Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040914.01.T01 | XP_013449980.1 | 100 | 73 | 0 | 0 | 1 | 73 | 1 | 73 | 8.19E-43 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040914.01.T01 | Q7XLX6 | 65 | 80 | 21 | 1 | 1 | 73 | 1 | 80 | 7.34E-15 | 65.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040914.01.T01 | A0A072U4F5 | 100.000 | 73 | 0 | 0 | 1 | 73 | 1 | 73 | 3.91e-43 | 143 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0780040914.01.T01 | TF | S1Fa-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048273.01 | MsG0780040914.01 | -0.808287 | 3.335903e-50 | 1.899875e-47 |
| MsG0080048845.01 | MsG0780040914.01 | -0.844538 | 7.107349e-59 | 1.151060e-55 |
| MsG0080048938.01 | MsG0780040914.01 | -0.810075 | 1.380589e-50 | 8.243085e-48 |
| MsG0080049129.01 | MsG0780040914.01 | -0.803758 | 2.992306e-49 | 1.516128e-46 |
| MsG0080049130.01 | MsG0780040914.01 | -0.861265 | 1.158580e-63 | 3.259106e-60 |
| MsG0180000246.01 | MsG0780040914.01 | -0.806153 | 9.444415e-50 | 5.089162e-47 |
| MsG0180000843.01 | MsG0780040914.01 | -0.850230 | 1.941716e-60 | 3.777953e-57 |
| MsG0180003316.01 | MsG0780040914.01 | -0.838079 | 3.557877e-57 | 4.713244e-54 |
| MsG0180003352.01 | MsG0780040914.01 | -0.804800 | 1.815575e-49 | 9.449401e-47 |
| MsG0180004662.01 | MsG0780040914.01 | -0.813112 | 3.018698e-51 | 1.953721e-48 |
| MsG0180004934.01 | MsG0780040914.01 | -0.809323 | 2.002524e-50 | 1.172165e-47 |
| MsG0180005339.01 | MsG0780040914.01 | -0.816111 | 6.542391e-52 | 4.594686e-49 |
| MsG0180005416.01 | MsG0780040914.01 | -0.825453 | 4.648997e-54 | 4.239009e-51 |
| MsG0180005418.01 | MsG0780040914.01 | -0.817051 | 4.028911e-52 | 2.903239e-49 |
| MsG0180005561.01 | MsG0780040914.01 | -0.831316 | 1.788819e-55 | 1.934128e-52 |
| MsG0180005741.01 | MsG0780040914.01 | 0.820696 | 5.983943e-53 | 4.768605e-50 |
| MsG0180005803.01 | MsG0780040914.01 | -0.824829 | 6.529506e-54 | 5.849474e-51 |
| MsG0180005829.01 | MsG0780040914.01 | -0.803418 | 3.519911e-49 | 1.767926e-46 |
| MsG0280006319.01 | MsG0780040914.01 | -0.827959 | 1.172456e-54 | 1.149268e-51 |
| MsG0780040914.01 | MsG0780041004.01 | -0.816043 | 6.778159e-52 | 4.751498e-49 |
| MsG0780040914.01 | MsG0780041272.01 | -0.802891 | 4.523385e-49 | 2.241540e-46 |
| MsG0780040914.01 | MsG0780041385.01 | -0.819177 | 1.331640e-52 | 1.017317e-49 |
| MsG0780040914.01 | MsG0780041668.01 | -0.835249 | 1.872794e-56 | 2.277423e-53 |
| MsG0780040914.01 | MsG0780041778.01 | -0.805522 | 1.281665e-49 | 6.795202e-47 |
| MsG0780040914.01 | MsG0880041850.01 | -0.805534 | 1.274560e-49 | 6.759529e-47 |
| MsG0780040914.01 | MsG0880042000.01 | -0.818508 | 1.890271e-52 | 1.417665e-49 |
| MsG0780040914.01 | MsG0880042343.01 | -0.803955 | 2.722985e-49 | 1.386728e-46 |
| MsG0780040914.01 | MsG0880042690.01 | -0.823074 | 1.684528e-53 | 1.435701e-50 |
| MsG0780040914.01 | MsG0880043235.01 | -0.838390 | 2.959031e-57 | 3.957425e-54 |
| MsG0780040914.01 | MsG0880044105.01 | -0.855403 | 6.458534e-62 | 1.489485e-58 |
| MsG0780040914.01 | MsG0880044834.01 | -0.817582 | 3.060976e-52 | 2.237902e-49 |
| MsG0780040914.01 | MsG0880044884.01 | -0.804962 | 1.678828e-49 | 8.774486e-47 |
| MsG0780040914.01 | MsG0880046048.01 | -0.805199 | 1.498151e-49 | 7.877498e-47 |
| MsG0780040914.01 | MsG0880046324.01 | -0.842767 | 2.114560e-58 | 3.238992e-55 |
| MsG0780040914.01 | MsG0880046533.01 | -0.820636 | 6.177852e-53 | 4.914657e-50 |
| MsG0780040914.01 | MsG0880046723.01 | -0.810123 | 1.347677e-50 | 8.056842e-48 |
| MsG0780040914.01 | MsG0880046735.01 | -0.833507 | 5.124713e-56 | 5.913922e-53 |
| MsG0780040914.01 | MsG0880047111.01 | -0.831664 | 1.468841e-55 | 1.604693e-52 |
| MsG0280010905.01 | MsG0780040914.01 | -0.804088 | 2.555231e-49 | 1.305693e-46 |
| MsG0280010998.01 | MsG0780040914.01 | -0.830800 | 2.395181e-55 | 2.550563e-52 |
| MsG0280011362.01 | MsG0780040914.01 | -0.817724 | 2.842923e-52 | 2.086723e-49 |
| MsG0280011411.01 | MsG0780040914.01 | -0.814410 | 1.562578e-51 | 1.047749e-48 |
| MsG0380011662.01 | MsG0780040914.01 | -0.814971 | 1.174122e-51 | 7.992133e-49 |
| MsG0380013177.01 | MsG0780040914.01 | -0.834442 | 2.990532e-56 | 3.549392e-53 |
| MsG0680031406.01 | MsG0780040914.01 | -0.801787 | 7.634489e-49 | 3.678297e-46 |
| MsG0680032006.01 | MsG0780040914.01 | -0.811382 | 7.198033e-51 | 4.449022e-48 |
| MsG0480019573.01 | MsG0780040914.01 | -0.829541 | 4.858400e-55 | 4.987194e-52 |
| MsG0480020350.01 | MsG0780040914.01 | -0.800747 | 1.246821e-48 | 5.851106e-46 |
| MsG0480021207.01 | MsG0780040914.01 | -0.819349 | 1.217234e-52 | 9.342607e-50 |
| MsG0480021406.01 | MsG0780040914.01 | -0.807121 | 5.900397e-50 | 3.259312e-47 |
| MsG0480021875.01 | MsG0780040914.01 | -0.802088 | 6.623423e-49 | 3.215659e-46 |
| MsG0480021999.01 | MsG0780040914.01 | -0.809389 | 1.938779e-50 | 1.136854e-47 |
| MsG0480022617.01 | MsG0780040914.01 | -0.845142 | 4.882835e-59 | 8.059586e-56 |
| MsG0480022664.01 | MsG0780040914.01 | -0.818469 | 1.928824e-52 | 1.445135e-49 |
| MsG0480022805.01 | MsG0780040914.01 | -0.830001 | 3.754632e-55 | 3.906092e-52 |
| MsG0480022918.01 | MsG0780040914.01 | -0.829644 | 4.585795e-55 | 4.721921e-52 |
| MsG0480022954.01 | MsG0780040914.01 | 0.803444 | 3.475830e-49 | 1.746945e-46 |
| MsG0480023395.01 | MsG0780040914.01 | -0.859393 | 4.266909e-63 | 1.125264e-59 |
| MsG0480023565.01 | MsG0780040914.01 | -0.811814 | 5.798286e-51 | 3.625025e-48 |
| MsG0480023616.01 | MsG0780040914.01 | -0.831486 | 1.624521e-55 | 1.765432e-52 |
| MsG0580024201.01 | MsG0780040914.01 | -0.877474 | 6.106504e-69 | 3.074473e-65 |
| MsG0580024285.01 | MsG0780040914.01 | -0.800487 | 1.408517e-48 | 6.566540e-46 |
| MsG0580024567.01 | MsG0780040914.01 | -0.817014 | 4.106547e-52 | 2.956257e-49 |
| MsG0580024717.01 | MsG0780040914.01 | -0.827119 | 1.865373e-54 | 1.784106e-51 |
| MsG0580024763.01 | MsG0780040914.01 | -0.835670 | 1.465978e-56 | 1.805150e-53 |
| MsG0580024764.01 | MsG0780040914.01 | -0.818516 | 1.881600e-52 | 1.411542e-49 |
| MsG0580024836.01 | MsG0780040914.01 | -0.812672 | 3.768076e-51 | 2.410615e-48 |
| MsG0580025413.01 | MsG0780040914.01 | -0.848757 | 4.999402e-60 | 9.270749e-57 |
| MsG0580025906.01 | MsG0780040914.01 | -0.820845 | 5.531208e-53 | 4.426375e-50 |
| MsG0380015393.01 | MsG0780040914.01 | 0.802326 | 5.916970e-49 | 2.890309e-46 |
| MsG0380015496.01 | MsG0780040914.01 | -0.829039 | 6.433727e-55 | 6.507321e-52 |
| MsG0380015501.01 | MsG0780040914.01 | -0.808243 | 3.408859e-50 | 1.939198e-47 |
| MsG0380016066.01 | MsG0780040914.01 | -0.802967 | 4.363639e-49 | 2.166453e-46 |
| MsG0380016194.01 | MsG0780040914.01 | -0.803832 | 2.887501e-49 | 1.465854e-46 |
| MsG0380016284.01 | MsG0780040914.01 | -0.800827 | 1.200612e-48 | 5.645678e-46 |
| MsG0380016527.01 | MsG0780040914.01 | -0.819046 | 1.426238e-52 | 1.085732e-49 |
| MsG0380016542.01 | MsG0780040914.01 | -0.809452 | 1.879379e-50 | 1.103811e-47 |
| MsG0380016762.01 | MsG0780040914.01 | -0.843240 | 1.582043e-58 | 2.459695e-55 |
| MsG0380016997.01 | MsG0780040914.01 | -0.820430 | 6.886598e-53 | 5.448029e-50 |
| MsG0380017033.01 | MsG0780040914.01 | -0.821387 | 4.147993e-53 | 3.369853e-50 |
| MsG0480018089.01 | MsG0780040914.01 | -0.809881 | 1.519828e-50 | 9.028598e-48 |
| MsG0580026498.01 | MsG0780040914.01 | -0.801336 | 9.448642e-49 | 4.500686e-46 |
| MsG0580027098.01 | MsG0780040914.01 | -0.821235 | 4.496218e-53 | 3.637408e-50 |
| MsG0580027254.01 | MsG0780040914.01 | -0.813734 | 2.203301e-51 | 1.450460e-48 |
| MsG0580028024.01 | MsG0780040914.01 | -0.810456 | 1.142654e-50 | 6.890773e-48 |
| MsG0580028073.01 | MsG0780040914.01 | -0.800252 | 1.572787e-48 | 7.288811e-46 |
| MsG0580028092.01 | MsG0780040914.01 | -0.819487 | 1.131852e-52 | 8.722085e-50 |
| MsG0580028093.01 | MsG0780040914.01 | -0.807172 | 5.755650e-50 | 3.183684e-47 |
| MsG0580028353.01 | MsG0780040914.01 | -0.810497 | 1.119290e-50 | 6.757406e-48 |
| MsG0580028495.01 | MsG0780040914.01 | -0.841505 | 4.562072e-58 | 6.717571e-55 |
| MsG0580028925.01 | MsG0780040914.01 | -0.876134 | 1.777933e-68 | 8.522811e-65 |
| MsG0680030464.01 | MsG0780040914.01 | -0.801095 | 1.058257e-48 | 5.010692e-46 |
| MsG0280007423.01 | MsG0780040914.01 | -0.808784 | 2.612210e-50 | 1.507092e-47 |
| MsG0280007561.01 | MsG0780040914.01 | -0.804196 | 2.426007e-49 | 1.243067e-46 |
| MsG0280007874.01 | MsG0780040914.01 | 0.852107 | 5.734361e-61 | 1.185706e-57 |
| MsG0280008288.01 | MsG0780040914.01 | 0.840480 | 8.479538e-58 | 1.209356e-54 |
| MsG0280009435.01 | MsG0780040914.01 | -0.837909 | 3.934202e-57 | 5.185091e-54 |
| MsG0280009436.01 | MsG0780040914.01 | -0.824683 | 7.066681e-54 | 6.304608e-51 |
| MsG0280009542.01 | MsG0780040914.01 | -0.819633 | 1.048426e-52 | 8.111742e-50 |
| MsG0680035664.01 | MsG0780040914.01 | -0.863348 | 2.655103e-64 | 8.024488e-61 |
| MsG0680035665.01 | MsG0780040914.01 | -0.813826 | 2.102921e-51 | 1.387807e-48 |
| MsG0780037944.01 | MsG0780040914.01 | -0.823686 | 1.211805e-53 | 1.050888e-50 |
| MsG0780037946.01 | MsG0780040914.01 | -0.861127 | 1.275893e-63 | 3.571419e-60 |
| MsG0780039795.01 | MsG0780040914.01 | -0.821666 | 3.576497e-53 | 2.928383e-50 |
| MsG0780040155.01 | MsG0780040914.01 | -0.808317 | 3.286071e-50 | 1.873021e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040914.01.T01 | MTR_7g100905 | 100.000 | 73 | 0 | 0 | 1 | 73 | 1 | 73 | 9.91e-47 | 143 |
| MsG0780040914.01.T01 | MTR_7g100905 | 100.000 | 66 | 0 | 0 | 8 | 73 | 3 | 68 | 3.43e-41 | 129 |
| MsG0780040914.01.T01 | MTR_7g100880 | 85.897 | 78 | 6 | 1 | 1 | 73 | 7 | 84 | 2.90e-18 | 71.6 |
| MsG0780040914.01.T01 | MTR_7g100890 | 90.411 | 73 | 6 | 1 | 1 | 73 | 426 | 497 | 2.91e-16 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040914.01.T01 | AT2G37120 | 76.190 | 63 | 15 | 0 | 11 | 73 | 14 | 76 | 5.53e-15 | 63.2 |
| MsG0780040914.01.T01 | AT3G53370 | 80.000 | 60 | 12 | 0 | 14 | 73 | 17 | 76 | 1.77e-12 | 57.0 |
Find 16 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTGTTCTCCTGGTTAT+TGG | 0.231388 | 7:-84208247 | MsG0780040914.01.T01:CDS |
| CCCAGGCTTGATTGTTCTCC+TGG | 0.358351 | 7:-84208254 | MsG0780040914.01.T01:CDS |
| TGGGGAAATGTTTAGAATGC+TGG | 0.422488 | 7:-84208292 | MsG0780040914.01.T01:intron |
| GTTTAGAATGCTGGATCTCA+AGG | 0.468079 | 7:-84208283 | MsG0780040914.01.T01:intron |
| ACCAGGAGAACAATCAAGCC+TGG | 0.470447 | 7:+84208253 | None:intergenic |
| ATTGTTCTCCTGGTTATTGG+TGG | 0.489076 | 7:-84208244 | MsG0780040914.01.T01:CDS |
| TTGCTGTTGACATTTCTCAT+TGG | 0.497549 | 7:-84208220 | MsG0780040914.01.T01:CDS |
| AAGCAAGGAGTCTCTGCACC+TGG | 0.518649 | 7:-84208106 | MsG0780040914.01.T01:CDS |
| GTACAGTGCCTCTACTCTCC+AGG | 0.535553 | 7:+84208088 | None:intergenic |
| TTGTTCTCCTGGTTATTGGT+GGG | 0.546594 | 7:-84208243 | MsG0780040914.01.T01:CDS |
| GCTTTACGTTTATGCACAGA+AGG | 0.577488 | 7:-84208188 | MsG0780040914.01.T01:CDS |
| ACAGCAACCCACCAATAACC+AGG | 0.598951 | 7:+84208236 | None:intergenic |
| CCAGGAGAACAATCAAGCCT+GGG | 0.608678 | 7:+84208254 | None:intergenic |
| GGATCTCAAGGGTTCAACCC+AGG | 0.613072 | 7:-84208271 | MsG0780040914.01.T01:CDS |
| TTTAGAATGCTGGATCTCAA+GGG | 0.619147 | 7:-84208282 | MsG0780040914.01.T01:intron |
| TCTCTGCACCTGGAGAGTAG+AGG | 0.653251 | 7:-84208096 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAATATGAAGAATG+TGG | + | Chr7:84208170-84208189 | None:intergenic | 15.0% |
| !! | AAAATAAATATGAAGAATGT+GGG | + | Chr7:84208169-84208188 | None:intergenic | 15.0% |
| !! | CAATAAAAAAATATTTCCAA+AGG | + | Chr7:84209138-84209157 | None:intergenic | 15.0% |
| !! | GATCTATTCATAATTAAATT+AGG | - | Chr7:84208340-84208359 | MsG0780040914.01.T01:intron | 15.0% |
| !! | TTATTTGAGAATAACAATAA+GGG | + | Chr7:84208729-84208748 | None:intergenic | 15.0% |
| !!! | GATTTTTTTTTTTCACATTT+AGG | - | Chr7:84208362-84208381 | MsG0780040914.01.T01:intron | 15.0% |
| !! | AGATTCTACTTTGAATATAA+TGG | - | Chr7:84208953-84208972 | MsG0780040914.01.T01:intron | 20.0% |
| !! | CTTATTTGAGAATAACAATA+AGG | + | Chr7:84208730-84208749 | None:intergenic | 20.0% |
| !!! | ACAAAAAAAGCACTTAAATA+AGG | + | Chr7:84209181-84209200 | None:intergenic | 20.0% |
| !!! | TTTTCAGATCTTAAAATTCA+TGG | - | Chr7:84208187-84208206 | MsG0780040914.01.T01:CDS | 20.0% |
| !!! | TTTTTTTCACATTTAGGTTA+AGG | - | Chr7:84208368-84208387 | MsG0780040914.01.T01:intron | 20.0% |
| ! | CATATTACTATTTGCATACA+TGG | - | Chr7:84209070-84209089 | MsG0780040914.01.T01:intron | 25.0% |
| ! | CTCAAAAAAGAAGATGAAAA+AGG | - | Chr7:84209362-84209381 | MsG0780040914.01.T01:intron | 25.0% |
| ! | GGTTACAAATAACATCAATA+TGG | + | Chr7:84208708-84208727 | None:intergenic | 25.0% |
| !! | TTTACATGTCAATTTTCCTT+TGG | - | Chr7:84209119-84209138 | MsG0780040914.01.T01:intron | 25.0% |
| !!! | GGAATTGATTTGAAGAAAAT+CGG | + | Chr7:84208148-84208167 | None:intergenic | 25.0% |
| !!! | TGCTTTATTAGACACTTTTA+AGG | - | Chr7:84208441-84208460 | MsG0780040914.01.T01:intron | 25.0% |
| !!! | TTAATTTGAGAGTGTTTTTG+TGG | + | Chr7:84208891-84208910 | None:intergenic | 25.0% |
| AAAAGAAGATGAAAAAGGAG+AGG | - | Chr7:84209367-84209386 | MsG0780040914.01.T01:intron | 30.0% | |
| AACCATTCAACACAAATTGA+TGG | + | Chr7:84208661-84208680 | None:intergenic | 30.0% | |
| ATTCTCAAATAAGTCTGTGT+AGG | - | Chr7:84208737-84208756 | MsG0780040914.01.T01:intron | 30.0% | |
| ATTGCAGAGCAAATAAAGAA+TGG | + | Chr7:84209049-84209068 | None:intergenic | 30.0% | |
| GAAAATGCATATGATAAACC+TGG | + | Chr7:84208686-84208705 | None:intergenic | 30.0% | |
| TATAACTGAAAAACCAGTGA+TGG | + | Chr7:84208305-84208324 | None:intergenic | 30.0% | |
| TATGAATAGATCCACAAGTA+AGG | + | Chr7:84208332-84208351 | None:intergenic | 30.0% | |
| ! | TTAGATCATGATGATGATGA+TGG | - | Chr7:84208552-84208571 | MsG0780040914.01.T01:intron | 30.0% |
| ! | TTTTGTGGAGACATACAAAA+GGG | + | Chr7:84208876-84208895 | None:intergenic | 30.0% |
| ! | TTTTTGTGGAGACATACAAA+AGG | + | Chr7:84208877-84208896 | None:intergenic | 30.0% |
| !!! | TAATTTTTTACCTCCATCAC+TGG | - | Chr7:84208289-84208308 | MsG0780040914.01.T01:intron | 30.0% |
| !!! | TTCATCTTCTTTTTTGAGAC+TGG | + | Chr7:84209360-84209379 | None:intergenic | 30.0% |
| AGAAAATCGGATCTAAGAAG+AGG | + | Chr7:84208135-84208154 | None:intergenic | 35.0% | |
| AGTTATATACGCCTTACTTG+TGG | - | Chr7:84208318-84208337 | MsG0780040914.01.T01:intron | 35.0% | |
| ATTGTATTGTACACGCGTTA+AGG | - | Chr7:84208777-84208796 | MsG0780040914.01.T01:intron | 35.0% | |
| CGTAGAATATGAGAAAGGTA+AGG | + | Chr7:84208228-84208247 | None:intergenic | 35.0% | |
| TGCCATCAATTTGTGTTGAA+TGG | - | Chr7:84208656-84208675 | MsG0780040914.01.T01:intron | 35.0% | |
| TTGATTGTTCTCCTGGTTAT+TGG | - | Chr7:84209252-84209271 | MsG0780040914.01.T01:intron | 35.0% | |
| ! | AAGTAGAATCTCTGATTTGC+AGG | + | Chr7:84208944-84208963 | None:intergenic | 35.0% |
| ! | AGTAGAATCTCTGATTTGCA+GGG | + | Chr7:84208943-84208962 | None:intergenic | 35.0% |
| ! | CCTTTGTTTCAAAGAATCTC+TGG | - | Chr7:84208991-84209010 | MsG0780040914.01.T01:intron | 35.0% |
| ! | TCAACACAAATTGATGGCAT+TGG | + | Chr7:84208655-84208674 | None:intergenic | 35.0% |
| ! | TGAAAGTATGAACGAGCAAA+GGG | + | Chr7:84208251-84208270 | None:intergenic | 35.0% |
| ! | TTGAAAGTATGAACGAGCAA+AGG | + | Chr7:84208252-84208271 | None:intergenic | 35.0% |
| ! | TTGCTGTTGACATTTCTCAT+TGG | - | Chr7:84209279-84209298 | MsG0780040914.01.T01:intron | 35.0% |
| ! | TTTAGAATGCTGGATCTCAA+GGG | - | Chr7:84209217-84209236 | MsG0780040914.01.T01:intron | 35.0% |
| ! | TTTGAAACAAAGGAGAGAAG+TGG | + | Chr7:84208984-84209003 | None:intergenic | 35.0% |
| ! | TTTGTGTTGAATGGTTTTCC+AGG | - | Chr7:84208665-84208684 | MsG0780040914.01.T01:intron | 35.0% |
| !! | CCAGAGATTCTTTGAAACAA+AGG | + | Chr7:84208994-84209013 | None:intergenic | 35.0% |
| !!! | AGTGCTTTTTTTGTTGCTCT+TGG | - | Chr7:84209187-84209206 | MsG0780040914.01.T01:intron | 35.0% |
| !!! | GTGCTTTTTTTGTTGCTCTT+GGG | - | Chr7:84209188-84209207 | MsG0780040914.01.T01:intron | 35.0% |
| !!! | TGCTTTTTTTGTTGCTCTTG+GGG | - | Chr7:84209189-84209208 | MsG0780040914.01.T01:intron | 35.0% |
| AACTGAAAAACCAGTGATGG+AGG | + | Chr7:84208302-84208321 | None:intergenic | 40.0% | |
| AGAAGAGGAGAGAAGAATAC+CGG | + | Chr7:84208120-84208139 | None:intergenic | 40.0% | |
| ATTGTTCTCCTGGTTATTGG+TGG | - | Chr7:84209255-84209274 | MsG0780040914.01.T01:intron | 40.0% | |
| CATACATGGATGATTGTGAG+TGG | - | Chr7:84209084-84209103 | MsG0780040914.01.T01:intron | 40.0% | |
| GCTTTACGTTTATGCACAGA+AGG | - | Chr7:84209311-84209330 | MsG0780040914.01.T01:intron | 40.0% | |
| GGGACTGTGAATCATAAATC+AGG | + | Chr7:84208856-84208875 | None:intergenic | 40.0% | |
| TTGTTCTCCTGGTTATTGGT+GGG | - | Chr7:84209256-84209275 | MsG0780040914.01.T01:intron | 40.0% | |
| ! | AAGGGCGTAGAATATGAGAA+AGG | + | Chr7:84208233-84208252 | None:intergenic | 40.0% |
| ! | ATGATGGTGATACTGCAGAA+TGG | - | Chr7:84208568-84208587 | MsG0780040914.01.T01:intron | 40.0% |
| ! | GTTTAGAATGCTGGATCTCA+AGG | - | Chr7:84209216-84209235 | MsG0780040914.01.T01:intron | 40.0% |
| ! | TGGGGAAATGTTTAGAATGC+TGG | - | Chr7:84209207-84209226 | MsG0780040914.01.T01:intron | 40.0% |
| !!! | ACTGGCTTCTTTTTTCTAGG+AGG | + | Chr7:84209342-84209361 | None:intergenic | 40.0% |
| !!! | CTGGCTTCTTTTTTCTAGGA+GGG | + | Chr7:84209341-84209360 | None:intergenic | 40.0% |
| !!! | GAGACTGGCTTCTTTTTTCT+AGG | + | Chr7:84209345-84209364 | None:intergenic | 40.0% |
| AAAAAGGAGAGGCTGAAGCA+AGG | - | Chr7:84209378-84209397 | MsG0780040914.01.T01:intron | 45.0% | |
| AAGAGGAGAGAAGAATACCG+GGG | + | Chr7:84208118-84208137 | None:intergenic | 45.0% | |
| ACATGGATGATTGTGAGTGG+TGG | - | Chr7:84209087-84209106 | MsG0780040914.01.T01:intron | 45.0% | |
| GAAGAGGAGAGAAGAATACC+GGG | + | Chr7:84208119-84208138 | None:intergenic | 45.0% | |
| GAGAAAGGTAAGGCATGCAA+GGG | + | Chr7:84208218-84208237 | None:intergenic | 45.0% | |
| TGAGAAAGGTAAGGCATGCA+AGG | + | Chr7:84208219-84208238 | None:intergenic | 45.0% | |
| ACAGCAACCCACCAATAACC+AGG | + | Chr7:84209266-84209285 | None:intergenic | 50.0% | |
| ACCAGGAGAACAATCAAGCC+TGG | + | Chr7:84209249-84209268 | None:intergenic | 50.0% | |
| AGAGGAGAGAAGAATACCGG+GGG | + | Chr7:84208117-84208136 | None:intergenic | 50.0% | |
| CCAGGAGAACAATCAAGCCT+GGG | + | Chr7:84209248-84209267 | None:intergenic | 50.0% | |
| GAATACCGGGGGGACTTTAT+CGG | + | Chr7:84208106-84208125 | None:intergenic | 50.0% | |
| AAGCAAGGAGTCTCTGCACC+TGG | - | Chr7:84209393-84209412 | MsG0780040914.01.T01:intron | 55.0% | |
| CCCAGGCTTGATTGTTCTCC+TGG | - | Chr7:84209245-84209264 | MsG0780040914.01.T01:intron | 55.0% | |
| GAGGAGAGAAGAATACCGGG+GGG | + | Chr7:84208116-84208135 | None:intergenic | 55.0% | |
| GGATCTCAAGGGTTCAACCC+AGG | - | Chr7:84209228-84209247 | MsG0780040914.01.T01:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 84208099 | 84209422 | 84208099 | ID=MsG0780040914.01;Name=MsG0780040914.01 |
| Chr7 | mRNA | 84208099 | 84209422 | 84208099 | ID=MsG0780040914.01.T01;Parent=MsG0780040914.01;Name=MsG0780040914.01.T01;_AED=0.43;_eAED=0.44;_QI=0|0|0|1|0|0|2|0|73 |
| Chr7 | exon | 84208099 | 84208299 | 84208099 | ID=MsG0780040914.01.T01:exon:40685;Parent=MsG0780040914.01.T01 |
| Chr7 | exon | 84209402 | 84209422 | 84209402 | ID=MsG0780040914.01.T01:exon:40684;Parent=MsG0780040914.01.T01 |
| Chr7 | CDS | 84209402 | 84209422 | 84209402 | ID=MsG0780040914.01.T01:cds;Parent=MsG0780040914.01.T01 |
| Chr7 | CDS | 84208099 | 84208299 | 84208099 | ID=MsG0780040914.01.T01:cds;Parent=MsG0780040914.01.T01 |
| Chr7 | mRNA | 84208143 | 84208214 | 84208143 | ID=MsG0780040914.01.T02;Parent=MsG0780040914.01;Name=MsG0780040914.01.T02;_AED=0.48;_eAED=0.48;_QI=0|-1|0|1|-1|0|1|0|23 |
| Chr7 | exon | 84208143 | 84208214 | 84208143 | ID=MsG0780040914.01.T02:exon:40686;Parent=MsG0780040914.01.T02 |
| Chr7 | CDS | 84208143 | 84208214 | 84208143 | ID=MsG0780040914.01.T02:cds;Parent=MsG0780040914.01.T02 |
| Gene Sequence |
| Protein sequence |
