AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008349.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008349.01.T01 MTR_2g040830 82.507 343 43 5 1 340 1 329 0.0 551
MsG0280008349.01.T01 MTR_2g040690 79.710 345 51 6 1 340 1 331 0.0 530
MsG0280008349.01.T01 MTR_2g040740 79.300 343 53 7 1 340 1 328 0.0 511
MsG0280008349.01.T01 MTR_2g040650 79.765 341 52 6 1 340 1 325 7.32e-179 498
MsG0280008349.01.T01 MTR_5g043550 50.968 310 125 8 10 311 4 294 7.21e-95 284
MsG0280008349.01.T01 MTR_1g099310 49.684 316 134 8 1 311 1 296 1.34e-94 283
MsG0280008349.01.T01 MTR_0027s0260 47.619 315 139 8 5 311 2 298 2.00e-92 278
MsG0280008349.01.T01 MTR_8g055940 45.426 317 147 8 1 311 1 297 2.14e-88 268
MsG0280008349.01.T01 MTR_1g099290 48.185 303 135 7 11 308 10 295 3.40e-86 271
MsG0280008349.01.T01 MTR_2g040880 83.673 147 23 1 194 340 1 146 1.80e-85 254
MsG0280008349.01.T01 MTR_1g099320 51.064 282 116 10 23 298 20 285 3.96e-84 256
MsG0280008349.01.T01 MTR_7g116850 45.455 308 145 8 11 311 35 326 1.89e-78 243
MsG0280008349.01.T01 MTR_8g467650 46.154 312 141 10 8 311 6 298 3.22e-78 241
MsG0280008349.01.T01 MTR_7g116350 45.130 308 134 9 11 313 9 286 7.68e-77 251
MsG0280008349.01.T01 MTR_1g099350 45.878 279 127 7 24 297 19 278 2.17e-76 236
MsG0280008349.01.T01 MTR_2g102020 44.737 304 139 9 7 297 13 300 3.74e-75 235
MsG0280008349.01.T01 MTR_6g023340 44.595 296 140 10 24 311 23 302 2.29e-73 229
MsG0280008349.01.T01 MTR_2g040870 70.253 158 43 2 17 171 13 169 6.01e-72 221
MsG0280008349.01.T01 MTR_2g040900 59.355 155 61 2 187 340 17 170 3.88e-57 183
MsG0280008349.01.T01 MTR_2g040890 53.191 188 79 5 1 182 1 185 2.12e-56 182
MsG0280008349.01.T01 MTR_2g040850 53.595 153 57 4 1 142 1 150 2.90e-42 147
MsG0280008349.01.T01 MTR_2g040850 50.794 126 53 4 209 331 122 241 1.46e-26 105
MsG0280008349.01.T01 MTR_4g077310 42.105 95 49 3 215 309 3 91 6.59e-16 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008349.01.T01 AT5G24090 44.268 314 154 8 3 311 5 302 1.78e-85 260

Find 88 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGAAATTTGAATAAAAT+TGG 0.164688 2:-29798222 MsG0280008349.01.T01:three_prime_UTR
TTGGCTTTCCTCAATGTCTT+TGG 0.217357 2:-29801273 MsG0280008349.01.T01:CDS
ATAAAACACTGTCAAGAAAA+AGG 0.225882 2:-29801171 MsG0280008349.01.T01:CDS
CCTATCAGAGACCTTATAAA+AGG 0.236067 2:-29801517 MsG0280008349.01.T01:five_prime_UTR
CCCATGAAAACGGTATTATT+TGG 0.251275 2:+29798724 None:intergenic
AACTTTCTTAGTGGTCAATT+TGG 0.254606 2:-29801063 MsG0280008349.01.T01:CDS
ATAGTTGGAAGTTGGTTTAA+TGG 0.284816 2:+29798624 None:intergenic
ACCAAATGATCTCATTTCTA+AGG 0.290925 2:-29798656 MsG0280008349.01.T01:CDS
TTACTTTCCCTCAGAGCATT+AGG 0.302991 2:-29801138 MsG0280008349.01.T01:CDS
AAGGAGGTACAAATCTTTAC+TGG 0.304361 2:-29800996 MsG0280008349.01.T01:CDS
ATTAAACCAACTTCCAACTA+TGG 0.306183 2:-29798622 MsG0280008349.01.T01:CDS
GTTAAAATCAACACCATCTA+AGG 0.310593 2:+29801023 None:intergenic
ATGGTGGCATTGCCGTCTAC+TGG 0.329897 2:-29801362 MsG0280008349.01.T01:CDS
CTTGGAAGTGTTACCTTAGA+TGG 0.333989 2:-29801036 MsG0280008349.01.T01:CDS
CTCTATACTAACTTTCTTAG+TGG 0.345832 2:-29801072 MsG0280008349.01.T01:CDS
ACTATATATATGTATGAGTA+TGG 0.348380 2:-29798415 MsG0280008349.01.T01:three_prime_UTR
AGCACAAAATGGATACAAAA+AGG 0.354708 2:-29801449 MsG0280008349.01.T01:exon
TAATTTCGAGATTGTACTCT+TGG 0.374143 2:-29801292 MsG0280008349.01.T01:CDS
CTTGACAAAGCTATCAAAAC+TGG 0.380969 2:-29798865 MsG0280008349.01.T01:CDS
ACCTTAGAAATGAGATCATT+TGG 0.385560 2:+29798655 None:intergenic
CTATGGAGGAATTATGCTTT+GGG 0.391332 2:-29798605 MsG0280008349.01.T01:CDS
GTAATCTGGCATATAACATT+GGG 0.392231 2:+29798891 None:intergenic
GCGTATAATATGATTTAATT+CGG 0.393756 2:+29798445 None:intergenic
ACTATGGAGGAATTATGCTT+TGG 0.402308 2:-29798606 MsG0280008349.01.T01:CDS
TGGTGGCATTGCCGTCTACT+GGG 0.405455 2:-29801361 MsG0280008349.01.T01:CDS
GCTTTCCTCAATGTCTTTGG+AGG 0.413044 2:-29801270 MsG0280008349.01.T01:CDS
TGATTTGCAAAGTTCAAACT+TGG 0.417925 2:+29801237 None:intergenic
TAGCTTCTTCTGGTGAGCTA+AGG 0.426254 2:+29801112 None:intergenic
TGATTACAGCTATCAGATAA+AGG 0.427044 2:-29798557 MsG0280008349.01.T01:CDS
CTACATTGCTCTTAAAATCA+TGG 0.429928 2:-29798771 MsG0280008349.01.T01:CDS
TTCCTCAATGTCTTTGGAGG+AGG 0.446588 2:-29801267 MsG0280008349.01.T01:CDS
AGCTTCTTCTGGTGAGCTAA+GGG 0.448193 2:+29801113 None:intergenic
TGGGATAGATTTCATGATGT+TGG 0.451538 2:-29798586 MsG0280008349.01.T01:CDS
CATCGTAAAGTTGGTCGTAC+AGG 0.452145 2:+29798373 None:intergenic
CAAGTTTCTGAGGCAATAGC+TGG 0.454724 2:-29798499 MsG0280008349.01.T01:CDS
ACAATCTAAGACAACAAAAC+AGG 0.458920 2:-29800951 MsG0280008349.01.T01:intron
AAGCATAATTCCTCCATAGT+TGG 0.460777 2:+29798609 None:intergenic
TCTTAAAATCATGGAATGCT+TGG 0.464778 2:-29798762 MsG0280008349.01.T01:CDS
TTTCTTAACCATCGTAAAGT+TGG 0.473433 2:+29798364 None:intergenic
CTATCAGAGACCTTATAAAA+GGG 0.478413 2:-29801516 MsG0280008349.01.T01:five_prime_UTR
TCCCAAGGTTTACATGAAAA+CGG 0.482053 2:+29798282 None:intergenic
ATTCCTCCATAGTTGGAAGT+TGG 0.484513 2:+29798616 None:intergenic
TTTGTTGTCTTAGATTGTCA+AGG 0.485852 2:+29800956 None:intergenic
GCTTTGTCAAGGTAGTAATC+TGG 0.487955 2:+29798877 None:intergenic
TTTACTGGGATGACCTTGCT+AGG 0.501225 2:-29800981 MsG0280008349.01.T01:CDS
GTCTTCTCTTATGTATGTAC+TGG 0.503093 2:-29798251 MsG0280008349.01.T01:three_prime_UTR
TTGGAAGTTGGTTTAATGGA+AGG 0.522478 2:+29798628 None:intergenic
AGTAATCTGGCATATAACAT+TGG 0.524590 2:+29798890 None:intergenic
GGAGCTGCATCAGGTGATGC+TGG 0.526731 2:+29798697 None:intergenic
CACTAAGAAAGTTAGTATAG+AGG 0.529347 2:+29801073 None:intergenic
TGCTGGTAGTCCCATGAAAA+CGG 0.529775 2:+29798714 None:intergenic
CCACCACTAGGAGCTGCATC+AGG 0.548590 2:+29798688 None:intergenic
GGCAATAGCTGGATGTATCT+CGG 0.551848 2:-29798488 MsG0280008349.01.T01:CDS
TATGATTTAATTCGGAAACA+TGG 0.564143 2:+29798453 None:intergenic
GATTTGCAAAGTTCAAACTT+GGG 0.564533 2:+29801238 None:intergenic
AGTGGTCAATTTGGTCCACT+TGG 0.566066 2:-29801054 MsG0280008349.01.T01:CDS
AAGGGCTCCTAATGCTCTGA+GGG 0.572834 2:+29801131 None:intergenic
TTGAACTTTGCAAATCATTG+TGG 0.576615 2:-29801231 MsG0280008349.01.T01:CDS
AGAAGACGCTTTGATTCCCA+AGG 0.579115 2:+29798267 None:intergenic
TTCCTCCTCCAAAGACATTG+AGG 0.584718 2:+29801265 None:intergenic
TGATGATGCTTTGATAGTGA+AGG 0.585896 2:+29801389 None:intergenic
TTACTGGGATGACCTTGCTA+GGG 0.587273 2:-29800980 MsG0280008349.01.T01:CDS
AGGAGGTACAAATCTTTACT+GGG 0.587554 2:-29800995 MsG0280008349.01.T01:CDS
GAGGGAATCAAAGTGTAACT+AGG 0.588909 2:+29798304 None:intergenic
TGGGGCCAAAACGTAAAAGA+AGG 0.591748 2:-29801342 MsG0280008349.01.T01:CDS
TCGGACACACGTCTAATTCG+AGG 0.593765 2:-29801630 MsG0280008349.01.T01:five_prime_UTR
GATTGTCAAGGTCCCTAGCA+AGG 0.595500 2:+29800968 None:intergenic
ATATTGTCAAGACTAACAAA+AGG 0.600315 2:+29801415 None:intergenic
TAACTTAGCATCTATAAGCA+AGG 0.603833 2:+29801602 None:intergenic
TTAGAAATGAGATCATTTGG+TGG 0.607316 2:+29798658 None:intergenic
ATCAAAGCATCATCAAGTGA+TGG 0.610130 2:-29801381 MsG0280008349.01.T01:CDS
TTGACATCAACATGTGACAC+TGG 0.615620 2:-29801315 MsG0280008349.01.T01:CDS
AAGGTTTACATGAAAACGGA+GGG 0.629978 2:+29798286 None:intergenic
GATGATGCTTTGATAGTGAA+GGG 0.636457 2:+29801390 None:intergenic
AAACCAACTTCCAACTATGG+AGG 0.642148 2:-29798619 MsG0280008349.01.T01:CDS
CTGTACGACCAACTTTACGA+TGG 0.643200 2:-29798372 MsG0280008349.01.T01:three_prime_UTR
AAAGCATCATCAAGTGATGG+TGG 0.646449 2:-29801378 MsG0280008349.01.T01:CDS
TCACCTGATGCAGCTCCTAG+TGG 0.649095 2:-29798691 MsG0280008349.01.T01:CDS
TAAGGGCTCCTAATGCTCTG+AGG 0.652053 2:+29801130 None:intergenic
CCTGATGCAGCTCCTAGTGG+TGG 0.652514 2:-29798688 MsG0280008349.01.T01:CDS
GGTGGCATTGCCGTCTACTG+GGG 0.654303 2:-29801360 MsG0280008349.01.T01:CDS
AGTGTCACATGTTGATGTCA+AGG 0.656681 2:+29801317 None:intergenic
CAAGGTTTACATGAAAACGG+AGG 0.671734 2:+29798285 None:intergenic
GACACACGTCTAATTCGAGG+AGG 0.688209 2:-29801627 MsG0280008349.01.T01:five_prime_UTR
GGTGGTATATAACCACCACT+AGG 0.690618 2:+29798676 None:intergenic
TAATCTGGCATATAACATTG+GGG 0.697221 2:+29798892 None:intergenic
ACACACGTCTAATTCGAGGA+GGG 0.714268 2:-29801626 MsG0280008349.01.T01:five_prime_UTR
TCTAAGGTAACACTTCCAAG+TGG 0.714737 2:+29801039 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATGAGAAAATATAATAT+AGG - Chr2:29799442-29799461 MsG0280008349.01.T01:intron 10.0%
!! TAATAAATATTTACCATTTA+TGG - Chr2:29800556-29800575 MsG0280008349.01.T01:intron 10.0%
!!! TATTTTTCTTTGAAAAAATA+TGG + Chr2:29799335-29799354 None:intergenic 10.0%
!! ATACTTATGTTACAAATATT+TGG + Chr2:29800010-29800029 None:intergenic 15.0%
!! TACTTATGTTACAAATATTT+GGG + Chr2:29800009-29800028 None:intergenic 15.0%
!!! ATGAAATGATGTTTTTTTTA+TGG + Chr2:29800762-29800781 None:intergenic 15.0%
!!! CTTTGAAATTTGAATAAAAT+TGG - Chr2:29801614-29801633 MsG0280008349.01.T01:five_prime_UTR 15.0%
!!! TATCCATTCTAAAATTATTA+TGG + Chr2:29799765-29799784 None:intergenic 15.0%
!!! TATTGAGTAACTTTTTTTTT+AGG + Chr2:29798272-29798291 None:intergenic 15.0%
!!! TGAAATGATGTTTTTTTTAT+GGG + Chr2:29800761-29800780 None:intergenic 15.0%
!!! TTAATTTATTGATTTATGAC+AGG + Chr2:29800679-29800698 None:intergenic 15.0%
!!! TTTTCAAAGAAAAATATGTA+TGG - Chr2:29799339-29799358 MsG0280008349.01.T01:intron 15.0%
!!! TTTTTTTTATCATATTGACA+TGG + Chr2:29801037-29801056 None:intergenic 15.0%
!! AAAAAAAAAAAATCTCTTGC+AGG - Chr2:29800900-29800919 MsG0280008349.01.T01:intron 20.0%
!! AAAAAATATGGTTGTTCATT+AGG + Chr2:29799323-29799342 None:intergenic 20.0%
!! AAATATAATGTGAGTATAAG+AGG - Chr2:29799390-29799409 MsG0280008349.01.T01:intron 20.0%
!! ACTATATATATGTATGAGTA+TGG - Chr2:29801421-29801440 MsG0280008349.01.T01:CDS 20.0%
!! AGCATAATGCTATAATATAT+TGG - Chr2:29800611-29800630 MsG0280008349.01.T01:intron 20.0%
!! AGTATTATATGAACTAGTAT+TGG - Chr2:29799835-29799854 MsG0280008349.01.T01:intron 20.0%
!! ATATTCACATTATACACTTT+AGG + Chr2:29799427-29799446 None:intergenic 20.0%
!! ATCTTTAAATTAAAGTGTAC+CGG - Chr2:29800649-29800668 MsG0280008349.01.T01:intron 20.0%
!! GCATAATGCTATAATATATT+GGG - Chr2:29800612-29800631 MsG0280008349.01.T01:intron 20.0%
!! GCGTATAATATGATTTAATT+CGG + Chr2:29801394-29801413 None:intergenic 20.0%
!! TAAAGAAATATATCATGACA+TGG + Chr2:29799179-29799198 None:intergenic 20.0%
!! TAGAATGGATATAGTAAAAA+AGG - Chr2:29799774-29799793 MsG0280008349.01.T01:intron 20.0%
!!! AAAAGGTTGATTTGTTAATT+AGG + Chr2:29800858-29800877 None:intergenic 20.0%
!!! AAAGGTTGATTTGTTAATTA+GGG + Chr2:29800857-29800876 None:intergenic 20.0%
!!! ACGGAAAATACTTTTTTTTT+AGG + Chr2:29800045-29800064 None:intergenic 20.0%
!!! ACTTTTTTTTTAGGGAAATA+CGG + Chr2:29800036-29800055 None:intergenic 20.0%
!!! AGATTTTTTTTTTTTGAGAG+AGG + Chr2:29800895-29800914 None:intergenic 20.0%
!!! CGGAAAATACTTTTTTTTTA+GGG + Chr2:29800044-29800063 None:intergenic 20.0%
!!! TGCTTACTTTTATTTATGTT+TGG + Chr2:29799604-29799623 None:intergenic 20.0%
!!! TTTAACTTAAGAAAGTAGAA+TGG - Chr2:29800201-29800220 MsG0280008349.01.T01:intron 20.0%
!!! TTTTTTATAAAATTGGGATG+TGG + Chr2:29799060-29799079 None:intergenic 20.0%
! ATAAAACACTGTCAAGAAAA+AGG - Chr2:29798665-29798684 MsG0280008349.01.T01:CDS 25.0%
! ATATTGTCAAGACTAACAAA+AGG + Chr2:29798424-29798443 None:intergenic 25.0%
! GTTAAGAAAGAAAAATGATC+AGG - Chr2:29801486-29801505 MsG0280008349.01.T01:five_prime_UTR 25.0%
! TAAAACACTGTCAAGAAAAA+GGG - Chr2:29798666-29798685 MsG0280008349.01.T01:CDS 25.0%
! TAATATATTGGGAGTTTCTA+CGG - Chr2:29800623-29800642 MsG0280008349.01.T01:intron 25.0%
! TATGATTTAATTCGGAAACA+TGG + Chr2:29801386-29801405 None:intergenic 25.0%
! TGCAAATAAACGGATATAAT+TGG - Chr2:29800375-29800394 MsG0280008349.01.T01:intron 25.0%
! TTAGGATGTTAAATAAAACG+TGG + Chr2:29799305-29799324 None:intergenic 25.0%
!! CAAAATTTTTCACTTGTCTT+CGG + Chr2:29800244-29800263 None:intergenic 25.0%
!! GTTGAAATTTTACAATCTCA+GGG - Chr2:29800397-29800416 MsG0280008349.01.T01:intron 25.0%
!! TAAACACAAAAAGCACAAAA+TGG - Chr2:29798376-29798395 MsG0280008349.01.T01:three_prime_UTR 25.0%
!! TATGCTAACTTGAGTTTTTA+AGG + Chr2:29800597-29800616 None:intergenic 25.0%
!! TTATATGAACTAGTATTGGA+TGG - Chr2:29799839-29799858 MsG0280008349.01.T01:intron 25.0%
!! TTGAAATTTTACAATCTCAG+GGG - Chr2:29800398-29800417 MsG0280008349.01.T01:intron 25.0%
!! TTTTATCATATTGACATGGA+GGG + Chr2:29801033-29801052 None:intergenic 25.0%
!! TTTTTATCATATTGACATGG+AGG + Chr2:29801034-29801053 None:intergenic 25.0%
!!! GCTCCATAATAATTTTAGAA+TGG - Chr2:29799759-29799778 MsG0280008349.01.T01:intron 25.0%
!!! TTCTTGACAGTGTTTTATTT+CGG + Chr2:29798663-29798682 None:intergenic 25.0%
AACTTTCTTAGTGGTCAATT+TGG - Chr2:29798773-29798792 MsG0280008349.01.T01:CDS 30.0%
ACCAAATGATCTCATTTCTA+AGG - Chr2:29801180-29801199 MsG0280008349.01.T01:CDS 30.0%
ACCTTAGAAATGAGATCATT+TGG + Chr2:29801184-29801203 None:intergenic 30.0%
AGCACAAAATGGATACAAAA+AGG - Chr2:29798387-29798406 MsG0280008349.01.T01:three_prime_UTR 30.0%
AGTAATCTGGCATATAACAT+TGG + Chr2:29800949-29800968 None:intergenic 30.0%
ATTAAACCAACTTCCAACTA+TGG - Chr2:29801214-29801233 MsG0280008349.01.T01:CDS 30.0%
ATTGGATGGACACAATATAA+GGG - Chr2:29799853-29799872 MsG0280008349.01.T01:intron 30.0%
CACTAAGAAAGTTAGTATAG+AGG + Chr2:29798766-29798785 None:intergenic 30.0%
CACTTCAAATTAAGTTCTCA+GGG + Chr2:29800142-29800161 None:intergenic 30.0%
CATGTTAAGGATTCCATAAA+TGG + Chr2:29800572-29800591 None:intergenic 30.0%
CCCAGTTTGCATATTTAATA+CGG + Chr2:29800064-29800083 None:intergenic 30.0%
CCGTATTAAATATGCAAACT+GGG - Chr2:29800061-29800080 MsG0280008349.01.T01:intron 30.0%
CTACATTGCTCTTAAAATCA+TGG - Chr2:29801065-29801084 MsG0280008349.01.T01:CDS 30.0%
CTATCAGAGACCTTATAAAA+GGG - Chr2:29798320-29798339 MsG0280008349.01.T01:three_prime_UTR 30.0%
CTCTATACTAACTTTCTTAG+TGG - Chr2:29798764-29798783 MsG0280008349.01.T01:CDS 30.0%
GATTTGCAAAGTTCAAACTT+GGG + Chr2:29798601-29798620 None:intergenic 30.0%
GGTGCAAAATAAATTTCTCA+GGG - Chr2:29800344-29800363 MsG0280008349.01.T01:intron 30.0%
GTAATCTGGCATATAACATT+GGG + Chr2:29800948-29800967 None:intergenic 30.0%
GTTAAAATCAACACCATCTA+AGG + Chr2:29798816-29798835 None:intergenic 30.0%
TAACTTAGCATCTATAAGCA+AGG + Chr2:29798237-29798256 None:intergenic 30.0%
TAATCTGGCATATAACATTG+GGG + Chr2:29800947-29800966 None:intergenic 30.0%
TAATTTCGAGATTGTACTCT+TGG - Chr2:29798544-29798563 MsG0280008349.01.T01:CDS 30.0%
TATTGGATGGACACAATATA+AGG - Chr2:29799852-29799871 MsG0280008349.01.T01:intron 30.0%
TCACTTCAAATTAAGTTCTC+AGG + Chr2:29800143-29800162 None:intergenic 30.0%
TCCGTATTAAATATGCAAAC+TGG - Chr2:29800060-29800079 MsG0280008349.01.T01:intron 30.0%
TCTTAAAATCATGGAATGCT+TGG - Chr2:29801074-29801093 MsG0280008349.01.T01:CDS 30.0%
TGATTACAGCTATCAGATAA+AGG - Chr2:29801279-29801298 MsG0280008349.01.T01:CDS 30.0%
TGGTGCAAAATAAATTTCTC+AGG - Chr2:29800343-29800362 MsG0280008349.01.T01:intron 30.0%
TTAGAAATGAGATCATTTGG+TGG + Chr2:29801181-29801200 None:intergenic 30.0%
TTGAACTTTGCAAATCATTG+TGG - Chr2:29798605-29798624 MsG0280008349.01.T01:CDS 30.0%
TTTCTTAACCATCGTAAAGT+TGG + Chr2:29801475-29801494 None:intergenic 30.0%
! ACAATCTAAGACAACAAAAC+AGG - Chr2:29798885-29798904 MsG0280008349.01.T01:CDS 30.0%
! ACCAAATAATACCGTTTTCA+TGG - Chr2:29801111-29801130 MsG0280008349.01.T01:CDS 30.0%
! ATAGTTGGAAGTTGGTTTAA+TGG + Chr2:29801215-29801234 None:intergenic 30.0%
! ATTGAGCAAACCCTTTTATA+AGG + Chr2:29798333-29798352 None:intergenic 30.0%
! CCAAATAATACCGTTTTCAT+GGG - Chr2:29801112-29801131 MsG0280008349.01.T01:CDS 30.0%
! GGTTGAAATTTTACAATCTC+AGG - Chr2:29800396-29800415 MsG0280008349.01.T01:intron 30.0%
! TGAAATTTTACAATCTCAGG+GGG - Chr2:29800399-29800418 MsG0280008349.01.T01:intron 30.0%
! TGATTTGCAAAGTTCAAACT+TGG + Chr2:29798602-29798621 None:intergenic 30.0%
! TTTGTTGTCTTAGATTGTCA+AGG + Chr2:29798883-29798902 None:intergenic 30.0%
!! GTTGATTTTAACATTGAAGG+AGG - Chr2:29798824-29798843 MsG0280008349.01.T01:CDS 30.0%
!! TATAGTTTCAAGTTGTACAG+CGG + Chr2:29798969-29798988 None:intergenic 30.0%
!!! AGTTTTTAAGGCACATGTTA+AGG + Chr2:29800585-29800604 None:intergenic 30.0%
!!! GGTGTTGATTTTAACATTGA+AGG - Chr2:29798821-29798840 MsG0280008349.01.T01:CDS 30.0%
!!! TTTTAAGACACAAGTTTCTG+AGG - Chr2:29801327-29801346 MsG0280008349.01.T01:CDS 30.0%
AAATATGCAAACTGGGAACT+TGG - Chr2:29800068-29800087 MsG0280008349.01.T01:intron 35.0%
AAGCATAATTCCTCCATAGT+TGG + Chr2:29801230-29801249 None:intergenic 35.0%
AAGGTTTACATGAAAACGGA+GGG + Chr2:29801553-29801572 None:intergenic 35.0%
ACATGTTAAGGAACTTAAGG+TGG - Chr2:29800473-29800492 MsG0280008349.01.T01:intron 35.0%
ACTATGGAGGAATTATGCTT+TGG - Chr2:29801230-29801249 MsG0280008349.01.T01:CDS 35.0%
ATGACATGGAGATATCAGAA+AGG + Chr2:29799165-29799184 None:intergenic 35.0%
ATGATCAAGACTTTAGCACA+TGG + Chr2:29800094-29800113 None:intergenic 35.0%
CCCATGAAAACGGTATTATT+TGG + Chr2:29801115-29801134 None:intergenic 35.0%
CCTATCAGAGACCTTATAAA+AGG - Chr2:29798319-29798338 MsG0280008349.01.T01:three_prime_UTR 35.0%
CTATGGAGGAATTATGCTTT+GGG - Chr2:29801231-29801250 MsG0280008349.01.T01:CDS 35.0%
CTTATTCTTTACGCACACAA+AGG + Chr2:29799227-29799246 None:intergenic 35.0%
CTTGACAAAGCTATCAAAAC+TGG - Chr2:29800971-29800990 MsG0280008349.01.T01:CDS 35.0%
CTTTGTGTGCGTAAAGAATA+AGG - Chr2:29799225-29799244 MsG0280008349.01.T01:intron 35.0%
GAAGGTGAGATAAGAATAAC+TGG - Chr2:29800287-29800306 MsG0280008349.01.T01:intron 35.0%
GTCTTCTCTTATGTATGTAC+TGG - Chr2:29801585-29801604 MsG0280008349.01.T01:five_prime_UTR 35.0%
GTTAAATAAAACGTGGTGTC+TGG + Chr2:29799298-29799317 None:intergenic 35.0%
TCCCAAGGTTTACATGAAAA+CGG + Chr2:29801557-29801576 None:intergenic 35.0%
TGGGATAGATTTCATGATGT+TGG - Chr2:29801250-29801269 MsG0280008349.01.T01:CDS 35.0%
TTGATTTATGACAGGTGTAC+CGG + Chr2:29800671-29800690 None:intergenic 35.0%
! AAGATGAAGAACCCTGTTTT+GGG + Chr2:29799110-29799129 None:intergenic 35.0%
! AAGGAGGTACAAATCTTTAC+TGG - Chr2:29798840-29798859 MsG0280008349.01.T01:CDS 35.0%
! AGGAGGTACAAATCTTTACT+GGG - Chr2:29798841-29798860 MsG0280008349.01.T01:CDS 35.0%
! ATCAAAGCATCATCAAGTGA+TGG - Chr2:29798455-29798474 MsG0280008349.01.T01:exon 35.0%
! ATCAACCTTTTATCTCTTGC+AGG - Chr2:29800867-29800886 MsG0280008349.01.T01:intron 35.0%
! CCTTTTATAAGGTCTCTGAT+AGG + Chr2:29798322-29798341 None:intergenic 35.0%
! TCCGTTTTCATGTAAACCTT+GGG - Chr2:29801553-29801572 MsG0280008349.01.T01:five_prime_UTR 35.0%
! TTGGAAGTTGGTTTAATGGA+AGG + Chr2:29801211-29801230 None:intergenic 35.0%
!! GATGATGCTTTGATAGTGAA+GGG + Chr2:29798449-29798468 None:intergenic 35.0%
!! TGATGATGCTTTGATAGTGA+AGG + Chr2:29798450-29798469 None:intergenic 35.0%
!!! CAGTTTTGATAGCTTTGTCA+AGG + Chr2:29800973-29800992 None:intergenic 35.0%
!!! GAAACAGTTTTAGCTTCTTC+TGG + Chr2:29798737-29798756 None:intergenic 35.0%
AAACCAACTTCCAACTATGG+AGG - Chr2:29801217-29801236 MsG0280008349.01.T01:CDS 40.0%
AGGTACCTGCAAGAGATAAA+AGG + Chr2:29800875-29800894 None:intergenic 40.0%
AGTGTCACATGTTGATGTCA+AGG + Chr2:29798522-29798541 None:intergenic 40.0%
ATTCCTCCATAGTTGGAAGT+TGG + Chr2:29801223-29801242 None:intergenic 40.0%
CAAGGTTTACATGAAAACGG+AGG + Chr2:29801554-29801573 None:intergenic 40.0%
CTCAAAGTGAAACAACATGC+TGG - Chr2:29800323-29800342 MsG0280008349.01.T01:intron 40.0%
CTGTCAAGAAAAAGGGTTCA+AGG - Chr2:29798673-29798692 MsG0280008349.01.T01:CDS 40.0%
GAGGGAATCAAAGTGTAACT+AGG + Chr2:29801535-29801554 None:intergenic 40.0%
GCGTAAAGAATAAGGTTGCT+TGG - Chr2:29799233-29799252 MsG0280008349.01.T01:intron 40.0%
GCTTTGTCAAGGTAGTAATC+TGG + Chr2:29800962-29800981 None:intergenic 40.0%
GGCACATGTTAAGGAACTTA+AGG - Chr2:29800470-29800489 MsG0280008349.01.T01:intron 40.0%
GGTGTGCAAGTGCAAATAAA+CGG - Chr2:29800365-29800384 MsG0280008349.01.T01:intron 40.0%
TTGACATCAACATGTGACAC+TGG - Chr2:29798521-29798540 MsG0280008349.01.T01:CDS 40.0%
! AAAGCATCATCAAGTGATGG+TGG - Chr2:29798458-29798477 MsG0280008349.01.T01:exon 40.0%
! AGGTGCCTTCTTTTACGTTT+TGG + Chr2:29798502-29798521 None:intergenic 40.0%
! CAGGTACTTTTACTTGTCTG+CGG - Chr2:29800919-29800938 MsG0280008349.01.T01:intron 40.0%
! CTCCGTTTTCATGTAAACCT+TGG - Chr2:29801552-29801571 MsG0280008349.01.T01:five_prime_UTR 40.0%
! GAAGATGAAGAACCCTGTTT+TGG + Chr2:29799111-29799130 None:intergenic 40.0%
! TCTAAGGTAACACTTCCAAG+TGG + Chr2:29798800-29798819 None:intergenic 40.0%
! TTACTTTCCCTCAGAGCATT+AGG - Chr2:29798698-29798717 MsG0280008349.01.T01:CDS 40.0%
! TTGGCTTTCCTCAATGTCTT+TGG - Chr2:29798563-29798582 MsG0280008349.01.T01:CDS 40.0%
!! CGGATTCGAGTTTTGTACAA+GGG + Chr2:29798643-29798662 None:intergenic 40.0%
!! CTTGGAAGTGTTACCTTAGA+TGG - Chr2:29798800-29798819 MsG0280008349.01.T01:CDS 40.0%
!! TCGGATTCGAGTTTTGTACA+AGG + Chr2:29798644-29798663 None:intergenic 40.0%
!! TTAACTTGTGCTCTTAGCAG+TGG - Chr2:29799471-29799490 MsG0280008349.01.T01:intron 40.0%
AAAGAAACTGGCATCTGGCT+TGG - Chr2:29799262-29799281 MsG0280008349.01.T01:intron 45.0%
AAGCCAGATGCCAGTTTCTT+TGG + Chr2:29799263-29799282 None:intergenic 45.0%
ACACACGTCTAATTCGAGGA+GGG - Chr2:29798210-29798229 MsG0280008349.01.T01:three_prime_UTR 45.0%
AGAAGACGCTTTGATTCCCA+AGG + Chr2:29801572-29801591 None:intergenic 45.0%
AGACCAAAGAAACTGGCATC+TGG - Chr2:29799257-29799276 MsG0280008349.01.T01:intron 45.0%
AGCTTCTTCTGGTGAGCTAA+GGG + Chr2:29798726-29798745 None:intergenic 45.0%
AGTGGTCAATTTGGTCCACT+TGG - Chr2:29798782-29798801 MsG0280008349.01.T01:CDS 45.0%
CTGTACGACCAACTTTACGA+TGG - Chr2:29801464-29801483 MsG0280008349.01.T01:five_prime_UTR 45.0%
CTTGACCACATCCCAAAACA+GGG - Chr2:29799096-29799115 MsG0280008349.01.T01:intron 45.0%
GCTTGGTAGACCAAAGAAAC+TGG - Chr2:29799250-29799269 MsG0280008349.01.T01:intron 45.0%
GCTTTCCTCAATGTCTTTGG+AGG - Chr2:29798566-29798585 MsG0280008349.01.T01:CDS 45.0%
GGCAATAGCTGGATGTATCT+CGG - Chr2:29801348-29801367 MsG0280008349.01.T01:CDS 45.0%
GGTGGTATATAACCACCACT+AGG + Chr2:29801163-29801182 None:intergenic 45.0%
TAGCTTCTTCTGGTGAGCTA+AGG + Chr2:29798727-29798746 None:intergenic 45.0%
TCACCTTCTGACGCATAAAG+AGG + Chr2:29800275-29800294 None:intergenic 45.0%
TCTTGACCACATCCCAAAAC+AGG - Chr2:29799095-29799114 MsG0280008349.01.T01:intron 45.0%
TGCTGGTAGTCCCATGAAAA+CGG + Chr2:29801125-29801144 None:intergenic 45.0%
TGGGGCCAAAACGTAAAAGA+AGG - Chr2:29798494-29798513 MsG0280008349.01.T01:CDS 45.0%
TTACTGGGATGACCTTGCTA+GGG - Chr2:29798856-29798875 MsG0280008349.01.T01:CDS 45.0%
TTCCTCCTCCAAAGACATTG+AGG + Chr2:29798574-29798593 None:intergenic 45.0%
TTTACTGGGATGACCTTGCT+AGG - Chr2:29798855-29798874 MsG0280008349.01.T01:CDS 45.0%
! AAAACGTGGTGTCTGGTCTT+TGG + Chr2:29799291-29799310 None:intergenic 45.0%
! AAGAAACTGGCATCTGGCTT+GGG - Chr2:29799263-29799282 MsG0280008349.01.T01:intron 45.0%
! CATCGTAAAGTTGGTCGTAC+AGG + Chr2:29801466-29801485 None:intergenic 45.0%
! TTCCTCAATGTCTTTGGAGG+AGG - Chr2:29798569-29798588 MsG0280008349.01.T01:CDS 45.0%
!! CAAGTTTCTGAGGCAATAGC+TGG - Chr2:29801337-29801356 MsG0280008349.01.T01:CDS 45.0%
!! GAGTTTTGTACAAGGGCTCT+CGG + Chr2:29798636-29798655 None:intergenic 45.0%
!!! AAGAACCCTGTTTTGGGATG+TGG + Chr2:29799104-29799123 None:intergenic 45.0%
!!! AAATATCTTTTTTATAAAAT+TGG + Chr2:29799067-29799086 None:intergenic 5.0%
!!! AATATCTTTTTTATAAAATT+GGG + Chr2:29799066-29799085 None:intergenic 5.0%
AACATGTGCCCTAAGAGCCA+GGG + Chr2:29800460-29800479 None:intergenic 50.0%
AAGGGCTCCTAATGCTCTGA+GGG + Chr2:29798708-29798727 None:intergenic 50.0%
AGGCACGTGCAACACAGATT+TGG + Chr2:29799207-29799226 None:intergenic 50.0%
GACACACGTCTAATTCGAGG+AGG - Chr2:29798209-29798228 MsG0280008349.01.T01:three_prime_UTR 50.0%
GATTGTCAAGGTCCCTAGCA+AGG + Chr2:29798871-29798890 None:intergenic 50.0%
GCACCTCTTTATGCGTCAGA+AGG - Chr2:29800269-29800288 MsG0280008349.01.T01:intron 50.0%
GGCACGTGCAACACAGATTT+GGG + Chr2:29799206-29799225 None:intergenic 50.0%
GGCTCTTAGGGCACATGTTA+AGG - Chr2:29800461-29800480 MsG0280008349.01.T01:intron 50.0%
TAACATGTGCCCTAAGAGCC+AGG + Chr2:29800461-29800480 None:intergenic 50.0%
TAAGGGCTCCTAATGCTCTG+AGG + Chr2:29798709-29798728 None:intergenic 50.0%
! TTTACAATCTCAGGGGGTGC+AGG - Chr2:29800405-29800424 MsG0280008349.01.T01:intron 50.0%
!! TACGTTTTGGCCCCAGTAGA+CGG + Chr2:29798489-29798508 None:intergenic 50.0%
ACATGTGCCCTAAGAGCCAG+GGG + Chr2:29800459-29800478 None:intergenic 55.0%
AGGTGCACACCCTCACTAAG+AGG - Chr2:29800425-29800444 MsG0280008349.01.T01:intron 55.0%
AGTGGCGTATCCAGAACCCT+GGG - Chr2:29799489-29799508 MsG0280008349.01.T01:intron 55.0%
ATGGTGGCATTGCCGTCTAC+TGG - Chr2:29798474-29798493 MsG0280008349.01.T01:CDS 55.0%
GTATCCAGAACCCTGGGTCA+GGG - Chr2:29799495-29799514 MsG0280008349.01.T01:intron 55.0%
TATCCAGAACCCTGGGTCAG+GGG - Chr2:29799496-29799515 MsG0280008349.01.T01:intron 55.0%
TCACCTGATGCAGCTCCTAG+TGG - Chr2:29801145-29801164 MsG0280008349.01.T01:CDS 55.0%
TGCACACCCTCACTAAGAGG+TGG - Chr2:29800428-29800447 MsG0280008349.01.T01:intron 55.0%
TGGTGGCATTGCCGTCTACT+GGG - Chr2:29798475-29798494 MsG0280008349.01.T01:CDS 55.0%
ATCCAGAACCCTGGGTCAGG+GGG - Chr2:29799497-29799516 MsG0280008349.01.T01:intron 60.0%
CAGTGGCGTATCCAGAACCC+TGG - Chr2:29799488-29799507 MsG0280008349.01.T01:intron 60.0%
CCACCACTAGGAGCTGCATC+AGG + Chr2:29801151-29801170 None:intergenic 60.0%
CCTGATGCAGCTCCTAGTGG+TGG - Chr2:29801148-29801167 MsG0280008349.01.T01:CDS 60.0%
CGTATCCAGAACCCTGGGTC+AGG - Chr2:29799494-29799513 MsG0280008349.01.T01:intron 60.0%
GCGGAGCCACCTCTTAGTGA+GGG + Chr2:29800437-29800456 None:intergenic 60.0%
GGAGCTGCATCAGGTGATGC+TGG + Chr2:29801142-29801161 None:intergenic 60.0%
GGTGGCATTGCCGTCTACTG+GGG - Chr2:29798476-29798495 MsG0280008349.01.T01:CDS 60.0%
!! GTCAGGGGGTGCGGAGTTTT+TGG - Chr2:29799511-29799530 MsG0280008349.01.T01:intron 60.0%
GGCGGAGCCACCTCTTAGTG+AGG + Chr2:29800438-29800457 None:intergenic 65.0%
TGTGCCCTAAGAGCCAGGGG+CGG + Chr2:29800456-29800475 None:intergenic 65.0%
AACTCCGCACCCCCTGACCC+AGG + Chr2:29799509-29799528 None:intergenic 70.0%
ACTCCGCACCCCCTGACCCA+GGG + Chr2:29799508-29799527 None:intergenic 70.0%
CACCCCCTGACCCAGGGTTC+TGG + Chr2:29799502-29799521 None:intergenic 70.0%
CTAAGAGGTGGCTCCGCCCC+TGG - Chr2:29800440-29800459 MsG0280008349.01.T01:intron 70.0%
GAACCCTGGGTCAGGGGGTG+CGG - Chr2:29799502-29799521 MsG0280008349.01.T01:intron 70.0%
! GGCTCCGCCCCTGGCTCTTA+GGG - Chr2:29800449-29800468 MsG0280008349.01.T01:intron 70.0%
! TGGCTCCGCCCCTGGCTCTT+AGG - Chr2:29800448-29800467 MsG0280008349.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 29798209 29801649 29798209 ID=MsG0280008349.01;Name=MsG0280008349.01
Chr2 mRNA 29798209 29801649 29798209 ID=MsG0280008349.01.T01;Parent=MsG0280008349.01;Name=MsG0280008349.01.T01;_AED=0.50;_eAED=0.50;_QI=186|1|1|1|1|1|2|250|340
Chr2 exon 29798209 29798969 29798209 ID=MsG0280008349.01.T01:exon:6708;Parent=MsG0280008349.01.T01
Chr2 exon 29800952 29801649 29800952 ID=MsG0280008349.01.T01:exon:6707;Parent=MsG0280008349.01.T01
Chr2 five_prime_UTR 29801464 29801649 29801464 ID=MsG0280008349.01.T01:five_prime_utr;Parent=MsG0280008349.01.T01
Chr2 CDS 29800952 29801463 29800952 ID=MsG0280008349.01.T01:cds;Parent=MsG0280008349.01.T01
Chr2 CDS 29798459 29798969 29798459 ID=MsG0280008349.01.T01:cds;Parent=MsG0280008349.01.T01
Chr2 three_prime_UTR 29798209 29798458 29798209 ID=MsG0280008349.01.T01:three_prime_utr;Parent=MsG0280008349.01.T01
Gene Sequence

>MsG0280008349.01.T01

ATGGATACAAAAAGGCAAGCATTGCTCCTTTTGTTAGTCTTGACAATATTTCCCTTCACTATCAAAGCATCATCAAGTGATGGTGGCATTGCCGTCTACTGGGGCCAAAACGTAAAAGAAGGCACCTTGACATCAACATGTGACACTGGTAATTTCGAGATTGTACTCTTGGCTTTCCTCAATGTCTTTGGAGGAGGAACTGTCCCAAGTTTGAACTTTGCAAATCATTGTGGTCATGCCGAGAGCCCTTGTACAAAACTCGAATCCGAAATAAAACACTGTCAAGAAAAAGGGTTCAAGGTTTTACTTTCCCTCAGAGCATTAGGAGCCCTTAGCTCACCAGAAGAAGCTAAAACTGTTTCTGATTACCTCTATACTAACTTTCTTAGTGGTCAATTTGGTCCACTTGGAAGTGTTACCTTAGATGGTGTTGATTTTAACATTGAAGGAGGTACAAATCTTTACTGGGATGACCTTGCTAGGGACCTTGACAATCTAAGACAACAAAACAGGTACCTCTCTCAAAAAAAAAAAATCTCTTGCAGGTACTTTTACTTGTCTGCGGCACCCCAATGTTATATGCCAGATTACTACCTTGACAAAGCTATCAAAACTGGCTTGTTTGATTATGTACTTGTTAAATTCTACAATAACCCTCCATGTCAATATGATAAAAAAAACTCAGATGCTACATTGCTCTTAAAATCATGGAATGCTTGGACATCTTTAGTTCTACCAAATAATACCGTTTTCATGGGACTACCAGCATCACCTGATGCAGCTCCTAGTGGTGGTTATATACCACCAAATGATCTCATTTCTAAGGTTCTTCCTTCCATTAAACCAACTTCCAACTATGGAGGAATTATGCTTTGGGATAGATTTCATGATGTTGGAAATAATGATTACAGCTATCAGATAAAGGAGCATGTCAAACGATCTGTTCTTCGTTTTAAGACACAAGTTTCTGAGGCAATAGCTGGATGTATCTCGGCAGCTTTGAACTCCATGTTTCCGAATTAA

Protein sequence

>MsG0280008349.01.T01

MDTKRQALLLLLVLTIFPFTIKASSSDGGIAVYWGQNVKEGTLTSTCDTGNFEIVLLAFLNVFGGGTVPSLNFANHCGHAESPCTKLESEIKHCQEKGFKVLLSLRALGALSSPEEAKTVSDYLYTNFLSGQFGPLGSVTLDGVDFNIEGGTNLYWDDLARDLDNLRQQNRYLSQKKKISCRYFYLSAAPQCYMPDYYLDKAIKTGLFDYVLVKFYNNPPCQYDKKNSDATLLLKSWNAWTSLVLPNNTVFMGLPASPDAAPSGGYIPPNDLISKVLPSIKPTSNYGGIMLWDRFHDVGNNDYSYQIKEHVKRSVLRFKTQVSEAIAGCISAALNSMFPN*