AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005561.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005561.01.T01 MTR_1g102880 88.401 319 35 1 1 319 65 381 0.0 580
MsG0180005561.01.T01 MTR_1g102880 88.814 295 31 1 25 319 1 293 0.0 544
MsG0180005561.01.T01 MTR_1g102880 88.189 254 30 0 1 254 65 318 3.66e-167 469
MsG0180005561.01.T01 MTR_1g102880 88.696 230 26 0 25 254 1 230 1.06e-153 431
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005561.01.T01 AT4G38225 55.477 283 124 1 37 319 70 350 6.21e-115 337
MsG0180005561.01.T01 AT4G38225 55.477 283 124 1 37 319 70 350 6.77e-115 337
MsG0180005561.01.T01 AT4G38225 60.094 213 85 0 37 249 70 282 1.44e-93 280

Find 14 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATCAAATCCCTTCTTTA+TGG 0.065768 1:-93329229 MsG0180005561.01.T01:exon
CTCCTCCAATTGAAAGAAAA+TGG 0.315285 1:+93329068 None:intergenic
AGAGTTCACTGATGCCAAAA+AGG 0.388557 1:-93329124 MsG0180005561.01.T01:exon
AAGCAGACATGAAGCTGAAA+AGG 0.398810 1:+93329186 None:intergenic
AAATTACATTTCCATAAAGA+AGG 0.452632 1:+93329218 None:intergenic
TTTCTTTCAATTGGAGGAGG+AGG 0.483111 1:-93329064 MsG0180005561.01.T01:intron
AGCAGACATGAAGCTGAAAA+GGG 0.509419 1:+93329187 None:intergenic
AATTACATTTCCATAAAGAA+GGG 0.532465 1:+93329219 None:intergenic
ATGTGAAGAGGATGAAAGGG+TGG 0.545719 1:+93329296 None:intergenic
GTAGATGTGAAGAGGATGAA+AGG 0.609385 1:+93329292 None:intergenic
TAGATGTGAAGAGGATGAAA+GGG 0.631323 1:+93329293 None:intergenic
GAAAGGGTGGAGAAAGAACG+TGG 0.655188 1:+93329309 None:intergenic
TACATGTGGTAGATGTGAAG+AGG 0.679456 1:+93329284 None:intergenic
TGAAAGGAAGTACATACATG+TGG 0.686052 1:+93329270 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAATAAAATATAAACAAT+AGG - Chr1:93329212-93329231 MsG0180005561.01.T01:exon 10.0%
!!! AAAGTATAGTTTTTTTTTTT+TGG + Chr1:93327387-93327406 None:intergenic 10.0%
!!! TTGATTTTAAGTATTAAATT+TGG - Chr1:93327885-93327904 MsG0180005561.01.T01:CDS 10.0%
!! AATACATATATGAAAAACAA+AGG + Chr1:93328834-93328853 None:intergenic 15.0%
!! ATACATATATGAAAAACAAA+GGG + Chr1:93328833-93328852 None:intergenic 15.0%
!! ATCTTAATCTAATAATATAC+CGG - Chr1:93329246-93329265 MsG0180005561.01.T01:exon 15.0%
!! CAATTTGATGTTTATATAAA+TGG + Chr1:93327769-93327788 None:intergenic 15.0%
!! CATTTATATAAACATCAAAT+TGG - Chr1:93327767-93327786 MsG0180005561.01.T01:CDS 15.0%
!!! TATGTATTTTTCTGTATTAT+TGG - Chr1:93328846-93328865 MsG0180005561.01.T01:intron 15.0%
!!! TTTTTTTTTTGGAATCAATA+TGG + Chr1:93327376-93327395 None:intergenic 15.0%
!! AAATTACATTTCCATAAAGA+AGG + Chr1:93326852-93326871 None:intergenic 20.0%
!! AATTACATTTCCATAAAGAA+GGG + Chr1:93326851-93326870 None:intergenic 20.0%
!! AATTTGTGTCATATTATTGA+AGG + Chr1:93328031-93328050 None:intergenic 20.0%
!! ATTATATAGAATAGCCAAAT+TGG + Chr1:93328107-93328126 None:intergenic 20.0%
!! CTCTTATATCAATAGTAAAT+TGG - Chr1:93327470-93327489 MsG0180005561.01.T01:CDS 20.0%
!! TAAGAAAAATTATGAGTGAA+AGG + Chr1:93326816-93326835 None:intergenic 20.0%
!! TGAAAAATGGCAATTTAATT+GGG + Chr1:93327416-93327435 None:intergenic 20.0%
!! TGAACATAATTAGTAAAAAC+TGG + Chr1:93329126-93329145 None:intergenic 20.0%
!! TGTATTAAATAATACAGAGA+TGG - Chr1:93328600-93328619 MsG0180005561.01.T01:intron 20.0%
!!! AATTATAAGCTGTTTTCATA+TGG - Chr1:93327100-93327119 MsG0180005561.01.T01:CDS 20.0%
!!! GTATTATTGGTTTCATTATA+TGG - Chr1:93328859-93328878 MsG0180005561.01.T01:intron 20.0%
! AAAACAAAGAATAAACACCT+AGG + Chr1:93327959-93327978 None:intergenic 25.0%
! AAGCAGTTAAAATACCAATT+TGG - Chr1:93328090-93328109 MsG0180005561.01.T01:intron 25.0%
! ATGACAAAAATATTGAAGCT+TGG - Chr1:93328155-93328174 MsG0180005561.01.T01:intron 25.0%
! ATTTCTATTACGATGAGATA+AGG - Chr1:93327059-93327078 MsG0180005561.01.T01:CDS 25.0%
! ATTTCTTATGAGAAATAGAG+AGG + Chr1:93329301-93329320 None:intergenic 25.0%
! ATTTGACGTCACAAATAATT+TGG + Chr1:93327798-93327817 None:intergenic 25.0%
! CTAATTATGTTCACATAGAT+TGG - Chr1:93329133-93329152 MsG0180005561.01.T01:exon 25.0%
! GTGAAAAATGGCAATTTAAT+TGG + Chr1:93327417-93327436 None:intergenic 25.0%
! TAGAAAATTAAGAGCAAGTT+TGG + Chr1:93327246-93327265 None:intergenic 25.0%
! TTGGCTATTCTATATAATGA+TGG - Chr1:93328109-93328128 MsG0180005561.01.T01:intron 25.0%
! TTTATCAAATCCCTTCTTTA+TGG - Chr1:93326838-93326857 MsG0180005561.01.T01:exon 25.0%
! TTTCTTATGAGAAATAGAGA+GGG + Chr1:93329300-93329319 None:intergenic 25.0%
! TTTGACGTCACAAATAATTT+GGG + Chr1:93327797-93327816 None:intergenic 25.0%
!! TCTCTATTTCTCATAAGAAA+TGG - Chr1:93329300-93329319 MsG0180005561.01.T01:exon 25.0%
!! TTAGACCATTTTCTTTCAAT+TGG - Chr1:93326994-93327013 MsG0180005561.01.T01:CDS 25.0%
!! TTTTGAGCAAGTGTATATAT+TGG - Chr1:93327706-93327725 MsG0180005561.01.T01:CDS 25.0%
!!! AATATTTTTGTCATGTACCT+TGG + Chr1:93328149-93328168 None:intergenic 25.0%
!!! AGTATTAAATTTGGTGTAAG+TGG - Chr1:93327894-93327913 MsG0180005561.01.T01:CDS 25.0%
!!! ATATTTTTGTCATGTACCTT+GGG + Chr1:93328148-93328167 None:intergenic 25.0%
!!! GTATTAAATTTGGTGTAAGT+GGG - Chr1:93327895-93327914 MsG0180005561.01.T01:CDS 25.0%
!!! TATTAAATTTGGTGTAAGTG+GGG - Chr1:93327896-93327915 MsG0180005561.01.T01:CDS 25.0%
!!! TGTTGTTTTCGTTGTTATTT+GGG - Chr1:93327271-93327290 MsG0180005561.01.T01:intron 25.0%
!!! TTCTATATAATGATGGACTT+AGG - Chr1:93328116-93328135 MsG0180005561.01.T01:intron 25.0%
ACACAAATTTATGCTTTCCT+TGG - Chr1:93328042-93328061 MsG0180005561.01.T01:intron 30.0%
ATAACTACATGTGAGTCTTT+CGG + Chr1:93327189-93327208 None:intergenic 30.0%
ATTTGCACATGACATCAAAT+TGG - Chr1:93327737-93327756 MsG0180005561.01.T01:CDS 30.0%
CTAAATGGAAGTGAAGAATT+AGG + Chr1:93329178-93329197 None:intergenic 30.0%
CTCATCGTAATAGAAATACA+TGG + Chr1:93327056-93327075 None:intergenic 30.0%
GAAAAGAATATCTGGTGAAT+GGG - Chr1:93328189-93328208 MsG0180005561.01.T01:intron 30.0%
GAAGAATGACATAATAGAGT+TGG - Chr1:93328516-93328535 MsG0180005561.01.T01:exon 30.0%
GATAGACAAGATGAAATGAA+GGG + Chr1:93327664-93327683 None:intergenic 30.0%
GTTTCTCTCTTTCTTCTAAA+TGG + Chr1:93329193-93329212 None:intergenic 30.0%
TATTACTTCCTAAGCAACTA+TGG - Chr1:93328964-93328983 MsG0180005561.01.T01:intron 30.0%
TGATGCCAAAAAGGATATTT+GGG - Chr1:93326952-93326971 MsG0180005561.01.T01:exon 30.0%
TTCAAAAACAGATGAACTCA+AGG + Chr1:93327686-93327705 None:intergenic 30.0%
TTGAGATAACTTCAGTTGTA+TGG - Chr1:93327296-93327315 MsG0180005561.01.T01:CDS 30.0%
TTGATTGCTTCAGATATTTC+TGG - Chr1:93328733-93328752 MsG0180005561.01.T01:intron 30.0%
TTGTGTCATATTATTGAAGG+TGG + Chr1:93328028-93328047 None:intergenic 30.0%
! AAAACCCCAAATATCCTTTT+TGG + Chr1:93326960-93326979 None:intergenic 30.0%
! ACAACACATTAGAAAGTATG+AGG + Chr1:93327439-93327458 None:intergenic 30.0%
! AGAAAGTATGAGGTGAAAAA+TGG + Chr1:93327429-93327448 None:intergenic 30.0%
! AGAAATATCTGAAGCAATCA+AGG + Chr1:93328734-93328753 None:intergenic 30.0%
! ATCCACAAGATTTTGAATCT+CGG - Chr1:93328554-93328573 MsG0180005561.01.T01:exon 30.0%
! CATAATATGTAACTTGCCTT+CGG + Chr1:93329098-93329117 None:intergenic 30.0%
! GAAATATCTGAAGCAATCAA+GGG + Chr1:93328733-93328752 None:intergenic 30.0%
!! AAAAGGATATTTGGGGTTTT+CGG - Chr1:93326960-93326979 MsG0180005561.01.T01:exon 30.0%
!! ATTAAATTTGGTGTAAGTGG+GGG - Chr1:93327897-93327916 MsG0180005561.01.T01:CDS 30.0%
!! TAATGTCGCCTATATTTTGA+AGG - Chr1:93327932-93327951 MsG0180005561.01.T01:intron 30.0%
!!! CTGTTGTTTTCGTTGTTATT+TGG - Chr1:93327270-93327289 MsG0180005561.01.T01:intron 30.0%
!!! GTTGTTTTCGTTGTTATTTG+GGG - Chr1:93327272-93327291 MsG0180005561.01.T01:intron 30.0%
AAAACAAAGGGTAACAAGAG+AGG + Chr1:93328821-93328840 None:intergenic 35.0%
AAACTCTAACTGAAGTAGGA+TGG - Chr1:93329015-93329034 MsG0180005561.01.T01:intron 35.0%
ACAAGATGAAATGAAGGGAA+GGG + Chr1:93327659-93327678 None:intergenic 35.0%
ACATGGTCAAGTGTGATTAA+TGG + Chr1:93327039-93327058 None:intergenic 35.0%
ACCTAGGTCCTTCAAAATAT+AGG + Chr1:93327943-93327962 None:intergenic 35.0%
ACTTCAGTTGTATGGTTGAT+TGG - Chr1:93327304-93327323 MsG0180005561.01.T01:CDS 35.0%
AGACTTCAGTAATCAAGGAA+AGG - Chr1:93328225-93328244 MsG0180005561.01.T01:intron 35.0%
AGTTGATCACCATTTCTGAA+CGG + Chr1:93328667-93328686 None:intergenic 35.0%
ATGAATTCCAAACAAGACCA+AGG + Chr1:93328062-93328081 None:intergenic 35.0%
CAATTCGCGAAAAGAATATC+TGG - Chr1:93328181-93328200 MsG0180005561.01.T01:intron 35.0%
CGAAAAGAATATCTGGTGAA+TGG - Chr1:93328188-93328207 MsG0180005561.01.T01:intron 35.0%
CTCCTCCAATTGAAAGAAAA+TGG + Chr1:93327002-93327021 None:intergenic 35.0%
CTGATGCCAAAAAGGATATT+TGG - Chr1:93326951-93326970 MsG0180005561.01.T01:exon 35.0%
GATGCCAAAAAGGATATTTG+GGG - Chr1:93326953-93326972 MsG0180005561.01.T01:exon 35.0%
GGATAGACAAGATGAAATGA+AGG + Chr1:93327665-93327684 None:intergenic 35.0%
TAGATGTGAAGAGGATGAAA+GGG + Chr1:93326777-93326796 None:intergenic 35.0%
TATCAGGCTATCAATTTCGA+CGG + Chr1:93327570-93327589 None:intergenic 35.0%
TGGTTGATTGGAGTGAAAAA+TGG - Chr1:93327316-93327335 MsG0180005561.01.T01:CDS 35.0%
TTCAGAAATGGTGATCAACT+TGG - Chr1:93328667-93328686 MsG0180005561.01.T01:intron 35.0%
! AAGATTTTGAATCTCGGGTT+AGG - Chr1:93328560-93328579 MsG0180005561.01.T01:intron 35.0%
! CATTTTCTTTCAATTGGAGG+AGG - Chr1:93327000-93327019 MsG0180005561.01.T01:CDS 35.0%
! GACCATTTTCTTTCAATTGG+AGG - Chr1:93326997-93327016 MsG0180005561.01.T01:CDS 35.0%
! GAGTGTTTGACTCTAAAAAC+AGG - Chr1:93327492-93327511 MsG0180005561.01.T01:CDS 35.0%
! TAGGATGGCTTTTAGATCAA+GGG - Chr1:93329030-93329049 MsG0180005561.01.T01:intron 35.0%
! TATGTTCACATAGATTGGCT+TGG - Chr1:93329138-93329157 MsG0180005561.01.T01:exon 35.0%
! TCCACAAGATTTTGAATCTC+GGG - Chr1:93328555-93328574 MsG0180005561.01.T01:exon 35.0%
! TGAAAGGAAGTACATACATG+TGG + Chr1:93326800-93326819 None:intergenic 35.0%
! TGTCATATTTCTGCCCAAAT+TGG - Chr1:93327829-93327848 MsG0180005561.01.T01:CDS 35.0%
!! AGCTGTTTTCATATGGTGTA+CGG - Chr1:93327107-93327126 MsG0180005561.01.T01:CDS 35.0%
!! CTTCAGATATTTCTGGTATC+TGG - Chr1:93328740-93328759 MsG0180005561.01.T01:intron 35.0%
AACAGTGGGAAGTAACTGAA+CGG + Chr1:93328374-93328393 None:intergenic 40.0%
AACGAACACCATAGTTGCTT+AGG + Chr1:93328975-93328994 None:intergenic 40.0%
AAGCAGACATGAAGCTGAAA+AGG + Chr1:93326884-93326903 None:intergenic 40.0%
ACCCGAGATTCAAAATCTTG+TGG + Chr1:93328559-93328578 None:intergenic 40.0%
AGAAATGGTGATCAACTTGG+AGG - Chr1:93328670-93328689 MsG0180005561.01.T01:intron 40.0%
AGAATATCTGGTGAATGGGA+TGG - Chr1:93328193-93328212 MsG0180005561.01.T01:intron 40.0%
AGAGTTCACTGATGCCAAAA+AGG - Chr1:93326943-93326962 MsG0180005561.01.T01:exon 40.0%
AGCAGACATGAAGCTGAAAA+GGG + Chr1:93326883-93326902 None:intergenic 40.0%
AGGATCATGTTCTTGAGTAC+AGG - Chr1:93328347-93328366 MsG0180005561.01.T01:intron 40.0%
AGTCTTTCGGAAGAGCTTAT+AGG + Chr1:93327176-93327195 None:intergenic 40.0%
AGTTCGGATGAGAGAAAAGT+GGG - Chr1:93328424-93328443 MsG0180005561.01.T01:intron 40.0%
ATACTTTGACCTCCCATTCT+CGG + Chr1:93328288-93328307 None:intergenic 40.0%
ATGCAGAAGTCTGTTAGAGA+TGG - Chr1:93328930-93328949 MsG0180005561.01.T01:intron 40.0%
ATGGCTTTCTATTTGACTCC+AGG - Chr1:93328878-93328897 MsG0180005561.01.T01:intron 40.0%
GACAAGATGAAATGAAGGGA+AGG + Chr1:93327660-93327679 None:intergenic 40.0%
GGAGTGAAAAATGGACATGT+GGG - Chr1:93327325-93327344 MsG0180005561.01.T01:CDS 40.0%
GGTGAAACTCTAACTGAAGT+AGG - Chr1:93329011-93329030 MsG0180005561.01.T01:intron 40.0%
GTAGATGTGAAGAGGATGAA+AGG + Chr1:93326778-93326797 None:intergenic 40.0%
GTGTTCGTTTGAACGAAACA+AGG - Chr1:93328986-93329005 MsG0180005561.01.T01:intron 40.0%
TACATGTGGTAGATGTGAAG+AGG + Chr1:93326786-93326805 None:intergenic 40.0%
TACTCAAGAACATGATCCTC+TGG + Chr1:93328346-93328365 None:intergenic 40.0%
TAGAAGCGAAAGCAGAATCA+CGG + Chr1:93328705-93328724 None:intergenic 40.0%
TCGTTTGAACGAAACAAGGA+TGG - Chr1:93328990-93329009 MsG0180005561.01.T01:intron 40.0%
TGCTTCCTTTGCATCTTGAT+TGG + Chr1:93327537-93327556 None:intergenic 40.0%
TGGAGTGAAAAATGGACATG+TGG - Chr1:93327324-93327343 MsG0180005561.01.T01:CDS 40.0%
TTTCTTTCAATTGGAGGAGG+AGG - Chr1:93327003-93327022 MsG0180005561.01.T01:CDS 40.0%
! GGGAGGTCAAAGTATTTGAT+TGG - Chr1:93328293-93328312 MsG0180005561.01.T01:intron 40.0%
! GTAGGATGGCTTTTAGATCA+AGG - Chr1:93329029-93329048 MsG0180005561.01.T01:intron 40.0%
! GTCGAAATTGATAGCCTGAT+AGG - Chr1:93327569-93327588 MsG0180005561.01.T01:CDS 40.0%
! GTGATCTTTCGAGAGCTTTT+AGG - Chr1:93328900-93328919 MsG0180005561.01.T01:intron 40.0%
! TTAGAGTATTTCGTGAGCAG+TGG - Chr1:93328635-93328654 MsG0180005561.01.T01:intron 40.0%
!! AGATATTTCTGGTATCTGGC+AGG - Chr1:93328744-93328763 MsG0180005561.01.T01:intron 40.0%
!! ATGCTTTCCTTGGTCTTGTT+TGG - Chr1:93328052-93328071 MsG0180005561.01.T01:intron 40.0%
!! ATTTGGGGTTTTCGGATTAC+TGG - Chr1:93326968-93326987 MsG0180005561.01.T01:exon 40.0%
!! GATATTTCTGGTATCTGGCA+GGG - Chr1:93328745-93328764 MsG0180005561.01.T01:intron 40.0%
!! GCCTATATTTTGAAGGACCT+AGG - Chr1:93327939-93327958 MsG0180005561.01.T01:intron 40.0%
!! GCTGTTTTCATATGGTGTAC+GGG - Chr1:93327108-93327127 MsG0180005561.01.T01:CDS 40.0%
!! TTTGGGGTTTTCGGATTACT+GGG - Chr1:93326969-93326988 MsG0180005561.01.T01:exon 40.0%
!! TTTTTGGCATCAGTGAACTC+TGG + Chr1:93326944-93326963 None:intergenic 40.0%
AAAGCTCTCGAAAGATCACC+TGG + Chr1:93328899-93328918 None:intergenic 45.0%
AAGAGAGGTCCTTACACTTC+CGG + Chr1:93328806-93328825 None:intergenic 45.0%
AATACAGAGATGGAGCTGCA+AGG - Chr1:93328610-93328629 MsG0180005561.01.T01:intron 45.0%
ACTGTATACCGTAGCAGCAT+CGG + Chr1:93328407-93328426 None:intergenic 45.0%
AGAGAGGGTCTCTACCTTAT+TGG + Chr1:93329285-93329304 None:intergenic 45.0%
ATGTGAAGAGGATGAAAGGG+TGG + Chr1:93326774-93326793 None:intergenic 45.0%
CAACATAAGAGCCACTGGAT+TGG + Chr1:93328483-93328502 None:intergenic 45.0%
CAGTTCGGATGAGAGAAAAG+TGG - Chr1:93328423-93328442 MsG0180005561.01.T01:intron 45.0%
CTTCACTCAGTACACCTATC+AGG + Chr1:93327586-93327605 None:intergenic 45.0%
GCAAGTCACACTCACCAATA+AGG - Chr1:93329268-93329287 MsG0180005561.01.T01:exon 45.0%
GGAGCAGACTTCAGTAATCA+AGG - Chr1:93328220-93328239 MsG0180005561.01.T01:intron 45.0%
GGTAATTGAACTGCCAGAGT+CGG - Chr1:93328246-93328265 MsG0180005561.01.T01:intron 45.0%
GTATTTCGTGAGCAGTGGTA+TGG - Chr1:93328640-93328659 MsG0180005561.01.T01:intron 45.0%
GTGGCTCTTATGTTGCTGTA+TGG - Chr1:93328488-93328507 MsG0180005561.01.T01:exon 45.0%
GTTCAGTTACTTCCCACTGT+TGG - Chr1:93328373-93328392 MsG0180005561.01.T01:intron 45.0%
TACAGCAACATAAGAGCCAC+TGG + Chr1:93328488-93328507 None:intergenic 45.0%
TGCAGCCAATCAAGATGCAA+AGG - Chr1:93327529-93327548 MsG0180005561.01.T01:CDS 45.0%
TGCTGCTACGGTATACAGTT+CGG - Chr1:93328408-93328427 MsG0180005561.01.T01:intron 45.0%
TGGTATGGACCGTTCAGAAA+TGG - Chr1:93328655-93328674 MsG0180005561.01.T01:intron 45.0%
TTACACTTCCGGTGTCTGTA+GGG + Chr1:93328795-93328814 None:intergenic 45.0%
! ACTTTTAGCCCTACAGACAC+CGG - Chr1:93328784-93328803 MsG0180005561.01.T01:intron 45.0%
! ATGGCTTTTAGATCAAGGGC+AGG - Chr1:93329034-93329053 MsG0180005561.01.T01:intron 45.0%
! TATTGGTGAGTGTGACTTGC+CGG + Chr1:93329268-93329287 None:intergenic 45.0%
! TCTGGTGAATGGGATGGATT+TGG - Chr1:93328199-93328218 MsG0180005561.01.T01:intron 45.0%
! TGGACTTAGGACTTTTCCCA+AGG - Chr1:93328129-93328148 MsG0180005561.01.T01:intron 45.0%
!! ACTGGATTGGTAAGCAAAGG+CGG + Chr1:93328470-93328489 None:intergenic 45.0%
!! GTTCACATAGATTGGCTTGG+AGG - Chr1:93329141-93329160 MsG0180005561.01.T01:exon 45.0%
AATTGAACTGCCAGAGTCGG+TGG - Chr1:93328249-93328268 MsG0180005561.01.T01:intron 50.0%
ACTTCCCACTGTTGGATGTG+AGG - Chr1:93328381-93328400 MsG0180005561.01.T01:intron 50.0%
ATCCTCTGGATCAGCAAGAG+TGG + Chr1:93328332-93328351 None:intergenic 50.0%
CACCCTTCGAGGACCAATTT+GGG + Chr1:93327845-93327864 None:intergenic 50.0%
CTTACACTTCCGGTGTCTGT+AGG + Chr1:93328796-93328815 None:intergenic 50.0%
GAAAGGGTGGAGAAAGAACG+TGG + Chr1:93326761-93326780 None:intergenic 50.0%
GCCTGAAGCATACCGAGAAT+GGG - Chr1:93328273-93328292 MsG0180005561.01.T01:intron 50.0%
GCCTTTGCTTACCAATCCAG+TGG - Chr1:93328469-93328488 MsG0180005561.01.T01:intron 50.0%
GGTGTCTGTAGGGCTAAAAG+TGG + Chr1:93328785-93328804 None:intergenic 50.0%
TCACCCTTCGAGGACCAATT+TGG + Chr1:93327846-93327865 None:intergenic 50.0%
TCCCATTCTCGGTATGCTTC+AGG + Chr1:93328277-93328296 None:intergenic 50.0%
TCCTCTGGATCAGCAAGAGT+GGG + Chr1:93328331-93328350 None:intergenic 50.0%
TCGGATGAGAGAAAAGTGGG+CGG - Chr1:93328427-93328446 MsG0180005561.01.T01:intron 50.0%
TGAAGCATACCGAGAATGGG+AGG - Chr1:93328276-93328295 MsG0180005561.01.T01:intron 50.0%
TGCCCAAATTGGTCCTCGAA+GGG - Chr1:93327840-93327859 MsG0180005561.01.T01:CDS 50.0%
TGCCTGAAGCATACCGAGAA+TGG - Chr1:93328272-93328291 MsG0180005561.01.T01:intron 50.0%
! CTACAGACACCGGAAGTGTA+AGG - Chr1:93328794-93328813 MsG0180005561.01.T01:intron 50.0%
!! GATTGGCTTGGAGGATCACA+TGG - Chr1:93329150-93329169 MsG0180005561.01.T01:exon 50.0%
!! GCCACTGGATTGGTAAGCAA+AGG + Chr1:93328473-93328492 None:intergenic 50.0%
AGCACCAGTTTCACCCTTCG+AGG + Chr1:93327856-93327875 None:intergenic 55.0%
ATCGGCCTCACATCCAACAG+TGG + Chr1:93328389-93328408 None:intergenic 55.0%
ATGTGAGGCCGATGCTGCTA+CGG - Chr1:93328396-93328415 MsG0180005561.01.T01:intron 55.0%
CCTCTGGATCAGCAAGAGTG+GGG + Chr1:93328330-93328349 None:intergenic 55.0%
CTGCCCAAATTGGTCCTCGA+AGG - Chr1:93327839-93327858 MsG0180005561.01.T01:CDS 55.0%
TCGGCCTCACATCCAACAGT+GGG + Chr1:93328388-93328407 None:intergenic 55.0%
TGGTCCTCGAAGGGTGAAAC+TGG - Chr1:93327849-93327868 MsG0180005561.01.T01:CDS 55.0%
! CTCAAGCACTGCAAAGCCGA+AGG - Chr1:93329079-93329098 MsG0180005561.01.T01:exon 55.0%
AAAGTGGGCGGCGAAAGCAG+TGG - Chr1:93328439-93328458 MsG0180005561.01.T01:intron 60.0%
CCCCACTCTTGCTGATCCAG+AGG - Chr1:93328327-93328346 MsG0180005561.01.T01:intron 60.0%
!! GCTTCAGGCACCACCGACTC+TGG + Chr1:93328262-93328281 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 93326756 93329333 93326756 ID=MsG0180005561.01;
Chr1 mRNA 93326756 93329333 93326756 ID=MsG0180005561.01.T01;Parent=MsG0180005561.01
Chr1 exon 93326756 93327189 93326756 ID=MsG0180005561.01.T01.exon;Parent=MsG0180005561.01.T01
Chr1 CDS 93326971 93327189 93326971 ID=MsG0180005561.01.T01.cds;Parent=MsG0180005561.01.T01
Chr1 CDS 93327279 93327938 93327279 ID=MsG0180005561.01.T01.cds;Parent=MsG0180005561.01.T01
Chr1 exon 93327279 93327938 93327279 ID=MsG0180005561.01.T01.exon;Parent=MsG0180005561.01.T01
Chr1 CDS 93328470 93328565 93328470 ID=MsG0180005561.01.T01.cds;Parent=MsG0180005561.01.T01
Chr1 exon 93328470 93328575 93328470 ID=MsG0180005561.01.T01.exon;Parent=MsG0180005561.01.T01
Chr1 exon 93329065 93329333 93329065 ID=MsG0180005561.01.T01.exon;Parent=MsG0180005561.01.T01
Gene Sequence

>MsG0180005561.01.T01

ATGTGTGCAGCCAATCAAGATGCAAAGGAAGCAGTGAAAGTAGCCGTCGAAATTGATAGCCTGATAGGTGTACTGAGTGAAGTTGATTCTCATCAAGTACATGACAAAAATATTGAAGCTTGGTCACAATTCGCGAAAAGAATATCTGGTGAATGGGATGGATTTGGAGCAGACTTCAGTAATCAAGGAAAGGTAATTGAACTGCCAGAGTCGGTGGTGCCTGAAGCATACCGAGAATGGGAGGTCAAAGTATTTGATTGGCAGACTCAATGCCCCACTCTTGCTGATCCAGAGGATCATGTTCTTGAGTACAGGTCCGTTCAGTTACTTCCCACTGTTGGATGTGAGGCCGATGCTGCTACGGTATACAGTTCGGATGAGAGAAAAGTGGGCGGCGAAAGCAGTGGAGTTACCGCCTTTGCTTACCAATCCAGTGGCTCTTATGTTGCTGTATGGCAGAAGAAGAATGACATAATAGAGTTGGAATACTGCTTGATCAATCCACAAGATTTTGAATCTCGGGTTAGGTTTATTCAGCGTATACGTGTATTAAATAATACAGAGATGGAGCTGCAAGGTATTAGAGTATTTCGTGAGCAGTGGTATGGACCGTTCAGAAATGGTGATCAACTTGGAGGTTGTGCTATCCGTGATTCTGCTTTCGCTTCTACAGCACCCTTGATTGCTTCAGATATTTCTGGTATCTGGCAGGGATCTAAAGCTGTCACCACTTTTAGCCCTACAGACACCGGAAGTGTGATCTTTCGAGAGCTTTTAGGTGACGAAATGCAGAAGTCTGTTAGAGATGGAGAAAACAATGTATTACTTCCTAAGCAACTATGGTGTTCGTTTGAACGAAACAAGGATGGTGAAACTCTAACTGAAGTAGGATGGCTTTTAGATCAAGGGCAGGCAATCACATCAAGCTGCTTATTCTCAAGCACTGCAAAGCCGAAGGCAAGTTACATATTATGA

Protein sequence

>MsG0180005561.01.T01

MCAANQDAKEAVKVAVEIDSLIGVLSEVDSHQVHDKNIEAWSQFAKRISGEWDGFGADFSNQGKVIELPESVVPEAYREWEVKVFDWQTQCPTLADPEDHVLEYRSVQLLPTVGCEADAATVYSSDERKVGGESSGVTAFAYQSSGSYVAVWQKKNDIIELEYCLINPQDFESRVRFIQRIRVLNNTEMELQGIRVFREQWYGPFRNGDQLGGCAIRDSAFASTAPLIASDISGIWQGSKAVTTFSPTDTGSVIFRELLGDEMQKSVRDGENNVLLPKQLWCSFERNKDGETLTEVGWLLDQGQAITSSCLFSSTAKPKASYIL*