AlfalfaGEDB | MsG0380012782.01

M. sativa cultivar ZhongmuNo.1 / MsG0380012782.01

KEGG: -
GO: GO:0003723
PFAM: PF06485

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012782.01.T01	XP_003599263.1	89.024	410	12	3	1	407	1	380	0	716

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012782.01.T01	Q9SFB3	61.594	414	112	5	1	407	1	374	1.35E-174	494

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012782.01.T01	G7IWV1	89.024	410	12	3	1	407	1	380	0.0	716

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048059.01	MsG0380012782.01	0.814214	1.726859e-51	1.151635e-48
MsG0080048085.01	MsG0380012782.01	0.813779	2.153476e-51	1.419340e-48
MsG0080048198.01	MsG0380012782.01	0.803644	3.158715e-49	1.595754e-46
MsG0080048273.01	MsG0380012782.01	0.834107	3.628896e-56	4.263861e-53
MsG0080048274.01	MsG0380012782.01	0.839057	1.990009e-57	2.716079e-54
MsG0080048528.01	MsG0380012782.01	0.900792	5.137928e-78	6.744231e-74
MsG0080048780.01	MsG0380012782.01	0.800150	1.649171e-48	7.623023e-46
MsG0080048820.01	MsG0380012782.01	0.820906	5.353311e-53	4.291402e-50
MsG0080048845.01	MsG0380012782.01	0.836821	7.474453e-57	9.528427e-54
MsG0080048887.01	MsG0380012782.01	0.895922	6.044620e-76	6.394602e-72

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012782.01.T01	MTR_3g030950	89.024	410	12	3	1	407	1	380	0.0	716
MsG0380012782.01.T01	MTR_3g030975	99.048	210	2	0	198	407	3	212	8.32e-150	423
MsG0380012782.01.T01	MTR_8g104810	90.625	64	6	0	99	162	43	106	4.98e-36	128

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012782.01.T01	AT3G08010	61.594	414	112	5	1	407	1	374	1.38e-175	494

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Find 111 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCCTGGATTTCAAAA+GGG	0.557929	3:+24469181	MsG0380012782.01.T01:CDS
AAAGATTTGGATATGGTTCT+GGG	0.430953	3:+24469621	MsG0380012782.01.T01:CDS
AAATCTTTCCTCTGAGGCTG+AGG	0.496486	3:-24469606	None:intergenic
AAATTCCAACTGAAAGAGTC+AGG	0.502775	3:-24470575	None:intergenic
AACAGCCAATCCTGGGATCA+AGG	0.490579	3:-24469684	None:intergenic
AACTAAAGAAGCTGAAGCTT+GGG	0.435084	3:+24470641	MsG0380012782.01.T01:CDS
AAGAGCTCTTCCCAGTAAAC+GGG	0.480174	3:+24467744	MsG0380012782.01.T01:CDS
AAGATGCAACAGCCAATCCT+GGG	0.585967	3:-24469691	None:intergenic
AAGCGAATGTTTCTAGGCAC+AGG	0.539819	3:-24466144	None:intergenic
AATAATTTGTACAATTATAC+AGG	0.388555	3:-24470771	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATCCTGGATTTCAAAA+GGG	+	Chr3:24469181-24469200	MsG0380012782.01.T01:CDS	30.0%
AAATTTGTGAACAACGGAAA+GGG	+	Chr3:24468276-24468295	MsG0380012782.01.T01:intron	30.0%
AATGAAAAAAGAAACAAGGG+GGG	-	Chr3:24468648-24468667	None:intergenic	30.0%
ATAAAAGCTGTGACAGTAAA+TGG	-	Chr3:24470507-24470526	None:intergenic	30.0%
ATGTTAGAGGAAAGAAACTT+TGG	+	Chr3:24466001-24466020	MsG0380012782.01.T01:CDS	30.0%
CAAGTAGTTACTTATTCTGT+TGG	+	Chr3:24466869-24466888	MsG0380012782.01.T01:intron	30.0%
CAGAATAAGTAACTACTTGT+AGG	-	Chr3:24466868-24466887	None:intergenic	30.0%
CATGTAAGTCATGTTATGTT+TGG	-	Chr3:24467622-24467641	None:intergenic	30.0%
CCTAAATGCAGAGAAAATAA+AGG	-	Chr3:24467408-24467427	None:intergenic	30.0%
CTAATAATAAGCTAACACAC+TGG	+	Chr3:24468436-24468455	MsG0380012782.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	24465634	24470975	24465634	ID=MsG0380012782.01;Name=MsG0380012782.01
Chr3	mRNA	24465634	24470975	24465634	ID=MsG0380012782.01.T01;Parent=MsG0380012782.01;Name=MsG0380012782.01.T01;_AED=0.50;_eAED=0.53;_QI=51\|0.5\|0.71\|1\|1\|1\|7\|196\|407
Chr3	exon	24465634	24466172	24465634	ID=MsG0380012782.01.T01:exon:4737;Parent=MsG0380012782.01.T01
Chr3	exon	24466500	24466543	24466500	ID=MsG0380012782.01.T01:exon:4738;Parent=MsG0380012782.01.T01
Chr3	exon	24467509	24467555	24467509	ID=MsG0380012782.01.T01:exon:4739;Parent=MsG0380012782.01.T01
Chr3	exon	24467697	24467765	24467697	ID=MsG0380012782.01.T01:exon:4740;Parent=MsG0380012782.01.T01
Chr3	exon	24469130	24469301	24469130	ID=MsG0380012782.01.T01:exon:4741;Parent=MsG0380012782.01.T01
Chr3	exon	24469591	24469734	24469591	ID=MsG0380012782.01.T01:exon:4742;Parent=MsG0380012782.01.T01
Chr3	exon	24470520	24470975	24470520	ID=MsG0380012782.01.T01:exon:4743;Parent=MsG0380012782.01.T01
Chr3	five_prime_UTR	24465634	24465684	24465634	ID=MsG0380012782.01.T01:five_prime_utr;Parent=MsG0380012782.01.T01
Chr3	CDS	24465685	24466172	24465685	ID=MsG0380012782.01.T01:cds;Parent=MsG0380012782.01.T01
Chr3	CDS	24466500	24466543	24466500	ID=MsG0380012782.01.T01:cds;Parent=MsG0380012782.01.T01
Chr3	CDS	24467509	24467555	24467509	ID=MsG0380012782.01.T01:cds;Parent=MsG0380012782.01.T01
Chr3	CDS	24467697	24467765	24467697	ID=MsG0380012782.01.T01:cds;Parent=MsG0380012782.01.T01
Chr3	CDS	24469130	24469301	24469130	ID=MsG0380012782.01.T01:cds;Parent=MsG0380012782.01.T01
Chr3	CDS	24469591	24469734	24469591	ID=MsG0380012782.01.T01:cds;Parent=MsG0380012782.01.T01
Chr3	CDS	24470520	24470779	24470520	ID=MsG0380012782.01.T01:cds;Parent=MsG0380012782.01.T01
Chr3	three_prime_UTR	24470780	24470975	24470780	ID=MsG0380012782.01.T01:three_prime_utr;Parent=MsG0380012782.01.T01

Gene Sequence

>MsG0380012782.01.T01

ATGGCTACTCTAAGCTTCAACTCCACAAGAATCAAAACCCCATCTTTCAACTACACCAACCCCATCATCACCACCAAACTCTCCTCTTCAAAACCCATCATCAATTTCCCATTTTCCTCCAACAAAAACCACTTCCTTAAACTCCAAACATGTTCTGTTTCAGAAACATCAGCAACAACAACACAGAAAGACATTGAAGAAGAAGAAGAAGAAGAGAAAGAAGACCCAACTGCTGAAACATGTTATCTTGACCCAGAAGCTGATCCTGACAGTATATTAAGCTGGGAGTTGGATTTTTGTTCTAGACCAATTCTTGATGTTAGAGGAAAGAAACTTTGGGAGCTTGTTGTTTGTGATAAATCTCTTTCACTTCAATATACTAAGTATTTTCCTAATAATGTTATTAATAGTATCACTCTCAAGGATTCTATTGTTGCTATTTGTGATGAATTGGATTTACCTGTGCCTAGAAACATTCGCTTCTTTAGTTTAAAAGGGCAACCCGGTGCACTAAAGCTCCCGCATATGCAGGGCATGTTCATGTGTGGTGTCTTTAAGACATGTTGGGATTTCACATGGGTCACAGATGCAAACATTATTACAAAAGCATGTAAGGAGCTGGGCATAAGAGCTCTTCCCAGTAAACGGTGCTTGTCATTACTTTTATGGTTAGAGGAACGCTATGAGACTGTATACACGAAACATCCTGGATTTCAAAAGGGATCCAAGCCTCTTTTGCCATTAGACAATCCTTTTGCGACAAAACTTCCAGAAGATCTTTTTGGTGAAAGATGGGCTTTTGTTCAGTTACCTTACTCAGCCGTTCGAGAGGAGGCCTCAGCCTCAGAGGAAAGATTTGGATATGGTTCTGGGCTAGATCTTGATTTATTGGGTATTGAAATCGACGAGAAGACCTTGATCCCAGGATTGGCTGTTGCATCTTCTCGTGCTAAAATATTATCAGCTTTTATGAATGGATTGGAGCTCTGTTCCATTGAAACGGACACTGCACGCTCTAACCTGACTCTTTCAGTTGGAATTTCGACTCGGTATGTATATGCGACCTATAAGAAAAGTCCTACCTCAACTAAAGAAGCTGAAGCTTGGGAAGCAGCTAAGAAAGCTTCTGGAGGTTTGCATTTCCTAGCAATCCAAGATGAGTTAGATTCTGAGGATTGTATTGGCTTCTGGCTTTTGCTAGACTTGCCACCTCCACCTGTATAA

Protein sequence

>MsG0380012782.01.T01

MATLSFNSTRIKTPSFNYTNPIITTKLSSSKPIINFPFSSNKNHFLKLQTCSVSETSATTTQKDIEEEEEEEKEDPTAETCYLDPEADPDSILSWELDFCSRPILDVRGKKLWELVVCDKSLSLQYTKYFPNNVINSITLKDSIVAICDELDLPVPRNIRFFSLKGQPGALKLPHMQGMFMCGVFKTCWDFTWVTDANIITKACKELGIRALPSKRCLSLLLWLEERYETVYTKHPGFQKGSKPLLPLDNPFATKLPEDLFGERWAFVQLPYSAVREEASASEERFGYGSGLDLDLLGIEIDEKTLIPGLAVASSRAKILSAFMNGLELCSIETDTARSNLTLSVGISTRYVYATYKKSPTSTKEAEAWEAAKKASGGLHFLAIQDELDSEDCIGFWLLLDLPPPPV*