AlfalfaGEDB | MsG0480022836.01

M. sativa cultivar ZhongmuNo.1 / MsG0480022836.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022836.01.T02	XP_013457403.1	95.652	115	5	0	1	115	1	115	7.11E-53	172
MsG0480022836.01.T01	XP_013457403.1	95.652	115	5	0	1	115	1	115	7.11E-53	172

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022836.01.T01	A0A072UNP9	95.652	115	5	0	1	115	1	115	3.40e-53	172
MsG0480022836.01.T02	A0A072UNP9	95.652	115	5	0	1	115	1	115	3.40e-53	172

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047869.01	MsG0480022836.01	0.803335	3.661536e-49	1.835093e-46
MsG0080047940.01	MsG0480022836.01	0.846253	2.438899e-59	4.172626e-56
MsG0080048113.01	MsG0480022836.01	0.812143	4.916522e-51	3.101318e-48
MsG0080048135.01	MsG0480022836.01	0.808285	3.337966e-50	1.900984e-47
MsG0080048971.01	MsG0480022836.01	0.803319	3.688842e-49	1.848026e-46
MsG0180000139.01	MsG0480022836.01	0.877144	7.953938e-69	3.957482e-65
MsG0180000575.01	MsG0480022836.01	0.842131	3.118610e-58	4.682972e-55
MsG0180000614.01	MsG0480022836.01	0.803168	3.964389e-49	1.978463e-46
MsG0180000743.01	MsG0480022836.01	0.823985	1.031513e-53	9.019701e-51
MsG0180002482.01	MsG0480022836.01	0.803624	3.190007e-49	1.610725e-46
MsG0180003302.01	MsG0480022836.01	0.821746	3.426650e-53	2.811911e-50
MsG0180003409.01	MsG0480022836.01	0.859397	4.255776e-63	1.122489e-59
MsG0180003669.01	MsG0480022836.01	0.819182	1.328286e-52	1.014889e-49
MsG0180004152.01	MsG0480022836.01	0.825382	4.831988e-54	4.397186e-51
MsG0180004389.01	MsG0480022836.01	0.805822	1.109002e-49	5.925496e-47
MsG0180004463.01	MsG0480022836.01	0.840339	9.226926e-58	1.310195e-54
MsG0180004481.01	MsG0480022836.01	0.842733	2.159372e-58	3.303993e-55
MsG0180004482.01	MsG0480022836.01	0.838810	2.305411e-57	3.123027e-54
MsG0180004509.01	MsG0480022836.01	0.854850	9.350911e-62	2.117188e-58
MsG0180004566.01	MsG0480022836.01	0.804190	2.433340e-49	1.246616e-46
MsG0180004854.01	MsG0480022836.01	0.810024	1.416041e-50	8.443867e-48
MsG0180005659.01	MsG0480022836.01	0.814587	1.428353e-51	9.622722e-49
MsG0180005664.01	MsG0480022836.01	0.807444	5.039451e-50	2.807306e-47
MsG0180005851.01	MsG0480022836.01	0.828298	9.715908e-55	9.617536e-52
MsG0180005954.01	MsG0480022836.01	0.819798	9.611012e-53	7.471145e-50
MsG0180006013.01	MsG0480022836.01	0.830721	2.503681e-55	2.659960e-52
MsG0180006261.01	MsG0480022836.01	0.822733	2.023034e-53	1.707614e-50
MsG0280006406.01	MsG0480022836.01	0.814882	1.228379e-51	8.341372e-49
MsG0280006407.01	MsG0480022836.01	0.838330	3.066489e-57	4.093378e-54
MsG0280006422.01	MsG0480022836.01	0.802962	4.374113e-49	2.171404e-46
MsG0280006424.01	MsG0480022836.01	0.801309	9.567192e-49	4.554149e-46
MsG0280010980.01	MsG0480022836.01	0.801282	9.692964e-49	4.610842e-46
MsG0280011014.01	MsG0480022836.01	0.805705	1.173427e-49	6.251209e-47
MsG0280011156.01	MsG0480022836.01	0.813362	2.659576e-51	1.733289e-48
MsG0280011388.01	MsG0480022836.01	0.824330	8.559146e-54	7.557437e-51
MsG0380012471.01	MsG0480022836.01	0.850151	2.043476e-60	3.965446e-57
MsG0380013178.01	MsG0480022836.01	0.814614	1.408323e-51	9.494818e-49
MsG0380014647.01	MsG0480022836.01	0.836608	8.471097e-57	1.072887e-53
MsG0480018477.01	MsG0480022836.01	0.818755	1.660763e-52	1.254086e-49
MsG0480018894.01	MsG0480022836.01	0.839079	1.963278e-57	2.681447e-54
MsG0480019486.01	MsG0480022836.01	0.830762	2.446886e-55	2.602663e-52
MsG0480020874.01	MsG0480022836.01	0.807880	4.071479e-50	2.293929e-47
MsG0480021448.01	MsG0480022836.01	0.805717	1.166303e-49	6.215211e-47
MsG0480021451.01	MsG0480022836.01	0.830384	3.027235e-55	3.184468e-52
MsG0480021453.01	MsG0480022836.01	0.823803	1.137618e-53	9.897594e-51
MsG0480021464.01	MsG0480022836.01	0.809377	1.949667e-50	1.142895e-47
MsG0480022052.01	MsG0480022836.01	-0.802017	6.848306e-49	3.318836e-46
MsG0480022164.01	MsG0480022836.01	0.839075	1.967708e-57	2.687169e-54
MsG0480022252.01	MsG0480022836.01	0.813516	2.460702e-51	1.610358e-48
MsG0480022795.01	MsG0480022836.01	0.872389	3.301426e-67	1.379048e-63
MsG0480022836.01	MsG0480023361.01	0.810444	1.149120e-50	6.927750e-48
MsG0480022836.01	MsG0480023707.01	0.828942	6.791328e-55	6.849549e-52
MsG0480022836.01	MsG0480023832.01	0.816603	5.079139e-52	3.615245e-49
MsG0480022836.01	MsG0580024390.01	0.823900	1.079518e-53	9.417708e-51
MsG0480022836.01	MsG0580027431.01	0.814601	1.417571e-51	9.553925e-49
MsG0480022836.01	MsG0680031488.01	0.803641	3.164583e-49	1.598569e-46
MsG0480022836.01	MsG0680031549.01	0.818661	1.744811e-52	1.314044e-49
MsG0480022836.01	MsG0680031628.01	0.802167	6.379728e-49	3.103599e-46
MsG0480022836.01	MsG0680033699.01	0.826769	2.261504e-54	2.140919e-51
MsG0480022836.01	MsG0680035692.01	0.801134	1.038973e-48	4.924137e-46
MsG0480022836.01	MsG0780036477.01	0.810890	9.203280e-51	5.615323e-48
MsG0480022836.01	MsG0780036815.01	0.819798	9.610663e-53	7.470942e-50
MsG0480022836.01	MsG0780038400.01	0.812046	5.162024e-51	3.247291e-48
MsG0480022836.01	MsG0780038587.01	0.804168	2.458436e-49	1.258803e-46
MsG0480022836.01	MsG0780038645.01	0.886769	2.564228e-72	1.855925e-68
MsG0480022836.01	MsG0780039137.01	0.852801	3.636078e-61	7.689789e-58
MsG0480022836.01	MsG0780039844.01	0.865137	7.341856e-65	2.363300e-61
MsG0480022836.01	MsG0780040841.01	0.835479	1.638890e-56	2.006556e-53
MsG0480022836.01	MsG0780040861.01	0.810284	1.244182e-50	7.469090e-48
MsG0480022836.01	MsG0780041224.01	0.816189	6.288077e-52	4.425418e-49
MsG0480022836.01	MsG0780041295.01	0.808646	2.796505e-50	1.607588e-47
MsG0480022836.01	MsG0780041402.01	0.832222	1.069118e-55	1.187280e-52
MsG0480022836.01	MsG0780041462.01	0.847000	1.524763e-59	2.672173e-56
MsG0480022836.01	MsG0780041535.01	0.804075	2.570825e-49	1.313271e-46
MsG0480022836.01	MsG0780041559.01	0.803586	3.247516e-49	1.638255e-46
MsG0480022836.01	MsG0880042232.01	0.823121	1.642886e-53	1.402017e-50
MsG0480022836.01	MsG0880042294.01	0.815322	9.809123e-52	6.741386e-49
MsG0480022836.01	MsG0880042519.01	0.800832	1.197772e-48	5.633188e-46
MsG0480022836.01	MsG0880042779.01	0.861644	8.878330e-64	2.529210e-60
MsG0480022836.01	MsG0880045653.01	0.827743	1.321865e-54	1.287450e-51
MsG0480022836.01	MsG0880046012.01	0.823151	1.616120e-53	1.380359e-50
MsG0480022836.01	MsG0880046631.01	0.802808	4.705862e-49	2.327124e-46
MsG0480022836.01	MsG0880046933.01	0.822672	2.089637e-53	1.760774e-50
MsG0480022836.01	MsG0880047427.01	0.843142	1.681041e-58	2.605399e-55
MsG0480022836.01	MsG0880047448.01	0.811139	8.127111e-51	4.991321e-48
MsG0380015027.01	MsG0480022836.01	0.804851	1.771388e-49	9.231733e-47
MsG0380015164.01	MsG0480022836.01	0.843631	1.244403e-58	1.959074e-55
MsG0380015168.01	MsG0480022836.01	0.810330	1.216434e-50	7.311461e-48
MsG0380015566.01	MsG0480022836.01	0.808827	2.557713e-50	1.477352e-47
MsG0380017382.01	MsG0480022836.01	0.817607	3.021214e-52	2.210358e-49
MsG0480018163.01	MsG0480022836.01	0.810933	9.009582e-51	5.503540e-48
MsG0280008885.01	MsG0480022836.01	0.811768	5.935291e-51	3.706064e-48
MsG0280009109.01	MsG0480022836.01	0.802468	5.530714e-49	2.711295e-46
MsG0280009140.01	MsG0480022836.01	0.808940	2.418819e-50	1.401327e-47
MsG0280009794.01	MsG0480022836.01	0.804110	2.528640e-49	1.292828e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022836.01.T02	MTR_4g094782	95.652	115	5	1	115	1	115	8.62e-57	172
MsG0480022836.01.T02	MTR_4g094782	91.304	69	6	1	69	1	69	1.51e-28	99.8
MsG0480022836.01.T01	MTR_4g094782	95.652	115	5	1	115	1	115	8.62e-57	172
MsG0480022836.01.T01	MTR_4g094782	91.304	69	6	1	69	1	69	1.51e-28	99.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 14 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCATCTTCATTATGTATT+TGG	0.145566	4:-77339986	MsG0480022836.01.T01:three_prime_UTR
CTTCAAGATTATATTGATAA+AGG	0.268428	4:+77339771	None:intergenic
ACTTATCCGTGCTAACATTA+TGG	0.295384	4:+77339924	None:intergenic
GTGCTATCTTCATTGTGTAC+TGG	0.320113	4:-77340065	MsG0480022836.01.T01:three_prime_UTR
TGCTATCTTCATTGTGTACT+GGG	0.430891	4:-77340064	MsG0480022836.01.T01:three_prime_UTR
TTTCTATTGTAGGTGGGTCT+CGG	0.435994	4:-77340104	MsG0480022836.01.T01:intron
GTCCAAATACATAATGAAGA+TGG	0.508607	4:+77339984	None:intergenic
CTAATCCATGTTCTTGAATG+TGG	0.554351	4:-77339848	MsG0480022836.01.T01:three_prime_UTR
AAATTCCACATTCAAGAACA+TGG	0.565574	4:+77339843	None:intergenic
ATAATGTTAGCACGGATAAG+TGG	0.569893	4:-77339922	MsG0480022836.01.T01:intron
ACAATAATTAAACATACCGC+TGG	0.573275	4:+77339742	None:intergenic
GGTACTCCATAATGTTAGCA+CGG	0.640940	4:-77339930	MsG0480022836.01.T01:intron
TATCACTAGAGTAGTTCGCA+TGG	0.649841	4:-77339818	MsG0480022836.01.T01:three_prime_UTR
AATCTTGAAGAATCTGCCAG+CGG	0.739205	4:-77339758	MsG0480022836.01.T01:three_prime_UTR

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ACATTTACAATATTTTAAAT+AGG	-	Chr4:77340222-77340241	MsG0480022836.01.T01:intron	10.0%
!!!	AGATCAAAATATAATTTTAT+TGG	-	Chr4:77342623-77342642	MsG0480022836.01.T01:five_prime_UTR	10.0%
!!!	ATTTATTTTAATTTACGAAT+TGG	-	Chr4:77340908-77340927	MsG0480022836.01.T01:intron	10.0%
!!!	GATCAAAATATAATTTTATT+GGG	-	Chr4:77342624-77342643	MsG0480022836.01.T01:five_prime_UTR	10.0%
!!!	TTTTTTGAAATTATTTAAGT+GGG	-	Chr4:77341780-77341799	MsG0480022836.01.T01:intron	10.0%
!!	AATGAAATAAATAGAAGAAA+GGG	+	Chr4:77339785-77339804	None:intergenic	15.0%
!!	AGTAATAATATATCTATCTA+TGG	+	Chr4:77340416-77340435	None:intergenic	15.0%
!!	ATTGAAAAAGAAGTTTAAAA+TGG	-	Chr4:77341059-77341078	MsG0480022836.01.T01:intron	15.0%
!!!	GTTTTTTGAAATTATTTAAG+TGG	-	Chr4:77341779-77341798	MsG0480022836.01.T01:intron	15.0%
!!!	TTTTTCTTTAATTTCATAGT+TGG	-	Chr4:77340755-77340774	MsG0480022836.01.T01:intron	15.0%
!!!	TTTTTGAAATTATTTAAGTG+GGG	-	Chr4:77341781-77341800	MsG0480022836.01.T01:intron	15.0%
!!	AACTACTTAAACAATAAAAG+TGG	+	Chr4:77340328-77340347	None:intergenic	20.0%
!!	AATATATCTATCTATGGAAT+TGG	+	Chr4:77340410-77340429	None:intergenic	20.0%
!!	ACCACAAAATGAAATAAAAA+AGG	+	Chr4:77340107-77340126	None:intergenic	20.0%
!!	ATATATCTATCTATGGAATT+GGG	+	Chr4:77340409-77340428	None:intergenic	20.0%
!!	ATTTACTTAGTACAAATGTA+GGG	-	Chr4:77340187-77340206	MsG0480022836.01.T01:intron	20.0%
!!	CTTCAAGATTATATTGATAA+AGG	+	Chr4:77342556-77342575	None:intergenic	20.0%
!!	GAAAATTGTATAAGTTAAAG+AGG	+	Chr4:77339808-77339827	None:intergenic	20.0%
!!	GAAATTGAAAGAGTAAAAAA+TGG	-	Chr4:77339871-77339890	MsG0480022836.01.T01:three_prime_UTR	20.0%
!!	GAATGAAATAAATAGAAGAA+AGG	+	Chr4:77339786-77339805	None:intergenic	20.0%
!!	GTTACAATTTATTTGTTTGT+AGG	-	Chr4:77341889-77341908	MsG0480022836.01.T01:intron	20.0%
!!	TATTTACTTAGTACAAATGT+AGG	-	Chr4:77340186-77340205	MsG0480022836.01.T01:intron	20.0%
!!	TGAAATAAAAAAGGAAAAAG+TGG	+	Chr4:77340098-77340117	None:intergenic	20.0%
!!	TTATTTGTTTGTAGGTATAT+GGG	-	Chr4:77341897-77341916	MsG0480022836.01.T01:intron	20.0%
!!	TTTATTTGTTTGTAGGTATA+TGG	-	Chr4:77341896-77341915	MsG0480022836.01.T01:intron	20.0%
!!!	AATAAATTGTAACTGATTTG+TGG	+	Chr4:77341882-77341901	None:intergenic	20.0%
!!!	CTTAAATGGATATATTTTTC+TGG	-	Chr4:77341672-77341691	MsG0480022836.01.T01:intron	20.0%
!!!	TACTGTTTTTAGATATATTG+AGG	-	Chr4:77342373-77342392	MsG0480022836.01.T01:CDS	20.0%
!!!	TCCTTTTTTATTTCATTTTG+TGG	-	Chr4:77340103-77340122	MsG0480022836.01.T01:intron	20.0%
!!!	TTTTTCTTTCTTAAATCACA+TGG	+	Chr4:77341308-77341327	None:intergenic	20.0%
!	AAAAACCCAATTCAATTTGA+AGG	+	Chr4:77340598-77340617	None:intergenic	25.0%
!	AAAACCCAATTCAATTTGAA+GGG	+	Chr4:77340597-77340616	None:intergenic	25.0%
!	AAAACTTACTTTCATTGTTG+AGG	+	Chr4:77341764-77341783	None:intergenic	25.0%
!	AACCATCTTCATTATGTATT+TGG	-	Chr4:77342338-77342357	MsG0480022836.01.T01:CDS	25.0%
!	ATCATAACAATAGCTTCAAA+AGG	+	Chr4:77340701-77340720	None:intergenic	25.0%
!	ATGTAATTCTGTAGCTTAAA+TGG	-	Chr4:77341658-77341677	MsG0480022836.01.T01:intron	25.0%
!	ATTTAACTAGTTCAAGTACA+AGG	+	Chr4:77341510-77341529	None:intergenic	25.0%
!	CAAGATAAAAAGTAAAAACG+TGG	+	Chr4:77341188-77341207	None:intergenic	25.0%
!	CAATTGCATCAATTTATTGT+CGG	-	Chr4:77341532-77341551	MsG0480022836.01.T01:intron	25.0%
!	GATTGTTTATCTGATTCATT+AGG	-	Chr4:77341922-77341941	MsG0480022836.01.T01:intron	25.0%
!	GGATAAGTTAAAAAGAGTAA+AGG	+	Chr4:77342062-77342081	None:intergenic	25.0%
!	GTAATTGTCAAACAAAAGTA+TGG	+	Chr4:77342097-77342116	None:intergenic	25.0%
!	TACATGAGTAAAGAAAACTA+AGG	+	Chr4:77341228-77341247	None:intergenic	25.0%
!	TTAATTTACGAATTGGCATT+TGG	-	Chr4:77340915-77340934	MsG0480022836.01.T01:intron	25.0%
!	TTCAAAAGGAAAAACAACAA+AGG	+	Chr4:77340821-77340840	None:intergenic	25.0%
!	TTTGTTTGACAATTACTGAT+GGG	-	Chr4:77342101-77342120	MsG0480022836.01.T01:intron	25.0%
!!	AAGAAGTTTAAAATGGCTAA+AGG	-	Chr4:77341066-77341085	MsG0480022836.01.T01:intron	25.0%
!!	ATTTATTGTCGGTTAAACTT+CGG	-	Chr4:77341543-77341562	MsG0480022836.01.T01:intron	25.0%
!!	CAAACAAAAGTATGGTAAAA+AGG	+	Chr4:77342089-77342108	None:intergenic	25.0%
!!!	AAAACAGAAATGGGTTTTTA+GGG	+	Chr4:77340670-77340689	None:intergenic	25.0%
!!!	GTTTTTGAATTTTCAAGATG+TGG	-	Chr4:77340975-77340994	MsG0480022836.01.T01:intron	25.0%
!!!	TTTTGTTTGACAATTACTGA+TGG	-	Chr4:77342100-77342119	MsG0480022836.01.T01:intron	25.0%
	AAATTCCACATTCAAGAACA+TGG	+	Chr4:77342484-77342503	None:intergenic	30.0%
	ACAATAAAAGTGGAGAACAA+AGG	+	Chr4:77340318-77340337	None:intergenic	30.0%
	ACAATAATTAAACATACCGC+TGG	+	Chr4:77342585-77342604	None:intergenic	30.0%
	AGTACTAATGCTAAGTGAAA+GGG	+	Chr4:77341621-77341640	None:intergenic	30.0%
	ATTCTCATACATAAAGGTGA+TGG	+	Chr4:77341251-77341270	None:intergenic	30.0%
	CTTTGTTACCTTTCTATTGT+AGG	-	Chr4:77342210-77342229	MsG0480022836.01.T01:intron	30.0%
	GAAAGAGAAAGAGAAAAAGA+AGG	+	Chr4:77340555-77340574	None:intergenic	30.0%
	GATAAAAAGTAAAAACGTGG+CGG	+	Chr4:77341185-77341204	None:intergenic	30.0%
	GTAGAGATTCTCATACATAA+AGG	+	Chr4:77341257-77341276	None:intergenic	30.0%
	GTCCAAATACATAATGAAGA+TGG	+	Chr4:77342343-77342362	None:intergenic	30.0%
	TAAATATAAAACACGCTGCA+AGG	+	Chr4:77340893-77340912	None:intergenic	30.0%
	TAATAGCTGTGTATCAAATC+TGG	-	Chr4:77341978-77341997	MsG0480022836.01.T01:intron	30.0%
	TATCTGATTCATTAGGTTTG+AGG	-	Chr4:77341929-77341948	MsG0480022836.01.T01:intron	30.0%
	TTCTATTTGCCAAAAACTAG+AGG	-	Chr4:77341816-77341835	MsG0480022836.01.T01:intron	30.0%
!	GTAGTGGAATAAGTAAGTTA+TGG	-	Chr4:77341355-77341374	MsG0480022836.01.T01:intron	30.0%
!	GTGTTATGTCTTTAGTTTAG+CGG	-	Chr4:77340125-77340144	MsG0480022836.01.T01:intron	30.0%
!	TGCATCACTCATTTTCTATT+GGG	+	Chr4:77340272-77340291	None:intergenic	30.0%
!	TTGCATCACTCATTTTCTAT+TGG	+	Chr4:77340273-77340292	None:intergenic	30.0%
!	TTGTTTGTTGAAATTGAAGC+AGG	-	Chr4:77339843-77339862	MsG0480022836.01.T01:three_prime_UTR	30.0%
!	TTTCATAGTTGGAGTTTTCT+TGG	-	Chr4:77340766-77340785	MsG0480022836.01.T01:intron	30.0%
!!	CCAAAAACTAGAGGTATTAA+AGG	-	Chr4:77341825-77341844	MsG0480022836.01.T01:intron	30.0%
!!	GAAAACAGAAATGGGTTTTT+AGG	+	Chr4:77340671-77340690	None:intergenic	30.0%
!!!	CCTTTAATACCTCTAGTTTT+TGG	+	Chr4:77341828-77341847	None:intergenic	30.0%
!!!	CTTGTTTGTGTTGTTTGTTT+TGG	+	Chr4:77340451-77340470	None:intergenic	30.0%
!!!	TTGTGTTGTTTGTTTTGGAA+GGG	+	Chr4:77340446-77340465	None:intergenic	30.0%
!!!	TTTGTGTTGTTTGTTTTGGA+AGG	+	Chr4:77340447-77340466	None:intergenic	30.0%
	AAAGTATGGTAAAAAGGACG+AGG	+	Chr4:77342083-77342102	None:intergenic	35.0%
	AACAACACAAACAAGAAGCT+TGG	-	Chr4:77340456-77340475	MsG0480022836.01.T01:intron	35.0%
	AACAATAGCTTCAAAAGGCT+TGG	+	Chr4:77340696-77340715	None:intergenic	35.0%
	ACTTATCCGTGCTAACATTA+TGG	+	Chr4:77342403-77342422	None:intergenic	35.0%
	AGGTTAAGTTACAGGCATTT+AGG	+	Chr4:77341469-77341488	None:intergenic	35.0%
	ATAATGTTAGCACGGATAAG+TGG	-	Chr4:77342402-77342421	MsG0480022836.01.T01:CDS	35.0%
	ATACCATTAGCACTCACTAT+TGG	+	Chr4:77341143-77341162	None:intergenic	35.0%
	ATTCCAATAGTGAGTGCTAA+TGG	-	Chr4:77341137-77341156	MsG0480022836.01.T01:intron	35.0%
	CTAAGGCATGAAATATGCAA+TGG	+	Chr4:77341211-77341230	None:intergenic	35.0%
	CTAATCCATGTTCTTGAATG+TGG	-	Chr4:77342476-77342495	MsG0480022836.01.T01:intron	35.0%
	CTGGCAATATTTAGGAACTA+AGG	+	Chr4:77341712-77341731	None:intergenic	35.0%
	GAGTACTAATGCTAAGTGAA+AGG	+	Chr4:77341622-77341641	None:intergenic	35.0%
	GCTTCTTTCTTGTCATAGAA+AGG	+	Chr4:77339959-77339978	None:intergenic	35.0%
	GCTTGGAAGAAAACAGAAAT+GGG	+	Chr4:77340679-77340698	None:intergenic	35.0%
	GGTTAAGTTACAGGCATTTA+GGG	+	Chr4:77341468-77341487	None:intergenic	35.0%
	GTGGAATAAGTAAGTTATGG+TGG	-	Chr4:77341358-77341377	MsG0480022836.01.T01:intron	35.0%
	GTTAAGTTACAGGCATTTAG+GGG	+	Chr4:77341467-77341486	None:intergenic	35.0%
	GTTACCTTTCTATTGTAGGT+GGG	-	Chr4:77342214-77342233	MsG0480022836.01.T01:intron	35.0%
	GTTGTTAGATTACCTGGTTA+GGG	+	Chr4:77339763-77339782	None:intergenic	35.0%
	TGCTATCTTCATTGTGTACT+GGG	-	Chr4:77342260-77342279	MsG0480022836.01.T01:CDS	35.0%
	TGTTACCTTTCTATTGTAGG+TGG	-	Chr4:77342213-77342232	MsG0480022836.01.T01:intron	35.0%
	TTACTTATTCCACTACTGAC+AGG	+	Chr4:77341351-77341370	None:intergenic	35.0%
	TTTGTTTGTAGGTATATGGG+AGG	-	Chr4:77341900-77341919	MsG0480022836.01.T01:intron	35.0%
!	CAAATGTGCTGGCAATATTT+AGG	+	Chr4:77341720-77341739	None:intergenic	35.0%
!!	GAATTTTCAAGATGTGGAGA+TGG	-	Chr4:77340981-77341000	MsG0480022836.01.T01:intron	35.0%
!!	TTGGCTTTGAATTACCATTG+CGG	+	Chr4:77341098-77341117	None:intergenic	35.0%
!!	TTTTGAAAGATCTGTCACAG+TGG	+	Chr4:77340630-77340649	None:intergenic	35.0%
!!!	CACTGATTTTGTTTTTGCTG+GGG	-	Chr4:77340789-77340808	MsG0480022836.01.T01:intron	35.0%
!!!	GCACTGATTTTGTTTTTGCT+GGG	-	Chr4:77340788-77340807	MsG0480022836.01.T01:intron	35.0%
	AAAGGAAAAAGTGGTACCCA+TGG	+	Chr4:77340089-77340108	None:intergenic	40.0%
	AATCTTGAAGAATCTGCCAG+CGG	-	Chr4:77342566-77342585	MsG0480022836.01.T01:intron	40.0%
	ACAAGAAGCTTGGAACTTGA+AGG	-	Chr4:77340466-77340485	MsG0480022836.01.T01:intron	40.0%
	ACCCAATTCAATTTGAAGGG+AGG	+	Chr4:77340594-77340613	None:intergenic	40.0%
	ACTATCAACAACAACGCCAT+GGG	-	Chr4:77340070-77340089	MsG0480022836.01.T01:three_prime_UTR	40.0%
	AGGTATTAAAGGAAAAGCCG+AGG	-	Chr4:77341836-77341855	MsG0480022836.01.T01:intron	40.0%
	CATATGTGACGCTTTCTACT+TGG	+	Chr4:77341117-77341136	None:intergenic	40.0%
	CATCTTTATCCTGTCAGTAG+TGG	-	Chr4:77341339-77341358	MsG0480022836.01.T01:intron	40.0%
	CCCAATTCAATTTGAAGGGA+GGG	+	Chr4:77340593-77340612	None:intergenic	40.0%
	CCCTCCCTTCAAATTGAATT+GGG	-	Chr4:77340590-77340609	MsG0480022836.01.T01:intron	40.0%
	CTTTGATGAAAAGGAGTTGG+CGG	+	Chr4:77340494-77340513	None:intergenic	40.0%
	GAAAGGGTTGTTAGATTACC+TGG	+	Chr4:77339769-77339788	None:intergenic	40.0%
	GAAGTCAATGAGATCGAAGA+GGG	-	Chr4:77339895-77339914	MsG0480022836.01.T01:intron	40.0%
	GATAGCAGAAGGGTTTGTAT+TGG	+	Chr4:77339698-77339717	None:intergenic	40.0%
	GGCTTGGAAGAAAACAGAAA+TGG	+	Chr4:77340680-77340699	None:intergenic	40.0%
	GGTACTCCATAATGTTAGCA+CGG	-	Chr4:77342394-77342413	MsG0480022836.01.T01:CDS	40.0%
	GGTATTAAAGGAAAAGCCGA+GGG	-	Chr4:77341837-77341856	MsG0480022836.01.T01:intron	40.0%
	GGTTGTTAGATTACCTGGTT+AGG	+	Chr4:77339764-77339783	None:intergenic	40.0%
	GTGCTATCTTCATTGTGTAC+TGG	-	Chr4:77342259-77342278	MsG0480022836.01.T01:CDS	40.0%
	GTTGAAATTGAAGCAGGAAG+TGG	-	Chr4:77339849-77339868	MsG0480022836.01.T01:three_prime_UTR	40.0%
	TAATCACTGCCCTACTCTTT+CGG	+	Chr4:77340359-77340378	None:intergenic	40.0%
	TATCACTAGAGTAGTTCGCA+TGG	-	Chr4:77342506-77342525	MsG0480022836.01.T01:intron	40.0%
	TATTCTACCAACAGGCTTCA+AGG	+	Chr4:77341031-77341050	None:intergenic	40.0%
	TATTGCCAGCACATTTGACT+CGG	-	Chr4:77341723-77341742	MsG0480022836.01.T01:intron	40.0%
	TCCCTCCCTTCAAATTGAAT+TGG	-	Chr4:77340589-77340608	MsG0480022836.01.T01:intron	40.0%
	TTCTTCCCTATTCTACCAAC+AGG	+	Chr4:77341039-77341058	None:intergenic	40.0%
	TTTCTATTGTAGGTGGGTCT+CGG	-	Chr4:77342220-77342239	MsG0480022836.01.T01:intron	40.0%
	TTTGAGAGCAGCATATGTCT+TGG	+	Chr4:77341393-77341412	None:intergenic	40.0%
!	CCAACTCCTTTTCATCAAAG+GGG	-	Chr4:77340494-77340513	MsG0480022836.01.T01:intron	40.0%
!	GCCAACTCCTTTTCATCAAA+GGG	-	Chr4:77340493-77340512	MsG0480022836.01.T01:intron	40.0%
!	GTAAAAACGTGGCGGAAAAT+AGG	+	Chr4:77341177-77341196	None:intergenic	40.0%
!	TCCTTTTCATCAAAGGGGTT+TGG	-	Chr4:77340499-77340518	MsG0480022836.01.T01:intron	40.0%
!	TGAAGCCTGTTGGTAGAATA+GGG	-	Chr4:77341031-77341050	MsG0480022836.01.T01:intron	40.0%
!	TTGAAGCCTGTTGGTAGAAT+AGG	-	Chr4:77341030-77341049	MsG0480022836.01.T01:intron	40.0%
!!	GTTGTTGTTGATAGTGGAAG+TGG	+	Chr4:77340065-77340084	None:intergenic	40.0%
!!	TTCCTTTTGAAGATTCAGCG+CGG	-	Chr4:77340830-77340849	MsG0480022836.01.T01:intron	40.0%
!!!	GATGCTGTGCTGTTTTAATG+AGG	+	Chr4:77342142-77342161	None:intergenic	40.0%
!!!	GGCACTGATTTTGTTTTTGC+TGG	-	Chr4:77340787-77340806	MsG0480022836.01.T01:intron	40.0%
	AACAGGCTTCAAGGAAGTCT+TGG	+	Chr4:77341022-77341041	None:intergenic	45.0%
	AAGACTTCCTTGAAGCCTGT+TGG	-	Chr4:77341021-77341040	MsG0480022836.01.T01:intron	45.0%
	AAGTACAAGGCTTAGCACAG+TGG	+	Chr4:77341497-77341516	None:intergenic	45.0%
	ACTTCCATGGAAGTGGTTGA+TGG	+	Chr4:77340040-77340059	None:intergenic	45.0%
	AGTGAATGCGAGAAGGAAAG+AGG	+	Chr4:77339729-77339748	None:intergenic	45.0%
	AGTGGAAACTTCCATGGAAG+TGG	+	Chr4:77340047-77340066	None:intergenic	45.0%
	AGTGGAAGTGGAAACTTCCA+TGG	+	Chr4:77340053-77340072	None:intergenic	45.0%
	CACTATCAACAACAACGCCA+TGG	-	Chr4:77340069-77340088	MsG0480022836.01.T01:three_prime_UTR	45.0%
	CCCCTTTGATGAAAAGGAGT+TGG	+	Chr4:77340497-77340516	None:intergenic	45.0%
	CGAAGTCAATGAGATCGAAG+AGG	-	Chr4:77339894-77339913	MsG0480022836.01.T01:intron	45.0%
	CGAATTGGCATTTGGTTGCT+TGG	-	Chr4:77340923-77340942	MsG0480022836.01.T01:intron	45.0%
	CTGCAAGGAGTAGTCAATCA+CGG	+	Chr4:77340878-77340897	None:intergenic	45.0%
	CTTCCATGGAAGTGGTTGAT+GGG	+	Chr4:77340039-77340058	None:intergenic	45.0%
	GAAAGAGTAGGGCAGTGATT+AGG	-	Chr4:77340358-77340377	MsG0480022836.01.T01:intron	45.0%
	GAGACCCACCTACAATAGAA+AGG	+	Chr4:77342221-77342240	None:intergenic	45.0%
	GCCAAACCCCTTTGATGAAA+AGG	+	Chr4:77340503-77340522	None:intergenic	45.0%
	TGGTGTGGAGGTTAAGTTAC+AGG	+	Chr4:77341477-77341496	None:intergenic	45.0%
	TTCGAAGCTAAACCCTAACC+AGG	-	Chr4:77339748-77339767	MsG0480022836.01.T01:three_prime_UTR	45.0%
!	CATGGCGTTGTTGTTGATAG+TGG	+	Chr4:77340071-77340090	None:intergenic	45.0%
!	CGCCAACTCCTTTTCATCAA+AGG	-	Chr4:77340492-77340511	MsG0480022836.01.T01:intron	45.0%
!	GCTTTGAATTACCATTGCGG+CGG	+	Chr4:77341095-77341114	None:intergenic	45.0%
!	TCATCAAAGGGGTTTGGCTT+TGG	-	Chr4:77340505-77340524	MsG0480022836.01.T01:intron	45.0%
	CAAGATGTGGAGATGGCTGA+TGG	-	Chr4:77340988-77341007	MsG0480022836.01.T01:intron	50.0%
	GACAACCGAGTCAAATGTGC+TGG	+	Chr4:77341731-77341750	None:intergenic	50.0%
	GCTTCGAAGTGAATGCGAGA+AGG	+	Chr4:77339736-77339755	None:intergenic	50.0%
	GGCAGTGATTAGGAAGAGAG+AGG	-	Chr4:77340368-77340387	MsG0480022836.01.T01:intron	50.0%
	GTCCGCGCTGAATCTTCAAA+AGG	+	Chr4:77340835-77340854	None:intergenic	50.0%
	TCTTGCTGCTCCTAAGCTTC+AGG	-	Chr4:77340006-77340025	MsG0480022836.01.T01:three_prime_UTR	50.0%
	TGAGATCGAAGAGGGAGAAG+AGG	-	Chr4:77339903-77339922	MsG0480022836.01.T01:intron	50.0%
	TTTGCCGAGCCGAAAGAGTA+GGG	-	Chr4:77340347-77340366	MsG0480022836.01.T01:intron	50.0%
!	TTTTGCCGAGCCGAAAGAGT+AGG	-	Chr4:77340346-77340365	MsG0480022836.01.T01:intron	50.0%
!!	CATGGAAGTGGTTGATGGGA+CGG	+	Chr4:77340035-77340054	None:intergenic	50.0%
	ACTGCCCTACTCTTTCGGCT+CGG	+	Chr4:77340354-77340373	None:intergenic	55.0%
	AGGAAGAGAGAGGACTCGAG+TGG	-	Chr4:77340378-77340397	MsG0480022836.01.T01:intron	55.0%
	CAAGGCTTAGCACAGTGGTG+TGG	+	Chr4:77341492-77341511	None:intergenic	55.0%
	CGTCCCATCAACCACTTCCA+TGG	-	Chr4:77340033-77340052	MsG0480022836.01.T01:three_prime_UTR	55.0%
	GAGAAGGAAAGAGGCAGAGG+CGG	+	Chr4:77339720-77339739	None:intergenic	55.0%
	GGAAGAGAGAGGACTCGAGT+GGG	-	Chr4:77340379-77340398	MsG0480022836.01.T01:intron	55.0%
	GGGACGGAAACCTGAAGCTT+AGG	+	Chr4:77340019-77340038	None:intergenic	55.0%
	TGCGAGAAGGAAAGAGGCAG+AGG	+	Chr4:77339723-77339742	None:intergenic	55.0%
	AGGCAGAGGCGGATAGCAGA+AGG	+	Chr4:77339709-77339728	None:intergenic	60.0%
	GCCAACGTCTTCAGAGCCCT+CGG	+	Chr4:77341856-77341875	None:intergenic	60.0%
	GCTAAAGGCAACCGCCGCAA+TGG	-	Chr4:77341081-77341100	MsG0480022836.01.T01:intron	60.0%
	GGCAGAGGCGGATAGCAGAA+GGG	+	Chr4:77339708-77339727	None:intergenic	60.0%
	GGCTTAGCACAGTGGTGTGG+AGG	+	Chr4:77341489-77341508	None:intergenic	60.0%
!!	GCCGAGGGCTCTGAAGACGT+TGG	-	Chr4:77341852-77341871	MsG0480022836.01.T01:intron	65.0%

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	77339697	77342649	77339697	ID=MsG0480022836.01;Name=MsG0480022836.01
Chr4	mRNA	77339697	77342649	77339697	ID=MsG0480022836.01.T01;Parent=MsG0480022836.01;Name=MsG0480022836.01.T01;_AED=0.36;_eAED=0.36;_QI=98\|1\|1\|1\|0.25\|0\|5\|362\|115
Chr4	exon	77339697	77339897	77339697	ID=MsG0480022836.01.T01:exon:11039;Parent=MsG0480022836.01.T01
Chr4	exon	77339975	77340114	77339975	ID=MsG0480022836.01.T01:exon:11038;Parent=MsG0480022836.01.T01
Chr4	five_prime_UTR	77342577	77342649	77342577	ID=MsG0480022836.01.T01:five_prime_utr;Parent=MsG0480022836.01.T01
Chr4	five_prime_UTR	77342457	77342481	77342457	ID=MsG0480022836.01.T01:five_prime_utr;Parent=MsG0480022836.01.T01
Chr4	CDS	77342255	77342456	77342255	ID=MsG0480022836.01.T01:cds;Parent=MsG0480022836.01.T01
Chr4	CDS	77341209	77341354	77341209	ID=MsG0480022836.01.T01:cds;Parent=MsG0480022836.01.T01
Chr4	three_prime_UTR	77341188	77341208	77341188	ID=MsG0480022836.01.T01:three_prime_utr;Parent=MsG0480022836.01.T01
Chr4	three_prime_UTR	77339975	77340114	77339975	ID=MsG0480022836.01.T01:three_prime_utr;Parent=MsG0480022836.01.T01
Chr4	three_prime_UTR	77339697	77339897	77339697	ID=MsG0480022836.01.T01:three_prime_utr;Parent=MsG0480022836.01.T01
Chr4	mRNA	77339835	77342649	77339835	ID=MsG0480022836.01.T02;Parent=MsG0480022836.01;Name=MsG0480022836.01.T02;_AED=0.38;_eAED=0.38;_QI=98\|1\|1\|1\|0.33\|0.25\|4\|301\|115
Chr4	exon	77339835	77340114	77339835	ID=MsG0480022836.01.T02:exon:11040;Parent=MsG0480022836.01.T02
Chr4	five_prime_UTR	77342577	77342649	77342577	ID=MsG0480022836.01.T02:five_prime_utr;Parent=MsG0480022836.01.T02
Chr4	five_prime_UTR	77342457	77342481	77342457	ID=MsG0480022836.01.T02:five_prime_utr;Parent=MsG0480022836.01.T02
Chr4	CDS	77342255	77342456	77342255	ID=MsG0480022836.01.T02:cds;Parent=MsG0480022836.01.T02
Chr4	CDS	77341209	77341354	77341209	ID=MsG0480022836.01.T02:cds;Parent=MsG0480022836.01.T02
Chr4	three_prime_UTR	77341188	77341208	77341188	ID=MsG0480022836.01.T02:three_prime_utr;Parent=MsG0480022836.01.T02
Chr4	three_prime_UTR	77339835	77340114	77339835	ID=MsG0480022836.01.T02:three_prime_utr;Parent=MsG0480022836.01.T02

Gene Sequence

>MsG0480022836.01.T02

ATGGCGAAGTCAATGAGATCGAAGAGGGAGAAGAGGTTGAGAGCTATTAGAAGAGAGATTGTTGAACCTTTCTATGACAAGAAAGAAGCTGCTAAGCTTGCTGCTCAAGAAGCTGCTCTTGCTGCTCCTAAGCTTCAGGTTTCCGTCCCATCAACCACTTCCATGGAAGTTTCCACTTCCACTATCAACAACAACGCCATGGATGTGGAGATGGCTGATGGAAATCAGACCAAGACTTCCTTGAAGCCTGTTGGTAGAATAGGGAAGAAATTGAAAAAGAAGTTTAAAATGGCTAAAGGCAACCGCCGCAATGGTAATTCAAAGCCAAGTAGAAAGCGTCACATATGA

>MsG0480022836.01.T01

Protein sequence

>MsG0480022836.01.T02

MAKSMRSKREKRLRAIRREIVEPFYDKKEAAKLAAQEAALAAPKLQVSVPSTTSMEVSTSTINNNAMDVEMADGNQTKTSLKPVGRIGKKLKKKFKMAKGNRRNGNSKPSRKRHI*

>MsG0480022836.01.T01

MAKSMRSKREKRLRAIRREIVEPFYDKKEAAKLAAQEAALAAPKLQVSVPSTTSMEVSTSTINNNAMDVEMADGNQTKTSLKPVGRIGKKLKKKFKMAKGNRRNGNSKPSRKRHI*