATATGATCAGGAATATG+GGG | 0.551445 | 1.1:+58927121 | MS.gene74869:intron |
| GTTTGTTACACTGTGTCTAG+TGG | 0.556639 | 1.1:+58926627 | MS.gene74869:CDS |
| AATATGTGAAGGAACTTGTC+GGG | 0.559686 | 1.1:+58927609 | MS.gene74869:intron |
| GGTTGGGACTGCTTGGTTTG+GGG | 0.562711 | 1.1:+58927630 | MS.gene74869:CDS |
| GTAAACATTGATCCATATTG+GGG | 0.577879 | 1.1:+58927256 | MS.gene74869:CDS |
| GAATATGTGAAGGAACTTGT+CGG | 0.578775 | 1.1:+58927608 | MS.gene74869:intron |
| CAAGAACAGCAATACCATCA+AGG | 0.580016 | 1.1:-58927234 | None:intergenic |
| TGTTTGGATTGAGTAGACCT+TGG | 0.601321 | 1.1:+58926658 | MS.gene74869:CDS |
| ATGTGGTGGCATGTAAGAGA+AGG | 0.604058 | 1.1:+58927461 | MS.gene74869:CDS |
| GGAGGAGTTGTTACAAAACA+AGG | 0.618888 | 1.1:+58927142 | MS.gene74869:CDS |
| ATATGATCAGGAATATGGGG+AGG | 0.640187 | 1.1:+58927124 | MS.gene74869:intron |
| TGCTCCAACAGTAACAACAT+TGG | 0.651685 | 1.1:-58927405 | None:intergenic |
| AAAGTATTAGAGCTCAAATG+TGG | 0.658452 | 1.1:+58927444 | MS.gene74869:CDS |
| GTATTAGAGCTCAAATGTGG+TGG | 0.662975 | 1.1:+58927447 | MS.gene74869:CDS |
| GCACCAAGATAAGCAAACCC+TGG | 0.666993 | 1.1:-58927512 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATATTATGAAATTGTTT+CGG | + | chr1.1:58926902-58926921 | MS.gene74869:intron | 10.0% |
| !!! | AAAACAAACACTTTTGAAAT+AGG | - | chr1.1:58927580-58927599 | None:intergenic | 20.0% |
| !!! | AAATGGATTTTTATATGATC+AGG | + | chr1.1:58927112-58927131 | MS.gene74869:intron | 20.0% |
| !!! | TTTTATATGATCAGGAATAT+GGG | + | chr1.1:58927120-58927139 | MS.gene74869:intron | 20.0% |
| !!! | TTTTTATATGATCAGGAATA+TGG | + | chr1.1:58927119-58927138 | MS.gene74869:intron | 20.0% |
| ! | TGTAAACATTGATCCATATT+GGG | + | chr1.1:58927255-58927274 | MS.gene74869:CDS | 25.0% |
| ! | TTGTAAACATTGATCCATAT+TGG | + | chr1.1:58927254-58927273 | MS.gene74869:CDS | 25.0% |
| ! | TTTATATGATCAGGAATATG+GGG | + | chr1.1:58927121-58927140 | MS.gene74869:intron | 25.0% |
| ! | TTTATGGATAATTGATTGCA+AGG | + | chr1.1:58926985-58927004 | MS.gene74869:intron | 25.0% |
| ! | TTTGTAGAGAATTTGTGATA+AGG | + | chr1.1:58927678-58927697 | MS.gene74869:CDS | 25.0% |
| !! | TAAATTCATCTGAGATAACA+AGG | + | chr1.1:58926949-58926968 | MS.gene74869:intron | 25.0% |
| !! | TTCAAATACTTCCTAACTTT+TGG | - | chr1.1:58927053-58927072 | None:intergenic | 25.0% |
| !!! | AGGACTTCATCTTATTTTTA+TGG | + | chr1.1:58926969-58926988 | MS.gene74869:intron | 25.0% |
| AATACTTTCCAAAGCTGTTA+AGG | - | chr1.1:58927432-58927451 | None:intergenic | 30.0% | |
| AGAAGGAATGAATATGTATG+AGG | + | chr1.1:58927478-58927497 | MS.gene74869:CDS | 30.0% | |
| AGTATGCATTAACAACTTCA+CGG | - | chr1.1:58927349-58927368 | None:intergenic | 30.0% | |
| GATGGAACTTTCAAAGAAAA+TGG | + | chr1.1:58927095-58927114 | MS.gene74869:intron | 30.0% | |
| GTAAACATTGATCCATATTG+GGG | + | chr1.1:58927256-58927275 | MS.gene74869:CDS | 30.0% | |
| TAGAGAATTTGTGATAAGGA+AGG | + | chr1.1:58927682-58927701 | MS.gene74869:CDS | 30.0% | |
| TTATACTTCTTACCCCAATA+TGG | - | chr1.1:58927271-58927290 | None:intergenic | 30.0% | |
| TTCTGATGTTGAATATGTGA+AGG | + | chr1.1:58927598-58927617 | MS.gene74869:intron | 30.0% | |
| TTGATGTGATTCCAAAAGTT+AGG | + | chr1.1:58927039-58927058 | MS.gene74869:intron | 30.0% | |
| ! | AAAGTATTAGAGCTCAAATG+TGG | + | chr1.1:58927444-58927463 | MS.gene74869:CDS | 30.0% |
| ! | ATGAGGAAGATTTTAAACCA+GGG | + | chr1.1:58927495-58927514 | MS.gene74869:CDS | 30.0% |
| ! | TATGAGGAAGATTTTAAACC+AGG | + | chr1.1:58927494-58927513 | MS.gene74869:CDS | 30.0% |
| !!! | ACTTTTGAAATAGGCAACAA+TGG | - | chr1.1:58927571-58927590 | None:intergenic | 30.0% |
| AATATGTGAAGGAACTTGTC+GGG | + | chr1.1:58927609-58927628 | MS.gene74869:intron | 35.0% | |
| AGGAAATATCTCGAGTGATA+TGG | - | chr1.1:58927217-58927236 | None:intergenic | 35.0% | |
| CCAAGTTACAAAAACAGGAT+CGG | - | chr1.1:58926856-58926875 | None:intergenic | 35.0% | |
| GAATATGTGAAGGAACTTGT+CGG | + | chr1.1:58927608-58927627 | MS.gene74869:intron | 35.0% | |
| GTATGCATTAACAACTTCAC+GGG | - | chr1.1:58927348-58927367 | None:intergenic | 35.0% | |
| TCTGACTCTAGTTATGACTT+TGG | + | chr1.1:58927169-58927188 | MS.gene74869:CDS | 35.0% | |
| TGAAAGAGATCATTGAGCTT+TGG | + | chr1.1:58927069-58927088 | MS.gene74869:intron | 35.0% | |
| TGGATAATTGATTGCAAGGT+TGG | + | chr1.1:58926989-58927008 | MS.gene74869:intron | 35.0% | |
| ! | CGCTTGATAGGTTTAGAATA+TGG | + | chr1.1:58927377-58927396 | MS.gene74869:intron | 35.0% |
| !! | AGCATTGATAGTGAACTTGT+TGG | + | chr1.1:58926801-58926820 | MS.gene74869:intron | 35.0% |
| AGTAGACCTTGGAGAAGAAA+GGG | + | chr1.1:58926669-58926688 | MS.gene74869:CDS | 40.0% | |
| ATATGATCAGGAATATGGGG+AGG | + | chr1.1:58927124-58927143 | MS.gene74869:intron | 40.0% | |
| CAAGAACAGCAATACCATCA+AGG | - | chr1.1:58927237-58927256 | None:intergenic | 40.0% | |
| CACTCGAGATATTTCCTTGA+TGG | + | chr1.1:58927220-58927239 | MS.gene74869:CDS | 40.0% | |
| GAGTGCCAAGTTACAAAAAC+AGG | - | chr1.1:58926861-58926880 | None:intergenic | 40.0% | |
| GGAGGAGTTGTTACAAAACA+AGG | + | chr1.1:58927142-58927161 | MS.gene74869:CDS | 40.0% | |
| GTAACTTGGCACTCTATGAA+TGG | + | chr1.1:58926867-58926886 | MS.gene74869:intron | 40.0% | |
| GTATTAGAGCTCAAATGTGG+TGG | + | chr1.1:58927447-58927466 | MS.gene74869:CDS | 40.0% | |
| GTTCCTTTGAACGATGTTGA+GGG | + | chr1.1:58926924-58926943 | MS.gene74869:intron | 40.0% | |
| TACTATTCTGCTCGCTTGAT+AGG | + | chr1.1:58927365-58927384 | MS.gene74869:intron | 40.0% | |
| TGCTCCAACAGTAACAACAT+TGG | - | chr1.1:58927408-58927427 | None:intergenic | 40.0% | |
| TGTTTGGATTGAGTAGACCT+TGG | + | chr1.1:58926658-58926677 | MS.gene74869:CDS | 40.0% | |
| ! | AAACCAGGGTTTGCTTATCT+TGG | + | chr1.1:58927509-58927528 | MS.gene74869:CDS | 40.0% |
| ! | GCGTCAAACTTGTTCACTTA+TGG | + | chr1.1:58927291-58927310 | MS.gene74869:intron | 40.0% |
| ! | GTTTGTTACACTGTGTCTAG+TGG | + | chr1.1:58926627-58926646 | MS.gene74869:CDS | 40.0% |
| !! | AGTGAACTTGTTGGTGTTGT+TGG | + | chr1.1:58926810-58926829 | MS.gene74869:intron | 40.0% |
| !! | ATCATTGAGCTTTGGCTTGA+TGG | + | chr1.1:58927077-58927096 | MS.gene74869:intron | 40.0% |
| !! | TTGGTGCTAGAGACAATGTA+TGG | + | chr1.1:58927528-58927547 | MS.gene74869:intron | 40.0% |
| !! | TTGTGATAAGGAAGGTGCTT+TGG | + | chr1.1:58927690-58927709 | MS.gene74869:CDS | 40.0% |
| !!! | CCGATCCTGTTTTTGTAACT+TGG | + | chr1.1:58926853-58926872 | MS.gene74869:intron | 40.0% |
| ACCTTGGAGAAGAAAGGGTT+CGG | + | chr1.1:58926674-58926693 | MS.gene74869:intron | 45.0% | |
| AGTCCCTCAACATCGTTCAA+AGG | - | chr1.1:58926930-58926949 | None:intergenic | 45.0% | |
| ATGTGGTGGCATGTAAGAGA+AGG | + | chr1.1:58927461-58927480 | MS.gene74869:CDS | 45.0% | |
| GACGCCAATGTTGTTACTGT+TGG | + | chr1.1:58927401-58927420 | MS.gene74869:CDS | 45.0% | |
| GAGTAGACCTTGGAGAAGAA+AGG | + | chr1.1:58926668-58926687 | MS.gene74869:CDS | 45.0% | |
| GGTTCCTTTGAACGATGTTG+AGG | + | chr1.1:58926923-58926942 | MS.gene74869:intron | 45.0% | |
| TCTAGTGGTGAAGCTGTGTT+TGG | + | chr1.1:58926642-58926661 | MS.gene74869:CDS | 45.0% | |
| TGGAGCAACCTTAACAGCTT+TGG | + | chr1.1:58927421-58927440 | MS.gene74869:CDS | 45.0% | |
| !! | GGATCGGTTTTCAAAAGCCA+TGG | - | chr1.1:58926840-58926859 | None:intergenic | 45.0% |
| !! | TTGGTGTTGTTGGTGATCCA+TGG | + | chr1.1:58926820-58926839 | MS.gene74869:intron | 45.0% |
| ACCGAACCCTTTCTTCTCCA+AGG | - | chr1.1:58926678-58926697 | None:intergenic | 50.0% | |
| GCACCAAGATAAGCAAACCC+TGG | - | chr1.1:58927515-58927534 | None:intergenic | 50.0% | |
| GTGAAGGAACTTGTCGGGTT+GGG | + | chr1.1:58927614-58927633 | MS.gene74869:intron | 50.0% | |
| TGTGAAGGAACTTGTCGGGT+TGG | + | chr1.1:58927613-58927632 | MS.gene74869:intron | 50.0% | |
| GGGTTGGGACTGCTTGGTTT+GGG | + | chr1.1:58927629-58927648 | MS.gene74869:CDS | 55.0% | |
| ! | GGTTGGGACTGCTTGGTTTG+GGG | + | chr1.1:58927630-58927649 | MS.gene74869:CDS | 55.0% |
| ! | CGGGTTGGGACTGCTTGGTT+TGG | + | chr1.1:58927628-58927647 | MS.gene74869:CDS | 60.0% |
| !! | CTTGTCGGGTTGGGACTGCT+TGG | + | chr1.1:58927623-58927642 | MS.gene74869:CDS | 60.0% |
| !! | GGGACTGCTTGGTTTGGGGA+AGG | + | chr1.1:58927634-58927653 | MS.gene74869:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 58926597 | 58927721 | 58926597 | ID=MS.gene74869 |
| chr1.1 | mRNA | 58926597 | 58927721 | 58926597 | ID=MS.gene74869.t1;Parent=MS.gene74869 |
| chr1.1 | exon | 58926597 | 58926690 | 58926597 | ID=MS.gene74869.t1.exon1;Parent=MS.gene74869.t1 |
| chr1.1 | CDS | 58926597 | 58926690 | 58926597 | ID=cds.MS.gene74869.t1;Parent=MS.gene74869.t1 |
| chr1.1 | exon | 58927134 | 58927277 | 58927134 | ID=MS.gene74869.t1.exon2;Parent=MS.gene74869.t1 |
| chr1.1 | CDS | 58927134 | 58927277 | 58927134 | ID=cds.MS.gene74869.t1;Parent=MS.gene74869.t1 |
| chr1.1 | exon | 58927387 | 58927544 | 58927387 | ID=MS.gene74869.t1.exon3;Parent=MS.gene74869.t1 |
| chr1.1 | CDS | 58927387 | 58927544 | 58927387 | ID=cds.MS.gene74869.t1;Parent=MS.gene74869.t1 |
| chr1.1 | exon | 58927620 | 58927721 | 58927620 | ID=MS.gene74869.t1.exon4;Parent=MS.gene74869.t1 |
| chr1.1 | CDS | 58927620 | 58927721 | 58927620 | ID=cds.MS.gene74869.t1;Parent=MS.gene74869.t1 |
| Gene Sequence |
| Protein sequence |
