Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015538.01.T01 | XP_003601012.1 | 91.036 | 502 | 45 | 0 | 1 | 502 | 1 | 502 | 0 | 882 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015538.01.T01 | G7J2F8 | 91.036 | 502 | 45 | 0 | 1 | 502 | 1 | 502 | 0.0 | 882 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047944.01 | MsG0380015538.01 | 0.829942 | 3.881293e-55 | 4.031181e-52 |
| MsG0080047957.01 | MsG0380015538.01 | 0.804819 | 1.798933e-49 | 9.367685e-47 |
| MsG0080047959.01 | MsG0380015538.01 | 0.814429 | 1.547373e-51 | 1.038056e-48 |
| MsG0080048964.01 | MsG0380015538.01 | 0.824486 | 7.864007e-54 | 6.975244e-51 |
| MsG0180000470.01 | MsG0380015538.01 | 0.822459 | 2.342060e-53 | 1.961483e-50 |
| MsG0180000503.01 | MsG0380015538.01 | 0.828194 | 1.029751e-54 | 1.016297e-51 |
| MsG0180000679.01 | MsG0380015538.01 | 0.809709 | 1.654484e-50 | 9.784579e-48 |
| MsG0180000777.01 | MsG0380015538.01 | 0.804471 | 2.125800e-49 | 1.096980e-46 |
| MsG0180001141.01 | MsG0380015538.01 | 0.807468 | 4.980733e-50 | 2.776503e-47 |
| MsG0180003510.01 | MsG0380015538.01 | 0.816804 | 4.577200e-52 | 3.275981e-49 |
| MsG0180003669.01 | MsG0380015538.01 | 0.825657 | 4.159779e-54 | 3.815359e-51 |
| MsG0180003671.01 | MsG0380015538.01 | 0.801135 | 1.038725e-48 | 4.923030e-46 |
| MsG0180003673.01 | MsG0380015538.01 | 0.813234 | 2.837944e-51 | 1.842901e-48 |
| MsG0180003864.01 | MsG0380015538.01 | 0.813183 | 2.912167e-51 | 1.888471e-48 |
| MsG0180003952.01 | MsG0380015538.01 | 0.819370 | 1.203300e-52 | 9.241651e-50 |
| MsG0180004465.01 | MsG0380015538.01 | 0.822446 | 2.358667e-53 | 1.974730e-50 |
| MsG0180004765.01 | MsG0380015538.01 | 0.800068 | 1.714111e-48 | 7.906868e-46 |
| MsG0180004996.01 | MsG0380015538.01 | 0.802986 | 4.323297e-49 | 2.147464e-46 |
| MsG0180005160.01 | MsG0380015538.01 | 0.801098 | 1.057083e-48 | 5.005431e-46 |
| MsG0180005799.01 | MsG0380015538.01 | 0.811674 | 6.221852e-51 | 3.875091e-48 |
| MsG0180005842.01 | MsG0380015538.01 | 0.815707 | 8.052782e-52 | 5.593316e-49 |
| MsG0180006016.01 | MsG0380015538.01 | 0.804956 | 1.683754e-49 | 8.798894e-47 |
| MsG0180006134.01 | MsG0380015538.01 | 0.813695 | 2.247616e-51 | 1.478065e-48 |
| MsG0180006138.01 | MsG0380015538.01 | 0.810123 | 1.347555e-50 | 8.056135e-48 |
| MsG0280006299.01 | MsG0380015538.01 | 0.802581 | 5.242434e-49 | 2.577299e-46 |
| MsG0280006356.01 | MsG0380015538.01 | 0.802395 | 5.726332e-49 | 2.802053e-46 |
| MsG0280010702.01 | MsG0380015538.01 | 0.820368 | 7.116926e-53 | 5.620485e-50 |
| MsG0280011156.01 | MsG0380015538.01 | 0.834919 | 2.268552e-56 | 2.731297e-53 |
| MsG0280011446.01 | MsG0380015538.01 | 0.817548 | 3.114721e-52 | 2.275175e-49 |
| MsG0280011472.01 | MsG0380015538.01 | 0.803537 | 3.325360e-49 | 1.675386e-46 |
| MsG0380011895.01 | MsG0380015538.01 | 0.823500 | 1.339325e-53 | 1.155287e-50 |
| MsG0380013176.01 | MsG0380015538.01 | 0.803505 | 3.376540e-49 | 1.699769e-46 |
| MsG0380014173.01 | MsG0380015538.01 | 0.804199 | 2.422177e-49 | 1.241219e-46 |
| MsG0380014177.01 | MsG0380015538.01 | 0.817591 | 3.046166e-52 | 2.227635e-49 |
| MsG0380014365.01 | MsG0380015538.01 | 0.807738 | 4.365075e-50 | 2.450390e-47 |
| MsG0380014573.01 | MsG0380015538.01 | 0.828812 | 7.302932e-55 | 7.337682e-52 |
| MsG0380014770.01 | MsG0380015538.01 | 0.839056 | 1.990671e-57 | 2.716939e-54 |
| MsG0380015538.01 | MsG0380015830.01 | 0.804156 | 2.472854e-49 | 1.265816e-46 |
| MsG0380015538.01 | MsG0380016581.01 | 0.829653 | 4.562628e-55 | 4.699406e-52 |
| MsG0380015538.01 | MsG0380016624.01 | 0.822466 | 2.333620e-53 | 1.954809e-50 |
| MsG0380015538.01 | MsG0380017140.01 | 0.817977 | 2.491760e-52 | 1.841595e-49 |
| MsG0380015538.01 | MsG0380017543.01 | 0.846197 | 2.526389e-59 | 4.314309e-56 |
| MsG0380015538.01 | MsG0380017551.01 | -0.807712 | 4.420641e-50 | 2.479854e-47 |
| MsG0380015538.01 | MsG0380017680.01 | 0.814029 | 1.896729e-51 | 1.258674e-48 |
| MsG0380015538.01 | MsG0380018009.01 | 0.808033 | 3.778857e-50 | 2.137684e-47 |
| MsG0380015538.01 | MsG0480018163.01 | 0.811403 | 7.123812e-51 | 4.405794e-48 |
| MsG0380015538.01 | MsG0480018778.01 | 0.802872 | 4.564580e-49 | 2.260845e-46 |
| MsG0380015538.01 | MsG0480018964.01 | 0.801185 | 1.014469e-48 | 4.813931e-46 |
| MsG0380015538.01 | MsG0480019434.01 | 0.805894 | 1.070769e-49 | 5.731764e-47 |
| MsG0380015538.01 | MsG0480020085.01 | 0.803447 | 3.471179e-49 | 1.744750e-46 |
| MsG0380015538.01 | MsG0480020447.01 | 0.827556 | 1.465431e-54 | 1.419520e-51 |
| MsG0380015538.01 | MsG0480021215.01 | 0.830794 | 2.402357e-55 | 2.557759e-52 |
| MsG0380015538.01 | MsG0480021274.01 | 0.801516 | 8.680147e-49 | 4.153471e-46 |
| MsG0380015538.01 | MsG0480021280.01 | 0.810648 | 1.038383e-50 | 6.294458e-48 |
| MsG0380015538.01 | MsG0480021451.01 | 0.821922 | 3.120224e-53 | 2.573467e-50 |
| MsG0380015538.01 | MsG0480021464.01 | 0.800145 | 1.653571e-48 | 7.642376e-46 |
| MsG0380015538.01 | MsG0480021465.01 | 0.820894 | 5.388672e-53 | 4.318338e-50 |
| MsG0380015538.01 | MsG0480021558.01 | 0.811084 | 8.353169e-51 | 5.122817e-48 |
| MsG0380015538.01 | MsG0480021959.01 | 0.829969 | 3.822027e-55 | 3.972661e-52 |
| MsG0380015538.01 | MsG0480021994.01 | 0.810123 | 1.347830e-50 | 8.057707e-48 |
| MsG0380015538.01 | MsG0480022052.01 | -0.813526 | 2.448202e-51 | 1.602670e-48 |
| MsG0380015538.01 | MsG0480022054.01 | 0.803132 | 4.032666e-49 | 2.010609e-46 |
| MsG0380015538.01 | MsG0480022222.01 | 0.818185 | 2.236323e-52 | 1.662359e-49 |
| MsG0380015538.01 | MsG0480023088.01 | 0.800213 | 1.601655e-48 | 7.415250e-46 |
| MsG0380015538.01 | MsG0480023835.01 | 0.807790 | 4.256006e-50 | 2.392349e-47 |
| MsG0380015538.01 | MsG0480023994.01 | 0.817078 | 3.973267e-52 | 2.865128e-49 |
| MsG0380015538.01 | MsG0480024005.01 | 0.818903 | 1.536962e-52 | 1.165450e-49 |
| MsG0380015538.01 | MsG0480024015.01 | 0.823305 | 1.487710e-53 | 1.276140e-50 |
| MsG0380015538.01 | MsG0580025022.01 | 0.806102 | 9.679812e-50 | 5.209136e-47 |
| MsG0380015538.01 | MsG0580025026.01 | 0.804207 | 2.413784e-49 | 1.237138e-46 |
| MsG0380015538.01 | MsG0580025448.01 | 0.823048 | 1.708467e-53 | 1.455023e-50 |
| MsG0380015538.01 | MsG0580025489.01 | 0.826471 | 2.664614e-54 | 2.501154e-51 |
| MsG0380015538.01 | MsG0580025638.01 | 0.816698 | 4.834955e-52 | 3.450355e-49 |
| MsG0380015538.01 | MsG0580025758.01 | 0.829583 | 4.746976e-55 | 4.878872e-52 |
| MsG0380015538.01 | MsG0580026086.01 | 0.825203 | 5.328541e-54 | 4.824658e-51 |
| MsG0380015538.01 | MsG0580026340.01 | 0.806126 | 9.570684e-50 | 5.153608e-47 |
| MsG0380015538.01 | MsG0580027152.01 | 0.812219 | 4.731886e-51 | 2.991120e-48 |
| MsG0380015538.01 | MsG0580027228.01 | 0.829623 | 4.642456e-55 | 4.777109e-52 |
| MsG0380015538.01 | MsG0580028991.01 | 0.802718 | 4.911900e-49 | 2.423381e-46 |
| MsG0380015538.01 | MsG0680030316.01 | 0.824255 | 8.910914e-54 | 7.851343e-51 |
| MsG0380015538.01 | MsG0680030413.01 | 0.802794 | 4.737509e-49 | 2.341900e-46 |
| MsG0380015538.01 | MsG0680030415.01 | 0.835274 | 1.845834e-56 | 2.246333e-53 |
| MsG0380015538.01 | MsG0680030886.01 | 0.801559 | 8.505596e-49 | 4.074273e-46 |
| MsG0380015538.01 | MsG0680031334.01 | 0.801448 | 8.961690e-49 | 4.280874e-46 |
| MsG0380015538.01 | MsG0680031505.01 | 0.813046 | 3.120715e-51 | 2.016299e-48 |
| MsG0380015538.01 | MsG0680031946.01 | 0.815903 | 7.282551e-52 | 5.085094e-49 |
| MsG0380015538.01 | MsG0680032157.01 | 0.801152 | 1.030541e-48 | 4.886236e-46 |
| MsG0380015538.01 | MsG0680033339.01 | 0.808059 | 3.730116e-50 | 2.111576e-47 |
| MsG0380015538.01 | MsG0680034190.01 | 0.800250 | 1.573977e-48 | 7.293958e-46 |
| MsG0380015538.01 | MsG0680034219.01 | 0.826790 | 2.235393e-54 | 2.117545e-51 |
| MsG0380015538.01 | MsG0680035346.01 | 0.810283 | 1.244646e-50 | 7.471785e-48 |
| MsG0380015538.01 | MsG0680035573.01 | 0.819016 | 1.449260e-52 | 1.102392e-49 |
| MsG0380015538.01 | MsG0780036719.01 | 0.806508 | 7.951382e-50 | 4.323500e-47 |
| MsG0380015538.01 | MsG0780038636.01 | 0.816009 | 6.894869e-52 | 4.828726e-49 |
| MsG0380015538.01 | MsG0780039143.01 | 0.843257 | 1.565621e-58 | 2.435655e-55 |
| MsG0380015538.01 | MsG0780039144.01 | 0.819975 | 8.758406e-53 | 6.841909e-50 |
| MsG0380015538.01 | MsG0780040545.01 | 0.803069 | 4.156570e-49 | 2.068959e-46 |
| MsG0380015538.01 | MsG0780040749.01 | 0.812118 | 4.978465e-51 | 3.138129e-48 |
| MsG0380015538.01 | MsG0780041065.01 | 0.829656 | 4.556193e-55 | 4.693147e-52 |
| MsG0380015538.01 | MsG0880042294.01 | 0.824628 | 7.282788e-54 | 6.487024e-51 |
| MsG0380015538.01 | MsG0880042404.01 | 0.807097 | 5.969128e-50 | 3.295268e-47 |
| MsG0380015538.01 | MsG0880042518.01 | 0.804309 | 2.297708e-49 | 1.180777e-46 |
| MsG0380015538.01 | MsG0880043172.01 | 0.804079 | 2.565697e-49 | 1.310784e-46 |
| MsG0380015538.01 | MsG0880043303.01 | 0.818372 | 2.028834e-52 | 1.516016e-49 |
| MsG0380015538.01 | MsG0880043454.01 | 0.803208 | 3.890746e-49 | 1.943645e-46 |
| MsG0380015538.01 | MsG0880043509.01 | 0.816801 | 4.584972e-52 | 3.281159e-49 |
| MsG0380015538.01 | MsG0880043591.01 | 0.827552 | 1.469345e-54 | 1.423139e-51 |
| MsG0380015538.01 | MsG0880044062.01 | -0.806170 | 9.369569e-50 | 5.051085e-47 |
| MsG0380015538.01 | MsG0880044455.01 | -0.806013 | 1.011033e-49 | 5.428579e-47 |
| MsG0380015538.01 | MsG0880045111.01 | 0.814435 | 1.542795e-51 | 1.035154e-48 |
| MsG0380015538.01 | MsG0880045362.01 | 0.800577 | 1.350005e-48 | 6.308245e-46 |
| MsG0380015538.01 | MsG0880045613.01 | 0.807286 | 5.444937e-50 | 3.020866e-47 |
| MsG0380015538.01 | MsG0880045653.01 | 0.809035 | 2.309079e-50 | 1.341167e-47 |
| MsG0380015538.01 | MsG0880045736.01 | 0.836617 | 8.423625e-57 | 1.067191e-53 |
| MsG0380015538.01 | MsG0880045937.01 | 0.811073 | 8.399616e-51 | 5.149689e-48 |
| MsG0380015538.01 | MsG0880047427.01 | 0.808204 | 3.473434e-50 | 1.973960e-47 |
| MsG0280007636.01 | MsG0380015538.01 | 0.818245 | 2.167179e-52 | 1.613525e-49 |
| MsG0280007815.01 | MsG0380015538.01 | 0.833679 | 4.644085e-56 | 5.386702e-53 |
| MsG0280008112.01 | MsG0380015538.01 | 0.813550 | 2.417898e-51 | 1.583875e-48 |
| MsG0280008114.01 | MsG0380015538.01 | 0.809048 | 2.294051e-50 | 1.332930e-47 |
| MsG0280008556.01 | MsG0380015538.01 | 0.800777 | 1.229374e-48 | 5.773529e-46 |
| MsG0280008615.01 | MsG0380015538.01 | 0.847485 | 1.122810e-59 | 1.998725e-56 |
| MsG0280008696.01 | MsG0380015538.01 | 0.805401 | 1.358971e-49 | 7.182884e-47 |
| MsG0280008970.01 | MsG0380015538.01 | 0.807591 | 4.690291e-50 | 2.622674e-47 |
| MsG0280008971.01 | MsG0380015538.01 | 0.827324 | 1.666174e-54 | 1.603323e-51 |
| MsG0280009024.01 | MsG0380015538.01 | 0.853698 | 2.011485e-61 | 4.383961e-58 |
| MsG0280009383.01 | MsG0380015538.01 | 0.805768 | 1.138147e-49 | 6.072967e-47 |
| MsG0280009421.01 | MsG0380015538.01 | 0.806829 | 6.802791e-50 | 3.729610e-47 |
| MsG0280010233.01 | MsG0380015538.01 | 0.820988 | 5.126917e-53 | 4.119589e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015538.01.T01 | MTR_3g072040 | 91.036 | 502 | 45 | 0 | 1 | 502 | 1 | 502 | 0.0 | 882 |
| MsG0380015538.01.T01 | MTR_3g072070 | 88.224 | 501 | 55 | 1 | 1 | 501 | 1 | 497 | 0.0 | 872 |
| MsG0380015538.01.T01 | MTR_5g083740 | 60.885 | 565 | 154 | 6 | 1 | 502 | 1 | 561 | 0.0 | 691 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015538.01.T01 | AT5G05350 | 52.632 | 532 | 197 | 7 | 15 | 501 | 4 | 525 | 0.0 | 544 |
| MsG0380015538.01.T01 | AT3G10980 | 56.117 | 515 | 193 | 7 | 10 | 491 | 8 | 522 | 0.0 | 543 |
Find 92 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTACTTTATGGTGGATTT+TGG | 0.168412 | 3:-71573423 | MsG0380015538.01.T01:CDS |
| TAAAGAGAGCAGTTAGTATT+TGG | 0.214526 | 3:+71574130 | None:intergenic |
| CCTGCCTATGAATTCTGTTT+TGG | 0.264166 | 3:-71573370 | MsG0380015538.01.T01:CDS |
| GCGAGTATCAATTTCTTTCA+TGG | 0.268302 | 3:+71573240 | None:intergenic |
| TCAATCTTCGGTTTCATCTT+TGG | 0.271411 | 3:-71573215 | MsG0380015538.01.T01:CDS |
| AGAATGATTTCAGTTGAAAA+TGG | 0.296753 | 3:-71574591 | MsG0380015538.01.T01:CDS |
| AGACAAGCACTAGTAGCTTT+TGG | 0.307010 | 3:-71573466 | MsG0380015538.01.T01:CDS |
| CAAAGAGAGTTTCGCAAATT+CGG | 0.311144 | 3:-71574456 | MsG0380015538.01.T01:CDS |
| GCCAATACAAATATCCAAAA+AGG | 0.315820 | 3:+71573517 | None:intergenic |
| GATAATTTGTGTCGCAGTAT+CGG | 0.345803 | 3:-71574241 | MsG0380015538.01.T01:CDS |
| CACAAATTATCCACGCGAAA+AGG | 0.352151 | 3:+71574253 | None:intergenic |
| GCGAAAAGGGCCATGTTCAT+TGG | 0.352594 | 3:+71574267 | None:intergenic |
| ACAAGATGGTGGAACCTCTT+TGG | 0.367747 | 3:+71574084 | None:intergenic |
| GTGGAGGAATACTTGACATT+TGG | 0.370062 | 3:-71573666 | MsG0380015538.01.T01:CDS |
| ATAATTTGTGTCGCAGTATC+GGG | 0.373267 | 3:-71574240 | MsG0380015538.01.T01:CDS |
| CACTTTGGTTATGCTGTTGT+TGG | 0.374184 | 3:-71573324 | MsG0380015538.01.T01:CDS |
| AACACGGAGAGACTTGGATT+TGG | 0.375866 | 3:-71573586 | MsG0380015538.01.T01:CDS |
| ACACGGAGAGACTTGGATTT+GGG | 0.383162 | 3:-71573585 | MsG0380015538.01.T01:CDS |
| TCGTACTGAAACGCGACTTC+AGG | 0.390858 | 3:+71574352 | None:intergenic |
| CGAAAAGGGCCATGTTCATT+GGG | 0.396383 | 3:+71574268 | None:intergenic |
| TGATACTCGCGATCAATCTT+CGG | 0.414648 | 3:-71573227 | MsG0380015538.01.T01:CDS |
| ATCCATTGCAATTGCGGCAC+CGG | 0.421783 | 3:-71573854 | MsG0380015538.01.T01:CDS |
| TGGGAATAGTTATGATCTCT+TGG | 0.424346 | 3:-71573275 | MsG0380015538.01.T01:CDS |
| GATGAAATTGAAGAATCTAA+TGG | 0.427177 | 3:-71574552 | MsG0380015538.01.T01:CDS |
| AATTTGCGAAACTCTCTTTG+AGG | 0.428112 | 3:+71574459 | None:intergenic |
| CTTCGGTTTCATCTTTGGCC+AGG | 0.429071 | 3:-71573210 | MsG0380015538.01.T01:CDS |
| TAGATTCTTCAATTTCATCT+TGG | 0.431953 | 3:+71574556 | None:intergenic |
| ATGAAATTGAAGAATCTAAT+GGG | 0.435270 | 3:-71574551 | MsG0380015538.01.T01:CDS |
| ACAAATTATCCACGCGAAAA+GGG | 0.436686 | 3:+71574254 | None:intergenic |
| TCTCTTGAAAGAGGTAAAGA+TGG | 0.441075 | 3:-71573151 | MsG0380015538.01.T01:CDS |
| ATTGCGGCACCGGCAATAGC+TGG | 0.441787 | 3:-71573844 | MsG0380015538.01.T01:CDS |
| AGACGTAGTATCAAGCAAAT+CGG | 0.449576 | 3:-71573185 | MsG0380015538.01.T01:CDS |
| TGCATTAATAATGCTATTGG+TGG | 0.454360 | 3:+71573118 | None:intergenic |
| CACTTTCTGATTGCACACTT+TGG | 0.460830 | 3:-71573339 | MsG0380015538.01.T01:CDS |
| CTAAGTGTAGAAATATCATT+TGG | 0.467163 | 3:+71574042 | None:intergenic |
| TACTTCTAAGCCTCATGAAT+GGG | 0.475316 | 3:-71573998 | MsG0380015538.01.T01:CDS |
| AATAACAAGGTCCTTGACTT+TGG | 0.476356 | 3:+71574422 | None:intergenic |
| TACTATATCCATTGCAATTG+CGG | 0.478786 | 3:-71573860 | MsG0380015538.01.T01:CDS |
| ATTCTGTTCTTGGTCATGAC+AGG | 0.480176 | 3:-71574213 | MsG0380015538.01.T01:CDS |
| GTGTACAATCCAGCTATTGC+CGG | 0.481203 | 3:+71573835 | None:intergenic |
| CCAAAACAGAATTCATAGGC+AGG | 0.481912 | 3:+71573370 | None:intergenic |
| GTACTTCTAAGCCTCATGAA+TGG | 0.482343 | 3:-71573999 | MsG0380015538.01.T01:CDS |
| GAGAGACCAGCCATTGGAAT+GGG | 0.484326 | 3:-71573886 | MsG0380015538.01.T01:CDS |
| TTGGTCTTTGAAAGGAAAAG+AGG | 0.487032 | 3:-71573083 | MsG0380015538.01.T01:CDS |
| GGAGGATTCAAATGAGAAAG+AGG | 0.488208 | 3:-71573402 | MsG0380015538.01.T01:CDS |
| GACGTAGTATCAAGCAAATC+GGG | 0.492971 | 3:-71573184 | MsG0380015538.01.T01:CDS |
| TGTTTACTCAGAAACTTGAA+TGG | 0.494775 | 3:-71574329 | MsG0380015538.01.T01:CDS |
| TACACTATTCTTAGTCCACT+TGG | 0.499459 | 3:-71573817 | MsG0380015538.01.T01:CDS |
| GGATGGAACACGGAGAGACT+TGG | 0.502674 | 3:-71573592 | MsG0380015538.01.T01:CDS |
| TATTCTTAGTCCACTTGGTA+AGG | 0.506159 | 3:-71573812 | MsG0380015538.01.T01:CDS |
| GCTTGATACTACGTCTTCCC+TGG | 0.506191 | 3:+71573192 | None:intergenic |
| TCAAGTTCTTCTCTTGAAAG+AGG | 0.506757 | 3:-71573160 | MsG0380015538.01.T01:CDS |
| GTAATTCCCATTCCAATGGC+TGG | 0.508656 | 3:+71573880 | None:intergenic |
| CAAAGTCTGAGAGGAATACA+TGG | 0.514332 | 3:-71574167 | MsG0380015538.01.T01:CDS |
| TGAGAGACCAGCCATTGGAA+TGG | 0.520372 | 3:-71573887 | MsG0380015538.01.T01:CDS |
| TCATGAATGGGCACATATGA+TGG | 0.522171 | 3:-71573986 | MsG0380015538.01.T01:CDS |
| TAATTTGTGTCGCAGTATCG+GGG | 0.522273 | 3:-71574239 | MsG0380015538.01.T01:CDS |
| GAAGCTCCTTGGTCTTTGAA+AGG | 0.526045 | 3:-71573091 | MsG0380015538.01.T01:CDS |
| CTTGCTCAAGAAGCTAGGAC+TGG | 0.530532 | 3:-71573295 | MsG0380015538.01.T01:CDS |
| AGGCTATCGGAATGCGGAGA+AGG | 0.530642 | 3:+71574372 | None:intergenic |
| GCTCTCTTGCTCAAGAAGCT+AGG | 0.535522 | 3:-71573300 | MsG0380015538.01.T01:CDS |
| TCAAGAAAATGTGCATGGAA+TGG | 0.536746 | 3:-71574299 | MsG0380015538.01.T01:CDS |
| CAAGGACCTTGTTATTGCAA+AGG | 0.538563 | 3:-71574415 | MsG0380015538.01.T01:CDS |
| TGCCGGTGCCGCAATTGCAA+TGG | 0.549352 | 3:+71573852 | None:intergenic |
| TGAGATAGATGAAGAATCAC+AGG | 0.556709 | 3:-71573779 | MsG0380015538.01.T01:CDS |
| CAAATGATATTTCTACACTT+AGG | 0.557086 | 3:-71574041 | MsG0380015538.01.T01:CDS |
| TGGTCTTTGAAAGGAAAAGA+GGG | 0.564833 | 3:-71573082 | MsG0380015538.01.T01:CDS |
| TTCTGAATCTGCCAAAGTCA+AGG | 0.566803 | 3:-71574433 | MsG0380015538.01.T01:CDS |
| AGATCTGAGAGACCAGCCAT+TGG | 0.567138 | 3:-71573892 | MsG0380015538.01.T01:CDS |
| TTCAGTCAAGAAAATGTGCA+TGG | 0.567486 | 3:-71574304 | MsG0380015538.01.T01:CDS |
| GAAAATAGACCGACTTGGAG+TGG | 0.567494 | 3:-71573685 | MsG0380015538.01.T01:CDS |
| TTCGGTTTCATCTTTGGCCA+GGG | 0.567751 | 3:-71573209 | MsG0380015538.01.T01:CDS |
| TTGCTTGGAAATGTTTGTGT+AGG | 0.571611 | 3:+71574489 | None:intergenic |
| TTGCTCAAGAAGCTAGGACT+GGG | 0.573190 | 3:-71573294 | MsG0380015538.01.T01:CDS |
| GAGCAAAACAGTTAACATGA+AGG | 0.581446 | 3:+71573950 | None:intergenic |
| TATAGTAATTCCCATTCCAA+TGG | 0.587220 | 3:+71573876 | None:intergenic |
| GTTTGTATCATCATCCAAAG+AGG | 0.587810 | 3:-71574098 | MsG0380015538.01.T01:CDS |
| ATCATATGTGCCCATTCATG+AGG | 0.605734 | 3:+71573988 | None:intergenic |
| AATTTGTGTCGCAGTATCGG+GGG | 0.611161 | 3:-71574238 | MsG0380015538.01.T01:CDS |
| ATCTACACAAAAGAACAAGA+TGG | 0.615921 | 3:+71574070 | None:intergenic |
| TTATAGAAAATAGACCGACT+TGG | 0.620188 | 3:-71573690 | MsG0380015538.01.T01:CDS |
| CAATAATAGTCCTTACCAAG+TGG | 0.625627 | 3:+71573802 | None:intergenic |
| TCTGATCCTTTGCAATAACA+AGG | 0.625650 | 3:+71574409 | None:intergenic |
| GAAACGCGACTTCAGGCTAT+CGG | 0.628998 | 3:+71574359 | None:intergenic |
| TTGTGTGTTTGGATGGAACA+CGG | 0.631821 | 3:-71573602 | MsG0380015538.01.T01:CDS |
| TACACAAAAGAACAAGATGG+TGG | 0.645734 | 3:+71574073 | None:intergenic |
| GACTTCAGGCTATCGGAATG+CGG | 0.648074 | 3:+71574366 | None:intergenic |
| AATAGACCGACTTGGAGTGG+AGG | 0.653272 | 3:-71573682 | MsG0380015538.01.T01:CDS |
| AGTATTCCTCCACTCCAAGT+CGG | 0.656394 | 3:+71573676 | None:intergenic |
| AGTGTGCAATCAGAAAGTGA+TGG | 0.707350 | 3:+71573343 | None:intergenic |
| GTATCGAAAGATCAACAAGG+AGG | 0.754625 | 3:-71573715 | MsG0380015538.01.T01:CDS |
| TTTGTATCGAAAGATCAACA+AGG | 0.776286 | 3:-71573718 | MsG0380015538.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAATTGAAGAATCTAAT+GGG | - | Chr3:71573103-71573122 | MsG0380015538.01.T01:CDS | 20.0% |
| !!! | TACATTTATGTTGTTTTGTA+TGG | - | Chr3:71574112-71574131 | MsG0380015538.01.T01:CDS | 20.0% |
| !!! | TTTTGCATTAATAATGCTAT+TGG | + | Chr3:71574542-71574561 | None:intergenic | 20.0% |
| ! | CTAAGTGTAGAAATATCATT+TGG | + | Chr3:71573615-71573634 | None:intergenic | 25.0% |
| ! | GATGAAATTGAAGAATCTAA+TGG | - | Chr3:71573102-71573121 | MsG0380015538.01.T01:CDS | 25.0% |
| ! | TAGATTCTTCAATTTCATCT+TGG | + | Chr3:71573101-71573120 | None:intergenic | 25.0% |
| !! | CAAATGATATTTCTACACTT+AGG | - | Chr3:71573613-71573632 | MsG0380015538.01.T01:CDS | 25.0% |
| !! | TCCTTTTTGGATATTTGTAT+TGG | - | Chr3:71574136-71574155 | MsG0380015538.01.T01:CDS | 25.0% |
| !! | TTTTCCAAAACAGAATTCAT+AGG | + | Chr3:71574291-71574310 | None:intergenic | 25.0% |
| !!! | TGTTTTTGTGGTTTACTTTA+TGG | - | Chr3:71574221-71574240 | MsG0380015538.01.T01:CDS | 25.0% |
| AGGATGATTTACTGCAAAAA+TGG | - | Chr3:71573633-71573652 | MsG0380015538.01.T01:CDS | 30.0% | |
| ATCTACACAAAAGAACAAGA+TGG | + | Chr3:71573587-71573606 | None:intergenic | 30.0% | |
| GCCAATACAAATATCCAAAA+AGG | + | Chr3:71574140-71574159 | None:intergenic | 30.0% | |
| TAAAGAGAGCAGTTAGTATT+TGG | + | Chr3:71573527-71573546 | None:intergenic | 30.0% | |
| TACTATATCCATTGCAATTG+CGG | - | Chr3:71573794-71573813 | MsG0380015538.01.T01:CDS | 30.0% | |
| TATAGTAATTCCCATTCCAA+TGG | + | Chr3:71573781-71573800 | None:intergenic | 30.0% | |
| TGCATTAATAATGCTATTGG+TGG | + | Chr3:71574539-71574558 | None:intergenic | 30.0% | |
| TGTTTACTCAGAAACTTGAA+TGG | - | Chr3:71573325-71573344 | MsG0380015538.01.T01:CDS | 30.0% | |
| TTATAGAAAATAGACCGACT+TGG | - | Chr3:71573964-71573983 | MsG0380015538.01.T01:CDS | 30.0% | |
| TTTGTATCGAAAGATCAACA+AGG | - | Chr3:71573936-71573955 | MsG0380015538.01.T01:CDS | 30.0% | |
| ! | ATCTTGTTCTTTTGTGTAGA+TGG | - | Chr3:71573586-71573605 | MsG0380015538.01.T01:CDS | 30.0% |
| ! | TTTTGTGGTTTACTTTATGG+TGG | - | Chr3:71574224-71574243 | MsG0380015538.01.T01:CDS | 30.0% |
| !! | GCACTTTTTAGTCTAAATGT+AGG | - | Chr3:71573732-71573751 | MsG0380015538.01.T01:CDS | 30.0% |
| !!! | GGAATCATTCTTTGTTTTTG+TGG | - | Chr3:71574209-71574228 | MsG0380015538.01.T01:CDS | 30.0% |
| !!! | GTTTACTTTATGGTGGATTT+TGG | - | Chr3:71574231-71574250 | MsG0380015538.01.T01:CDS | 30.0% |
| AATAACAAGGTCCTTGACTT+TGG | + | Chr3:71573235-71573254 | None:intergenic | 35.0% | |
| AATTTGCGAAACTCTCTTTG+AGG | + | Chr3:71573198-71573217 | None:intergenic | 35.0% | |
| ACAAATTATCCACGCGAAAA+GGG | + | Chr3:71573403-71573422 | None:intergenic | 35.0% | |
| AGACGTAGTATCAAGCAAAT+CGG | - | Chr3:71574469-71574488 | MsG0380015538.01.T01:CDS | 35.0% | |
| CAAAGAGAGTTTCGCAAATT+CGG | - | Chr3:71573198-71573217 | MsG0380015538.01.T01:CDS | 35.0% | |
| CAATAATAGTCCTTACCAAG+TGG | + | Chr3:71573855-71573874 | None:intergenic | 35.0% | |
| GAGCAAAACAGTTAACATGA+AGG | + | Chr3:71573707-71573726 | None:intergenic | 35.0% | |
| GATCAAAAACCCAATGAACA+TGG | - | Chr3:71573377-71573396 | MsG0380015538.01.T01:CDS | 35.0% | |
| GCGAGTATCAATTTCTTTCA+TGG | + | Chr3:71574417-71574436 | None:intergenic | 35.0% | |
| GTTTGTATCATCATCCAAAG+AGG | - | Chr3:71573556-71573575 | MsG0380015538.01.T01:CDS | 35.0% | |
| TAATGCAAAAAGAAGCTCCT+TGG | - | Chr3:71574552-71574571 | MsG0380015538.01.T01:CDS | 35.0% | |
| TACACAAAAGAACAAGATGG+TGG | + | Chr3:71573584-71573603 | None:intergenic | 35.0% | |
| TACACTATTCTTAGTCCACT+TGG | - | Chr3:71573837-71573856 | MsG0380015538.01.T01:CDS | 35.0% | |
| TACTTCTAAGCCTCATGAAT+GGG | - | Chr3:71573656-71573675 | MsG0380015538.01.T01:CDS | 35.0% | |
| TATTCTTAGTCCACTTGGTA+AGG | - | Chr3:71573842-71573861 | MsG0380015538.01.T01:CDS | 35.0% | |
| TCAAGAAAATGTGCATGGAA+TGG | - | Chr3:71573355-71573374 | MsG0380015538.01.T01:CDS | 35.0% | |
| TCAAGTTCTTCTCTTGAAAG+AGG | - | Chr3:71574494-71574513 | MsG0380015538.01.T01:CDS | 35.0% | |
| TCAATCTTCGGTTTCATCTT+TGG | - | Chr3:71574439-71574458 | MsG0380015538.01.T01:CDS | 35.0% | |
| TCTCTTGAAAGAGGTAAAGA+TGG | - | Chr3:71574503-71574522 | MsG0380015538.01.T01:CDS | 35.0% | |
| TCTGATCCTTTGCAATAACA+AGG | + | Chr3:71573248-71573267 | None:intergenic | 35.0% | |
| TGAGATAGATGAAGAATCAC+AGG | - | Chr3:71573875-71573894 | MsG0380015538.01.T01:CDS | 35.0% | |
| TGCTAAAAACAAAGTCTGAG+AGG | - | Chr3:71573478-71573497 | MsG0380015538.01.T01:CDS | 35.0% | |
| TGGGAATAGTTATGATCTCT+TGG | - | Chr3:71574379-71574398 | MsG0380015538.01.T01:CDS | 35.0% | |
| TTCAGTCAAGAAAATGTGCA+TGG | - | Chr3:71573350-71573369 | MsG0380015538.01.T01:CDS | 35.0% | |
| TTGCTTGGAAATGTTTGTGT+AGG | + | Chr3:71573168-71573187 | None:intergenic | 35.0% | |
| ! | ATAATTTGTGTCGCAGTATC+GGG | - | Chr3:71573414-71573433 | MsG0380015538.01.T01:CDS | 35.0% |
| ! | GATAATTTGTGTCGCAGTAT+CGG | - | Chr3:71573413-71573432 | MsG0380015538.01.T01:CDS | 35.0% |
| ! | TCTTTTCCTTTCAAAGACCA+AGG | + | Chr3:71574572-71574591 | None:intergenic | 35.0% |
| ! | TGGTCTTTGAAAGGAAAAGA+GGG | - | Chr3:71574572-71574591 | MsG0380015538.01.T01:CDS | 35.0% |
| ! | TGTTTTGTATGGCTCCTTTT+TGG | - | Chr3:71574123-71574142 | MsG0380015538.01.T01:CDS | 35.0% |
| ! | TTCTGCTCTTTTTGTGTGTT+TGG | - | Chr3:71574041-71574060 | MsG0380015538.01.T01:CDS | 35.0% |
| ! | TTGGTCTTTGAAAGGAAAAG+AGG | - | Chr3:71574571-71574590 | MsG0380015538.01.T01:CDS | 35.0% |
| !! | CTTTGAGGATTTTCATTGCT+TGG | + | Chr3:71573183-71573202 | None:intergenic | 35.0% |
| !!! | AACGCGTATTTTTTCTCGAA+TGG | + | Chr3:71573918-71573937 | None:intergenic | 35.0% |
| !!! | TACTTTATGGTGGATTTTGG+AGG | - | Chr3:71574234-71574253 | MsG0380015538.01.T01:CDS | 35.0% |
| AGTGTGCAATCAGAAAGTGA+TGG | + | Chr3:71574314-71574333 | None:intergenic | 40.0% | |
| ATCATATGTGCCCATTCATG+AGG | + | Chr3:71573669-71573688 | None:intergenic | 40.0% | |
| ATTCTGTTCTTGGTCATGAC+AGG | - | Chr3:71573441-71573460 | MsG0380015538.01.T01:CDS | 40.0% | |
| CAAAGTCTGAGAGGAATACA+TGG | - | Chr3:71573487-71573506 | MsG0380015538.01.T01:CDS | 40.0% | |
| CACAAATTATCCACGCGAAA+AGG | + | Chr3:71573404-71573423 | None:intergenic | 40.0% | |
| CACTTTCTGATTGCACACTT+TGG | - | Chr3:71574315-71574334 | MsG0380015538.01.T01:CDS | 40.0% | |
| CACTTTGGTTATGCTGTTGT+TGG | - | Chr3:71574330-71574349 | MsG0380015538.01.T01:CDS | 40.0% | |
| CCAAAACAGAATTCATAGGC+AGG | + | Chr3:71574287-71574306 | None:intergenic | 40.0% | |
| GACGTAGTATCAAGCAAATC+GGG | - | Chr3:71574470-71574489 | MsG0380015538.01.T01:CDS | 40.0% | |
| GGAGGATTCAAATGAGAAAG+AGG | - | Chr3:71574252-71574271 | MsG0380015538.01.T01:CDS | 40.0% | |
| GTACTTCTAAGCCTCATGAA+TGG | - | Chr3:71573655-71573674 | MsG0380015538.01.T01:CDS | 40.0% | |
| GTATCGAAAGATCAACAAGG+AGG | - | Chr3:71573939-71573958 | MsG0380015538.01.T01:CDS | 40.0% | |
| GTGGAGGAATACTTGACATT+TGG | - | Chr3:71573988-71574007 | MsG0380015538.01.T01:CDS | 40.0% | |
| TCATGAATGGGCACATATGA+TGG | - | Chr3:71573668-71573687 | MsG0380015538.01.T01:CDS | 40.0% | |
| TGATACTCGCGATCAATCTT+CGG | - | Chr3:71574427-71574446 | MsG0380015538.01.T01:CDS | 40.0% | |
| TTCTGAATCTGCCAAAGTCA+AGG | - | Chr3:71573221-71573240 | MsG0380015538.01.T01:CDS | 40.0% | |
| TTGTGTGTTTGGATGGAACA+CGG | - | Chr3:71574052-71574071 | MsG0380015538.01.T01:CDS | 40.0% | |
| ! | AGACAAGCACTAGTAGCTTT+TGG | - | Chr3:71574188-71574207 | MsG0380015538.01.T01:CDS | 40.0% |
| ! | CCTGCCTATGAATTCTGTTT+TGG | - | Chr3:71574284-71574303 | MsG0380015538.01.T01:CDS | 40.0% |
| ! | GCTCTTTTTGTGTGTTTGGA+TGG | - | Chr3:71574045-71574064 | MsG0380015538.01.T01:CDS | 40.0% |
| ! | TAATTTGTGTCGCAGTATCG+GGG | - | Chr3:71573415-71573434 | MsG0380015538.01.T01:CDS | 40.0% |
| !! | CAAGGACCTTGTTATTGCAA+AGG | - | Chr3:71573239-71573258 | MsG0380015538.01.T01:CDS | 40.0% |
| AACACGGAGAGACTTGGATT+TGG | - | Chr3:71574068-71574087 | MsG0380015538.01.T01:CDS | 45.0% | |
| ACACGGAGAGACTTGGATTT+GGG | - | Chr3:71574069-71574088 | MsG0380015538.01.T01:CDS | 45.0% | |
| AGTATTCCTCCACTCCAAGT+CGG | + | Chr3:71573981-71574000 | None:intergenic | 45.0% | |
| CGAAAAGGGCCATGTTCATT+GGG | + | Chr3:71573389-71573408 | None:intergenic | 45.0% | |
| GTAATTCCCATTCCAATGGC+TGG | + | Chr3:71573777-71573796 | None:intergenic | 45.0% | |
| GTGTACAATCCAGCTATTGC+CGG | + | Chr3:71573822-71573841 | None:intergenic | 45.0% | |
| TTCGGTTTCATCTTTGGCCA+GGG | - | Chr3:71574445-71574464 | MsG0380015538.01.T01:CDS | 45.0% | |
| TTGCTCAAGAAGCTAGGACT+GGG | - | Chr3:71574360-71574379 | MsG0380015538.01.T01:CDS | 45.0% | |
| ! | AATTTGTGTCGCAGTATCGG+GGG | - | Chr3:71573416-71573435 | MsG0380015538.01.T01:CDS | 45.0% |
| ! | GAAGCTCCTTGGTCTTTGAA+AGG | - | Chr3:71574563-71574582 | MsG0380015538.01.T01:CDS | 45.0% |
| !! | ACAAGATGGTGGAACCTCTT+TGG | + | Chr3:71573573-71573592 | None:intergenic | 45.0% |
| !! | GAAAATAGACCGACTTGGAG+TGG | - | Chr3:71573969-71573988 | MsG0380015538.01.T01:CDS | 45.0% |
| AGATCTGAGAGACCAGCCAT+TGG | - | Chr3:71573762-71573781 | MsG0380015538.01.T01:CDS | 50.0% | |
| ATCCATTGCAATTGCGGCAC+CGG | - | Chr3:71573800-71573819 | MsG0380015538.01.T01:CDS | 50.0% | |
| CTTCGGTTTCATCTTTGGCC+AGG | - | Chr3:71574444-71574463 | MsG0380015538.01.T01:CDS | 50.0% | |
| CTTGCTCAAGAAGCTAGGAC+TGG | - | Chr3:71574359-71574378 | MsG0380015538.01.T01:CDS | 50.0% | |
| GAAACGCGACTTCAGGCTAT+CGG | + | Chr3:71573298-71573317 | None:intergenic | 50.0% | |
| GACTTCAGGCTATCGGAATG+CGG | + | Chr3:71573291-71573310 | None:intergenic | 50.0% | |
| GAGAGACCAGCCATTGGAAT+GGG | - | Chr3:71573768-71573787 | MsG0380015538.01.T01:CDS | 50.0% | |
| GCGAAAAGGGCCATGTTCAT+TGG | + | Chr3:71573390-71573409 | None:intergenic | 50.0% | |
| GCTCTCTTGCTCAAGAAGCT+AGG | - | Chr3:71574354-71574373 | MsG0380015538.01.T01:CDS | 50.0% | |
| GCTTGATACTACGTCTTCCC+TGG | + | Chr3:71574465-71574484 | None:intergenic | 50.0% | |
| TCGTACTGAAACGCGACTTC+AGG | + | Chr3:71573305-71573324 | None:intergenic | 50.0% | |
| TGAGAGACCAGCCATTGGAA+TGG | - | Chr3:71573767-71573786 | MsG0380015538.01.T01:CDS | 50.0% | |
| !! | AATAGACCGACTTGGAGTGG+AGG | - | Chr3:71573972-71573991 | MsG0380015538.01.T01:CDS | 50.0% |
| AGGCTATCGGAATGCGGAGA+AGG | + | Chr3:71573285-71573304 | None:intergenic | 55.0% | |
| ATCGGGGGCGATTCTGTTCT+TGG | - | Chr3:71573431-71573450 | MsG0380015538.01.T01:CDS | 55.0% | |
| GGATGGAACACGGAGAGACT+TGG | - | Chr3:71574062-71574081 | MsG0380015538.01.T01:CDS | 55.0% | |
| ! | TGAACATGGCCCTTTTCGCG+TGG | - | Chr3:71573391-71573410 | MsG0380015538.01.T01:CDS | 55.0% |
| !! | ATTGCGGCACCGGCAATAGC+TGG | - | Chr3:71573810-71573829 | MsG0380015538.01.T01:CDS | 60.0% |
| !! | TGCCGGTGCCGCAATTGCAA+TGG | + | Chr3:71573805-71573824 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 71573066 | 71574610 | 71573066 | ID=MsG0380015538.01;Name=MsG0380015538.01 |
| Chr3 | mRNA | 71573066 | 71574610 | 71573066 | ID=MsG0380015538.01.T01;Parent=MsG0380015538.01;Name=MsG0380015538.01.T01;_AED=0.40;_eAED=0.40;_QI=0|-1|0|1|-1|1|1|0|514 |
| Chr3 | exon | 71573066 | 71574610 | 71573066 | ID=MsG0380015538.01.T01:exon:626;Parent=MsG0380015538.01.T01 |
| Chr3 | CDS | 71573066 | 71574610 | 71573066 | ID=MsG0380015538.01.T01:cds;Parent=MsG0380015538.01.T01 |
| Gene Sequence |
| Protein sequence |
