AlfalfaGEDB | MsG0380013979.01

M. sativa cultivar ZhongmuNo.1 / MsG0380013979.01

KEGG: K02986
GO: GO:0003723
PFAM: PF01479

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013979.01.T01	BBN69936.1	73.494	166	18	2	1	140	100	265	9.80E-75	238

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013979.01.T01	Q9BBT5	91.398	93	8	0	1	93	100	192	3.46E-57	179

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013979.01.T01	A0A5H2Y7H7	73.494	166	18	2	1	140	100	265	4.68e-75	238

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048611.01	MsG0380013979.01	0.817925	2.560799e-52	1.890022e-49
MsG0080048689.01	MsG0380013979.01	0.873850	1.068213e-67	4.704711e-64
MsG0080049077.01	MsG0380013979.01	0.808478	3.036247e-50	1.737938e-47
MsG0080049078.01	MsG0380013979.01	0.861761	8.174979e-64	2.338073e-60
MsG0080049079.01	MsG0380013979.01	0.838682	2.487554e-57	3.356745e-54
MsG0080049080.01	MsG0380013979.01	0.883981	2.831409e-71	1.834904e-67
MsG0180000325.01	MsG0380013979.01	0.815871	7.404564e-52	5.165786e-49
MsG0180000502.01	MsG0380013979.01	0.806495	8.002080e-50	4.349605e-47
MsG0180001249.01	MsG0380013979.01	0.807610	4.647629e-50	2.600142e-47
MsG0180002227.01	MsG0380013979.01	0.803711	3.059264e-49	1.548131e-46
MsG0180003933.01	MsG0380013979.01	0.823968	1.041073e-53	9.099363e-51
MsG0180004292.01	MsG0380013979.01	0.808496	3.010687e-50	1.724049e-47
MsG0180004302.01	MsG0380013979.01	0.830997	2.142444e-55	2.294722e-52
MsG0180004937.01	MsG0380013979.01	0.801555	8.518625e-49	4.080198e-46
MsG0180005879.01	MsG0380013979.01	0.813652	2.296649e-51	1.508574e-48
MsG0280006336.01	MsG0380013979.01	0.803017	4.260250e-49	2.117758e-46
MsG0280011279.01	MsG0380013979.01	0.816773	4.652887e-52	3.327296e-49
MsG0380012443.01	MsG0380013979.01	0.807741	4.359423e-50	2.447387e-47
MsG0380013111.01	MsG0380013979.01	0.811978	5.341822e-51	3.354345e-48
MsG0380013888.01	MsG0380013979.01	0.822213	2.671290e-53	2.221509e-50
MsG0380013889.01	MsG0380013979.01	0.952209	3.964563e-110	9.540597e-105
MsG0380013917.01	MsG0380013979.01	0.836551	8.757290e-57	1.107321e-53
MsG0380013918.01	MsG0380013979.01	0.880804	4.059614e-70	2.321214e-66
MsG0380013919.01	MsG0380013979.01	0.843339	1.489165e-58	2.322990e-55
MsG0380013926.01	MsG0380013979.01	0.801226	9.949429e-49	4.726153e-46
MsG0380013927.01	MsG0380013979.01	0.838146	3.419410e-57	4.538807e-54
MsG0380013930.01	MsG0380013979.01	0.848516	5.833272e-60	1.073286e-56
MsG0380013931.01	MsG0380013979.01	0.832631	8.467381e-56	9.518765e-53
MsG0380013932.01	MsG0380013979.01	0.867035	1.841262e-65	6.336642e-62
MsG0380013935.01	MsG0380013979.01	0.836343	9.892793e-57	1.243272e-53
MsG0380013938.01	MsG0380013979.01	0.840193	1.007725e-57	1.424639e-54
MsG0380013939.01	MsG0380013979.01	0.854236	1.407619e-61	3.123339e-58
MsG0380013952.01	MsG0380013979.01	0.821199	4.584273e-53	3.705095e-50
MsG0380013955.01	MsG0380013979.01	0.854772	9.852242e-62	2.224829e-58
MsG0380013958.01	MsG0380013979.01	0.866516	2.693131e-65	9.102031e-62
MsG0380013959.01	MsG0380013979.01	0.816221	6.184609e-52	4.356469e-49
MsG0380013963.01	MsG0380013979.01	0.843672	1.213134e-58	1.912146e-55
MsG0380013964.01	MsG0380013979.01	0.882843	7.411543e-71	4.586397e-67
MsG0380013965.01	MsG0380013979.01	0.817601	3.030068e-52	2.216480e-49
MsG0380013969.01	MsG0380013979.01	0.817950	2.527695e-52	1.866739e-49
MsG0380013970.01	MsG0380013979.01	0.849988	2.269640e-60	4.380682e-57
MsG0380013972.01	MsG0380013979.01	0.829267	5.664311e-55	5.769068e-52
MsG0380013976.01	MsG0380013979.01	0.845702	3.443929e-59	5.789094e-56
MsG0380013978.01	MsG0380013979.01	0.851053	1.140009e-60	2.278521e-57
MsG0380013979.01	MsG0380013980.01	0.854633	1.081187e-61	2.430092e-58
MsG0380013979.01	MsG0380013981.01	0.864297	1.345982e-64	4.205282e-61
MsG0380013979.01	MsG0380013983.01	0.875516	2.897597e-68	1.356601e-64
MsG0380013979.01	MsG0380013992.01	0.846627	1.928222e-59	3.339332e-56
MsG0380013979.01	MsG0380013995.01	0.835319	1.797910e-56	2.191019e-53
MsG0380013979.01	MsG0380013996.01	0.858530	7.731360e-63	1.979255e-59
MsG0380013979.01	MsG0380014004.01	0.801702	7.949479e-49	3.821638e-46
MsG0380013979.01	MsG0380014007.01	0.811210	7.844761e-51	4.826932e-48
MsG0380013979.01	MsG0380014009.01	0.818392	2.007234e-52	1.500685e-49
MsG0380013979.01	MsG0380014010.01	0.802471	5.523919e-49	2.708140e-46
MsG0380013979.01	MsG0380014012.01	0.818977	1.478929e-52	1.123796e-49
MsG0380013979.01	MsG0380014013.01	0.833908	4.068743e-56	4.752864e-53
MsG0380013979.01	MsG0380014022.01	0.862934	3.564508e-64	1.062107e-60
MsG0380013979.01	MsG0380014028.01	0.834113	3.616143e-56	4.249632e-53
MsG0380013979.01	MsG0380014030.01	0.808400	3.154912e-50	1.802192e-47
MsG0380013979.01	MsG0380014034.01	0.842275	2.855426e-58	4.307397e-55
MsG0380013979.01	MsG0380014035.01	0.887004	2.087113e-72	1.525264e-68
MsG0380013979.01	MsG0380014036.01	0.856253	3.645764e-62	8.647515e-59
MsG0380013979.01	MsG0380014037.01	0.859152	5.039448e-63	1.317807e-59
MsG0380013979.01	MsG0380014038.01	0.809362	1.964208e-50	1.150977e-47
MsG0380013979.01	MsG0380014041.01	0.817705	2.871581e-52	2.106575e-49
MsG0380013979.01	MsG0380014042.01	0.814115	1.815567e-51	1.207587e-48
MsG0380013979.01	MsG0380014048.01	0.811960	5.391199e-51	3.383669e-48
MsG0380013979.01	MsG0380014050.01	0.838859	2.238133e-57	3.036493e-54
MsG0380013979.01	MsG0380014053.01	0.849119	3.968084e-60	7.446085e-57
MsG0380013979.01	MsG0380014055.01	0.819121	1.371586e-52	1.046228e-49
MsG0380013979.01	MsG0380014056.01	0.823178	1.592760e-53	1.361402e-50
MsG0380013979.01	MsG0380014729.01	0.818784	1.636139e-52	1.236455e-49
MsG0380013979.01	MsG0380015530.01	0.800792	1.220663e-48	5.734771e-46
MsG0380013979.01	MsG0380015733.01	0.807797	4.239912e-50	2.383762e-47
MsG0380013979.01	MsG0380015974.01	0.809051	2.290070e-50	1.330748e-47
MsG0380013979.01	MsG0380016424.01	0.802886	4.534874e-49	2.246914e-46
MsG0380013979.01	MsG0380016531.01	0.809908	1.499466e-50	8.914041e-48
MsG0380013979.01	MsG0380016723.01	0.811714	6.097589e-51	3.801951e-48
MsG0380013979.01	MsG0380016751.01	0.814330	1.627581e-51	1.088926e-48
MsG0380013979.01	MsG0380017006.01	0.800419	1.454148e-48	6.767917e-46
MsG0380013979.01	MsG0480018089.01	0.810863	9.330672e-51	5.688766e-48
MsG0380013979.01	MsG0480018983.01	0.803300	3.723772e-49	1.864575e-46
MsG0380013979.01	MsG0480022300.01	0.802941	4.416615e-49	2.191325e-46
MsG0380013979.01	MsG0480023371.01	0.830684	2.556278e-55	2.712830e-52
MsG0380013979.01	MsG0480023505.01	0.809067	2.272024e-50	1.320830e-47
MsG0380013979.01	MsG0480023881.01	0.821714	3.486196e-53	2.858360e-50
MsG0380013979.01	MsG0580024128.01	0.803852	2.861027e-49	1.453138e-46
MsG0380013979.01	MsG0580024982.01	0.822814	1.936989e-53	1.638698e-50
MsG0380013979.01	MsG0580026430.01	0.808522	2.971919e-50	1.703038e-47
MsG0380013979.01	MsG0580027249.01	0.822347	2.487123e-53	2.076403e-50
MsG0380013979.01	MsG0580027254.01	0.818973	1.482324e-52	1.126210e-49
MsG0380013979.01	MsG0580028853.01	0.817970	2.501459e-52	1.848371e-49
MsG0380013979.01	MsG0580029673.01	0.814236	1.707777e-51	1.139647e-48
MsG0380013979.01	MsG0680032055.01	0.809289	2.036413e-50	1.190939e-47
MsG0380013979.01	MsG0680032339.01	0.802505	5.434575e-49	2.666674e-46
MsG0380013979.01	MsG0780036678.01	0.826703	2.345917e-54	2.216692e-51
MsG0380013979.01	MsG0780037705.01	0.806687	7.286980e-50	3.980370e-47
MsG0380013979.01	MsG0780039596.01	0.833769	4.408156e-56	5.127347e-53
MsG0380013979.01	MsG0780039707.01	0.804883	1.744401e-49	9.098959e-47
MsG0380013979.01	MsG0780039859.01	0.839139	1.894287e-57	2.591916e-54
MsG0380013979.01	MsG0780040315.01	0.841876	3.641965e-58	5.425065e-55
MsG0380013979.01	MsG0780040316.01	0.884485	1.842740e-71	1.217688e-67
MsG0380013979.01	MsG0780040317.01	0.876819	1.030982e-68	5.069620e-65
MsG0380013979.01	MsG0780040644.01	0.817973	2.497690e-52	1.845738e-49
MsG0380013979.01	MsG0780041792.01	0.822390	2.429838e-53	2.031162e-50
MsG0380013979.01	MsG0880043032.01	0.810274	1.250448e-50	7.504839e-48
MsG0380013979.01	MsG0880043541.01	0.851626	7.852705e-61	1.598990e-57
MsG0380013979.01	MsG0880044312.01	0.806526	7.880348e-50	4.286857e-47
MsG0380013979.01	MsG0880044314.01	0.805113	1.561059e-49	8.190199e-47
MsG0380013979.01	MsG0880044440.01	0.874032	9.266654e-68	4.108607e-64
MsG0380013979.01	MsG0880045073.01	0.802290	6.017579e-49	2.936705e-46
MsG0380013979.01	MsG0880045252.01	0.810858	9.349838e-51	5.699807e-48
MsG0380013979.01	MsG0880045261.01	0.804976	1.667710e-49	8.719302e-47
MsG0380013979.01	MsG0880045283.01	0.835443	1.673050e-56	2.046191e-53
MsG0380013979.01	MsG0880045412.01	0.834820	2.403291e-56	2.884712e-53
MsG0380013979.01	MsG0880046462.01	0.800999	1.107424e-48	5.230792e-46
MsG0280007026.01	MsG0380013979.01	0.806474	8.085060e-50	4.392427e-47
MsG0280007041.01	MsG0380013979.01	0.871188	8.267985e-67	3.304878e-63
MsG0280007042.01	MsG0380013979.01	0.866690	2.371071e-65	8.063952e-62
MsG0280007600.01	MsG0380013979.01	0.806548	7.796027e-50	4.243490e-47
MsG0280009863.01	MsG0380013979.01	0.806011	1.011679e-49	5.431903e-47
MsG0280010137.01	MsG0380013979.01	0.817208	3.714676e-52	2.688204e-49
MsG0280010281.01	MsG0380013979.01	0.811490	6.822203e-51	4.228883e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013979.01.T01	MTR_4g051220	96.774	93	3	0	1	93	100	192	3.26e-62	189
MsG0380013979.01.T01	MTR_0002s0590	66.265	83	28	0	1	83	100	182	7.13e-34	121
MsG0380013979.01.T01	MTR_0477s0040	100.000	42	0	0	99	140	1	42	1.01e-23	87.8
MsG0380013979.01.T01	MTR_4g051213	100.000	42	0	0	99	140	1	42	1.01e-23	87.8
MsG0380013979.01.T01	MTR_8g102790	91.892	37	3	0	99	135	1	37	4.52e-18	73.2
MsG0380013979.01.T01	MTR_1g041800	67.857	56	6	1	99	142	1	56	3.57e-17	70.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013979.01.T01	ATCG00380	79.570	93	19	0	1	93	100	192	8.05e-47	150

Find 30 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATCAAATAATAGATAGTAAA+TGG	0.189787	3:-48556133	MsG0380013979.01.T01:CDS
CGAATAATTCCGACAACTTC+TGG	0.195705	3:-48555431	MsG0380013979.01.T01:CDS
ATGACTAGATCTCGGATAAA+TGG	0.278088	3:-48555500	MsG0380013979.01.T01:CDS
GATTGACTAATCCTTTATAT+TGG	0.284280	3:+48556153	None:intergenic
CTTGATCCATTCCAATATAA+AGG	0.291752	3:-48556164	MsG0380013979.01.T01:CDS
AATTATTCGTAATAAGATAT+TGG	0.314059	3:+48555445	None:intergenic
TTTGAAAATTAATGAATTGC+TGG	0.365999	3:-48556105	MsG0380013979.01.T01:intron
ATGGATTGGCAATTCTTCGC+GGG	0.450528	3:+48556193	None:intergenic
TTTATCCGAGATCTAGTCAT+AGG	0.463215	3:+48555503	None:intergenic
TGAGGTTTGCAACGATAACT+TGG	0.468099	3:+48556284	None:intergenic
ACTAATCCTTTATATTGGAA+TGG	0.475526	3:+48556158	None:intergenic
GTCTGTGGTTAACTAATTGA+CGG	0.477609	3:+48556339	None:intergenic
TCAAATAATAGATAGTAAAT+GGG	0.487910	3:-48556132	MsG0380013979.01.T01:CDS
ATAATAGATAGTAAATGGGT+TGG	0.504615	3:-48556128	MsG0380013979.01.T01:CDS
GATATTGGCTACAATGGTAA+AGG	0.509030	3:+48555460	None:intergenic
GGATCAAGAGTCAAATGGAT+TGG	0.511159	3:+48556179	None:intergenic
TCTGTGGTTAACTAATTGAC+GGG	0.521261	3:+48556340	None:intergenic
AATGGATTGGCAATTCTTCG+CGG	0.545268	3:+48556192	None:intergenic
TCAAGATATTATTACAGCGA+AGG	0.559737	3:-48556264	MsG0380013979.01.T01:CDS
TTCGCTGTAATAATATCTTG+AGG	0.560954	3:+48556266	None:intergenic
TAATAAGATATTGGCTACAA+TGG	0.565840	3:+48555454	None:intergenic
CAAGATATTATTACAGCGAA+GGG	0.569002	3:-48556263	MsG0380013979.01.T01:CDS
TGCTACCTATGACTAGATCT+CGG	0.572595	3:-48555508	MsG0380013979.01.T01:CDS
GCATTCACTTATTACAGAGA+TGG	0.579208	3:-48555398	MsG0380013979.01.T01:CDS
TTAACTAATTGACGGGCTTG+AGG	0.581554	3:+48556347	None:intergenic
GGAATGGATCAAGAGTCAAA+TGG	0.582974	3:+48556174	None:intergenic
GATTGGCAATTCTTCGCGGG+GGG	0.584547	3:+48556196	None:intergenic
TGGATTGGCAATTCTTCGCG+GGG	0.610754	3:+48556194	None:intergenic
CATTAACTAAAACATGTCTG+TGG	0.663264	3:+48556324	None:intergenic
GGATTGGCAATTCTTCGCGG+GGG	0.681198	3:+48556195	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TAATCAAATAATTTATCTTA+CGG	+	Chr3:48556116-48556135	None:intergenic	10.0%
!!	AATTATTCGTAATAAGATAT+TGG	+	Chr3:48556308-48556327	None:intergenic	15.0%
!!	ATCAAATAATAGATAGTAAA+TGG	-	Chr3:48555617-48555636	MsG0380013979.01.T01:intron	15.0%
!!	TCAAATAATAGATAGTAAAT+GGG	-	Chr3:48555618-48555637	MsG0380013979.01.T01:intron	15.0%
!!!	TAAACAATGAAATTTTAGAA+TGG	-	Chr3:48556217-48556236	MsG0380013979.01.T01:CDS	15.0%
!!	GTTTATTACAGAAAGAAATT+AGG	-	Chr3:48555812-48555831	MsG0380013979.01.T01:intron	20.0%
!!	TTCTGTAATAAACAAAATAG+TGG	+	Chr3:48555805-48555824	None:intergenic	20.0%
!!	TTTGAAAATTAATGAATTGC+TGG	-	Chr3:48555645-48555664	MsG0380013979.01.T01:intron	20.0%
!	AACATTGATGAACTTGATAA+GGG	-	Chr3:48555895-48555914	MsG0380013979.01.T01:intron	25.0%
!	ACTAATCCTTTATATTGGAA+TGG	+	Chr3:48555595-48555614	None:intergenic	25.0%
!	AGTACGAAATAACGTAAAAA+TGG	+	Chr3:48556154-48556173	None:intergenic	25.0%
!	ATAAAATAATCCCCAAACAA+AGG	+	Chr3:48556190-48556209	None:intergenic	25.0%
!	ATAATAGATAGTAAATGGGT+TGG	-	Chr3:48555622-48555641	MsG0380013979.01.T01:intron	25.0%
!	GATTGACTAATCCTTTATAT+TGG	+	Chr3:48555600-48555619	None:intergenic	25.0%
!	TAACATTGATGAACTTGATA+AGG	-	Chr3:48555894-48555913	MsG0380013979.01.T01:intron	25.0%
!	TATTGTACAATTCCTTTGTT+TGG	-	Chr3:48556175-48556194	MsG0380013979.01.T01:CDS	25.0%
!!	AACAAAATAGTGGAATAAAG+TGG	+	Chr3:48555795-48555814	None:intergenic	25.0%
!!	ACAAAATAGTGGAATAAAGT+GGG	+	Chr3:48555794-48555813	None:intergenic	25.0%
!!	ATTGTACAATTCCTTTGTTT+GGG	-	Chr3:48556176-48556195	MsG0380013979.01.T01:CDS	25.0%
!!	TAATAAGATATTGGCTACAA+TGG	+	Chr3:48556299-48556318	None:intergenic	25.0%
!!!	TTAAGAATAATTTTGATCCG+AGG	-	Chr3:48555716-48555735	MsG0380013979.01.T01:intron	25.0%
	CAAATAATTTATCTTACGGC+AGG	+	Chr3:48556112-48556131	None:intergenic	30.0%
	CAAGATATTATTACAGCGAA+GGG	-	Chr3:48555487-48555506	MsG0380013979.01.T01:CDS	30.0%
	CATTAACTAAAACATGTCTG+TGG	+	Chr3:48555429-48555448	None:intergenic	30.0%
	CTTGATCCATTCCAATATAA+AGG	-	Chr3:48555586-48555605	MsG0380013979.01.T01:intron	30.0%
	TAATCATTATGTAGGAGAGA+TGG	+	Chr3:48556001-48556020	None:intergenic	30.0%
	TCAAGATATTATTACAGCGA+AGG	-	Chr3:48555486-48555505	MsG0380013979.01.T01:CDS	30.0%
	TCATTATTCCAACTTTGATG+TGG	+	Chr3:48555848-48555867	None:intergenic	30.0%
	TTCGCTGTAATAATATCTTG+AGG	+	Chr3:48555487-48555506	None:intergenic	30.0%
!	TTGTACAATTCCTTTGTTTG+GGG	-	Chr3:48556177-48556196	MsG0380013979.01.T01:CDS	30.0%
!!!	CACAGACATGTTTTAGTTAA+TGG	-	Chr3:48555427-48555446	MsG0380013979.01.T01:CDS	30.0%
	ATGACTAGATCTCGGATAAA+TGG	-	Chr3:48556250-48556269	MsG0380013979.01.T01:CDS	35.0%
	CATACATATTCCATTTGCGT+AGG	-	Chr3:48556043-48556062	MsG0380013979.01.T01:intron	35.0%
	GAGCAAAAAAACTTACTTCG+AGG	-	Chr3:48556086-48556105	MsG0380013979.01.T01:intron	35.0%
	GCATTCACTTATTACAGAGA+TGG	-	Chr3:48556352-48556371	MsG0380013979.01.T01:CDS	35.0%
	GTCTGTGGTTAACTAATTGA+CGG	+	Chr3:48555414-48555433	None:intergenic	35.0%
	TAGAGAATCCACATCAAAGT+TGG	-	Chr3:48555837-48555856	MsG0380013979.01.T01:intron	35.0%
	TCTGTGGTTAACTAATTGAC+GGG	+	Chr3:48555413-48555432	None:intergenic	35.0%
	TTTATCCGAGATCTAGTCAT+AGG	+	Chr3:48556250-48556269	None:intergenic	35.0%
!	GATATTGGCTACAATGGTAA+AGG	+	Chr3:48556293-48556312	None:intergenic	35.0%
!	TCTTTTTCTCCAGAAGTTGT+CGG	+	Chr3:48556331-48556350	None:intergenic	35.0%
	ACCCACGTCTATACATGAAT+GGG	+	Chr3:48555749-48555768	None:intergenic	40.0%
	CGAATAATTCCGACAACTTC+TGG	-	Chr3:48556319-48556338	MsG0380013979.01.T01:CDS	40.0%
	GGAATGGATCAAGAGTCAAA+TGG	+	Chr3:48555579-48555598	None:intergenic	40.0%
	GGATCAAGAGTCAAATGGAT+TGG	+	Chr3:48555574-48555593	None:intergenic	40.0%
	TACCCACGTCTATACATGAA+TGG	+	Chr3:48555750-48555769	None:intergenic	40.0%
	TCATGTATAGACGTGGGTAT+AGG	-	Chr3:48555751-48555770	MsG0380013979.01.T01:intron	40.0%
	TGAGGTTTGCAACGATAACT+TGG	+	Chr3:48555469-48555488	None:intergenic	40.0%
	TGATGAACTTGATAAGGGTG+CGG	-	Chr3:48555900-48555919	MsG0380013979.01.T01:intron	40.0%
	TGCTACCTATGACTAGATCT+CGG	-	Chr3:48556242-48556261	MsG0380013979.01.T01:CDS	40.0%
!	ATAGTGGAATAAAGTGGGCA+AGG	+	Chr3:48555789-48555808	None:intergenic	40.0%
!	CGAGGGCATAATCATTATGT+AGG	+	Chr3:48556009-48556028	None:intergenic	40.0%
!	GACAACTTCTGGAGAAAAAG+AGG	-	Chr3:48556330-48556349	MsG0380013979.01.T01:CDS	40.0%
!!	AATGGATTGGCAATTCTTCG+CGG	+	Chr3:48555561-48555580	None:intergenic	40.0%
!!	GTAGGCTTTTTGTTTACCGA+GGG	+	Chr3:48555943-48555962	None:intergenic	40.0%
!!	TGTAGGCTTTTTGTTTACCG+AGG	+	Chr3:48555944-48555963	None:intergenic	40.0%
!!	TTAACTAATTGACGGGCTTG+AGG	+	Chr3:48555406-48555425	None:intergenic	40.0%
	ATGCCTCACTATTCACTCGA+GGG	+	Chr3:48556026-48556045	None:intergenic	45.0%
	ATTATGTGCGCCTACGCAAA+TGG	+	Chr3:48556056-48556075	None:intergenic	45.0%
	CATGAATGGGGGAAAATCCT+CGG	+	Chr3:48555736-48555755	None:intergenic	45.0%
	CCACGTCTATACATGAATGG+GGG	+	Chr3:48555747-48555766	None:intergenic	45.0%
	CCCACGTCTATACATGAATG+GGG	+	Chr3:48555748-48555767	None:intergenic	45.0%
	CCCCATTCATGTATAGACGT+GGG	-	Chr3:48555745-48555764	MsG0380013979.01.T01:intron	45.0%
	TATGCCTCACTATTCACTCG+AGG	+	Chr3:48556027-48556046	None:intergenic	45.0%
!	TAGCACTGGAACTGCTATGT+AGG	+	Chr3:48555961-48555980	None:intergenic	45.0%
!!	ATGGATTGGCAATTCTTCGC+GGG	+	Chr3:48555560-48555579	None:intergenic	45.0%
!!!	CTTAATTTAATATTTTAATT+AGG	+	Chr3:48555701-48555720	None:intergenic	5.0%
	AAGAGAGGGATTCGAACCCT+CGG	-	Chr3:48555924-48555943	MsG0380013979.01.T01:intron	50.0%
	ATGCCCTCGAGTGAATAGTG+AGG	-	Chr3:48556020-48556039	MsG0380013979.01.T01:intron	50.0%
	CCCCCATTCATGTATAGACG+TGG	-	Chr3:48555744-48555763	MsG0380013979.01.T01:intron	50.0%
!	GATAAGGGTGCGGAAAGAGA+GGG	-	Chr3:48555910-48555929	MsG0380013979.01.T01:intron	50.0%
!	TGATAAGGGTGCGGAAAGAG+AGG	-	Chr3:48555909-48555928	MsG0380013979.01.T01:intron	50.0%
!!	TGGATTGGCAATTCTTCGCG+GGG	+	Chr3:48555559-48555578	None:intergenic	50.0%
	AGAGATGGCCGAGTGGTTGA+AGG	+	Chr3:48555986-48556005	None:intergenic	55.0%
	ATGTAGGAGAGATGGCCGAG+TGG	+	Chr3:48555993-48556012	None:intergenic	55.0%
	GATTGGCAATTCTTCGCGGG+GGG	+	Chr3:48555557-48555576	None:intergenic	55.0%
	GTGCTACGCCTTCAACCACT+CGG	-	Chr3:48555975-48555994	MsG0380013979.01.T01:intron	55.0%
!	AGTGGTTGAAGGCGTAGCAC+TGG	+	Chr3:48555975-48555994	None:intergenic	55.0%
!	GGATTGGCAATTCTTCGCGG+GGG	+	Chr3:48555558-48555577	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	48555388	48556384	48555388	ID=MsG0380013979.01;Name=MsG0380013979.01
Chr3	mRNA	48555388	48556384	48555388	ID=MsG0380013979.01.T01;Parent=MsG0380013979.01;Name=MsG0380013979.01.T01;_AED=0.50;_eAED=0.53;_QI=0\|0\|0\|1\|0\|0\|2\|0\|142
Chr3	exon	48556106	48556384	48556106	ID=MsG0380013979.01.T01:exon:9346;Parent=MsG0380013979.01.T01
Chr3	exon	48555388	48555537	48555388	ID=MsG0380013979.01.T01:exon:9345;Parent=MsG0380013979.01.T01
Chr3	CDS	48556106	48556384	48556106	ID=MsG0380013979.01.T01:cds;Parent=MsG0380013979.01.T01
Chr3	CDS	48555388	48555537	48555388	ID=MsG0380013979.01.T01:cds;Parent=MsG0380013979.01.T01

Gene Sequence

>MsG0380013979.01.T01

ATGGCTTCGACTATTCCTCAAGCCCGTCAATTAGTTAACCACAGACATGTTTTAGTTAATGGTCGTATAGTAGATATACCAAGTTATCGTTGCAAACCTCAAGATATTATTACAGCGAAGGGTGAACAAAAATCTAGAACTCTGATTCAAAATTCTCTTGAATCAGCCCCCCGCGAAGAATTGCCAATCCATTTGACTCTTGATCCATTCCAATATAAAGGATTAGTCAATCAAATAATAGATAGTAAATGGGTTGGTTTGAAAATTAATGAATTGCTGAATGGATTGCTACCTATGACTAGATCTCGGATAAATGGAAATTTTATTGATAAGACCTTTACCATTGTAGCCAATATCTTATTACGAATAATTCCGACAACTTCTGGAGAAAAAGAGGCATTCACTTATTACAGAGATGGTGCGATTTGA

Protein sequence

>MsG0380013979.01.T01

MASTIPQARQLVNHRHVLVNGRIVDIPSYRCKPQDIITAKGEQKSRTLIQNSLESAPREELPIHLTLDPFQYKGLVNQIIDSKWVGLKINELLNGLLPMTRSRINGNFIDKTFTIVANILLRIIPTTSGEKEAFTYYRDGAI*