Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021704.01.T01 | XP_024638782.1 | 96.226 | 106 | 4 | 0 | 45 | 150 | 181 | 286 | 8.82E-63 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047815.01 | MsG0480021704.01 | 0.811839 | 5.728812e-51 | 3.583832e-48 |
| MsG0080048797.01 | MsG0480021704.01 | 0.848552 | 5.700751e-60 | 1.050019e-56 |
| MsG0180001293.01 | MsG0480021704.01 | 0.807755 | 4.328549e-50 | 2.430913e-47 |
| MsG0180001719.01 | MsG0480021704.01 | 0.812797 | 3.538112e-51 | 2.270761e-48 |
| MsG0180002217.01 | MsG0480021704.01 | 0.801626 | 8.240699e-49 | 3.953992e-46 |
| MsG0180002218.01 | MsG0480021704.01 | 0.809561 | 1.780446e-50 | 1.048797e-47 |
| MsG0180003857.01 | MsG0480021704.01 | 0.832634 | 8.451894e-56 | 9.502281e-53 |
| MsG0180003905.01 | MsG0480021704.01 | 0.802483 | 5.490704e-49 | 2.692710e-46 |
| MsG0180004120.01 | MsG0480021704.01 | 0.867786 | 1.058381e-65 | 3.740740e-62 |
| MsG0180004471.01 | MsG0480021704.01 | 0.803493 | 3.396312e-49 | 1.709154e-46 |
| MsG0180004538.01 | MsG0480021704.01 | 0.853389 | 2.468743e-61 | 5.325463e-58 |
| MsG0180004583.01 | MsG0480021704.01 | 0.869017 | 4.242674e-66 | 1.567632e-62 |
| MsG0180005048.01 | MsG0480021704.01 | 0.825820 | 3.805659e-54 | 3.506853e-51 |
| MsG0180005655.01 | MsG0480021704.01 | 0.804232 | 2.385036e-49 | 1.223161e-46 |
| MsG0180006133.01 | MsG0480021704.01 | 0.838692 | 2.473265e-57 | 3.338469e-54 |
| MsG0380012956.01 | MsG0480021704.01 | 0.801457 | 8.922485e-49 | 4.263075e-46 |
| MsG0380014542.01 | MsG0480021704.01 | 0.836811 | 7.518442e-57 | 9.581917e-54 |
| MsG0380014544.01 | MsG0480021704.01 | 0.804473 | 2.124346e-49 | 1.096268e-46 |
| MsG0380014666.01 | MsG0480021704.01 | 0.861293 | 1.135809e-63 | 3.198425e-60 |
| MsG0480019601.01 | MsG0480021704.01 | 0.800667 | 1.294073e-48 | 6.060818e-46 |
| MsG0480020398.01 | MsG0480021704.01 | 0.866278 | 3.205549e-65 | 1.074333e-61 |
| MsG0480020926.01 | MsG0480021704.01 | 0.807227 | 5.601997e-50 | 3.103196e-47 |
| MsG0480020937.01 | MsG0480021704.01 | 0.817449 | 3.278368e-52 | 2.388301e-49 |
| MsG0480020970.01 | MsG0480021704.01 | 0.817629 | 2.986131e-52 | 2.186027e-49 |
| MsG0480021100.01 | MsG0480021704.01 | 0.842227 | 2.941774e-58 | 4.430486e-55 |
| MsG0480021301.01 | MsG0480021704.01 | 0.861951 | 7.150451e-64 | 2.058669e-60 |
| MsG0480021456.01 | MsG0480021704.01 | 0.801492 | 8.779441e-49 | 4.198463e-46 |
| MsG0480021704.01 | MsG0480021773.01 | 0.848401 | 6.274165e-60 | 1.150059e-56 |
| MsG0480021704.01 | MsG0480021902.01 | 0.847638 | 1.018875e-59 | 1.822605e-56 |
| MsG0480021704.01 | MsG0480022307.01 | 0.869809 | 2.344596e-66 | 8.915392e-63 |
| MsG0480021704.01 | MsG0480022784.01 | 0.813934 | 1.990857e-51 | 1.317649e-48 |
| MsG0480021704.01 | MsG0480023424.01 | 0.847373 | 1.204652e-59 | 2.136703e-56 |
| MsG0480021704.01 | MsG0480023426.01 | 0.872656 | 2.688668e-67 | 1.134256e-63 |
| MsG0480021704.01 | MsG0480023428.01 | 0.832845 | 7.493827e-56 | 8.477752e-53 |
| MsG0480021704.01 | MsG0480023706.01 | 0.835283 | 1.836665e-56 | 2.235731e-53 |
| MsG0480021704.01 | MsG0480023842.01 | 0.865900 | 4.221813e-65 | 1.396270e-61 |
| MsG0480021704.01 | MsG0480024002.01 | 0.805525 | 1.280182e-49 | 6.787716e-47 |
| MsG0480021704.01 | MsG0480024019.01 | 0.840852 | 6.773925e-58 | 9.773984e-55 |
| MsG0480021704.01 | MsG0580024276.01 | 0.863315 | 2.718031e-64 | 8.204861e-61 |
| MsG0480021704.01 | MsG0580025177.01 | 0.801173 | 1.020178e-48 | 4.839568e-46 |
| MsG0480021704.01 | MsG0580025504.01 | 0.886413 | 3.495085e-72 | 2.494100e-68 |
| MsG0480021704.01 | MsG0580028927.01 | 0.814735 | 1.324331e-51 | 8.957653e-49 |
| MsG0480021704.01 | MsG0580028955.01 | 0.877955 | 4.146336e-69 | 2.125979e-65 |
| MsG0480021704.01 | MsG0680030958.01 | 0.807268 | 5.492873e-50 | 3.045994e-47 |
| MsG0480021704.01 | MsG0680035350.01 | 0.808252 | 3.393026e-50 | 1.930685e-47 |
| MsG0480021704.01 | MsG0680035776.01 | 0.810564 | 1.082843e-50 | 6.549088e-48 |
| MsG0480021704.01 | MsG0680035792.01 | 0.814977 | 1.170270e-51 | 7.967395e-49 |
| MsG0480021704.01 | MsG0780036534.01 | 0.830299 | 3.175746e-55 | 3.332303e-52 |
| MsG0480021704.01 | MsG0780038642.01 | 0.813140 | 2.975766e-51 | 1.927476e-48 |
| MsG0480021704.01 | MsG0780038736.01 | 0.848992 | 4.303788e-60 | 8.041827e-57 |
| MsG0480021704.01 | MsG0780040641.01 | 0.821128 | 4.759286e-53 | 3.838881e-50 |
| MsG0480021704.01 | MsG0780040899.01 | 0.837332 | 5.532953e-57 | 7.163472e-54 |
| MsG0480021704.01 | MsG0780041219.01 | 0.800952 | 1.131941e-48 | 5.340023e-46 |
| MsG0480021704.01 | MsG0780041273.01 | 0.853193 | 2.808523e-61 | 6.018810e-58 |
| MsG0480021704.01 | MsG0780041359.01 | 0.812789 | 3.552082e-51 | 2.279297e-48 |
| MsG0480021704.01 | MsG0880044437.01 | 0.822073 | 2.879632e-53 | 2.385081e-50 |
| MsG0480021704.01 | MsG0880045015.01 | 0.850947 | 1.221442e-60 | 2.433018e-57 |
| MsG0480021704.01 | MsG0880045356.01 | 0.802045 | 6.759596e-49 | 3.278117e-46 |
| MsG0480021704.01 | MsG0880045612.01 | 0.812345 | 4.441841e-51 | 2.817299e-48 |
| MsG0480021704.01 | MsG0880045647.01 | 0.831037 | 2.094201e-55 | 2.245626e-52 |
| MsG0480021704.01 | MsG0880046904.01 | 0.832866 | 7.401512e-56 | 8.379214e-53 |
| MsG0480021704.01 | MsG0880046905.01 | 0.866498 | 2.729549e-65 | 9.219154e-62 |
| MsG0480021704.01 | MsG0880047649.01 | 0.830078 | 3.595653e-55 | 3.748817e-52 |
| MsG0380015090.01 | MsG0480021704.01 | 0.847593 | 1.048573e-59 | 1.873015e-56 |
| MsG0380015340.01 | MsG0480021704.01 | 0.836175 | 1.091734e-56 | 1.365150e-53 |
| MsG0380015402.01 | MsG0480021704.01 | 0.823890 | 1.085519e-53 | 9.467352e-51 |
| MsG0380016027.01 | MsG0480021704.01 | 0.827220 | 1.764497e-54 | 1.692669e-51 |
| MsG0380017332.01 | MsG0480021704.01 | 0.808085 | 3.683711e-50 | 2.086748e-47 |
| MsG0380017588.01 | MsG0480021704.01 | 0.800268 | 1.561081e-48 | 7.237539e-46 |
| MsG0380017605.01 | MsG0480021704.01 | 0.812460 | 4.191993e-51 | 2.667074e-48 |
| MsG0380017696.01 | MsG0480021704.01 | 0.832921 | 7.171379e-56 | 8.131641e-53 |
| MsG0380017932.01 | MsG0480021704.01 | 0.817726 | 2.839277e-52 | 2.084201e-49 |
| MsG0480018228.01 | MsG0480021704.01 | 0.849258 | 3.629108e-60 | 6.840683e-57 |
| MsG0280007919.01 | MsG0480021704.01 | 0.858064 | 1.064860e-62 | 2.683794e-59 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAGACTGGTTCCATTATT+TGG | 0.093724 | 4:-63232365 | None:intergenic |
| TGAATGTCGTTAACAGTTTC+AGG | 0.178272 | 4:-63231792 | None:intergenic |
| TTTGCTGTATCTGCAGAAAA+TGG | 0.256970 | 4:+63231732 | MsG0480021704.01.T01:CDS |
| GTGATTTAATAGTTGACTTC+TGG | 0.304333 | 4:+63232566 | MsG0480021704.01.T01:three_prime_UTR |
| TCAAATGAAGTCCCAAATAA+TGG | 0.319473 | 4:+63232353 | MsG0480021704.01.T01:CDS |
| ACAGACTGGTTCCATTATTT+GGG | 0.352932 | 4:-63232364 | None:intergenic |
| AGATACAGCAAAATCAATAT+AGG | 0.363029 | 4:-63231721 | None:intergenic |
| TGCTGTTATCTCAGCACTGC+TGG | 0.389855 | 4:-63232387 | None:intergenic |
| TTGCTGTATCTGCAGAAAAT+GGG | 0.395630 | 4:+63231733 | MsG0480021704.01.T01:CDS |
| AGATTACCTTGTTCACCATC+TGG | 0.397013 | 4:-63231181 | None:intergenic |
| TACATTGCAATCTTGAAGAT+TGG | 0.397369 | 4:+63232619 | MsG0480021704.01.T01:three_prime_UTR |
| GATACAGCAAAATCAATATA+GGG | 0.403559 | 4:-63231720 | None:intergenic |
| ATAGTTGACTTCTGGTGGTC+TGG | 0.407653 | 4:+63232574 | MsG0480021704.01.T01:three_prime_UTR |
| AAGACTGTGGTATGCTGGCT+CGG | 0.435771 | 4:-63232466 | None:intergenic |
| TCAACCTATTTGCTTCCATA+CGG | 0.452181 | 4:-63232421 | None:intergenic |
| GAGCCCGTATGGAAGCAAAT+AGG | 0.454008 | 4:+63232417 | MsG0480021704.01.T01:CDS |
| CTCAGCACTGCTGGACAGAC+TGG | 0.455206 | 4:-63232378 | None:intergenic |
| CTAGGAAGACTGTGGTATGC+TGG | 0.471259 | 4:-63232471 | None:intergenic |
| CAACCTATTTGCTTCCATAC+GGG | 0.491149 | 4:-63232420 | None:intergenic |
| AGCAGAGCAGAGAGCCCGTA+TGG | 0.494494 | 4:+63232406 | MsG0480021704.01.T01:CDS |
| GGGATGCTGTAGTCCACAAC+TGG | 0.510182 | 4:-63231160 | None:intergenic |
| GATTACCTTGTTCACCATCT+GGG | 0.514063 | 4:-63231180 | None:intergenic |
| ATTTAATAGTTGACTTCTGG+TGG | 0.518733 | 4:+63232569 | MsG0480021704.01.T01:three_prime_UTR |
| AAAGAAAGAGTTGCAATGGT+GGG | 0.531989 | 4:+63231113 | None:intergenic |
| TATGGAAGCAAATAGGTTGA+AGG | 0.541904 | 4:+63232424 | MsG0480021704.01.T01:CDS |
| ATAGGTTGAAGGCACTAGAA+AGG | 0.545276 | 4:+63232435 | MsG0480021704.01.T01:CDS |
| TTACAATAAATATCAAAGCT+AGG | 0.548001 | 4:-63232489 | None:intergenic |
| GAAGTCAACTATTAAATCAC+GGG | 0.559043 | 4:-63232563 | None:intergenic |
| TGCTGTATCTGCAGAAAATG+GGG | 0.567337 | 4:+63231734 | MsG0480021704.01.T01:CDS |
| GGTGGTTCACGCAACTTCGA+TGG | 0.570994 | 4:-63231139 | None:intergenic |
| AGACTGTGGTATGCTGGCTC+GGG | 0.572569 | 4:-63232465 | None:intergenic |
| AGCATCCCAGATGGTGAACA+AGG | 0.583542 | 4:+63231175 | MsG0480021704.01.T01:CDS |
| AGAAGTCAACTATTAAATCA+CGG | 0.584982 | 4:-63232564 | None:intergenic |
| GTTGCGTGAACCACCAGTTG+TGG | 0.628493 | 4:+63231147 | MsG0480021704.01.T01:CDS |
| AAGAAAGAGTTGCAATGGTG+GGG | 0.638912 | 4:+63231114 | None:intergenic |
| ATGCTGTAGTCCACAACTGG+TGG | 0.647441 | 4:-63231157 | None:intergenic |
| GTGGACTACAGCATCCCAGA+TGG | 0.666651 | 4:+63231166 | MsG0480021704.01.T01:CDS |
| TATCAAAGCTAGGAAGACTG+TGG | 0.691472 | 4:-63232479 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATCTAATTAGTTCTTT+TGG | - | Chr4:63231670-63231689 | None:intergenic | 15.0% |
| !! | AATAATTACAAGAAATCTAG+AGG | - | Chr4:63232142-63232161 | None:intergenic | 20.0% |
| !! | ATTCACATACAATTGAAAAA+AGG | - | Chr4:63231456-63231475 | None:intergenic | 20.0% |
| !! | TTACAATAAATATCAAAGCT+AGG | - | Chr4:63232492-63232511 | None:intergenic | 20.0% |
| ! | AGAAGTCAACTATTAAATCA+CGG | - | Chr4:63232567-63232586 | None:intergenic | 25.0% |
| ! | AGATACAGCAAAATCAATAT+AGG | - | Chr4:63231724-63231743 | None:intergenic | 25.0% |
| ! | ATGATCAAATTGTCAATTGT+TGG | - | Chr4:63231510-63231529 | None:intergenic | 25.0% |
| ! | CAAAGAAATTAAACTCACTT+CGG | - | Chr4:63231853-63231872 | None:intergenic | 25.0% |
| ! | GATACAGCAAAATCAATATA+GGG | - | Chr4:63231723-63231742 | None:intergenic | 25.0% |
| ! | TATCATTAATAACACACTTC+TGG | - | Chr4:63232027-63232046 | None:intergenic | 25.0% |
| ! | TCACTAAATAGAAGTGATAA+TGG | - | Chr4:63232194-63232213 | None:intergenic | 25.0% |
| ! | TTGAAAAAAGGAAAATAACG+AGG | - | Chr4:63231444-63231463 | None:intergenic | 25.0% |
| !! | AACTGATTCATATTTCAAAC+AGG | + | Chr4:63231594-63231613 | MsG0480021704.01.T01:intron | 25.0% |
| !! | ACTGATTCATATTTCAAACA+GGG | + | Chr4:63231595-63231614 | MsG0480021704.01.T01:intron | 25.0% |
| !! | AGTGTGTTATTAATGATACA+AGG | + | Chr4:63232029-63232048 | MsG0480021704.01.T01:intron | 25.0% |
| !! | ATGAACTTTTCTTTTGTGAA+AGG | + | Chr4:63231923-63231942 | MsG0480021704.01.T01:intron | 25.0% |
| !! | GAAATCTGTTAAAACACTTT+TGG | + | Chr4:63231945-63231964 | MsG0480021704.01.T01:intron | 25.0% |
| !! | GTGTGTTATTAATGATACAA+GGG | + | Chr4:63232030-63232049 | MsG0480021704.01.T01:intron | 25.0% |
| !!! | ATGAAGGAATACATTGATTT+TGG | + | Chr4:63231562-63231581 | MsG0480021704.01.T01:intron | 25.0% |
| !!! | ATTTCTGAAACACTTATAAC+AGG | - | Chr4:63231403-63231422 | None:intergenic | 25.0% |
| AAAAAAGGAAAATAACGAGG+AGG | - | Chr4:63231441-63231460 | None:intergenic | 30.0% | |
| AGACTGTTGTATTCTTTCAT+TGG | + | Chr4:63232070-63232089 | MsG0480021704.01.T01:intron | 30.0% | |
| ATCTGATCCTAAGTTTGTAA+CGG | + | Chr4:63232235-63232254 | MsG0480021704.01.T01:intron | 30.0% | |
| CAATATTCCAGTGAACTATA+TGG | - | Chr4:63231634-63231653 | None:intergenic | 30.0% | |
| CAGGTGATTAATTCAAGAAA+TGG | - | Chr4:63231384-63231403 | None:intergenic | 30.0% | |
| GAAGTCAACTATTAAATCAC+GGG | - | Chr4:63232566-63232585 | None:intergenic | 30.0% | |
| GATAAACCAAATCGTAAACA+AGG | + | Chr4:63232212-63232231 | MsG0480021704.01.T01:intron | 30.0% | |
| TACATTGCAATCTTGAAGAT+TGG | + | Chr4:63232619-63232638 | MsG0480021704.01.T01:three_prime_UTR | 30.0% | |
| TCAAATGAAGTCCCAAATAA+TGG | + | Chr4:63232353-63232372 | MsG0480021704.01.T01:CDS | 30.0% | |
| TGTGAGTAATCTGAATTGTT+TGG | + | Chr4:63231993-63232012 | MsG0480021704.01.T01:intron | 30.0% | |
| TTACTTGCGTCTGAATTAAT+AGG | + | Chr4:63231253-63231272 | MsG0480021704.01.T01:intron | 30.0% | |
| TTCTAGACGAACTTTACTAT+AGG | - | Chr4:63231322-63231341 | None:intergenic | 30.0% | |
| ! | ATTACCTTCTCTTTTATTGC+AGG | + | Chr4:63232259-63232278 | MsG0480021704.01.T01:intron | 30.0% |
| ! | ATTTAATAGTTGACTTCTGG+TGG | + | Chr4:63232569-63232588 | MsG0480021704.01.T01:three_prime_UTR | 30.0% |
| ! | GTGATTTAATAGTTGACTTC+TGG | + | Chr4:63232566-63232585 | MsG0480021704.01.T01:three_prime_UTR | 30.0% |
| !!! | TTTTCAGTTGTGCTACTTTT+GGG | - | Chr4:63232329-63232348 | None:intergenic | 30.0% |
| ACCATAGGTAGACAAAATGA+AGG | + | Chr4:63231546-63231565 | MsG0480021704.01.T01:intron | 35.0% | |
| ATTTGATCATTGAAGCTCAC+TGG | + | Chr4:63231520-63231539 | MsG0480021704.01.T01:intron | 35.0% | |
| GTGAACTATATGGAATCAGT+TGG | - | Chr4:63231624-63231643 | None:intergenic | 35.0% | |
| TCAACCTATTTGCTTCCATA+CGG | - | Chr4:63232424-63232443 | None:intergenic | 35.0% | |
| TGAATGTCGTTAACAGTTTC+AGG | - | Chr4:63231795-63231814 | None:intergenic | 35.0% | |
| TTGCTGTATCTGCAGAAAAT+GGG | + | Chr4:63231733-63231752 | MsG0480021704.01.T01:CDS | 35.0% | |
| ! | ACAGACTGGTTCCATTATTT+GGG | - | Chr4:63232367-63232386 | None:intergenic | 35.0% |
| ! | ACTGATTCCATATAGTTCAC+TGG | + | Chr4:63231624-63231643 | MsG0480021704.01.T01:intron | 35.0% |
| ! | AGGTATTTTGCTTAGATCTG+TGG | + | Chr4:63231273-63231292 | MsG0480021704.01.T01:intron | 35.0% |
| ! | ATTGTTGGTTGTAATCTCTC+TGG | - | Chr4:63231495-63231514 | None:intergenic | 35.0% |
| ! | TATGGAAGCAAATAGGTTGA+AGG | + | Chr4:63232424-63232443 | MsG0480021704.01.T01:CDS | 35.0% |
| ! | TCAGATCCTTGTTTACGATT+TGG | - | Chr4:63232221-63232240 | None:intergenic | 35.0% |
| ! | TCATTTTGTCTACCTATGGT+TGG | - | Chr4:63231546-63231565 | None:intergenic | 35.0% |
| ! | TCCTTCATTTTGTCTACCTA+TGG | - | Chr4:63231550-63231569 | None:intergenic | 35.0% |
| ! | TTTGCTGTATCTGCAGAAAA+TGG | + | Chr4:63231732-63231751 | MsG0480021704.01.T01:CDS | 35.0% |
| !! | ACATGCTGACTTCATAACAA+AGG | - | Chr4:63232165-63232184 | None:intergenic | 35.0% |
| !!! | CTTTTCAGTTGTGCTACTTT+TGG | - | Chr4:63232330-63232349 | None:intergenic | 35.0% |
| AGATTACCTTGTTCACCATC+TGG | - | Chr4:63231184-63231203 | None:intergenic | 40.0% | |
| CAACCTATTTGCTTCCATAC+GGG | - | Chr4:63232423-63232442 | None:intergenic | 40.0% | |
| GATTACCTTGTTCACCATCT+GGG | - | Chr4:63231183-63231202 | None:intergenic | 40.0% | |
| GGTAATGCCGTTACAAACTT+AGG | - | Chr4:63232245-63232264 | None:intergenic | 40.0% | |
| GGTTCCTGCAATAAAAGAGA+AGG | - | Chr4:63232266-63232285 | None:intergenic | 40.0% | |
| GTATTTGCACTTCGCTATCA+AGG | + | Chr4:63231212-63231231 | MsG0480021704.01.T01:intron | 40.0% | |
| TATCAAAGCTAGGAAGACTG+TGG | - | Chr4:63232482-63232501 | None:intergenic | 40.0% | |
| TGCTGTATCTGCAGAAAATG+GGG | + | Chr4:63231734-63231753 | MsG0480021704.01.T01:CDS | 40.0% | |
| TTGGAGACTATTTGAACGTC+TGG | + | Chr4:63232089-63232108 | MsG0480021704.01.T01:intron | 40.0% | |
| ! | CGCAGAAATCACATTTTGCA+CGG | - | Chr4:63232297-63232316 | None:intergenic | 40.0% |
| ! | GACAGACTGGTTCCATTATT+TGG | - | Chr4:63232368-63232387 | None:intergenic | 40.0% |
| ! | GCAGAAATCACATTTTGCAC+GGG | - | Chr4:63232296-63232315 | None:intergenic | 40.0% |
| !! | ATAGGTTGAAGGCACTAGAA+AGG | + | Chr4:63232435-63232454 | MsG0480021704.01.T01:CDS | 40.0% |
| ! | ATAGTTGACTTCTGGTGGTC+TGG | + | Chr4:63232574-63232593 | MsG0480021704.01.T01:three_prime_UTR | 45.0% |
| !! | AAAATAACGAGGAGGCGTTC+TGG | - | Chr4:63231433-63231452 | None:intergenic | 45.0% |
| !! | AAATAACGAGGAGGCGTTCT+GGG | - | Chr4:63231432-63231451 | None:intergenic | 45.0% |
| AGCATCCCAGATGGTGAACA+AGG | + | Chr4:63231175-63231194 | MsG0480021704.01.T01:CDS | 50.0% | |
| ATGCTGTAGTCCACAACTGG+TGG | - | Chr4:63231160-63231179 | None:intergenic | 50.0% | |
| CTAGGAAGACTGTGGTATGC+TGG | - | Chr4:63232474-63232493 | None:intergenic | 50.0% | |
| GAGCCCGTATGGAAGCAAAT+AGG | + | Chr4:63232417-63232436 | MsG0480021704.01.T01:CDS | 50.0% | |
| TGCTGTTATCTCAGCACTGC+TGG | - | Chr4:63232390-63232409 | None:intergenic | 50.0% | |
| ! | AAGACTGTGGTATGCTGGCT+CGG | - | Chr4:63232469-63232488 | None:intergenic | 50.0% |
| !! | ACATTTTGCACGGGCTGAGA+AGG | - | Chr4:63232287-63232306 | None:intergenic | 50.0% |
| GAAGCTCACTGGCCAACCAT+AGG | + | Chr4:63231531-63231550 | MsG0480021704.01.T01:intron | 55.0% | |
| GGGATGCTGTAGTCCACAAC+TGG | - | Chr4:63231163-63231182 | None:intergenic | 55.0% | |
| GGTGGTTCACGCAACTTCGA+TGG | - | Chr4:63231142-63231161 | None:intergenic | 55.0% | |
| GTTGCGTGAACCACCAGTTG+TGG | + | Chr4:63231147-63231166 | MsG0480021704.01.T01:CDS | 55.0% | |
| ! | GTGGACTACAGCATCCCAGA+TGG | + | Chr4:63231166-63231185 | MsG0480021704.01.T01:CDS | 55.0% |
| !! | AGACTGTGGTATGCTGGCTC+GGG | - | Chr4:63232468-63232487 | None:intergenic | 55.0% |
| AGCAGAGCAGAGAGCCCGTA+TGG | + | Chr4:63232406-63232425 | MsG0480021704.01.T01:CDS | 60.0% | |
| CTCAGCACTGCTGGACAGAC+TGG | - | Chr4:63232381-63232400 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 63231128 | 63232648 | 63231128 | ID=MsG0480021704.01;Name=MsG0480021704.01 |
| Chr4 | mRNA | 63231128 | 63232648 | 63231128 | ID=MsG0480021704.01.T01;Parent=MsG0480021704.01;Name=MsG0480021704.01.T01;_AED=0.42;_eAED=0.44;_QI=0|0.75|0.8|1|0.25|0.2|5|155|150 |
| Chr4 | exon | 63232281 | 63232648 | 63232281 | ID=MsG0480021704.01.T01:exon:20874;Parent=MsG0480021704.01.T01 |
| Chr4 | exon | 63231684 | 63231854 | 63231684 | ID=MsG0480021704.01.T01:exon:20873;Parent=MsG0480021704.01.T01 |
| Chr4 | exon | 63231128 | 63231196 | 63231128 | ID=MsG0480021704.01.T01:exon:20872;Parent=MsG0480021704.01.T01 |
| Chr4 | CDS | 63231128 | 63231196 | 63231128 | ID=MsG0480021704.01.T01:cds;Parent=MsG0480021704.01.T01 |
| Chr4 | CDS | 63231684 | 63231854 | 63231684 | ID=MsG0480021704.01.T01:cds;Parent=MsG0480021704.01.T01 |
| Chr4 | CDS | 63232281 | 63232493 | 63232281 | ID=MsG0480021704.01.T01:cds;Parent=MsG0480021704.01.T01 |
| Chr4 | three_prime_UTR | 63232494 | 63232648 | 63232494 | ID=MsG0480021704.01.T01:three_prime_utr;Parent=MsG0480021704.01.T01 |
| Gene Sequence |
| Protein sequence |
