Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78406.t1 | XP_003597397.2 | 93.6 | 110 | 5 | 1 | 61 | 170 | 76 | 183 | 1.20E-34 | 156.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78406.t1 | Q2HS36 | 93.6 | 110 | 5 | 1 | 61 | 170 | 76 | 183 | 8.6e-35 | 156.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049284 | MS.gene78406 | 0.817998 | 2.47E-52 | -1.69E-46 |
MS.gene049346 | MS.gene78406 | 0.808161 | 3.55E-50 | -1.69E-46 |
MS.gene049351 | MS.gene78406 | 0.80112 | 1.05E-48 | -1.69E-46 |
MS.gene049389 | MS.gene78406 | 0.820546 | 6.48E-53 | -1.69E-46 |
MS.gene049491 | MS.gene78406 | 0.85245 | 4.58E-61 | -1.69E-46 |
MS.gene049758 | MS.gene78406 | 0.876128 | 1.79E-68 | -1.69E-46 |
MS.gene050076 | MS.gene78406 | 0.846217 | 2.49E-59 | -1.69E-46 |
MS.gene050099 | MS.gene78406 | 0.830144 | 3.47E-55 | -1.69E-46 |
MS.gene050128 | MS.gene78406 | 0.818142 | 2.29E-52 | -1.69E-46 |
MS.gene050301 | MS.gene78406 | 0.872503 | 3.03E-67 | -1.69E-46 |
MS.gene050397 | MS.gene78406 | 0.84037 | 9.06E-58 | -1.69E-46 |
MS.gene050406 | MS.gene78406 | 0.809765 | 1.61E-50 | -1.69E-46 |
MS.gene050432 | MS.gene78406 | 0.829263 | 5.68E-55 | -1.69E-46 |
MS.gene050464 | MS.gene78406 | 0.808492 | 3.02E-50 | -1.69E-46 |
MS.gene050529 | MS.gene78406 | 0.840386 | 8.97E-58 | -1.69E-46 |
MS.gene05101 | MS.gene78406 | 0.857698 | 1.37E-62 | -1.69E-46 |
MS.gene051471 | MS.gene78406 | 0.842772 | 2.11E-58 | -1.69E-46 |
MS.gene051582 | MS.gene78406 | 0.810517 | 1.11E-50 | -1.69E-46 |
MS.gene051662 | MS.gene78406 | 0.818112 | 2.32E-52 | -1.69E-46 |
MS.gene051663 | MS.gene78406 | 0.835986 | 1.22E-56 | -1.69E-46 |
MS.gene051860 | MS.gene78406 | 0.820231 | 7.65E-53 | -1.69E-46 |
MS.gene051877 | MS.gene78406 | 0.8049 | 1.73E-49 | -1.69E-46 |
MS.gene052078 | MS.gene78406 | 0.893603 | 5.39E-75 | -1.69E-46 |
MS.gene052178 | MS.gene78406 | 0.845692 | 3.47E-59 | -1.69E-46 |
MS.gene052188 | MS.gene78406 | 0.814165 | 1.77E-51 | -1.69E-46 |
MS.gene052310 | MS.gene78406 | 0.856257 | 3.63E-62 | -1.69E-46 |
MS.gene052326 | MS.gene78406 | 0.864025 | 1.64E-64 | -1.69E-46 |
MS.gene052340 | MS.gene78406 | 0.84288 | 1.97E-58 | -1.69E-46 |
MS.gene052485 | MS.gene78406 | 0.815359 | 9.63E-52 | -1.69E-46 |
MS.gene053103 | MS.gene78406 | 0.813202 | 2.88E-51 | -1.69E-46 |
MS.gene053181 | MS.gene78406 | 0.807216 | 5.63E-50 | -1.69E-46 |
MS.gene053209 | MS.gene78406 | 0.827225 | 1.76E-54 | -1.69E-46 |
MS.gene053322 | MS.gene78406 | 0.801533 | 8.61E-49 | -1.69E-46 |
MS.gene053557 | MS.gene78406 | 0.838994 | 2.07E-57 | -1.69E-46 |
MS.gene053836 | MS.gene78406 | 0.867738 | 1.10E-65 | -1.69E-46 |
MS.gene053971 | MS.gene78406 | 0.824662 | 7.15E-54 | -1.69E-46 |
MS.gene054123 | MS.gene78406 | 0.821859 | 3.23E-53 | -1.69E-46 |
MS.gene054376 | MS.gene78406 | 0.810252 | 1.26E-50 | -1.69E-46 |
MS.gene054473 | MS.gene78406 | 0.8025 | 5.45E-49 | -1.69E-46 |
MS.gene05455 | MS.gene78406 | 0.854153 | 1.49E-61 | -1.69E-46 |
MS.gene054983 | MS.gene78406 | 0.800062 | 1.72E-48 | -1.69E-46 |
MS.gene055116 | MS.gene78406 | 0.805035 | 1.62E-49 | -1.69E-46 |
MS.gene055277 | MS.gene78406 | 0.859337 | 4.43E-63 | -1.69E-46 |
MS.gene055390 | MS.gene78406 | 0.852547 | 4.30E-61 | -1.69E-46 |
MS.gene055422 | MS.gene78406 | 0.85162 | 7.88E-61 | -1.69E-46 |
MS.gene055428 | MS.gene78406 | 0.865256 | 6.74E-65 | -1.69E-46 |
MS.gene05553 | MS.gene78406 | 0.809494 | 1.84E-50 | -1.69E-46 |
MS.gene055712 | MS.gene78406 | 0.845708 | 3.43E-59 | -1.69E-46 |
MS.gene055896 | MS.gene78406 | 0.818845 | 1.58E-52 | -1.69E-46 |
MS.gene056191 | MS.gene78406 | 0.824237 | 9.00E-54 | -1.69E-46 |
MS.gene056407 | MS.gene78406 | 0.841216 | 5.44E-58 | -1.69E-46 |
MS.gene056410 | MS.gene78406 | 0.849176 | 3.83E-60 | -1.69E-46 |
MS.gene056609 | MS.gene78406 | 0.819341 | 1.22E-52 | -1.69E-46 |
MS.gene056612 | MS.gene78406 | 0.857366 | 1.71E-62 | -1.69E-46 |
MS.gene056796 | MS.gene78406 | 0.815141 | 1.08E-51 | -1.69E-46 |
MS.gene05702 | MS.gene78406 | 0.841154 | 5.64E-58 | -1.69E-46 |
MS.gene057121 | MS.gene78406 | 0.809364 | 1.96E-50 | -1.69E-46 |
MS.gene057123 | MS.gene78406 | 0.80681 | 6.86E-50 | -1.69E-46 |
MS.gene057295 | MS.gene78406 | 0.836111 | 1.13E-56 | -1.69E-46 |
MS.gene05733 | MS.gene78406 | 0.806014 | 1.01E-49 | -1.69E-46 |
MS.gene057439 | MS.gene78406 | 0.801825 | 7.50E-49 | -1.69E-46 |
MS.gene057450 | MS.gene78406 | 0.815327 | 9.79E-52 | -1.69E-46 |
MS.gene058002 | MS.gene78406 | 0.856546 | 2.99E-62 | -1.69E-46 |
MS.gene058082 | MS.gene78406 | 0.827031 | 1.96E-54 | -1.69E-46 |
MS.gene05811 | MS.gene78406 | 0.880284 | 6.23E-70 | -1.69E-46 |
MS.gene058233 | MS.gene78406 | 0.819727 | 9.98E-53 | -1.69E-46 |
MS.gene058276 | MS.gene78406 | 0.808201 | 3.48E-50 | -1.69E-46 |
MS.gene058293 | MS.gene78406 | 0.84561 | 3.65E-59 | -1.69E-46 |
MS.gene058365 | MS.gene78406 | 0.811055 | 8.48E-51 | -1.69E-46 |
MS.gene058660 | MS.gene78406 | 0.85867 | 7.02E-63 | -1.69E-46 |
MS.gene058787 | MS.gene78406 | 0.829527 | 4.90E-55 | -1.69E-46 |
MS.gene058845 | MS.gene78406 | 0.825223 | 5.27E-54 | -1.69E-46 |
MS.gene05907 | MS.gene78406 | 0.887158 | 1.82E-72 | -1.69E-46 |
MS.gene059326 | MS.gene78406 | 0.848417 | 6.21E-60 | -1.69E-46 |
MS.gene059518 | MS.gene78406 | 0.853642 | 2.09E-61 | -1.69E-46 |
MS.gene059597 | MS.gene78406 | 0.878874 | 1.97E-69 | -1.69E-46 |
MS.gene059676 | MS.gene78406 | 0.85535 | 6.69E-62 | -1.69E-46 |
MS.gene059688 | MS.gene78406 | 0.818943 | 1.51E-52 | -1.69E-46 |
MS.gene059692 | MS.gene78406 | 0.84177 | 3.89E-58 | -1.69E-46 |
MS.gene059695 | MS.gene78406 | 0.837745 | 4.34E-57 | -1.69E-46 |
MS.gene059708 | MS.gene78406 | 0.833576 | 4.93E-56 | -1.69E-46 |
MS.gene05984 | MS.gene78406 | 0.836059 | 1.17E-56 | -1.69E-46 |
MS.gene059894 | MS.gene78406 | 0.883046 | 6.25E-71 | -1.69E-46 |
MS.gene059899 | MS.gene78406 | 0.817534 | 3.14E-52 | -1.69E-46 |
MS.gene059960 | MS.gene78406 | 0.807893 | 4.05E-50 | -1.69E-46 |
MS.gene060005 | MS.gene78406 | 0.810692 | 1.02E-50 | -1.69E-46 |
MS.gene06037 | MS.gene78406 | 0.833838 | 4.24E-56 | -1.69E-46 |
MS.gene060407 | MS.gene78406 | 0.81858 | 1.82E-52 | -1.69E-46 |
MS.gene060804 | MS.gene78406 | 0.802109 | 6.56E-49 | -1.69E-46 |
MS.gene061049 | MS.gene78406 | 0.869202 | 3.70E-66 | -1.69E-46 |
MS.gene061051 | MS.gene78406 | -0.832022 | 1.20E-55 | -1.69E-46 |
MS.gene061112 | MS.gene78406 | 0.807567 | 4.74E-50 | -1.69E-46 |
MS.gene061265 | MS.gene78406 | 0.809839 | 1.55E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78406.t1 | MTR_2g097680 | 92.398 | 171 | 7 | 4 | 1 | 170 | 18 | 183 | 1.30e-80 | 237 |
MS.gene78406.t1 | MTR_1g071380 | 90.643 | 171 | 8 | 6 | 1 | 170 | 1 | 164 | 1.79e-77 | 228 |
MS.gene78406.t1 | MTR_2g097680 | 89.831 | 118 | 6 | 4 | 1 | 117 | 18 | 130 | 6.72e-58 | 177 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78406.t1 | AT2G29180 | 41.772 | 158 | 75 | 5 | 20 | 163 | 5 | 159 | 6.02e-24 | 92.4 |
Find 29 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCTTATCCGTTATCACTAT+TGG | 0.245133 | 2.3:+5423148 | MS.gene78406:CDS |
GCTTATCCGTTATCACTATT+GGG | 0.260636 | 2.3:+5423149 | MS.gene78406:CDS |
TCTGGTTGTAGTAGTGATAA+TGG | 0.300412 | 2.3:-5422954 | None:intergenic |
GAAAGGAAGGTTGCAATCTT+TGG | 0.300675 | 2.3:-5422857 | None:intergenic |
GCTGTAGCAGCAACAGGATT+TGG | 0.334339 | 2.3:-5423013 | None:intergenic |
TTCAAAGGAAGTCCAAACTA+TGG | 0.343791 | 2.3:+5422990 | MS.gene78406:CDS |
CATTGATGCTTCGGAGCAAT+TGG | 0.360695 | 2.3:+5423057 | MS.gene78406:CDS |
CTGGTTGTAGTAGTGATAAT+GGG | 0.369858 | 2.3:-5422953 | None:intergenic |
AACAGGATTTGGCCATAGTT+TGG | 0.372494 | 2.3:-5423002 | None:intergenic |
AAAAGAAAAGAAAAGTAGTA+AGG | 0.384781 | 2.3:+5424152 | MS.gene78406:CDS |
AGGGCAGGACCTAAAGGATT+TGG | 0.404020 | 2.3:+5424172 | MS.gene78406:CDS |
GAGAAAGATGAAGAAGTTGT+TGG | 0.423658 | 2.3:-5422929 | None:intergenic |
TGCTACAGCCATTGATGCTT+CGG | 0.431580 | 2.3:+5423048 | MS.gene78406:CDS |
TCAACAGCTGTAGCAGCAAC+AGG | 0.437132 | 2.3:-5423019 | None:intergenic |
CAATTGCTCCGAAGCATCAA+TGG | 0.447559 | 2.3:-5423056 | None:intergenic |
AGAAGATGATGTTGAAAGGA+AGG | 0.478894 | 2.3:-5422870 | None:intergenic |
TCATCAACTACCACTGATGA+TGG | 0.480753 | 2.3:+5423082 | MS.gene78406:CDS |
AAAGAAAAGAAAAGTAGTAA+GGG | 0.491413 | 2.3:+5424153 | MS.gene78406:CDS |
AAGAAGAAGATGATGTTGAA+AGG | 0.496918 | 2.3:-5422874 | None:intergenic |
GTAGTAAGGGCAGGACCTAA+AGG | 0.510055 | 2.3:+5424166 | MS.gene78406:CDS |
CTTATCCGTTATCACTATTG+GGG | 0.525510 | 2.3:+5423150 | MS.gene78406:CDS |
CATCAACTACCACTGATGAT+GGG | 0.525641 | 2.3:+5423083 | MS.gene78406:CDS |
AAAAGAAAAGTAGTAAGGGC+AGG | 0.536130 | 2.3:+5424157 | MS.gene78406:CDS |
ATATACCCCAATAGTGATAA+CGG | 0.550650 | 2.3:-5423155 | None:intergenic |
TTTCTTGACAAAGAGAGAGA+AGG | 0.571247 | 2.3:+5424090 | MS.gene78406:CDS |
ATCAACTACCACTGATGATG+GGG | 0.608198 | 2.3:+5423084 | MS.gene78406:CDS |
AAGAGACACCCCATCATCAG+TGG | 0.647668 | 2.3:-5423092 | None:intergenic |
GAGAAAGAAGAAGCAGCTAG+CGG | 0.687353 | 2.3:+5424121 | MS.gene78406:CDS |
TGATGATGCAAATAATGCAG+TGG | 0.718262 | 2.3:-5422825 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CTCTATATTAATAAAAGAAT+TGG | - | chr2.3:5423215-5423234 | None:intergenic | 15.0% |
!! | TATTCAAAATGAACTAATTA+GGG | - | chr2.3:5423574-5423593 | None:intergenic | 15.0% |
!!! | AAATGATTATGAACTAATTT+TGG | - | chr2.3:5423547-5423566 | None:intergenic | 15.0% |
!!! | AATAGAATTTTACAATATTG+AGG | + | chr2.3:5423590-5423609 | MS.gene78406:intron | 15.0% |
!!! | CAATTCTTTTATTAATATAG+AGG | + | chr2.3:5423213-5423232 | MS.gene78406:intron | 15.0% |
!!! | TTTTATAAATGTAAATGACT+TGG | + | chr2.3:5423938-5423957 | MS.gene78406:intron | 15.0% |
!!! | TTTTTCGTTTTGTAATTTTA+TGG | + | chr2.3:5423794-5423813 | MS.gene78406:intron | 15.0% |
!! | AAAAGAAAAGAAAAGTAGTA+AGG | + | chr2.3:5424152-5424171 | MS.gene78406:CDS | 20.0% |
!! | AAAGAAAAGAAAAGTAGTAA+GGG | + | chr2.3:5424153-5424172 | MS.gene78406:CDS | 20.0% |
!! | CTAAATTGATTATGAAAGTT+AGG | - | chr2.3:5423488-5423507 | None:intergenic | 20.0% |
!! | CTATTCAAAATGAACTAATT+AGG | - | chr2.3:5423575-5423594 | None:intergenic | 20.0% |
!!! | GAAAATCCATATTTTTTCAA+AGG | + | chr2.3:5422975-5422994 | MS.gene78406:CDS | 20.0% |
!!! | TATTGACATTACATGTTTTA+GGG | + | chr2.3:5423407-5423426 | MS.gene78406:intron | 20.0% |
!!! | TTATTGACATTACATGTTTT+AGG | + | chr2.3:5423406-5423425 | MS.gene78406:intron | 20.0% |
!!! | TTGAAAAAATATGGATTTTC+TGG | - | chr2.3:5422975-5422994 | None:intergenic | 20.0% |
!!! | TTGCGATTTTAATACATTAA+GGG | - | chr2.3:5423758-5423777 | None:intergenic | 20.0% |
!!! | TTTGCGATTTTAATACATTA+AGG | - | chr2.3:5423759-5423778 | None:intergenic | 20.0% |
! | TTACTTAGCATTAGTATTCA+GGG | + | chr2.3:5424012-5424031 | MS.gene78406:intron | 25.0% |
! | TTAGTGAAAATTATTTCCCT+TGG | + | chr2.3:5423323-5423342 | MS.gene78406:intron | 25.0% |
!! | TTTTGATCTTTGAATATGTG+AGG | - | chr2.3:5423904-5423923 | None:intergenic | 25.0% |
AAGAAGAAGATGATGTTGAA+AGG | - | chr2.3:5422877-5422896 | None:intergenic | 30.0% | |
AGTAAAAACGTGTGTTGAAA+TGG | - | chr2.3:5422904-5422923 | None:intergenic | 30.0% | |
ATATACCCCAATAGTGATAA+CGG | - | chr2.3:5423158-5423177 | None:intergenic | 30.0% | |
CACATATTTAGAGACCTAAA+TGG | - | chr2.3:5423717-5423736 | None:intergenic | 30.0% | |
CTAGTTTATACTTTGTAGTG+TGG | - | chr2.3:5423381-5423400 | None:intergenic | 30.0% | |
GTTACTTAGCATTAGTATTC+AGG | + | chr2.3:5424011-5424030 | MS.gene78406:intron | 30.0% | |
TTTAGGTCTCTAAATATGTG+AGG | + | chr2.3:5423717-5423736 | MS.gene78406:intron | 30.0% | |
! | ATCTTTTGACCAAATCCTTT+AGG | - | chr2.3:5424184-5424203 | None:intergenic | 30.0% |
! | CCTCCTATCTAAAACTATTT+CGG | + | chr2.3:5423987-5424006 | MS.gene78406:intron | 30.0% |
! | CTTTTCTTCATTGCTTTCAT+TGG | + | chr2.3:5423127-5423146 | MS.gene78406:CDS | 30.0% |
! | GGACTTCCTTTGAAAAAATA+TGG | - | chr2.3:5422984-5423003 | None:intergenic | 30.0% |
! | TTTAAAGCAAACAGCCATTT+AGG | + | chr2.3:5423700-5423719 | MS.gene78406:intron | 30.0% |
!! | TTTTTGTTTGTTTGTGTTGC+AGG | + | chr2.3:5424045-5424064 | MS.gene78406:intron | 30.0% |
!!! | ACACCGAAATAGTTTTAGAT+AGG | - | chr2.3:5423993-5424012 | None:intergenic | 30.0% |
AAAAGAAAAGTAGTAAGGGC+AGG | + | chr2.3:5424157-5424176 | MS.gene78406:CDS | 35.0% | |
AGAAGATGATGTTGAAAGGA+AGG | - | chr2.3:5422873-5422892 | None:intergenic | 35.0% | |
ATTCCATGTCATATTGTCCA+AGG | - | chr2.3:5423343-5423362 | None:intergenic | 35.0% | |
CTGGTTGTAGTAGTGATAAT+GGG | - | chr2.3:5422956-5422975 | None:intergenic | 35.0% | |
CTTATCCGTTATCACTATTG+GGG | + | chr2.3:5423150-5423169 | MS.gene78406:CDS | 35.0% | |
GAGAAAGATGAAGAAGTTGT+TGG | - | chr2.3:5422932-5422951 | None:intergenic | 35.0% | |
GCTTATCCGTTATCACTATT+GGG | + | chr2.3:5423149-5423168 | MS.gene78406:CDS | 35.0% | |
TCTGGTTGTAGTAGTGATAA+TGG | - | chr2.3:5422957-5422976 | None:intergenic | 35.0% | |
TTCAAAGGAAGTCCAAACTA+TGG | + | chr2.3:5422990-5423009 | MS.gene78406:CDS | 35.0% | |
TTCCATGTCATATTGTCCAA+GGG | - | chr2.3:5423342-5423361 | None:intergenic | 35.0% | |
TTGAGACATGCTTGCAATTT+CGG | - | chr2.3:5423250-5423269 | None:intergenic | 35.0% | |
TTTCTTGACAAAGAGAGAGA+AGG | + | chr2.3:5424090-5424109 | MS.gene78406:CDS | 35.0% | |
! | TGATGATGCAAATAATGCAG+TGG | - | chr2.3:5422828-5422847 | None:intergenic | 35.0% |
!!! | CCGAAATAGTTTTAGATAGG+AGG | - | chr2.3:5423990-5424009 | None:intergenic | 35.0% |
AACAGGATTTGGCCATAGTT+TGG | - | chr2.3:5423005-5423024 | None:intergenic | 40.0% | |
AATCGCAAACACATCTCTAG+TGG | + | chr2.3:5423770-5423789 | MS.gene78406:intron | 40.0% | |
ACACATGCAGTCAACTTACT+AGG | - | chr2.3:5423513-5423532 | None:intergenic | 40.0% | |
CACATGCAGTCAACTTACTA+GGG | - | chr2.3:5423512-5423531 | None:intergenic | 40.0% | |
CATCAACTACCACTGATGAT+GGG | + | chr2.3:5423083-5423102 | MS.gene78406:CDS | 40.0% | |
CTTAGCATTAGTATTCAGGG+AGG | + | chr2.3:5424015-5424034 | MS.gene78406:intron | 40.0% | |
GAAAGGAAGGTTGCAATCTT+TGG | - | chr2.3:5422860-5422879 | None:intergenic | 40.0% | |
GGCAAATGGTCACGATTTAA+AGG | + | chr2.3:5423650-5423669 | MS.gene78406:intron | 40.0% | |
GGCTTATCCGTTATCACTAT+TGG | + | chr2.3:5423148-5423167 | MS.gene78406:CDS | 40.0% | |
TCATCAACTACCACTGATGA+TGG | + | chr2.3:5423082-5423101 | MS.gene78406:CDS | 40.0% | |
TTCCCTTGGACAATATGACA+TGG | + | chr2.3:5423337-5423356 | MS.gene78406:intron | 40.0% | |
! | AGTAAGTTGACTGCATGTGT+TGG | + | chr2.3:5423513-5423532 | MS.gene78406:intron | 40.0% |
! | ATCAACTACCACTGATGATG+GGG | + | chr2.3:5423084-5423103 | MS.gene78406:CDS | 40.0% |
CATTGATGCTTCGGAGCAAT+TGG | + | chr2.3:5423057-5423076 | MS.gene78406:CDS | 45.0% | |
GAGAAAGAAGAAGCAGCTAG+CGG | + | chr2.3:5424121-5424140 | MS.gene78406:CDS | 45.0% | |
TGCTACAGCCATTGATGCTT+CGG | + | chr2.3:5423048-5423067 | MS.gene78406:CDS | 45.0% | |
! | CAATTGCTCCGAAGCATCAA+TGG | - | chr2.3:5423059-5423078 | None:intergenic | 45.0% |
! | GCCAAAACGAGTGACTAGTT+TGG | + | chr2.3:5423629-5423648 | MS.gene78406:intron | 45.0% |
! | GCCAAACTAGTCACTCGTTT+TGG | - | chr2.3:5423633-5423652 | None:intergenic | 45.0% |
!! | CGAGTGACTAGTTTGGCAAA+TGG | + | chr2.3:5423636-5423655 | MS.gene78406:intron | 45.0% |
AAGAGACACCCCATCATCAG+TGG | - | chr2.3:5423095-5423114 | None:intergenic | 50.0% | |
AGGGCAGGACCTAAAGGATT+TGG | + | chr2.3:5424172-5424191 | MS.gene78406:CDS | 50.0% | |
GCTGTAGCAGCAACAGGATT+TGG | - | chr2.3:5423016-5423035 | None:intergenic | 50.0% | |
GTAGTAAGGGCAGGACCTAA+AGG | + | chr2.3:5424166-5424185 | MS.gene78406:CDS | 50.0% | |
TCAACAGCTGTAGCAGCAAC+AGG | - | chr2.3:5423022-5423041 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 5422821 | 5424228 | 5422821 | ID=MS.gene78406 |
chr2.3 | mRNA | 5422821 | 5424228 | 5422821 | ID=MS.gene78406.t1;Parent=MS.gene78406 |
chr2.3 | exon | 5422821 | 5423171 | 5422821 | ID=MS.gene78406.t1.exon1;Parent=MS.gene78406.t1 |
chr2.3 | CDS | 5422821 | 5423171 | 5422821 | ID=cds.MS.gene78406.t1;Parent=MS.gene78406.t1 |
chr2.3 | exon | 5424067 | 5424228 | 5424067 | ID=MS.gene78406.t1.exon2;Parent=MS.gene78406.t1 |
chr2.3 | CDS | 5424067 | 5424228 | 5424067 | ID=cds.MS.gene78406.t1;Parent=MS.gene78406.t1 |
Gene Sequence |
Protein sequence |