AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019573.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019573.01.T01 MTR_4g033475 85.276 163 13 4 1 156 1 159 2.61e-86 253
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019573.01.T01 AT2G44870 57.692 104 42 1 53 156 46 147 5.90e-25 96.7

Find 86 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCAAAATGCATACAATTT+TGG 0.079276 4:+22406212 MsG0480019573.01.T01:three_prime_UTR
GGCCAACAGCTTAGTTATTA+AGG 0.209445 4:+22405151 MsG0480019573.01.T01:three_prime_UTR
CAAGTTACCGATTCTCATTC+TGG 0.232252 4:+22405994 MsG0480019573.01.T01:three_prime_UTR
TCTTTCTTCCCTTCGCTTGC+TGG 0.239923 4:-22400050 None:intergenic
AAGAAATCCCCTTTGCCTTT+AGG 0.251311 4:-22405883 None:intergenic
TTTGCTGGACCTCTTCTAAT+TGG 0.264317 4:+22405122 MsG0480019573.01.T01:three_prime_UTR
ACCTAAGAATCCTGCCTATA+TGG 0.268975 4:-22406238 None:intergenic
GCCATATAGGCAGGATTCTT+AGG 0.286597 4:+22406237 MsG0480019573.01.T01:three_prime_UTR
TTCATCTGGTTTGCATTCTC+TGG 0.294791 4:+22405056 MsG0480019573.01.T01:three_prime_UTR
GTGGCGGTGACGGCGGTTGA+AGG 0.301958 4:-22400200 None:intergenic
TAATATGATGATAGCATAGA+TGG 0.314348 4:+22406153 MsG0480019573.01.T01:three_prime_UTR
TTGCAGAAAATTTCTTCATC+TGG 0.321648 4:+22405042 MsG0480019573.01.T01:intron
CGTCTGTTTGGTTTGGGAAA+TGG 0.326761 4:-22400086 None:intergenic
AAGTCAACATCAATGATGTT+AGG 0.328672 4:-22405946 None:intergenic
CAACAATAAACCAAATGATA+TGG 0.333595 4:+22400261 MsG0480019573.01.T01:CDS
CATCATTGATGTTGACTTTG+AGG 0.354126 4:+22405951 MsG0480019573.01.T01:three_prime_UTR
TCTGGTTTGCATTCTCTGGC+TGG 0.360142 4:+22405060 MsG0480019573.01.T01:three_prime_UTR
GTACCCATGTTGCGATTATC+AGG 0.365106 4:-22405094 None:intergenic
ACATGGGTACTTCCATTTGC+TGG 0.369935 4:+22405107 MsG0480019573.01.T01:three_prime_UTR
AACTAACCCTAGGCCAGTTA+AGG 0.370985 4:-22400495 None:intergenic
AAAACCCTATCCATATCATT+TGG 0.381924 4:-22400271 None:intergenic
AATTGCAAGACGCAGTTTGC+CGG 0.382295 4:+22405808 MsG0480019573.01.T01:three_prime_UTR
ATTGTTGCGTCTGTTTGGTT+TGG 0.388800 4:-22400093 None:intergenic
TTCTTGAATGAGACTGTTAC+GGG 0.394388 4:-22400232 None:intergenic
TTGCTGGACCTCTTCTAATT+GGG 0.399505 4:+22405123 MsG0480019573.01.T01:three_prime_UTR
ATATATATTCGTTTAATCTC+CGG 0.399981 4:+22406051 MsG0480019573.01.T01:three_prime_UTR
GGTTTGGGAAATGGAGTGTT+TGG 0.401544 4:-22400077 None:intergenic
GTGGTTGTTGTTGTTGATAT+CGG 0.406118 4:-22400168 None:intergenic
AAAGGGGATTTCTTTAATAG+AGG 0.412896 4:+22405892 MsG0480019573.01.T01:three_prime_UTR
ACTGTAAACTATATCCAAAA+TGG 0.415512 4:-22406375 None:intergenic
TTGTTGCGTCTGTTTGGTTT+GGG 0.415873 4:-22400092 None:intergenic
AACTACTTGATTCTTGTAAC+CGG 0.423852 4:-22405827 None:intergenic
AGGCCAGTTAAGGGCAAAAT+CGG 0.432734 4:-22400485 None:intergenic
ATGAGACTGTTACGGGTTGC+CGG 0.446119 4:-22400225 None:intergenic
GTTGCCGGTGGTGGCGGTGA+CGG 0.453861 4:-22400210 None:intergenic
CGGTGACGGCGGTTGAAGGG+TGG 0.455893 4:-22400196 None:intergenic
GCAAACTGCGTCTTGCAATT+CGG 0.456190 4:-22405805 None:intergenic
GTTCTTGAATGAGACTGTTA+CGG 0.457562 4:-22400233 None:intergenic
CTGTTACGGGTTGCCGGTGG+TGG 0.471361 4:-22400219 None:intergenic
ATTAGAAGAGGTCCAGCAAA+TGG 0.472232 4:-22405119 None:intergenic
TATATATTCGTTTAATCTCC+GGG 0.477617 4:+22406052 MsG0480019573.01.T01:three_prime_UTR
GTATGAAGCGCATATAGTTT+CGG 0.482437 4:+22406112 MsG0480019573.01.T01:three_prime_UTR
AGTCAACATCAATGATGTTA+GGG 0.485103 4:-22405945 None:intergenic
ATAAACCAAATGATATGGAT+AGG 0.489253 4:+22400266 MsG0480019573.01.T01:CDS
ACTAACCCTAGGCCAGTTAA+GGG 0.492337 4:-22400494 None:intergenic
GGTGACGGCGGTTGAAGGGT+GGG 0.492527 4:-22400195 None:intergenic
TGGCGGTGACGGCGGTTGAA+GGG 0.495800 4:-22400199 None:intergenic
TTATTATCTTCGTGTAAAAG+TGG 0.507274 4:+22400013 None:intergenic
TGTGGCAACCTAAAGGCAAA+GGG 0.513451 4:+22405875 MsG0480019573.01.T01:three_prime_UTR
CGGTTGAAGGGTGGGAGGTG+TGG 0.516128 4:-22400187 None:intergenic
TTACGGGTTGCCGGTGGTGG+CGG 0.518901 4:-22400216 None:intergenic
GTAAGAACAAACTTCAATCA+AGG 0.521498 4:-22406080 None:intergenic
ACCTCTTCTAATTGGGACAT+TGG 0.542048 4:+22405130 MsG0480019573.01.T01:three_prime_UTR
AACACTGTGTGGCAACCTAA+AGG 0.542175 4:+22405868 MsG0480019573.01.T01:three_prime_UTR
ACCGCCGTCACCGCCACCAC+CGG 0.543092 4:+22400206 MsG0480019573.01.T01:CDS
GGGAGGGTTTCAAATTCTCA+AGG 0.544486 4:+22406300 MsG0480019573.01.T01:three_prime_UTR
GTGGAGGTGCCAGCAAGCGA+AGG 0.546896 4:+22400041 MsG0480019573.01.T01:five_prime_UTR
TAAACCAAATGATATGGATA+GGG 0.546958 4:+22400267 MsG0480019573.01.T01:CDS
GTCAGATCCAGAATGAGAAT+CGG 0.548451 4:-22406001 None:intergenic
TCGTGTAAAAGTGGAGGGAG+TGG 0.554653 4:+22400022 None:intergenic
GTGTGGCAACCTAAAGGCAA+AGG 0.564536 4:+22405874 MsG0480019573.01.T01:three_prime_UTR
TACCTTAATAACTAAGCTGT+TGG 0.565789 4:-22405153 None:intergenic
AATATGATGATAGCATAGAT+GGG 0.570860 4:+22406154 MsG0480019573.01.T01:three_prime_UTR
GGGGATTTCTTTAATAGAGG+TGG 0.571169 4:+22405895 MsG0480019573.01.T01:three_prime_UTR
ACAATGACAAACACATGCAC+AGG 0.572025 4:+22400136 MsG0480019573.01.T01:CDS
GCCGGTGGTGGCGGTGACGG+CGG 0.572648 4:-22400207 None:intergenic
AAGCTAAGAAAACCGCTGAA+AGG 0.572689 4:+22400344 MsG0480019573.01.T01:CDS
TGGAGGTGCCAGCAAGCGAA+GGG 0.576975 4:+22400042 MsG0480019573.01.T01:five_prime_UTR
TATCTTCGTGTAAAAGTGGA+GGG 0.580290 4:+22400017 None:intergenic
GACGGCGGTTGAAGGGTGGG+AGG 0.588812 4:-22400192 None:intergenic
GATCTGACTCTGCAAACAGA+TGG 0.594211 4:+22406016 MsG0480019573.01.T01:three_prime_UTR
TTATCTTCGTGTAAAAGTGG+AGG 0.596434 4:+22400016 None:intergenic
GGTTCCTGATAATCGCAACA+TGG 0.598488 4:+22405090 MsG0480019573.01.T01:three_prime_UTR
GCAAAATCATATCAGTTGAG+AGG 0.608245 4:-22406353 None:intergenic
GCCAATGTCCCAATTAGAAG+AGG 0.623244 4:-22405131 None:intergenic
TGTAAAAGTGGAGGGAGTGG+AGG 0.627438 4:+22400025 MsG0480019573.01.T01:five_prime_UTR
GTAGTTCGATGTACAAGATG+TGG 0.632051 4:+22405844 MsG0480019573.01.T01:three_prime_UTR
CTGACGGTCAATCCTTTCAG+CGG 0.632986 4:-22400356 None:intergenic
GTTCCTGATAATCGCAACAT+GGG 0.660395 4:+22405091 MsG0480019573.01.T01:three_prime_UTR
ACTTCAATCAAGGAATAACC+CGG 0.669715 4:-22406070 None:intergenic
GCGTGGCAAAACGCTAACGA+TGG 0.681729 4:+22400301 MsG0480019573.01.T01:CDS
GTTTAGACACGGAATACTGA+CGG 0.693461 4:-22400372 None:intergenic
AGACTGTTACGGGTTGCCGG+TGG 0.709074 4:-22400222 None:intergenic
CAAGATGTGGCAACACTGTG+TGG 0.713546 4:+22405857 MsG0480019573.01.T01:three_prime_UTR
GTGGCAACCTAAAGGCAAAG+GGG 0.714098 4:+22405876 MsG0480019573.01.T01:three_prime_UTR
AGAAGCAAGACGTTTAGACA+CGG 0.720219 4:-22400383 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAAAAATTATAATAT+TGG - Chr4:22405428-22405447 None:intergenic 0.0%
!! GTGTATATATATATATAATT+CGG + Chr4:22403269-22403288 MsG0480019573.01.T01:intron 10.0%
!!! AAAAAAAAAAAAAAAAGCAT+AGG - Chr4:22400525-22400544 None:intergenic 10.0%
!!! ATTTCAATTTAATTTTTTGT+TGG + Chr4:22400580-22400599 MsG0480019573.01.T01:intron 10.0%
!! AAAAACCAATATAACATAAA+TGG - Chr4:22402658-22402677 None:intergenic 15.0%
!! AATTAAGTATATATACATTG+CGG - Chr4:22401623-22401642 None:intergenic 15.0%
!! ATTATCCATTTATGTTATAT+TGG + Chr4:22402650-22402669 MsG0480019573.01.T01:intron 15.0%
!! TCAAAAGAATTTATCATATT+TGG - Chr4:22404668-22404687 None:intergenic 15.0%
!!! AAATATGATAAATTCTTTTG+AGG + Chr4:22404667-22404686 MsG0480019573.01.T01:intron 15.0%
!!! AAGTACAAAAAGTTTTTTTA+TGG - Chr4:22403843-22403862 None:intergenic 15.0%
!!! AGCAAAGTATATATTTTTTA+GGG - Chr4:22401651-22401670 None:intergenic 15.0%
!!! AGTACAAAAAGTTTTTTTAT+GGG - Chr4:22403842-22403861 None:intergenic 15.0%
!!! ATAGTTTCTAATATTTCTAT+TGG + Chr4:22401253-22401272 MsG0480019573.01.T01:intron 15.0%
!!! ATGCATTTTTCATTTTATTT+CGG + Chr4:22401936-22401955 MsG0480019573.01.T01:intron 15.0%
!!! TATAGAAAAAACAATTTTGT+AGG - Chr4:22401322-22401341 None:intergenic 15.0%
!!! TTTTGAAGTATTTAATGTAA+GGG - Chr4:22403594-22403613 None:intergenic 15.0%
!!! TTTTTGAAGTATTTAATGTA+AGG - Chr4:22403595-22403614 None:intergenic 15.0%
!!! TTTTTTATTTTTTGCAGTAT+AGG + Chr4:22400603-22400622 MsG0480019573.01.T01:intron 15.0%
!! AAATAAAATTCATGGAAAAC+AGG - Chr4:22404892-22404911 None:intergenic 20.0%
!! AAGATGTATCAAAGATATAT+AGG - Chr4:22403724-22403743 None:intergenic 20.0%
!! AATAAAATTCATGGAAAACA+GGG - Chr4:22404891-22404910 None:intergenic 20.0%
!! ACTTATTATGTATATCTATC+TGG + Chr4:22402984-22403003 MsG0480019573.01.T01:intron 20.0%
!! AGATATACATAATAAGTTTC+AGG - Chr4:22402981-22403000 None:intergenic 20.0%
!! AGATATATAGGGAAATTATT+AGG - Chr4:22403712-22403731 None:intergenic 20.0%
!! AGATGTATCAAAGATATATA+GGG - Chr4:22403723-22403742 None:intergenic 20.0%
!! AGTACTAAGAAAGTTATTTA+TGG + Chr4:22405672-22405691 MsG0480019573.01.T01:intron 20.0%
!! ATATATATTCGTTTAATCTC+CGG + Chr4:22406051-22406070 MsG0480019573.01.T01:three_prime_UTR 20.0%
!! ATCAAGATATTGTTGAAATT+TGG - Chr4:22402919-22402938 None:intergenic 20.0%
!! ATTGATATTGCTAATAATTG+TGG + Chr4:22403337-22403356 MsG0480019573.01.T01:intron 20.0%
!! ATTGTTACAACAGAATAAAA+TGG - Chr4:22403541-22403560 None:intergenic 20.0%
!! CATAAAACTTACAATTCAAA+TGG - Chr4:22405724-22405743 None:intergenic 20.0%
!! CGTATGAAAAATAAAATTCA+TGG - Chr4:22404900-22404919 None:intergenic 20.0%
!! GAATAAAACTAATGAATACT+TGG - Chr4:22405514-22405533 None:intergenic 20.0%
!! GCTAATTTAACAAACAATTA+TGG + Chr4:22401095-22401114 MsG0480019573.01.T01:intron 20.0%
!! GGAAAAAAATAAGTAAAAAG+TGG - Chr4:22403795-22403814 None:intergenic 20.0%
!! TAAATTCTGTTAACATATCT+TGG + Chr4:22404498-22404517 MsG0480019573.01.T01:intron 20.0%
!! TCAAGATATTGTTGAAATTT+GGG - Chr4:22402918-22402937 None:intergenic 20.0%
!! TCACTTAAATGCTTAAAAAA+TGG + Chr4:22401999-22402018 MsG0480019573.01.T01:intron 20.0%
!! TCATATCAAACATACATATA+GGG + Chr4:22404933-22404952 MsG0480019573.01.T01:intron 20.0%
!! TTCATATCAAACATACATAT+AGG + Chr4:22404932-22404951 MsG0480019573.01.T01:intron 20.0%
!!! ATAGGGTATTATTTGATATT+TGG + Chr4:22404950-22404969 MsG0480019573.01.T01:intron 20.0%
!!! ATTATAACATTTTAGTAAGC+GGG - Chr4:22401700-22401719 None:intergenic 20.0%
!!! CAATTAATTTTATGCTAGTT+TGG + Chr4:22405558-22405577 MsG0480019573.01.T01:intron 20.0%
!!! GAGCAAAGTATATATTTTTT+AGG - Chr4:22401652-22401671 None:intergenic 20.0%
!!! GATTATAACATTTTAGTAAG+CGG - Chr4:22401701-22401720 None:intergenic 20.0%
!!! TAAGGATATTTTTGTAAATC+AGG - Chr4:22403178-22403197 None:intergenic 20.0%
!!! TATAATTATTTGTTTCTGTC+TGG - Chr4:22402090-22402109 None:intergenic 20.0%
!!! TCTTCTAAGATATATGTATT+GGG + Chr4:22403007-22403026 MsG0480019573.01.T01:intron 20.0%
!!! TTCAAAATGCATACAATTTT+GGG + Chr4:22406213-22406232 MsG0480019573.01.T01:three_prime_UTR 20.0%
!!! TTTGAAGTATTTAATGTAAG+GGG - Chr4:22403593-22403612 None:intergenic 20.0%
!!! TTTTTAGGTTTTACATTACT+GGG + Chr4:22400963-22400982 MsG0480019573.01.T01:intron 20.0%
!!! TTTTTTAGGTTTTACATTAC+TGG + Chr4:22400962-22400981 MsG0480019573.01.T01:intron 20.0%
! AAAATGAGATAAAACAAGCT+AGG - Chr4:22403461-22403480 None:intergenic 25.0%
! AAAGATGCATATGGAATTAT+AGG - Chr4:22402127-22402146 None:intergenic 25.0%
! AAAGTAACAAATTGTCTTCA+TGG + Chr4:22401354-22401373 MsG0480019573.01.T01:intron 25.0%
! AAATTCTCCCCTAAAAATAA+TGG + Chr4:22406279-22406298 MsG0480019573.01.T01:three_prime_UTR 25.0%
! AAGCATTTAAGTGAATTAAG+TGG - Chr4:22401993-22402012 None:intergenic 25.0%
! AATAAGGAAACAAGGTTAAA+TGG - Chr4:22402230-22402249 None:intergenic 25.0%
! AATATGATGATAGCATAGAT+GGG + Chr4:22406154-22406173 MsG0480019573.01.T01:three_prime_UTR 25.0%
! AATTATAATATTGGCATGCA+AGG - Chr4:22405419-22405438 None:intergenic 25.0%
! AATTCTCCCCTAAAAATAAT+GGG + Chr4:22406280-22406299 MsG0480019573.01.T01:three_prime_UTR 25.0%
! AGATACATTTGTGACATATA+AGG - Chr4:22403659-22403678 None:intergenic 25.0%
! ATAAAAAAATCTTGACATCC+TGG + Chr4:22403398-22403417 MsG0480019573.01.T01:intron 25.0%
! ATAAACCAAATGATATGGAT+AGG + Chr4:22400266-22400285 MsG0480019573.01.T01:CDS 25.0%
! ATAAGGAAACAAGGTTAAAT+GGG - Chr4:22402229-22402248 None:intergenic 25.0%
! ATATAAATACGTAGTACGTT+CGG + Chr4:22401225-22401244 MsG0480019573.01.T01:intron 25.0%
! ATATGAAATGGAATCATAAC+AGG - Chr4:22403568-22403587 None:intergenic 25.0%
! CAACAATAAACCAAATGATA+TGG + Chr4:22400261-22400280 MsG0480019573.01.T01:CDS 25.0%
! CAAGATATTGTTGAAATTTG+GGG - Chr4:22402917-22402936 None:intergenic 25.0%
! TAAACCAAATGATATGGATA+GGG + Chr4:22400267-22400286 MsG0480019573.01.T01:CDS 25.0%
! TAATATGATGATAGCATAGA+TGG + Chr4:22406153-22406172 MsG0480019573.01.T01:three_prime_UTR 25.0%
! TAATCGTGTAGACTTAAATT+TGG + Chr4:22401716-22401735 MsG0480019573.01.T01:intron 25.0%
! TAATTAGCACATACTTACAT+CGG + Chr4:22405644-22405663 MsG0480019573.01.T01:intron 25.0%
! TACTTGGTATTATTGTTTCA+AGG - Chr4:22405498-22405517 None:intergenic 25.0%
! TATATATTCGTTTAATCTCC+GGG + Chr4:22406052-22406071 MsG0480019573.01.T01:three_prime_UTR 25.0%
! TGTGAATATATAGTGAAGAA+TGG + Chr4:22400850-22400869 MsG0480019573.01.T01:intron 25.0%
! TTATATGTCACAAATGTATC+TGG + Chr4:22403658-22403677 MsG0480019573.01.T01:intron 25.0%
! TTCTGCAAAAAGAAATCAAT+TGG - Chr4:22405030-22405049 None:intergenic 25.0%
!! AAAGAAATCAATTGGTAACA+TGG - Chr4:22405022-22405041 None:intergenic 25.0%
!! AAAGCAAAAATGGATTTAAC+AGG - Chr4:22402292-22402311 None:intergenic 25.0%
!! ATTTTGTAGGAATCGATATT+AGG - Chr4:22401309-22401328 None:intergenic 25.0%
!! GAAAAAACAGAGTATTCAAA+TGG + Chr4:22401908-22401927 MsG0480019573.01.T01:intron 25.0%
!! GATGCAGATTAGTAAATTTT+TGG + Chr4:22400625-22400644 MsG0480019573.01.T01:CDS 25.0%
!! GTTCAAAATGCATACAATTT+TGG + Chr4:22406212-22406231 MsG0480019573.01.T01:three_prime_UTR 25.0%
!! TGAATTAAGTGGATTCATAA+CGG - Chr4:22401982-22402001 None:intergenic 25.0%
!! TGTTTTACCTCTATTTCAAT+CGG - Chr4:22403486-22403505 None:intergenic 25.0%
!! TTGCGATTCTTTTCTTATAA+AGG + Chr4:22404606-22404625 MsG0480019573.01.T01:intron 25.0%
!!! AAAGATTGACTCGATTTTTT+AGG - Chr4:22401745-22401764 None:intergenic 25.0%
!!! AAATCCATTTTTGCTTTAGT+TGG + Chr4:22402295-22402314 MsG0480019573.01.T01:intron 25.0%
!!! AAGATTGACTCGATTTTTTA+GGG - Chr4:22401744-22401763 None:intergenic 25.0%
!!! AGAATTTTAACTGTCGAATA+TGG + Chr4:22400741-22400760 MsG0480019573.01.T01:intron 25.0%
!!! ATTGATCGTGATTTTGAAAT+TGG + Chr4:22400439-22400458 MsG0480019573.01.T01:CDS 25.0%
!!! CTCTTTCATTTTTGTGTTTT+GGG + Chr4:22400551-22400570 MsG0480019573.01.T01:intron 25.0%
!!! CTTCTAAGATATATGTATTG+GGG + Chr4:22403008-22403027 MsG0480019573.01.T01:intron 25.0%
!!! GATTTTAATCAATTCCAATG+AGG + Chr4:22405256-22405275 MsG0480019573.01.T01:intron 25.0%
!!! GTCTTCTAAGATATATGTAT+TGG + Chr4:22403006-22403025 MsG0480019573.01.T01:intron 25.0%
!!! TAGAGTTTTGTTATAAGCTT+TGG + Chr4:22400907-22400926 MsG0480019573.01.T01:intron 25.0%
!!! TCTCTTTCATTTTTGTGTTT+TGG + Chr4:22400550-22400569 MsG0480019573.01.T01:intron 25.0%
!!! TGGTTGCATAGTTTTATTTT+TGG + Chr4:22404264-22404283 MsG0480019573.01.T01:intron 25.0%
!!! TTATAAGCTTTGGATTTGTA+AGG + Chr4:22400917-22400936 MsG0480019573.01.T01:intron 25.0%
!!! TTCTAAGATATATGTATTGG+GGG + Chr4:22403009-22403028 MsG0480019573.01.T01:intron 25.0%
!!! TTGGCTTTTACATCTTAAAA+AGG - Chr4:22404826-22404845 None:intergenic 25.0%
!!! TTTTAGGTTTTACATTACTG+GGG + Chr4:22400964-22400983 MsG0480019573.01.T01:intron 25.0%
AAAAAGGGAAACAATAAAGG+CGG + Chr4:22405335-22405354 MsG0480019573.01.T01:intron 30.0%
AAAACCCTATCCATATCATT+TGG - Chr4:22400274-22400293 None:intergenic 30.0%
AAAGGGGATTTCTTTAATAG+AGG + Chr4:22405892-22405911 MsG0480019573.01.T01:three_prime_UTR 30.0%
AACAAACAATTATGGACGTA+TGG + Chr4:22401103-22401122 MsG0480019573.01.T01:intron 30.0%
AACTACTTGATTCTTGTAAC+CGG - Chr4:22405830-22405849 None:intergenic 30.0%
AAGTCAACATCAATGATGTT+AGG - Chr4:22405949-22405968 None:intergenic 30.0%
AATTACATCAGTGAGAATGA+AGG - Chr4:22404334-22404353 None:intergenic 30.0%
AATTGAAGTTTAGTTGACGT+TGG + Chr4:22401160-22401179 MsG0480019573.01.T01:intron 30.0%
ACTATCATTATGCAATATCC+GGG - Chr4:22402183-22402202 None:intergenic 30.0%
AGATGTATCAAAGATGCATA+TGG - Chr4:22402136-22402155 None:intergenic 30.0%
AGTCAACATCAATGATGTTA+GGG - Chr4:22405948-22405967 None:intergenic 30.0%
AGTTCCAACTAAAGCAAAAA+TGG - Chr4:22402302-22402321 None:intergenic 30.0%
AGTTGGAACTTCTTTATTCT+AGG + Chr4:22402312-22402331 MsG0480019573.01.T01:intron 30.0%
ATAAGTGAAACGGAAATGAA+TGG - Chr4:22404797-22404816 None:intergenic 30.0%
ATCAATCAACACAAACACAA+TGG - Chr4:22403323-22403342 None:intergenic 30.0%
ATGTAAGGGGTAATATGAAA+TGG - Chr4:22403580-22403599 None:intergenic 30.0%
ATTGTGTAAATGCATGAAGA+TGG + Chr4:22404732-22404751 MsG0480019573.01.T01:intron 30.0%
CAACTAGTTAGAGTTCAAAT+TGG - Chr4:22404845-22404864 None:intergenic 30.0%
CAATTTGAACTCTAACTAGT+TGG + Chr4:22404843-22404862 MsG0480019573.01.T01:intron 30.0%
CACTATCATTATGCAATATC+CGG - Chr4:22402184-22402203 None:intergenic 30.0%
CATTTCCGTTTCACTTATTT+GGG + Chr4:22404799-22404818 MsG0480019573.01.T01:intron 30.0%
GATACATATTGTGACATATC+AGG - Chr4:22402068-22402087 None:intergenic 30.0%
GATGCCTAAACAAGTATATA+CGG - Chr4:22403244-22403263 None:intergenic 30.0%
GCACCTTAACAAATATATTG+TGG - Chr4:22401436-22401455 None:intergenic 30.0%
GTAAGAACAAACTTCAATCA+AGG - Chr4:22406083-22406102 None:intergenic 30.0%
GTCTAGTCAATTAAGATTGA+TGG - Chr4:22401064-22401083 None:intergenic 30.0%
TACCTTAATAACTAAGCTGT+TGG - Chr4:22405156-22405175 None:intergenic 30.0%
TCATTTCCGTTTCACTTATT+TGG + Chr4:22404798-22404817 MsG0480019573.01.T01:intron 30.0%
TGGTAAGATGTATCAAAGAT+CGG - Chr4:22402141-22402160 None:intergenic 30.0%
TTACATCAGCTTCACATAAT+TGG - Chr4:22405589-22405608 None:intergenic 30.0%
TTAGGAACGTTACAAAAGTA+AGG - Chr4:22401291-22401310 None:intergenic 30.0%
TTCCTTATTCTTTGCAATTG+TGG - Chr4:22401800-22401819 None:intergenic 30.0%
TTGAGAAGAGTTATAAAGAG+AGG + Chr4:22402849-22402868 MsG0480019573.01.T01:intron 30.0%
TTGCAGAAAATTTCTTCATC+TGG + Chr4:22405042-22405061 MsG0480019573.01.T01:intron 30.0%
TTTCTGATATCATGTCTAGA+TGG + Chr4:22402683-22402702 MsG0480019573.01.T01:intron 30.0%
! AACAAGCTAGGATTTTCAAA+AGG - Chr4:22403449-22403468 None:intergenic 30.0%
! GAATTAAGTGGATTCATAAC+GGG - Chr4:22401981-22402000 None:intergenic 30.0%
! GTTTTACCTCTATTTCAATC+GGG - Chr4:22403485-22403504 None:intergenic 30.0%
! TGGCCACAATATATTTGTTA+AGG + Chr4:22401430-22401449 MsG0480019573.01.T01:intron 30.0%
!! CTGATATGATTTTGCCATTT+TGG + Chr4:22406361-22406380 MsG0480019573.01.T01:three_prime_UTR 30.0%
!! GTATTGCTATCGATTCTTAT+AGG + Chr4:22403076-22403095 MsG0480019573.01.T01:intron 30.0%
!! TATTAAGGTATCGTTGCTAT+TGG + Chr4:22405166-22405185 MsG0480019573.01.T01:intron 30.0%
!! TGAAGAATGGATTAGTAGAA+AGG + Chr4:22400863-22400882 MsG0480019573.01.T01:intron 30.0%
!! TTTAGGTTTTACATTACTGG+GGG + Chr4:22400965-22400984 MsG0480019573.01.T01:intron 30.0%
!! TTTTAACTGTCGAATATGGA+CGG + Chr4:22400745-22400764 MsG0480019573.01.T01:intron 30.0%
!! TTTTTATGGGTTGTGAAGTA+AGG - Chr4:22403829-22403848 None:intergenic 30.0%
!!! AAACCCTCCCATTATTTTTA+GGG - Chr4:22406290-22406309 None:intergenic 30.0%
!!! TTTTTTCCTGCGTATCAATT+GGG - Chr4:22401895-22401914 None:intergenic 30.0%
AAGGACCCAAATAAGTGAAA+CGG - Chr4:22404807-22404826 None:intergenic 35.0%
AATAAGGAATCTTGACATCG+TGG + Chr4:22401811-22401830 MsG0480019573.01.T01:intron 35.0%
ACAAACACAATGGCAAAGAT+TGG - Chr4:22403313-22403332 None:intergenic 35.0%
ACATGTTATCTAAGAAGTCC+AGG - Chr4:22404575-22404594 None:intergenic 35.0%
ACTTCAATCAAGGAATAACC+CGG - Chr4:22406073-22406092 None:intergenic 35.0%
AGAAGAGAATTCACTGAAGA+AGG + Chr4:22405311-22405330 MsG0480019573.01.T01:intron 35.0%
AGCATTACAACATAGCATGA+TGG - Chr4:22401400-22401419 None:intergenic 35.0%
AGCTAGGACAAGAAAAATCA+CGG - Chr4:22402391-22402410 None:intergenic 35.0%
ATATCACTCGCACATCAAAA+CGG + Chr4:22403865-22403884 MsG0480019573.01.T01:intron 35.0%
ATTCACTGAAGAAGGGAAAA+AGG + Chr4:22405319-22405338 MsG0480019573.01.T01:intron 35.0%
CAAAATGGGATAAAACAGCT+AGG - Chr4:22401872-22401891 None:intergenic 35.0%
CATAAAGTAGAGCAAGAAAG+AGG - Chr4:22402615-22402634 None:intergenic 35.0%
CATAATGCTACATTGACACT+GGG + Chr4:22403212-22403231 MsG0480019573.01.T01:intron 35.0%
CATGCAATTACAATCCTAAC+CGG - Chr4:22404078-22404097 None:intergenic 35.0%
CGGATATTGCATAATGATAG+TGG + Chr4:22402182-22402201 MsG0480019573.01.T01:intron 35.0%
CTAACTCATCCTTACAAAAC+CGG - Chr4:22402893-22402912 None:intergenic 35.0%
CTATCATTATGCAATATCCG+GGG - Chr4:22402182-22402201 None:intergenic 35.0%
CTTCAGTGAATTCTCTTCTA+GGG - Chr4:22405310-22405329 None:intergenic 35.0%
GAAAAGTGGGATTGTGAATA+AGG - Chr4:22402246-22402265 None:intergenic 35.0%
GAAGAGAATTCACTGAAGAA+GGG + Chr4:22405312-22405331 MsG0480019573.01.T01:intron 35.0%
GAATAGAATGTATCGCAATG+CGG + Chr4:22403513-22403532 MsG0480019573.01.T01:intron 35.0%
GCAAAATCATATCAGTTGAG+AGG - Chr4:22406356-22406375 None:intergenic 35.0%
GGATTGTGAATAAGGAAACA+AGG - Chr4:22402238-22402257 None:intergenic 35.0%
GGGAAAAAGGGAAACAATAA+AGG + Chr4:22405332-22405351 MsG0480019573.01.T01:intron 35.0%
GGTTAGGATTGTAATTGCAT+GGG + Chr4:22404077-22404096 MsG0480019573.01.T01:intron 35.0%
GTATGAAGCGCATATAGTTT+CGG + Chr4:22406112-22406131 MsG0480019573.01.T01:three_prime_UTR 35.0%
GTTCTTGAATGAGACTGTTA+CGG - Chr4:22400236-22400255 None:intergenic 35.0%
TAAGAATCGATAGCAATACC+AGG - Chr4:22403075-22403094 None:intergenic 35.0%
TAAGATATATGTATTGGGGG+TGG + Chr4:22403012-22403031 MsG0480019573.01.T01:intron 35.0%
TACAATCCTAACCGGTAAAA+AGG - Chr4:22404070-22404089 None:intergenic 35.0%
TATGTGAAGCTGATGTAAGT+TGG + Chr4:22405591-22405610 MsG0480019573.01.T01:intron 35.0%
TCTTCAGTGAATTCTCTTCT+AGG - Chr4:22405311-22405330 None:intergenic 35.0%
TGTGAGTCGCTATAATTCTA+AGG + Chr4:22404707-22404726 MsG0480019573.01.T01:intron 35.0%
TTAATCCCACATCGATAGAT+AGG + Chr4:22402822-22402841 MsG0480019573.01.T01:intron 35.0%
TTACAACATAGCATGATGGT+CGG - Chr4:22401396-22401415 None:intergenic 35.0%
TTCAAGTCAAATACGATGAG+CGG + Chr4:22401774-22401793 MsG0480019573.01.T01:intron 35.0%
TTCACTGAAGAAGGGAAAAA+GGG + Chr4:22405320-22405339 MsG0480019573.01.T01:intron 35.0%
TTCAGTGAATTCTCTTCTAG+GGG - Chr4:22405309-22405328 None:intergenic 35.0%
TTCTTGAATGAGACTGTTAC+GGG - Chr4:22400235-22400254 None:intergenic 35.0%
TTGGAGCAAAGAAAATCAGA+GGG - Chr4:22404649-22404668 None:intergenic 35.0%
TTGTAATGCTACATTGACAC+TGG + Chr4:22401410-22401429 MsG0480019573.01.T01:intron 35.0%
! ATTTTGCCCGATTGAAATAG+AGG + Chr4:22403476-22403495 MsG0480019573.01.T01:intron 35.0%
! GTGGTTGTTGTTGTTGATAT+CGG - Chr4:22400171-22400190 None:intergenic 35.0%
! TATGGATTACACGAGATAGA+TGG + Chr4:22401121-22401140 MsG0480019573.01.T01:intron 35.0%
! TTAGGTTTTACATTACTGGG+GGG + Chr4:22400966-22400985 MsG0480019573.01.T01:intron 35.0%
! TTTCGGTCTGTTCTAAACAA+TGG + Chr4:22401953-22401972 MsG0480019573.01.T01:intron 35.0%
! TTTGGAGCAAAGAAAATCAG+AGG - Chr4:22404650-22404669 None:intergenic 35.0%
!! AAAGATTGGCTCAATTTTGC+TGG - Chr4:22403299-22403318 None:intergenic 35.0%
!! AAATTTTTGGATAGCCCAGT+TGG + Chr4:22400638-22400657 MsG0480019573.01.T01:CDS 35.0%
!! AAGATTGGCTCAATTTTGCT+GGG - Chr4:22403298-22403317 None:intergenic 35.0%
!! AAGCTTTGGATTTGTAAGGA+TGG + Chr4:22400921-22400940 MsG0480019573.01.T01:intron 35.0%
!! ATAACATTTTAGTAAGCGGG+AGG - Chr4:22401697-22401716 None:intergenic 35.0%
!! CATCAAAAAGCTTTGAAACG+AGG - Chr4:22405456-22405475 None:intergenic 35.0%
!! CATCATTGATGTTGACTTTG+AGG + Chr4:22405951-22405970 MsG0480019573.01.T01:three_prime_UTR 35.0%
!! CGTATTTGACTTGAACACAA+TGG - Chr4:22401769-22401788 None:intergenic 35.0%
!! GAAACCCTCCCATTATTTTT+AGG - Chr4:22406291-22406310 None:intergenic 35.0%
!! TACAATTTTGGGAGCCATAT+AGG + Chr4:22406224-22406243 MsG0480019573.01.T01:three_prime_UTR 35.0%
!! TTAGTTGACGTTGGTGTTAA+CGG + Chr4:22401169-22401188 MsG0480019573.01.T01:intron 35.0%
!! TTCTAGATCCATTTTTGCTC+TGG + Chr4:22404100-22404119 MsG0480019573.01.T01:intron 35.0%
!! TTTTGATTGTTGCGTCTGTT+TGG - Chr4:22400101-22400120 None:intergenic 35.0%
!!! AACCCTCCCATTATTTTTAG+GGG - Chr4:22406289-22406308 None:intergenic 35.0%
!!! AGGAAACAGACTGGTTTTTT+AGG + Chr4:22400948-22400967 MsG0480019573.01.T01:intron 35.0%
!!! GTTTTTTCCTGCGTATCAAT+TGG - Chr4:22401896-22401915 None:intergenic 35.0%
AACCAGAGCAACAAAACAGA+TGG - Chr4:22404249-22404268 None:intergenic 40.0%
AACTAAAGACACGTTGTCAC+CGG + Chr4:22403747-22403766 MsG0480019573.01.T01:intron 40.0%
AAGAAATCCCCTTTGCCTTT+AGG - Chr4:22405886-22405905 None:intergenic 40.0%
AAGAGTCCTATCTATCGATG+TGG - Chr4:22402831-22402850 None:intergenic 40.0%
AAGCAAAAGTTCAGCCTCAT+TGG - Chr4:22405273-22405292 None:intergenic 40.0%
AAGCTAAGAAAACCGCTGAA+AGG + Chr4:22400344-22400363 MsG0480019573.01.T01:CDS 40.0%
ACAATGACAAACACATGCAC+AGG + Chr4:22400136-22400155 MsG0480019573.01.T01:CDS 40.0%
ACCTAAGAATCCTGCCTATA+TGG - Chr4:22406241-22406260 None:intergenic 40.0%
ACCTCTTCTAATTGGGACAT+TGG + Chr4:22405130-22405149 MsG0480019573.01.T01:three_prime_UTR 40.0%
AGAAAAGAGTAGAGCTTGAG+AGG - Chr4:22404226-22404245 None:intergenic 40.0%
AGAAGCAAGACGTTTAGACA+CGG - Chr4:22400386-22400405 None:intergenic 40.0%
AGAATCCCATACTGGAAAAG+TGG - Chr4:22402260-22402279 None:intergenic 40.0%
AGAGTCCTATCTATCGATGT+GGG - Chr4:22402830-22402849 None:intergenic 40.0%
AGCTAGGTTCCAGAAAAAAC+GGG - Chr4:22401856-22401875 None:intergenic 40.0%
AGTAGAGCAAGAAAGAGGTT+AGG - Chr4:22402610-22402629 None:intergenic 40.0%
ATACATTGCGGCACCTTAAA+AGG - Chr4:22401611-22401630 None:intergenic 40.0%
ATATATGTATTGGGGGTGGT+GGG + Chr4:22403016-22403035 MsG0480019573.01.T01:intron 40.0%
ATCATCTCCGCACATCAAAA+CGG + Chr4:22404040-22404059 MsG0480019573.01.T01:intron 40.0%
ATTAGAAGAGGTCCAGCAAA+TGG - Chr4:22405122-22405141 None:intergenic 40.0%
ATTGTTGCGTCTGTTTGGTT+TGG - Chr4:22400096-22400115 None:intergenic 40.0%
CAGCTAGGTTCCAGAAAAAA+CGG - Chr4:22401857-22401876 None:intergenic 40.0%
CATAGGAAGTAACTAACCCT+AGG - Chr4:22400508-22400527 None:intergenic 40.0%
CCAGGAATGTTACAAAAGCA+AGG - Chr4:22403057-22403076 None:intergenic 40.0%
CCAGTGTCAATGTAGCATTA+TGG - Chr4:22401413-22401432 None:intergenic 40.0%
CCATAATGCTACATTGACAC+TGG + Chr4:22403211-22403230 MsG0480019573.01.T01:intron 40.0%
CCCAGTTGGAAAAAGCTTTA+CGG + Chr4:22400652-22400671 MsG0480019573.01.T01:CDS 40.0%
CCTAAACAAGTATATACGGC+AGG - Chr4:22403240-22403259 None:intergenic 40.0%
CCTGCCGTATATACTTGTTT+AGG + Chr4:22403237-22403256 MsG0480019573.01.T01:intron 40.0%
CGAGATAGATGGTTGAGATT+TGG + Chr4:22401132-22401151 MsG0480019573.01.T01:intron 40.0%
CGGTTAGGATTGTAATTGCA+TGG + Chr4:22404076-22404095 MsG0480019573.01.T01:intron 40.0%
CGTACAATACACCAAATGGT+GGG + Chr4:22401537-22401556 MsG0480019573.01.T01:intron 40.0%
GAAGTAAGGAAAGAGTCAAG+TGG - Chr4:22403989-22404008 None:intergenic 40.0%
GAATCCCATACTGGAAAAGT+GGG - Chr4:22402259-22402278 None:intergenic 40.0%
GACATGGAAACACCAATACA+GGG - Chr4:22404553-22404572 None:intergenic 40.0%
GACGTGTATACAAGGATACA+GGG - Chr4:22402955-22402974 None:intergenic 40.0%
GATTGTGCTTCTGCTGTAAT+TGG + Chr4:22405769-22405788 MsG0480019573.01.T01:intron 40.0%
GCGTATCAATTGGGCAAAAT+GGG - Chr4:22401886-22401905 None:intergenic 40.0%
GCTAGGACAAGAAAAATCAC+GGG - Chr4:22402390-22402409 None:intergenic 40.0%
GGATTTGTAAGGATGGATAG+AGG + Chr4:22400928-22400947 MsG0480019573.01.T01:intron 40.0%
GGCCAACAGCTTAGTTATTA+AGG + Chr4:22405151-22405170 MsG0480019573.01.T01:three_prime_UTR 40.0%
GGCCACAATTGCAAAGAATA+AGG + Chr4:22401795-22401814 MsG0480019573.01.T01:intron 40.0%
GGGGATTTCTTTAATAGAGG+TGG + Chr4:22405895-22405914 MsG0480019573.01.T01:three_prime_UTR 40.0%
GTAGAGCAAGAAAGAGGTTA+GGG - Chr4:22402609-22402628 None:intergenic 40.0%
GTAGTTCGATGTACAAGATG+TGG + Chr4:22405844-22405863 MsG0480019573.01.T01:three_prime_UTR 40.0%
GTCACATGACAACAACATTG+CGG - Chr4:22401458-22401477 None:intergenic 40.0%
GTCAGATCCAGAATGAGAAT+CGG - Chr4:22406004-22406023 None:intergenic 40.0%
GTGACAACTGTGTCTTTAGT+TGG - Chr4:22403920-22403939 None:intergenic 40.0%
GTGCAATTAGAATCCCATAC+TGG - Chr4:22402268-22402287 None:intergenic 40.0%
GTTCCTGATAATCGCAACAT+GGG + Chr4:22405091-22405110 MsG0480019573.01.T01:three_prime_UTR 40.0%
GTTGTTGTCATGTGACTGAA+AGG + Chr4:22401462-22401481 MsG0480019573.01.T01:intron 40.0%
GTTTAGACACGGAATACTGA+CGG - Chr4:22400375-22400394 None:intergenic 40.0%
TACATTGCGGCACCTTAAAA+GGG - Chr4:22401610-22401629 None:intergenic 40.0%
TATCTAAGAAGTCCAGGACA+TGG - Chr4:22404569-22404588 None:intergenic 40.0%
TCAGGTATGACGTGTATACA+AGG - Chr4:22402963-22402982 None:intergenic 40.0%
TCCTGGCCATAATAGATTCA+TGG + Chr4:22403415-22403434 MsG0480019573.01.T01:intron 40.0%
TCGCAGCCATGAATCTATTA+TGG - Chr4:22403424-22403443 None:intergenic 40.0%
TGACGTGTATACAAGGATAC+AGG - Chr4:22402956-22402975 None:intergenic 40.0%
TGAGAAAGAGATGCGTGATA+GGG - Chr4:22404437-22404456 None:intergenic 40.0%
TGCGTATCAATTGGGCAAAA+TGG - Chr4:22401887-22401906 None:intergenic 40.0%
TGGAAATTCCGCCTTTATTG+CGG + Chr4:22402713-22402732 MsG0480019573.01.T01:intron 40.0%
TTCTTAGAGATGCCCTGTAT+TGG + Chr4:22404538-22404557 MsG0480019573.01.T01:intron 40.0%
TTCTTAGTTGCTTCCGTTTG+TGG + Chr4:22404137-22404156 MsG0480019573.01.T01:intron 40.0%
TTGAGAAAGAGATGCGTGAT+AGG - Chr4:22404438-22404457 None:intergenic 40.0%
TTGCTGGACCTCTTCTAATT+GGG + Chr4:22405123-22405142 MsG0480019573.01.T01:three_prime_UTR 40.0%
TTTGATGTGCGGAGATGATA+TGG - Chr4:22404039-22404058 None:intergenic 40.0%
TTTGCTGGACCTCTTCTAAT+TGG + Chr4:22405122-22405141 MsG0480019573.01.T01:three_prime_UTR 40.0%
! AAAACGGAGCTCCTTTTTAC+CGG + Chr4:22404056-22404075 MsG0480019573.01.T01:intron 40.0%
! ATTTTGCCCAATTGATACGC+AGG + Chr4:22401886-22401905 MsG0480019573.01.T01:intron 40.0%
! CTCCCCTAAAAATAATGGGA+GGG + Chr4:22406284-22406303 MsG0480019573.01.T01:three_prime_UTR 40.0%
! TCTCCCCTAAAAATAATGGG+AGG + Chr4:22406283-22406302 MsG0480019573.01.T01:three_prime_UTR 40.0%
! TTCATCTGGTTTGCATTCTC+TGG + Chr4:22405056-22405075 MsG0480019573.01.T01:three_prime_UTR 40.0%
! TTGTTGCGTCTGTTTGGTTT+GGG - Chr4:22400095-22400114 None:intergenic 40.0%
!! ACAATCCCACTTTTCCAGTA+TGG + Chr4:22402251-22402270 MsG0480019573.01.T01:intron 40.0%
!! ACCGTAAAGCTTTTTCCAAC+TGG - Chr4:22400656-22400675 None:intergenic 40.0%
!! AGATCCATTTTTGCTCTGGT+TGG + Chr4:22404104-22404123 MsG0480019573.01.T01:intron 40.0%
!! AGATTGGCTCAATTTTGCTG+GGG - Chr4:22403297-22403316 None:intergenic 40.0%
!! CAAGTTACCGATTCTCATTC+TGG + Chr4:22405994-22406013 MsG0480019573.01.T01:three_prime_UTR 40.0%
!! CAATCCCACTTTTCCAGTAT+GGG + Chr4:22402252-22402271 MsG0480019573.01.T01:intron 40.0%
!! CCGTAAAGCTTTTTCCAACT+GGG - Chr4:22400655-22400674 None:intergenic 40.0%
!! CCTTGCTTTTGTAACATTCC+TGG + Chr4:22403054-22403073 MsG0480019573.01.T01:intron 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG + Chr4:22402891-22402910 MsG0480019573.01.T01:intron 40.0%
!! GTTTTGATGTGCGAGTGATA+TGG - Chr4:22403866-22403885 None:intergenic 40.0%
!!! ATAGGGTTTTGAAAGAAGCG+TGG + Chr4:22400284-22400303 MsG0480019573.01.T01:CDS 40.0%
AACACTGTGTGGCAACCTAA+AGG + Chr4:22405868-22405887 MsG0480019573.01.T01:three_prime_UTR 45.0%
AACAGCCTCCTGTGTAAAAC+AGG + Chr4:22401505-22401524 MsG0480019573.01.T01:intron 45.0%
AACTAACCCTAGGCCAGTTA+AGG - Chr4:22400498-22400517 None:intergenic 45.0%
AAGTCGCAAGTTATGCGACT+AGG - Chr4:22402745-22402764 None:intergenic 45.0%
AATTGCAAGACGCAGTTTGC+CGG + Chr4:22405808-22405827 MsG0480019573.01.T01:three_prime_UTR 45.0%
ACAGCCTCCTGTGTAAAACA+GGG + Chr4:22401506-22401525 MsG0480019573.01.T01:intron 45.0%
ACATGGGTACTTCCATTTGC+TGG + Chr4:22405107-22405126 MsG0480019573.01.T01:three_prime_UTR 45.0%
ACCAAAGAGTAGAGCAAAGC+AGG - Chr4:22402414-22402433 None:intergenic 45.0%
ACTAACCCTAGGCCAGTTAA+GGG - Chr4:22400497-22400516 None:intergenic 45.0%
AGAGCCAACCAGAGCAAAAA+TGG - Chr4:22404111-22404130 None:intergenic 45.0%
AGGCCAGTTAAGGGCAAAAT+CGG - Chr4:22400488-22400507 None:intergenic 45.0%
AGTCGCAAGTTATGCGACTA+GGG - Chr4:22402744-22402763 None:intergenic 45.0%
ATAGGGCAAGAAAGGAGCTT+GGG - Chr4:22404420-22404439 None:intergenic 45.0%
ATGAACCAGAACAATGACGC+AGG - Chr4:22402355-22402374 None:intergenic 45.0%
CATGTCTAGATGGTGTCTGT+TGG + Chr4:22402693-22402712 MsG0480019573.01.T01:intron 45.0%
CTAAAGACACAGTTGTCACC+TGG + Chr4:22403921-22403940 MsG0480019573.01.T01:intron 45.0%
CTCCTGTGTAAAACAGGGTA+AGG + Chr4:22401511-22401530 MsG0480019573.01.T01:intron 45.0%
GAAGTCGAATACGACTGATG+CGG + Chr4:22403361-22403380 MsG0480019573.01.T01:intron 45.0%
GAGCAAAGAAAATCAGAGGG+AGG - Chr4:22404646-22404665 None:intergenic 45.0%
GATATATGTATTGGGGGTGG+TGG + Chr4:22403015-22403034 MsG0480019573.01.T01:intron 45.0%
GATCTGACTCTGCAAACAGA+TGG + Chr4:22406016-22406035 MsG0480019573.01.T01:three_prime_UTR 45.0%
GATGGATAGAGGAAACAGAC+TGG + Chr4:22400939-22400958 MsG0480019573.01.T01:intron 45.0%
GCAAACTGCGTCTTGCAATT+CGG - Chr4:22405808-22405827 None:intergenic 45.0%
GCCAATGTCCCAATTAGAAG+AGG - Chr4:22405134-22405153 None:intergenic 45.0%
GCCATATAGGCAGGATTCTT+AGG + Chr4:22406237-22406256 MsG0480019573.01.T01:three_prime_UTR 45.0%
GCCATGAATCTATTATGGCC+AGG - Chr4:22403419-22403438 None:intergenic 45.0%
GCGTACAATACACCAAATGG+TGG + Chr4:22401536-22401555 MsG0480019573.01.T01:intron 45.0%
GCTGCGTACAATACACCAAA+TGG + Chr4:22401533-22401552 MsG0480019573.01.T01:intron 45.0%
GCTTCTGCTGTAATTGGACA+GGG + Chr4:22405775-22405794 MsG0480019573.01.T01:intron 45.0%
GGAAAACAGGGACTAAGTGT+TGG - Chr4:22404879-22404898 None:intergenic 45.0%
GGACATGGAAACACCAATAC+AGG - Chr4:22404554-22404573 None:intergenic 45.0%
GGGAGGGTTTCAAATTCTCA+AGG + Chr4:22406300-22406319 MsG0480019573.01.T01:three_prime_UTR 45.0%
GGTGACAACGTGTCTTTAGT+TGG - Chr4:22403748-22403767 None:intergenic 45.0%
GGTTCCTGATAATCGCAACA+TGG + Chr4:22405090-22405109 MsG0480019573.01.T01:three_prime_UTR 45.0%
GTACCCATGTTGCGATTATC+AGG - Chr4:22405097-22405116 None:intergenic 45.0%
GTCATGTGACTGAAAGGTCA+CGG + Chr4:22401468-22401487 MsG0480019573.01.T01:intron 45.0%
GTGAACCAGAACAATGAAGC+AGG - Chr4:22404167-22404186 None:intergenic 45.0%
TCATGTGACTGAAAGGTCAC+GGG + Chr4:22401469-22401488 MsG0480019573.01.T01:intron 45.0%
TCCTGCTTTGCTCTACTCTT+TGG + Chr4:22402410-22402429 MsG0480019573.01.T01:intron 45.0%
TCTCAAAGCCAGCACAATGA+AGG - Chr4:22402795-22402814 None:intergenic 45.0%
TGAAGTAAGGAAGAGGCAAG+TGG - Chr4:22403816-22403835 None:intergenic 45.0%
TGCTTCTGCTGTAATTGGAC+AGG + Chr4:22405774-22405793 MsG0480019573.01.T01:intron 45.0%
TGGGTTGTGAAGTAAGGAAG+AGG - Chr4:22403823-22403842 None:intergenic 45.0%
TGTCTTCATGGAATCGAACG+TGG + Chr4:22401366-22401385 MsG0480019573.01.T01:intron 45.0%
TGTCTTCGTGAAATCCAACG+CGG + Chr4:22403148-22403167 MsG0480019573.01.T01:intron 45.0%
TGTGGCAACCTAAAGGCAAA+GGG + Chr4:22405875-22405894 MsG0480019573.01.T01:three_prime_UTR 45.0%
! AGCCTTACCCTGTTTTACAC+AGG - Chr4:22401516-22401535 None:intergenic 45.0%
! AGTCGCATAACTTGCGACTT+TGG + Chr4:22402745-22402764 MsG0480019573.01.T01:intron 45.0%
! AGTTGCTCTAGGTACAGAGT+TGG + Chr4:22402444-22402463 MsG0480019573.01.T01:intron 45.0%
! CTTACCCTGTTTTACACAGG+AGG - Chr4:22401513-22401532 None:intergenic 45.0%
! CTTCCGATTTTGCCCTTAAC+TGG + Chr4:22400482-22400501 MsG0480019573.01.T01:CDS 45.0%
! GGAGCATCTCAATGATAGGT+GGG + Chr4:22400990-22401009 MsG0480019573.01.T01:intron 45.0%
! GGTTTGGGAAATGGAGTGTT+TGG - Chr4:22400080-22400099 None:intergenic 45.0%
! GTATTGGTGTTTCCATGTCC+TGG + Chr4:22404554-22404573 MsG0480019573.01.T01:intron 45.0%
! GTTGCTCTAGGTACAGAGTT+GGG + Chr4:22402445-22402464 MsG0480019573.01.T01:intron 45.0%
!! ATTTTGCCCTTAACTGGCCT+AGG + Chr4:22400488-22400507 MsG0480019573.01.T01:CDS 45.0%
!! ATTTTGGGAGCCATATAGGC+AGG + Chr4:22406228-22406247 MsG0480019573.01.T01:three_prime_UTR 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG - Chr4:22402884-22402903 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG + Chr4:22402881-22402900 MsG0480019573.01.T01:intron 45.0%
!! CGTCTGTTTGGTTTGGGAAA+TGG - Chr4:22400089-22400108 None:intergenic 45.0%
!! CTCCATCTGTTTTGTTGCTC+TGG + Chr4:22404244-22404263 MsG0480019573.01.T01:intron 45.0%
!! GGACAGTTGGTGTCTTTTGT+TGG - Chr4:22402161-22402180 None:intergenic 45.0%
!! TCATTGTGCTGGCTTTGAGA+GGG + Chr4:22402795-22402814 MsG0480019573.01.T01:intron 45.0%
!! TTCATTGTGCTGGCTTTGAG+AGG + Chr4:22402794-22402813 MsG0480019573.01.T01:intron 45.0%
!! TTTTGCCCTTAACTGGCCTA+GGG + Chr4:22400489-22400508 MsG0480019573.01.T01:CDS 45.0%
!!! ACGCTAACGATGGTTTTGAG+CGG + Chr4:22400311-22400330 MsG0480019573.01.T01:CDS 45.0%
!!! CATTCTCTGGCTGGCTTTTT+CGG + Chr4:22405069-22405088 MsG0480019573.01.T01:three_prime_UTR 45.0%
AAGGTCACGGGTTTAAGTCC+TGG + Chr4:22401481-22401500 MsG0480019573.01.T01:intron 50.0%
ACCTAGAGCAACTCTGCAGA+AGG - Chr4:22402437-22402456 None:intergenic 50.0%
AGCATTATGGAGCAGCACAG+TGG - Chr4:22403201-22403220 None:intergenic 50.0%
AGTAGAGCAAAGCAGGAGCT+AGG - Chr4:22402407-22402426 None:intergenic 50.0%
AGTAGAGCTTGAGAGGAGCT+CGG - Chr4:22404219-22404238 None:intergenic 50.0%
AGTGGTCCTACAGTGTCATG+CGG - Chr4:22403950-22403969 None:intergenic 50.0%
ATGCAATATCCGGGGACAGT+TGG - Chr4:22402174-22402193 None:intergenic 50.0%
ATGCACCTGCGTCATTGTTC+TGG + Chr4:22402347-22402366 MsG0480019573.01.T01:intron 50.0%
CAAAAGACACCAACTGTCCC+CGG + Chr4:22402162-22402181 MsG0480019573.01.T01:intron 50.0%
CAAGATGTGGCAACACTGTG+TGG + Chr4:22405857-22405876 MsG0480019573.01.T01:three_prime_UTR 50.0%
CGAATATGGACGGCGTCATT+TGG + Chr4:22400755-22400774 MsG0480019573.01.T01:intron 50.0%
CTCAATGATAGGTGGGAGTC+TGG + Chr4:22400997-22401016 MsG0480019573.01.T01:intron 50.0%
CTCCAACACCTTCATTGTGC+TGG + Chr4:22402784-22402803 MsG0480019573.01.T01:intron 50.0%
CTGACGGTCAATCCTTTCAG+CGG - Chr4:22400359-22400378 None:intergenic 50.0%
GATAGGGCAAGAAAGGAGCT+TGG - Chr4:22404421-22404440 None:intergenic 50.0%
GATGCGTGATAGGGCAAGAA+AGG - Chr4:22404428-22404447 None:intergenic 50.0%
GTCGCAAGTTATGCGACTAG+GGG - Chr4:22402743-22402762 None:intergenic 50.0%
GTGCACCTGCTTCATTGTTC+TGG + Chr4:22404159-22404178 MsG0480019573.01.T01:intron 50.0%
GTGGCAACCTAAAGGCAAAG+GGG + Chr4:22405876-22405895 MsG0480019573.01.T01:three_prime_UTR 50.0%
GTGTGGCAACCTAAAGGCAA+AGG + Chr4:22405874-22405893 MsG0480019573.01.T01:three_prime_UTR 50.0%
TAGGGCAAGAAAGGAGCTTG+GGG - Chr4:22404419-22404438 None:intergenic 50.0%
TATGGAGCAGCACAGTGGTA+AGG - Chr4:22403196-22403215 None:intergenic 50.0%
TCCTTCTGCAGAGTTGCTCT+AGG + Chr4:22402433-22402452 MsG0480019573.01.T01:intron 50.0%
TCTTTCTTCCCTTCGCTTGC+TGG - Chr4:22400053-22400072 None:intergenic 50.0%
TGAAGCAGGTGCACCACAAA+CGG - Chr4:22404153-22404172 None:intergenic 50.0%
TGTAAAAGTGGAGGGAGTGG+AGG + Chr4:22400025-22400044 MsG0480019573.01.T01:five_prime_UTR 50.0%
! AGCCAGCACAATGAAGGTGT+TGG - Chr4:22402789-22402808 None:intergenic 50.0%
! ATGAGACTGTTACGGGTTGC+CGG - Chr4:22400228-22400247 None:intergenic 50.0%
! CGGAGCATCTCAATGATAGG+TGG + Chr4:22400989-22401008 MsG0480019573.01.T01:intron 50.0%
! GGTGTTGGAGGTTGCAATGA+AGG - Chr4:22402774-22402793 None:intergenic 50.0%
! GGTTTTACATTACTGGGGGG+CGG + Chr4:22400969-22400988 MsG0480019573.01.T01:intron 50.0%
! TCTGGTTTGCATTCTCTGGC+TGG + Chr4:22405060-22405079 MsG0480019573.01.T01:three_prime_UTR 50.0%
! TTACACAGGAGGCTGTTTCC+AGG - Chr4:22401502-22401521 None:intergenic 50.0%
!! AGGAGCTCCGTTTTGATGTG+CGG - Chr4:22404050-22404069 None:intergenic 50.0%
!! ATTGTGCTGGCTTTGAGAGG+GGG + Chr4:22402797-22402816 MsG0480019573.01.T01:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG - Chr4:22402879-22402898 None:intergenic 50.0%
!! CAGCACAATGAAGGTGTTGG+AGG - Chr4:22402786-22402805 None:intergenic 50.0%
!! CATTGTGCTGGCTTTGAGAG+GGG + Chr4:22402796-22402815 MsG0480019573.01.T01:intron 50.0%
!! GGAGCTCCTTTTTACCGGTT+AGG + Chr4:22404061-22404080 MsG0480019573.01.T01:intron 50.0%
ACTAGAGCTCCCGCATATGC+AGG - Chr4:22401577-22401596 None:intergenic 55.0%
CTAGAGCTCCCGCATATGCA+GGG - Chr4:22401576-22401595 None:intergenic 55.0%
CTAGGGGTGGACCGCAATAA+AGG - Chr4:22402727-22402746 None:intergenic 55.0%
GACGCAGGTGCATCAAACAC+AGG - Chr4:22402340-22402359 None:intergenic 55.0%
GCAAGTTATGCGACTAGGGG+TGG - Chr4:22402740-22402759 None:intergenic 55.0%
GCACACCTCACCTTACAAGC+CGG + Chr4:22402871-22402890 MsG0480019573.01.T01:intron 55.0%
GCGTGGCAAAACGCTAACGA+TGG + Chr4:22400301-22400320 MsG0480019573.01.T01:CDS 55.0%
GTAAATCAGGCGAACCGCGT+TGG - Chr4:22403165-22403184 None:intergenic 55.0%
GTAGAGCTTGAGAGGAGCTC+GGG - Chr4:22404218-22404237 None:intergenic 55.0%
GTGGTCCTACCAGTGTCATG+CGG - Chr4:22403776-22403795 None:intergenic 55.0%
TACAGTGTCATGCGGCAACC+AGG - Chr4:22403942-22403961 None:intergenic 55.0%
TACCAGTGTCATGCGGCAAC+CGG - Chr4:22403769-22403788 None:intergenic 55.0%
TGACATCGTGGCCATAGACG+TGG + Chr4:22401823-22401842 MsG0480019573.01.T01:intron 55.0%
TGGTTGCCGCATGACACTGT+AGG + Chr4:22403941-22403960 MsG0480019573.01.T01:intron 55.0%
! GGGCGGAGCATCTCAATGAT+AGG + Chr4:22400986-22401005 MsG0480019573.01.T01:intron 55.0%
!!! GGCTGCAGACCCGTTTTTTC+TGG + Chr4:22401844-22401863 MsG0480019573.01.T01:intron 55.0%
CATATGCAGGGTCCGGGAAG+GGG - Chr4:22401564-22401583 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG + Chr4:22401564-22401583 MsG0480019573.01.T01:intron 60.0%
GCATATGCAGGGTCCGGGAA+GGG - Chr4:22401565-22401584 None:intergenic 60.0%
GGGGTGGACCGCAATAAAGG+CGG - Chr4:22402724-22402743 None:intergenic 60.0%
GGTTGCCGCATGACACTGGT+AGG + Chr4:22403768-22403787 MsG0480019573.01.T01:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG + Chr4:22401565-22401584 MsG0480019573.01.T01:intron 60.0%
! AGACTGTTACGGGTTGCCGG+TGG - Chr4:22400225-22400244 None:intergenic 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG + Chr4:22401581-22401600 MsG0480019573.01.T01:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + Chr4:22401549-22401568 MsG0480019573.01.T01:intron 60.0%
! GTGCACCGGGTGCCCTTTTA+AGG + Chr4:22401595-22401614 MsG0480019573.01.T01:intron 60.0%
!! CGGCACCTTAAAAGGGCACC+CGG - Chr4:22401603-22401622 None:intergenic 60.0%
!! TGGAGGTGCCAGCAAGCGAA+GGG + Chr4:22400042-22400061 MsG0480019573.01.T01:five_prime_UTR 60.0%
CGCATATGCAGGGTCCGGGA+AGG - Chr4:22401566-22401585 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG - Chr4:22401551-22401570 None:intergenic 65.0%
CGGGTCTGCAGCCACGTCTA+TGG - Chr4:22401837-22401856 None:intergenic 65.0%
CGGTTGAAGGGTGGGAGGTG+TGG - Chr4:22400190-22400209 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG - Chr4:22401570-22401589 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG - Chr4:22401571-22401590 None:intergenic 65.0%
! CACCGGTTGCCGCATGACAC+TGG + Chr4:22403764-22403783 MsG0480019573.01.T01:intron 65.0%
! CTGTTACGGGTTGCCGGTGG+TGG - Chr4:22400222-22400241 None:intergenic 65.0%
! GGTGACGGCGGTTGAAGGGT+GGG - Chr4:22400198-22400217 None:intergenic 65.0%
! TGCGGGAGCTCTAGTGCACC+GGG + Chr4:22401582-22401601 MsG0480019573.01.T01:intron 65.0%
! TGGCGGTGACGGCGGTTGAA+GGG - Chr4:22400202-22400221 None:intergenic 65.0%
! TTACGGGTTGCCGGTGGTGG+CGG - Chr4:22400219-22400238 None:intergenic 65.0%
!! GTGGAGGTGCCAGCAAGCGA+AGG + Chr4:22400041-22400060 MsG0480019573.01.T01:five_prime_UTR 65.0%
GACGGCGGTTGAAGGGTGGG+AGG - Chr4:22400195-22400214 None:intergenic 70.0%
! CGGTGACGGCGGTTGAAGGG+TGG - Chr4:22400199-22400218 None:intergenic 70.0%
! GTGGCGGTGACGGCGGTTGA+AGG - Chr4:22400203-22400222 None:intergenic 70.0%
!! GTTGCCGGTGGTGGCGGTGA+CGG - Chr4:22400213-22400232 None:intergenic 70.0%
!! TGGGGGTGGTGGGTGTGCAG+TGG + Chr4:22403026-22403045 MsG0480019573.01.T01:intron 70.0%
ACCGCCGTCACCGCCACCAC+CGG + Chr4:22400206-22400225 MsG0480019573.01.T01:CDS 75.0%
!!! GCCGGTGGTGGCGGTGACGG+CGG - Chr4:22400210-22400229 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr4 gene 22400025 22406392 22400025 ID=MsG0480019573.01;Name=MsG0480019573.01
Chr4 mRNA 22400025 22406392 22400025 ID=MsG0480019573.01.T01;Parent=MsG0480019573.01;Name=MsG0480019573.01.T01;_AED=0.24;_eAED=0.24;_QI=105|0.66|0.75|1|0.33|0.5|4|720|158
Chr4 exon 22400025 22400510 22400025 ID=MsG0480019573.01.T01:exon:8430;Parent=MsG0480019573.01.T01
Chr4 exon 22400620 22400713 22400620 ID=MsG0480019573.01.T01:exon:8431;Parent=MsG0480019573.01.T01
Chr4 exon 22405048 22405172 22405048 ID=MsG0480019573.01.T01:exon:8432;Parent=MsG0480019573.01.T01
Chr4 exon 22405796 22406392 22405796 ID=MsG0480019573.01.T01:exon:8433;Parent=MsG0480019573.01.T01
Chr4 five_prime_UTR 22400025 22400129 22400025 ID=MsG0480019573.01.T01:five_prime_utr;Parent=MsG0480019573.01.T01
Chr4 CDS 22400130 22400510 22400130 ID=MsG0480019573.01.T01:cds;Parent=MsG0480019573.01.T01
Chr4 CDS 22400620 22400713 22400620 ID=MsG0480019573.01.T01:cds;Parent=MsG0480019573.01.T01
Chr4 CDS 22405048 22405049 22405048 ID=MsG0480019573.01.T01:cds;Parent=MsG0480019573.01.T01
Chr4 three_prime_UTR 22405050 22405172 22405050 ID=MsG0480019573.01.T01:three_prime_utr;Parent=MsG0480019573.01.T01
Chr4 three_prime_UTR 22405796 22406392 22405796 ID=MsG0480019573.01.T01:three_prime_utr;Parent=MsG0480019573.01.T01
Gene Sequence

>MsG0480019573.01.T01

ATGTTCACAATGACAAACACATGCACAGGAACATCACTCCGATATCAACAACAACAACCACACCTCCCACCCTTCAACCGCCGTCACCGCCACCACCGGCAACCCGTAACAGTCTCATTCAAGAACAACAACAACAATAAACCAAATGATATGGATAGGGTTTTGAAAGAAGCGTGGCAAAACGCTAACGATGGTTTTGAGCGGTTATTATTTGAAGCTAAGAAAACCGCTGAAAGGATTGACCGTCAGTATTCCGTGTCTAAACGTCTTGCTTCTGTTGCTTCTGCTGCTGCTGATAGAGCTCGTGAAATTGATCGTGATTTTGAAATTGGTGTTAAATATCGTAACTTTTCTTCCGATTTTGCCCTTAACTGGCCTAGGTATAGGATGCAGATTAGTAAATTTTTGGATAGCCCAGTTGGAAAAAGCTTTACGGTTAGTATTGATAATTTCTTATTCTTCTTTTTACACTTTTAA

Protein sequence

>MsG0480019573.01.T01

MFTMTNTCTGTSLRYQQQQPHLPPFNRRHRHHRQPVTVSFKNNNNNKPNDMDRVLKEAWQNANDGFERLLFEAKKTAERIDRQYSVSKRLASVASAAADRAREIDRDFEIGVKYRNFSSDFALNWPRYRMQISKFLDSPVGKSFTVSIDNFLFFFLHF*