AlfalfaGEDB | MS.gene95806

M. sativa cultivar XinJiangDaYe / MS.gene95806

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95806.t1	RHN81973.1	98.6	72	1	0	1	72	1	72	2.40E-32	147.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95806.t1	B7FF93	98.6	72	1	0	1	72	1	72	1.7e-32	147.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene95806	0.801714	7.90E-49	-1.69E-46
MS.gene049356	MS.gene95806	0.868825	4.89E-66	-1.69E-46
MS.gene049369	MS.gene95806	0.860259	2.34E-63	-1.69E-46
MS.gene049396	MS.gene95806	0.831545	1.57E-55	-1.69E-46
MS.gene049661	MS.gene95806	0.800257	1.57E-48	-1.69E-46
MS.gene049662	MS.gene95806	0.800548	1.37E-48	-1.69E-46
MS.gene049910	MS.gene95806	0.80114	1.04E-48	-1.69E-46
MS.gene050128	MS.gene95806	0.808839	2.54E-50	-1.69E-46
MS.gene050301	MS.gene95806	0.803846	2.87E-49	-1.69E-46
MS.gene050432	MS.gene95806	0.802023	6.83E-49	-1.69E-46
MS.gene050670	MS.gene95806	0.846131	2.63E-59	-1.69E-46
MS.gene050971	MS.gene95806	0.811116	8.22E-51	-1.69E-46
MS.gene05105	MS.gene95806	0.823435	1.39E-53	-1.69E-46
MS.gene051360	MS.gene95806	0.830409	2.98E-55	-1.69E-46
MS.gene051525	MS.gene95806	0.807145	5.83E-50	-1.69E-46
MS.gene051605	MS.gene95806	0.801202	1.01E-48	-1.69E-46
MS.gene051692	MS.gene95806	0.806255	8.99E-50	-1.69E-46
MS.gene051860	MS.gene95806	0.816151	6.41E-52	-1.69E-46
MS.gene052188	MS.gene95806	0.835879	1.30E-56	-1.69E-46
MS.gene052253	MS.gene95806	0.84775	9.49E-60	-1.69E-46
MS.gene052310	MS.gene95806	0.808829	2.56E-50	-1.69E-46
MS.gene052340	MS.gene95806	0.832298	1.02E-55	-1.69E-46
MS.gene052414	MS.gene95806	0.819905	9.09E-53	-1.69E-46
MS.gene052421	MS.gene95806	0.827832	1.26E-54	-1.69E-46
MS.gene052485	MS.gene95806	0.845164	4.82E-59	-1.69E-46
MS.gene05316	MS.gene95806	0.842273	2.86E-58	-1.69E-46
MS.gene053209	MS.gene95806	0.802703	4.95E-49	-1.69E-46
MS.gene053449	MS.gene95806	0.853482	2.32E-61	-1.69E-46
MS.gene053758	MS.gene95806	0.819484	1.13E-52	-1.69E-46
MS.gene053813	MS.gene95806	0.845459	4.01E-59	-1.69E-46
MS.gene053912	MS.gene95806	0.838565	2.67E-57	-1.69E-46
MS.gene054010	MS.gene95806	0.811848	5.70E-51	-1.69E-46
MS.gene054011	MS.gene95806	0.804074	2.57E-49	-1.69E-46
MS.gene054183	MS.gene95806	0.831647	1.48E-55	-1.69E-46
MS.gene054486	MS.gene95806	0.808788	2.61E-50	-1.69E-46
MS.gene054556	MS.gene95806	0.804069	2.58E-49	-1.69E-46
MS.gene05505	MS.gene95806	0.819114	1.38E-52	-1.69E-46
MS.gene055116	MS.gene95806	0.859187	4.92E-63	-1.69E-46
MS.gene055369	MS.gene95806	0.81497	1.17E-51	-1.69E-46
MS.gene055666	MS.gene95806	0.817463	3.25E-52	-1.69E-46
MS.gene055909	MS.gene95806	0.836673	8.15E-57	-1.69E-46
MS.gene055911	MS.gene95806	0.838595	2.62E-57	-1.69E-46
MS.gene056191	MS.gene95806	0.813679	2.27E-51	-1.69E-46
MS.gene056407	MS.gene95806	0.804363	2.24E-49	-1.69E-46
MS.gene056422	MS.gene95806	0.864204	1.44E-64	-1.69E-46
MS.gene056511	MS.gene95806	0.881242	2.83E-70	-1.69E-46
MS.gene05702	MS.gene95806	0.801556	8.52E-49	-1.69E-46
MS.gene057124	MS.gene95806	0.806784	6.95E-50	-1.69E-46
MS.gene057146	MS.gene95806	0.804038	2.62E-49	-1.69E-46
MS.gene057396	MS.gene95806	0.831737	1.41E-55	-1.69E-46
MS.gene057448	MS.gene95806	0.852715	3.85E-61	-1.69E-46
MS.gene057449	MS.gene95806	0.854242	1.40E-61	-1.69E-46
MS.gene057450	MS.gene95806	0.850269	1.89E-60	-1.69E-46
MS.gene057537	MS.gene95806	0.817056	4.02E-52	-1.69E-46
MS.gene057734	MS.gene95806	0.824136	9.50E-54	-1.69E-46
MS.gene057749	MS.gene95806	0.823307	1.49E-53	-1.69E-46
MS.gene057823	MS.gene95806	0.826731	2.31E-54	-1.69E-46
MS.gene058007	MS.gene95806	0.823563	1.30E-53	-1.69E-46
MS.gene058075	MS.gene95806	0.841584	4.35E-58	-1.69E-46
MS.gene05842	MS.gene95806	0.800235	1.59E-48	-1.69E-46
MS.gene058459	MS.gene95806	0.820986	5.13E-53	-1.69E-46
MS.gene05858	MS.gene95806	0.804864	1.76E-49	-1.69E-46
MS.gene058700	MS.gene95806	0.813807	2.12E-51	-1.69E-46
MS.gene058928	MS.gene95806	0.859222	4.80E-63	-1.69E-46
MS.gene058995	MS.gene95806	0.841997	3.38E-58	-1.69E-46
MS.gene05907	MS.gene95806	0.820138	8.04E-53	-1.69E-46
MS.gene059082	MS.gene95806	0.822963	1.79E-53	-1.69E-46
MS.gene059285	MS.gene95806	0.805215	1.49E-49	-1.69E-46
MS.gene059294	MS.gene95806	0.800031	1.74E-48	-1.69E-46
MS.gene059366	MS.gene95806	0.858839	6.25E-63	-1.69E-46
MS.gene059368	MS.gene95806	0.818274	2.14E-52	-1.69E-46
MS.gene059420	MS.gene95806	0.859587	3.73E-63	-1.69E-46
MS.gene059462	MS.gene95806	0.823736	1.18E-53	-1.69E-46
MS.gene059597	MS.gene95806	0.80486	1.76E-49	-1.69E-46
MS.gene059674	MS.gene95806	0.840288	9.51E-58	-1.69E-46
MS.gene059688	MS.gene95806	0.86211	6.39E-64	-1.69E-46
MS.gene059692	MS.gene95806	0.841188	5.53E-58	-1.69E-46
MS.gene059695	MS.gene95806	0.839193	1.83E-57	-1.69E-46
MS.gene059711	MS.gene95806	0.85624	3.68E-62	-1.69E-46
MS.gene059807	MS.gene95806	0.912804	1.28E-83	-1.69E-46
MS.gene059876	MS.gene95806	0.846654	1.90E-59	-1.69E-46
MS.gene059933	MS.gene95806	0.830688	2.55E-55	-1.69E-46
MS.gene060247	MS.gene95806	0.810172	1.32E-50	-1.69E-46
MS.gene060372	MS.gene95806	0.805883	1.08E-49	-1.69E-46
MS.gene060401	MS.gene95806	0.803195	3.91E-49	-1.69E-46
MS.gene060403	MS.gene95806	0.836908	7.10E-57	-1.69E-46
MS.gene060495	MS.gene95806	0.831908	1.28E-55	-1.69E-46
MS.gene060818	MS.gene95806	0.804488	2.11E-49	-1.69E-46
MS.gene060837	MS.gene95806	0.869171	3.78E-66	-1.69E-46
MS.gene060986	MS.gene95806	0.81261	3.89E-51	-1.69E-46
MS.gene061041	MS.gene95806	0.801753	7.76E-49	-1.69E-46
MS.gene061049	MS.gene95806	0.829395	5.27E-55	-1.69E-46
MS.gene061051	MS.gene95806	-0.830944	2.21E-55	-1.69E-46
MS.gene061154	MS.gene95806	0.826999	1.99E-54	-1.69E-46
MS.gene061159	MS.gene95806	0.821134	4.75E-53	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95806.t1	MTR_1g103050	98.611	72	1	0	1	72	1	72	3.90e-48	149

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 16 sgRNAs with CRISPR-Local

Find 23 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTGCATCCAATGATTCCTTT+AGG	0.352281	1.1:+73974790	None:intergenic
CTCTTACCTAAAGGAATCAT+TGG	0.362848	1.1:-73974796	MS.gene95806:CDS
TTTGAAAGCAGTTTCATCTA+AGG	0.366099	1.1:+73974746	None:intergenic
TTTCTTCTGTAGGCGTTGTT+TGG	0.381475	1.1:+73974722	None:intergenic
TGAATGGCTGGTAGGCTACC+TGG	0.496595	1.1:-73974891	MS.gene95806:CDS
CAACGCCTACAGAAGAAACT+TGG	0.500663	1.1:-73974717	MS.gene95806:CDS
GCTGGTAGGCTACCTGGCGT+TGG	0.518244	1.1:-73974885	MS.gene95806:CDS
GGATTTGATGTACCTGGAAG+AGG	0.518796	1.1:+73974683	None:intergenic
GGTAAAGAAGAGTGAATGGC+TGG	0.520572	1.1:-73974903	None:intergenic
CTACAGAGACTCTTACCTAA+AGG	0.529350	1.1:-73974805	MS.gene95806:CDS
AGTGACCAAGTTTCTTCTGT+AGG	0.561380	1.1:+73974712	None:intergenic
CTTGGTGACAATCCAACGCC+AGG	0.563291	1.1:+73974873	None:intergenic
GTAGTAGTCATTGAAGTCCA+TGG	0.592320	1.1:+73974768	None:intergenic
AAGAAGAGTGAATGGCTGGT+AGG	0.606425	1.1:-73974899	None:intergenic
CTTTAGGTAAGAGTCTCTGT+AGG	0.619274	1.1:+73974806	None:intergenic
AGGAATCATTGGATGCACCA+TGG	0.643184	1.1:-73974785	MS.gene95806:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAAAACTGTATTATTATGT+AGG	+	chr1.1:73974729-73974748	None:intergenic	15.0%
!!!	ATTTATTTTTTTTCTCTCTA+AGG	-	chr1.1:73974885-73974904	MS.gene95806:CDS	15.0%
!!	AGAATTTATACAAATTGTCT+AGG	-	chr1.1:73974803-73974822	MS.gene95806:CDS	20.0%
!!!	TAATTTTCTGATCTTTTTCT+TGG	+	chr1.1:73974536-73974555	None:intergenic	20.0%
!!!	TTTTTGAAGAAACAAGAAAT+TGG	-	chr1.1:73974752-73974771	MS.gene95806:CDS	20.0%
!!	TGTATAAATTCTAGCTAGTT+AGG	+	chr1.1:73974795-73974814	None:intergenic	25.0%
	TTTGAAAGCAGTTTCATCTA+AGG	+	chr1.1:73974645-73974664	None:intergenic	30.0%
	CTCTTACCTAAAGGAATCAT+TGG	-	chr1.1:73974592-73974611	MS.gene95806:intron	35.0%
	GAGTGTGCATAAGAAATATG+TGG	+	chr1.1:73974844-73974863	None:intergenic	35.0%
	TATGTAGGATTTGATGTACC+TGG	+	chr1.1:73974714-73974733	None:intergenic	35.0%
	AGTGACCAAGTTTCTTCTGT+AGG	+	chr1.1:73974679-73974698	None:intergenic	40.0%
	CTACAGAGACTCTTACCTAA+AGG	-	chr1.1:73974583-73974602	MS.gene95806:intron	40.0%
	CTTTAGGTAAGAGTCTCTGT+AGG	+	chr1.1:73974585-73974604	None:intergenic	40.0%
	GTAGTAGTCATTGAAGTCCA+TGG	+	chr1.1:73974623-73974642	None:intergenic	40.0%
	GTGCATCCAATGATTCCTTT+AGG	+	chr1.1:73974601-73974620	None:intergenic	40.0%
!	TTTCTTCTGTAGGCGTTGTT+TGG	+	chr1.1:73974669-73974688	None:intergenic	40.0%
	AGGAATCATTGGATGCACCA+TGG	-	chr1.1:73974603-73974622	MS.gene95806:intron	45.0%
	CAACGCCTACAGAAGAAACT+TGG	-	chr1.1:73974671-73974690	MS.gene95806:intron	45.0%
	GCACACTCACATGCATAGTA+AGG	-	chr1.1:73974856-73974875	MS.gene95806:CDS	45.0%
	GGATTTGATGTACCTGGAAG+AGG	+	chr1.1:73974708-73974727	None:intergenic	45.0%
!	GTCACTTCTTTTCCTCTTCC+AGG	-	chr1.1:73974693-73974712	MS.gene95806:intron	45.0%
!	CTTGGTGACAATCCAACGCC+AGG	+	chr1.1:73974518-73974537	None:intergenic	55.0%
	GCTGGTAGGCTACCTGGCGT+TGG	-	chr1.1:73974503-73974522	MS.gene95806:intron	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	73974500	73974910	73974500	ID=MS.gene95806
chr1.1	mRNA	73974500	73974910	73974500	ID=MS.gene95806.t1;Parent=MS.gene95806
chr1.1	exon	73974696	73974910	73974696	ID=MS.gene95806.t1.exon1;Parent=MS.gene95806.t1
chr1.1	CDS	73974696	73974910	73974696	ID=cds.MS.gene95806.t1;Parent=MS.gene95806.t1
chr1.1	exon	73974500	73974503	73974500	ID=MS.gene95806.t1.exon2;Parent=MS.gene95806.t1
chr1.1	CDS	73974500	73974503	73974500	ID=cds.MS.gene95806.t1;Parent=MS.gene95806.t1

Gene Sequence

>MS.gene95806

ATGGCTGGTAGGCTACCTGGCGTTGGATTGTCACCAAGAAAAAGATCAGAAAATTATCACAACAGACATGAACATTATGCTACCTACAGAGACTCTTACCTAAAGGAATCATTGGATGCACCATGGACTTCAATGACTACTACCTTAGATGAAACTGCTTTCAAAGCCAAACAACGCCTACAGAAGAAACTTGGTCACTTCTTTTCCTCTTCCAGGTACATCAAATCCTACATAATAATACAGTTTTTTTATTTTTTGAAGAAACAAGAAATTGGTTACTATTAATTTTGAGCCTAACTAGCTAGAATTTATACAAATTGTCTAGGCTTTTATTTAATTTTCCACATATTTCTTATGCACACTCACATGCATAGTAAGGAATTTAATTTATTTTTTTTCTCTCTAAGGTGA

Protein sequence

>MS.gene95806.t1

MAGRLPGVGLSPRKRSENYHNRHEHYATYRDSYLKESLDAPWTSMTTTLDETAFKAKQRLQKKLGHFFSSSR