Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017932.01.T01 | XP_013462271.1 | 97.159 | 176 | 5 | 0 | 1 | 176 | 1 | 176 | 4.38E-120 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017932.01.T01 | I3SCR3 | 97.159 | 176 | 5 | 0 | 1 | 176 | 1 | 176 | 2.09e-120 | 348 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047815.01 | MsG0380017932.01 | 0.831712 | 1.428755e-55 | 1.563323e-52 |
| MsG0180001293.01 | MsG0380017932.01 | 0.846534 | 2.044839e-59 | 3.530687e-56 |
| MsG0180001719.01 | MsG0380017932.01 | 0.826449 | 2.697136e-54 | 2.530237e-51 |
| MsG0180002134.01 | MsG0380017932.01 | 0.804185 | 2.438668e-49 | 1.249208e-46 |
| MsG0180002218.01 | MsG0380017932.01 | 0.822552 | 2.228716e-53 | 1.871658e-50 |
| MsG0180002397.01 | MsG0380017932.01 | 0.820237 | 7.627595e-53 | 6.001649e-50 |
| MsG0180002428.01 | MsG0380017932.01 | 0.810714 | 1.004961e-50 | 6.102641e-48 |
| MsG0180003421.01 | MsG0380017932.01 | 0.805010 | 1.640820e-49 | 8.585802e-47 |
| MsG0180003857.01 | MsG0380017932.01 | 0.849903 | 2.398793e-60 | 4.617496e-57 |
| MsG0180003905.01 | MsG0380017932.01 | 0.828679 | 7.864240e-55 | 7.871424e-52 |
| MsG0180004120.01 | MsG0380017932.01 | 0.885498 | 7.719712e-72 | 5.311169e-68 |
| MsG0180004185.01 | MsG0380017932.01 | 0.855263 | 7.095038e-62 | 1.628460e-58 |
| MsG0180004299.01 | MsG0380017932.01 | 0.853361 | 2.513666e-61 | 5.417348e-58 |
| MsG0180004538.01 | MsG0380017932.01 | 0.834691 | 2.589524e-56 | 3.095876e-53 |
| MsG0180004583.01 | MsG0380017932.01 | 0.847685 | 9.886911e-60 | 1.771431e-56 |
| MsG0180004828.01 | MsG0380017932.01 | 0.808966 | 2.388364e-50 | 1.384681e-47 |
| MsG0180005048.01 | MsG0380017932.01 | 0.833796 | 4.340543e-56 | 5.052939e-53 |
| MsG0180005655.01 | MsG0380017932.01 | 0.852097 | 5.771265e-61 | 1.192945e-57 |
| MsG0180006133.01 | MsG0380017932.01 | 0.814217 | 1.723598e-51 | 1.149573e-48 |
| MsG0380014542.01 | MsG0380017932.01 | 0.849115 | 3.976926e-60 | 7.461792e-57 |
| MsG0380014544.01 | MsG0380017932.01 | 0.803090 | 4.114511e-49 | 2.049131e-46 |
| MsG0380014666.01 | MsG0380017932.01 | 0.866830 | 2.139122e-65 | 7.311271e-62 |
| MsG0380015340.01 | MsG0380017932.01 | 0.841613 | 4.273848e-58 | 6.314476e-55 |
| MsG0380015394.01 | MsG0380017932.01 | 0.816530 | 5.272461e-52 | 3.745389e-49 |
| MsG0380015402.01 | MsG0380017932.01 | 0.820639 | 6.167898e-53 | 4.907122e-50 |
| MsG0380015656.01 | MsG0380017932.01 | 0.814008 | 1.917332e-51 | 1.271589e-48 |
| MsG0380015954.01 | MsG0380017932.01 | 0.812996 | 3.200388e-51 | 2.065063e-48 |
| MsG0380016027.01 | MsG0380017932.01 | 0.851751 | 7.235435e-61 | 1.479237e-57 |
| MsG0380016217.01 | MsG0380017932.01 | 0.826691 | 2.361203e-54 | 2.230339e-51 |
| MsG0380017128.01 | MsG0380017932.01 | 0.818426 | 1.972957e-52 | 1.476442e-49 |
| MsG0380017332.01 | MsG0380017932.01 | 0.847061 | 1.467442e-59 | 2.576995e-56 |
| MsG0380017588.01 | MsG0380017932.01 | 0.829635 | 4.609534e-55 | 4.744957e-52 |
| MsG0380017605.01 | MsG0380017932.01 | 0.834220 | 3.400353e-56 | 4.008652e-53 |
| MsG0380017632.01 | MsG0380017932.01 | 0.807464 | 4.991644e-50 | 2.782208e-47 |
| MsG0380017696.01 | MsG0380017932.01 | 0.869144 | 3.857573e-66 | 1.432308e-62 |
| MsG0380017932.01 | MsG0380018055.01 | 0.802787 | 4.753732e-49 | 2.349504e-46 |
| MsG0380017932.01 | MsG0480018228.01 | 0.863758 | 1.980552e-64 | 6.072921e-61 |
| MsG0380017932.01 | MsG0480020398.01 | 0.880200 | 6.676909e-70 | 3.727913e-66 |
| MsG0380017932.01 | MsG0480020856.01 | 0.830896 | 2.267820e-55 | 2.421867e-52 |
| MsG0380017932.01 | MsG0480020921.01 | 0.830538 | 2.775336e-55 | 2.932468e-52 |
| MsG0380017932.01 | MsG0480020926.01 | 0.822237 | 2.638182e-53 | 2.195505e-50 |
| MsG0380017932.01 | MsG0480021048.01 | 0.801075 | 1.068215e-48 | 5.055193e-46 |
| MsG0380017932.01 | MsG0480021100.01 | 0.844860 | 5.819211e-59 | 9.520103e-56 |
| MsG0380017932.01 | MsG0480021301.01 | 0.862715 | 4.162915e-64 | 1.231025e-60 |
| MsG0380017932.01 | MsG0480021704.01 | 0.817726 | 2.839277e-52 | 2.084201e-49 |
| MsG0380017932.01 | MsG0480021773.01 | 0.858442 | 8.215563e-63 | 2.096998e-59 |
| MsG0380017932.01 | MsG0480021902.01 | 0.866134 | 3.560907e-65 | 1.187413e-61 |
| MsG0380017932.01 | MsG0480022307.01 | 0.850935 | 1.230878e-60 | 2.450910e-57 |
| MsG0380017932.01 | MsG0480022378.01 | 0.807306 | 5.390785e-50 | 2.992397e-47 |
| MsG0380017932.01 | MsG0480022784.01 | 0.815173 | 1.058937e-51 | 7.247348e-49 |
| MsG0380017932.01 | MsG0480023003.01 | 0.808756 | 2.648104e-50 | 1.526732e-47 |
| MsG0380017932.01 | MsG0480023414.01 | 0.811459 | 6.928084e-51 | 4.291006e-48 |
| MsG0380017932.01 | MsG0480023424.01 | 0.841961 | 3.457904e-58 | 5.164650e-55 |
| MsG0380017932.01 | MsG0480023426.01 | 0.871838 | 5.035900e-67 | 2.060998e-63 |
| MsG0380017932.01 | MsG0480023706.01 | 0.861351 | 1.090604e-63 | 3.077018e-60 |
| MsG0380017932.01 | MsG0480023842.01 | 0.829363 | 5.367542e-55 | 5.482103e-52 |
| MsG0380017932.01 | MsG0480024002.01 | 0.834220 | 3.399941e-56 | 4.008194e-53 |
| MsG0380017932.01 | MsG0580024276.01 | 0.824042 | 9.997482e-54 | 8.755637e-51 |
| MsG0380017932.01 | MsG0580024787.01 | 0.834904 | 2.288318e-56 | 2.753729e-53 |
| MsG0380017932.01 | MsG0580025177.01 | 0.804987 | 1.659367e-49 | 8.677813e-47 |
| MsG0380017932.01 | MsG0580025186.01 | 0.809875 | 1.524536e-50 | 9.055061e-48 |
| MsG0380017932.01 | MsG0580025504.01 | 0.846086 | 2.709225e-59 | 4.610034e-56 |
| MsG0380017932.01 | MsG0580025775.01 | 0.805912 | 1.061702e-49 | 5.685883e-47 |
| MsG0380017932.01 | MsG0580026343.01 | 0.817043 | 4.046542e-52 | 2.915257e-49 |
| MsG0380017932.01 | MsG0580028927.01 | 0.823530 | 1.317999e-53 | 1.137782e-50 |
| MsG0380017932.01 | MsG0580028955.01 | 0.858776 | 6.528613e-63 | 1.685393e-59 |
| MsG0380017932.01 | MsG0580029591.01 | 0.809497 | 1.837413e-50 | 1.080500e-47 |
| MsG0380017932.01 | MsG0680035350.01 | 0.804418 | 2.180543e-49 | 1.123688e-46 |
| MsG0380017932.01 | MsG0680035776.01 | 0.842101 | 3.175565e-58 | 4.764392e-55 |
| MsG0380017932.01 | MsG0680035792.01 | 0.819990 | 8.688432e-53 | 6.789954e-50 |
| MsG0380017932.01 | MsG0780036534.01 | 0.835844 | 1.324630e-56 | 1.639622e-53 |
| MsG0380017932.01 | MsG0780038736.01 | 0.827215 | 1.769156e-54 | 1.696927e-51 |
| MsG0380017932.01 | MsG0780040620.01 | 0.805110 | 1.563737e-49 | 8.203533e-47 |
| MsG0380017932.01 | MsG0780040641.01 | 0.841591 | 4.331685e-58 | 6.395497e-55 |
| MsG0380017932.01 | MsG0780040899.01 | 0.864054 | 1.601907e-64 | 4.961639e-61 |
| MsG0380017932.01 | MsG0780040978.01 | 0.802280 | 6.046194e-49 | 2.949878e-46 |
| MsG0380017932.01 | MsG0780041232.01 | 0.817544 | 3.121363e-52 | 2.279825e-49 |
| MsG0380017932.01 | MsG0780041273.01 | 0.844782 | 6.109645e-59 | 9.971300e-56 |
| MsG0380017932.01 | MsG0780041359.01 | 0.810874 | 9.278473e-51 | 5.658682e-48 |
| MsG0380017932.01 | MsG0780041546.01 | 0.809250 | 2.075841e-50 | 1.212748e-47 |
| MsG0380017932.01 | MsG0780041560.01 | 0.806845 | 6.748377e-50 | 3.701423e-47 |
| MsG0380017932.01 | MsG0880043684.01 | 0.820604 | 6.283620e-53 | 4.994385e-50 |
| MsG0380017932.01 | MsG0880044103.01 | 0.827724 | 1.335939e-54 | 1.300489e-51 |
| MsG0380017932.01 | MsG0880044437.01 | 0.855216 | 7.320286e-62 | 1.677469e-58 |
| MsG0380017932.01 | MsG0880045015.01 | 0.820172 | 7.893850e-53 | 6.200462e-50 |
| MsG0380017932.01 | MsG0880045356.01 | 0.821043 | 4.980751e-53 | 4.008277e-50 |
| MsG0380017932.01 | MsG0880045439.01 | 0.805992 | 1.021260e-49 | 5.480626e-47 |
| MsG0380017932.01 | MsG0880045584.01 | 0.807317 | 5.361327e-50 | 2.976928e-47 |
| MsG0380017932.01 | MsG0880045612.01 | 0.844756 | 6.208512e-59 | 1.012415e-55 |
| MsG0380017932.01 | MsG0880045647.01 | 0.875557 | 2.804777e-68 | 1.315453e-64 |
| MsG0380017932.01 | MsG0880046904.01 | 0.824139 | 9.488432e-54 | 8.333259e-51 |
| MsG0380017932.01 | MsG0880046905.01 | 0.831797 | 1.361288e-55 | 1.493280e-52 |
| MsG0380017932.01 | MsG0880047311.01 | 0.803813 | 2.914382e-49 | 1.478740e-46 |
| MsG0380017932.01 | MsG0880047649.01 | 0.846114 | 2.660776e-59 | 4.531756e-56 |
| MsG0380017932.01 | MsG0880047681.01 | 0.802712 | 4.925719e-49 | 2.429800e-46 |
| MsG0280007919.01 | MsG0380017932.01 | 0.847562 | 1.069215e-59 | 1.908082e-56 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017932.01.T01 | MTR_3g115300 | 97.159 | 176 | 5 | 0 | 1 | 176 | 1 | 176 | 5.30e-124 | 348 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017932.01.T01 | AT5G42330 | 51.240 | 121 | 51 | 5 | 6 | 121 | 2 | 119 | 6.30e-27 | 101 |
Find 59 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACAATTGCTTCTGAATTT+AGG | 0.081710 | 3:+102315940 | MsG0380017932.01.T01:CDS |
| CACAATTGCTTCTGAATTTA+GGG | 0.195473 | 3:+102315941 | MsG0380017932.01.T01:CDS |
| TGAAACAGAACACCAGATTT+AGG | 0.204443 | 3:-102316038 | None:intergenic |
| GAAGCAATTGTGCGGTATTC+AGG | 0.265276 | 3:-102315930 | None:intergenic |
| AGGATGGTTCGTGACGAATT+TGG | 0.279654 | 3:+102315972 | MsG0380017932.01.T01:CDS |
| TCGGTCGCGGTGGTCGGAGG+TGG | 0.289193 | 3:-102315682 | None:intergenic |
| TGGTCGGAGGTGGGATTTCA+TGG | 0.291163 | 3:-102315672 | None:intergenic |
| CTTGATTTAATATGATTGTA+TGG | 0.314919 | 3:+102316448 | MsG0380017932.01.T01:three_prime_UTR |
| GAAACAGAACACCAGATTTA+GGG | 0.318085 | 3:-102316037 | None:intergenic |
| CTTGTGTTTACTGTTGAATC+TGG | 0.325864 | 3:+102316191 | MsG0380017932.01.T01:CDS |
| CCAGATCCGGAAGAAATTAA+TGG | 0.326179 | 3:+102315999 | MsG0380017932.01.T01:CDS |
| CCATTAATTTCTTCCGGATC+TGG | 0.333300 | 3:-102315999 | None:intergenic |
| TTTAACCAAGTCTCGGAAAC+TGG | 0.342643 | 3:+102315887 | MsG0380017932.01.T01:CDS |
| AGATTTAGGGTTACAAGAAT+TGG | 0.342948 | 3:-102316024 | None:intergenic |
| TTGGTACCATTAATTTCTTC+CGG | 0.348296 | 3:-102316005 | None:intergenic |
| CGAAGACGCATCGGAGACTT+AGG | 0.358488 | 3:-102315707 | None:intergenic |
| CGGTATTCAGGTCGTAGTTC+AGG | 0.361330 | 3:-102315918 | None:intergenic |
| AATTCTTGTAACCCTAAATC+TGG | 0.396987 | 3:+102316026 | MsG0380017932.01.T01:CDS |
| AAAATGTCTCAATTTCCATT+TGG | 0.410440 | 3:-102316511 | None:intergenic |
| AAGAATACTGCAAGAAAACT+TGG | 0.439698 | 3:+102316218 | MsG0380017932.01.T01:CDS |
| CCCTCTCTTCAAACTCCACC+AGG | 0.453304 | 3:+102315752 | MsG0380017932.01.T01:CDS |
| GAGAGGTTGAAGAGAAAGAA+AGG | 0.462625 | 3:+102316101 | MsG0380017932.01.T01:CDS |
| TAGGGATCGGTCGCGGTGGT+CGG | 0.470489 | 3:-102315688 | None:intergenic |
| TTGAACCAGTTTCCGAGACT+TGG | 0.470567 | 3:-102315892 | None:intergenic |
| TTATGATGATTATTCACCTT+AGG | 0.472768 | 3:-102316164 | None:intergenic |
| CGGTCGCGGTGGTCGGAGGT+GGG | 0.481693 | 3:-102315681 | None:intergenic |
| CTGAATTTAGGGCTTTATCA+AGG | 0.492327 | 3:+102315952 | MsG0380017932.01.T01:CDS |
| CGAATTTGGAAAACCAGATC+CGG | 0.501998 | 3:+102315986 | MsG0380017932.01.T01:CDS |
| AATAAGAAACCTCCTCTAGC+TGG | 0.510440 | 3:+102316324 | MsG0380017932.01.T01:three_prime_UTR |
| GTTGGAGCATCGAGAAGAGT+AGG | 0.523400 | 3:+102316386 | MsG0380017932.01.T01:three_prime_UTR |
| ACTGTTGGTGAGAAGAAAGT+TGG | 0.529021 | 3:+102316368 | MsG0380017932.01.T01:three_prime_UTR |
| GGATCGGTCGCGGTGGTCGG+AGG | 0.529657 | 3:-102315685 | None:intergenic |
| ATTTAGGGCTTTATCAAGGA+TGG | 0.529903 | 3:+102315956 | MsG0380017932.01.T01:CDS |
| CCTGGTGGAGTTTGAAGAGA+GGG | 0.535099 | 3:-102315752 | None:intergenic |
| CAGGTTCTTTAACCAAGTCT+CGG | 0.545491 | 3:+102315880 | MsG0380017932.01.T01:intron |
| TTCTGCTGCTTATTCTGCTG+AGG | 0.545660 | 3:+102316259 | MsG0380017932.01.T01:CDS |
| TGTGACTGAAAATGCGGTGC+GGG | 0.546036 | 3:-102315620 | None:intergenic |
| ACCTGGTGGAGTTTGAAGAG+AGG | 0.555239 | 3:-102315753 | None:intergenic |
| GAAGACGCATCGGAGACTTA+GGG | 0.556071 | 3:-102315706 | None:intergenic |
| TTGATTTAATATGATTGTAT+GGG | 0.562573 | 3:+102316449 | MsG0380017932.01.T01:three_prime_UTR |
| TACTAGTATTAAGCAACCTA+AGG | 0.572843 | 3:+102316148 | MsG0380017932.01.T01:CDS |
| ATGATGAGTATTCTGCAAGA+AGG | 0.596236 | 3:+102316075 | MsG0380017932.01.T01:CDS |
| ATTTGATAAACTGTTACTGT+TGG | 0.597164 | 3:+102316353 | MsG0380017932.01.T01:three_prime_UTR |
| ATGCTTCTAAGCATATACCT+TGG | 0.602130 | 3:-102316292 | None:intergenic |
| TCAAATCTTGAACCAGCTAG+AGG | 0.605228 | 3:-102316336 | None:intergenic |
| CGCATCGGAGACTTAGGGAT+CGG | 0.618390 | 3:-102315701 | None:intergenic |
| AAGAGAGGGAGAGTCAAGAA+CGG | 0.623596 | 3:-102315738 | None:intergenic |
| GTTCGAGTTCGAAGACGCAT+CGG | 0.624113 | 3:-102315716 | None:intergenic |
| GGAGACTTAGGGATCGGTCG+CGG | 0.628168 | 3:-102315695 | None:intergenic |
| AATCTTGAACCAGCTAGAGG+AGG | 0.634666 | 3:-102316333 | None:intergenic |
| GACTTAGGGATCGGTCGCGG+TGG | 0.645567 | 3:-102315692 | None:intergenic |
| GAAGAGAAAGAAAGGAGTCA+CGG | 0.667345 | 3:+102316109 | MsG0380017932.01.T01:CDS |
| TCTGGTGTTCTGTTTCAGAG+AGG | 0.698623 | 3:+102316044 | MsG0380017932.01.T01:CDS |
| GCTGAGGTTAGTGAACTCCA+AGG | 0.703163 | 3:+102316275 | MsG0380017932.01.T01:CDS |
| ATTCTGCAAGAAGGAACGAG+AGG | 0.711042 | 3:+102316084 | MsG0380017932.01.T01:CDS |
| GCAATGTGTGACTGAAAATG+CGG | 0.711864 | 3:-102315626 | None:intergenic |
| TAAATTCAGAAGCAATTGTG+CGG | 0.713706 | 3:-102315938 | None:intergenic |
| GAGAAAGAAAGGAGTCACGG+TGG | 0.729465 | 3:+102316112 | MsG0380017932.01.T01:CDS |
| GTGTGACTGAAAATGCGGTG+CGG | 0.745677 | 3:-102315621 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATTTAATATGATTGTAT+GGG | + | Chr3:102316449-102316468 | MsG0380017932.01.T01:three_prime_UTR | 15.0% |
| !! | CTTGATTTAATATGATTGTA+TGG | + | Chr3:102316448-102316467 | MsG0380017932.01.T01:three_prime_UTR | 20.0% |
| ! | AAAATGTCTCAATTTCCATT+TGG | - | Chr3:102316514-102316533 | None:intergenic | 25.0% |
| ! | ATTTGATAAACTGTTACTGT+TGG | + | Chr3:102316353-102316372 | MsG0380017932.01.T01:three_prime_UTR | 25.0% |
| ! | GAAATAAGATTATAAGAACC+TGG | - | Chr3:102315773-102315792 | None:intergenic | 25.0% |
| ! | TAGGAAAAATTCGTACTATT+GGG | + | Chr3:102316405-102316424 | MsG0380017932.01.T01:three_prime_UTR | 25.0% |
| ! | TTATGATGATTATTCACCTT+AGG | - | Chr3:102316167-102316186 | None:intergenic | 25.0% |
| !!! | TTCTGTTACTTTTTACCAAA+TGG | + | Chr3:102316496-102316515 | MsG0380017932.01.T01:three_prime_UTR | 25.0% |
| AAGAATACTGCAAGAAAACT+TGG | + | Chr3:102316218-102316237 | MsG0380017932.01.T01:CDS | 30.0% | |
| AATTCTTGTAACCCTAAATC+TGG | + | Chr3:102316026-102316045 | MsG0380017932.01.T01:CDS | 30.0% | |
| ATAAGATTATAAGAACCTGG+TGG | - | Chr3:102315770-102315789 | None:intergenic | 30.0% | |
| CACAATTGCTTCTGAATTTA+GGG | + | Chr3:102315941-102315960 | MsG0380017932.01.T01:CDS | 30.0% | |
| GTAGGAAAAATTCGTACTAT+TGG | + | Chr3:102316404-102316423 | MsG0380017932.01.T01:three_prime_UTR | 30.0% | |
| GTGGATTTGAAAATTGAAAC+AGG | + | Chr3:102315861-102315880 | MsG0380017932.01.T01:intron | 30.0% | |
| TAAATTCAGAAGCAATTGTG+CGG | - | Chr3:102315941-102315960 | None:intergenic | 30.0% | |
| TACTAGTATTAAGCAACCTA+AGG | + | Chr3:102316148-102316167 | MsG0380017932.01.T01:CDS | 30.0% | |
| TCCACAAACAAAAAATGTCA+TGG | - | Chr3:102315846-102315865 | None:intergenic | 30.0% | |
| TTGGTACCATTAATTTCTTC+CGG | - | Chr3:102316008-102316027 | None:intergenic | 30.0% | |
| ! | AGATTTAGGGTTACAAGAAT+TGG | - | Chr3:102316027-102316046 | None:intergenic | 30.0% |
| !!! | TCCATGACATTTTTTGTTTG+TGG | + | Chr3:102315842-102315861 | MsG0380017932.01.T01:intron | 30.0% |
| ATGATGAGTATTCTGCAAGA+AGG | + | Chr3:102316075-102316094 | MsG0380017932.01.T01:CDS | 35.0% | |
| ATGCTTCTAAGCATATACCT+TGG | - | Chr3:102316295-102316314 | None:intergenic | 35.0% | |
| CTTGTGTTTACTGTTGAATC+TGG | + | Chr3:102316191-102316210 | MsG0380017932.01.T01:CDS | 35.0% | |
| GAAACAGAACACCAGATTTA+GGG | - | Chr3:102316040-102316059 | None:intergenic | 35.0% | |
| GCACAATTGCTTCTGAATTT+AGG | + | Chr3:102315940-102315959 | MsG0380017932.01.T01:CDS | 35.0% | |
| TGAAACAGAACACCAGATTT+AGG | - | Chr3:102316041-102316060 | None:intergenic | 35.0% | |
| ! | ATTTAGGGCTTTATCAAGGA+TGG | + | Chr3:102315956-102315975 | MsG0380017932.01.T01:CDS | 35.0% |
| ! | CTGAATTTAGGGCTTTATCA+AGG | + | Chr3:102315952-102315971 | MsG0380017932.01.T01:CDS | 35.0% |
| !! | TGCGGGTTTTTATTTGATTG+TGG | - | Chr3:102315606-102315625 | None:intergenic | 35.0% |
| AATAAGAAACCTCCTCTAGC+TGG | + | Chr3:102316324-102316343 | MsG0380017932.01.T01:three_prime_UTR | 40.0% | |
| CAGGTTCTTTAACCAAGTCT+CGG | + | Chr3:102315880-102315899 | MsG0380017932.01.T01:intron | 40.0% | |
| CCAGATCCGGAAGAAATTAA+TGG | + | Chr3:102315999-102316018 | MsG0380017932.01.T01:CDS | 40.0% | |
| CCATTAATTTCTTCCGGATC+TGG | - | Chr3:102316002-102316021 | None:intergenic | 40.0% | |
| CGAATTTGGAAAACCAGATC+CGG | + | Chr3:102315986-102316005 | MsG0380017932.01.T01:CDS | 40.0% | |
| GAAGAGAAAGAAAGGAGTCA+CGG | + | Chr3:102316109-102316128 | MsG0380017932.01.T01:CDS | 40.0% | |
| GAGAGGTTGAAGAGAAAGAA+AGG | + | Chr3:102316101-102316120 | MsG0380017932.01.T01:CDS | 40.0% | |
| GCAATGTGTGACTGAAAATG+CGG | - | Chr3:102315629-102315648 | None:intergenic | 40.0% | |
| TCAAATCTTGAACCAGCTAG+AGG | - | Chr3:102316339-102316358 | None:intergenic | 40.0% | |
| TTTAACCAAGTCTCGGAAAC+TGG | + | Chr3:102315887-102315906 | MsG0380017932.01.T01:CDS | 40.0% | |
| ! | ACTGTTGGTGAGAAGAAAGT+TGG | + | Chr3:102316368-102316387 | MsG0380017932.01.T01:three_prime_UTR | 40.0% |
| AAGAGAGGGAGAGTCAAGAA+CGG | - | Chr3:102315741-102315760 | None:intergenic | 45.0% | |
| AATCTTGAACCAGCTAGAGG+AGG | - | Chr3:102316336-102316355 | None:intergenic | 45.0% | |
| AGGATGGTTCGTGACGAATT+TGG | + | Chr3:102315972-102315991 | MsG0380017932.01.T01:CDS | 45.0% | |
| ATTCTGCAAGAAGGAACGAG+AGG | + | Chr3:102316084-102316103 | MsG0380017932.01.T01:CDS | 45.0% | |
| GAAGCAATTGTGCGGTATTC+AGG | - | Chr3:102315933-102315952 | None:intergenic | 45.0% | |
| TCTGGTGTTCTGTTTCAGAG+AGG | + | Chr3:102316044-102316063 | MsG0380017932.01.T01:CDS | 45.0% | |
| TTGAACCAGTTTCCGAGACT+TGG | - | Chr3:102315895-102315914 | None:intergenic | 45.0% | |
| ! | TTCTGCTGCTTATTCTGCTG+AGG | + | Chr3:102316259-102316278 | MsG0380017932.01.T01:CDS | 45.0% |
| ACCTGGTGGAGTTTGAAGAG+AGG | - | Chr3:102315756-102315775 | None:intergenic | 50.0% | |
| CCTGGTGGAGTTTGAAGAGA+GGG | - | Chr3:102315755-102315774 | None:intergenic | 50.0% | |
| CGGTATTCAGGTCGTAGTTC+AGG | - | Chr3:102315921-102315940 | None:intergenic | 50.0% | |
| GAAGACGCATCGGAGACTTA+GGG | - | Chr3:102315709-102315728 | None:intergenic | 50.0% | |
| GAGAAAGAAAGGAGTCACGG+TGG | + | Chr3:102316112-102316131 | MsG0380017932.01.T01:CDS | 50.0% | |
| GCTGAGGTTAGTGAACTCCA+AGG | + | Chr3:102316275-102316294 | MsG0380017932.01.T01:CDS | 50.0% | |
| GTGTGACTGAAAATGCGGTG+CGG | - | Chr3:102315624-102315643 | None:intergenic | 50.0% | |
| TGTGACTGAAAATGCGGTGC+GGG | - | Chr3:102315623-102315642 | None:intergenic | 50.0% | |
| ! | GTTCGAGTTCGAAGACGCAT+CGG | - | Chr3:102315719-102315738 | None:intergenic | 50.0% |
| !! | GTTGGAGCATCGAGAAGAGT+AGG | + | Chr3:102316386-102316405 | MsG0380017932.01.T01:three_prime_UTR | 50.0% |
| CCCTCTCTTCAAACTCCACC+AGG | + | Chr3:102315752-102315771 | MsG0380017932.01.T01:CDS | 55.0% | |
| CGAAGACGCATCGGAGACTT+AGG | - | Chr3:102315710-102315729 | None:intergenic | 55.0% | |
| CGCATCGGAGACTTAGGGAT+CGG | - | Chr3:102315704-102315723 | None:intergenic | 55.0% | |
| TGGTCGGAGGTGGGATTTCA+TGG | - | Chr3:102315675-102315694 | None:intergenic | 55.0% | |
| GGAGACTTAGGGATCGGTCG+CGG | - | Chr3:102315698-102315717 | None:intergenic | 60.0% | |
| GACTTAGGGATCGGTCGCGG+TGG | - | Chr3:102315695-102315714 | None:intergenic | 65.0% | |
| TAGGGATCGGTCGCGGTGGT+CGG | - | Chr3:102315691-102315710 | None:intergenic | 65.0% | |
| CGGTCGCGGTGGTCGGAGGT+GGG | - | Chr3:102315684-102315703 | None:intergenic | 75.0% | |
| GGATCGGTCGCGGTGGTCGG+AGG | - | Chr3:102315688-102315707 | None:intergenic | 75.0% | |
| TCGGTCGCGGTGGTCGGAGG+TGG | - | Chr3:102315685-102315704 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 102315595 | 102316541 | 102315595 | ID=MsG0380017932.01;Name=MsG0380017932.01 |
| Chr3 | mRNA | 102315595 | 102316541 | 102315595 | ID=MsG0380017932.01.T01;Parent=MsG0380017932.01;Name=MsG0380017932.01.T01;_AED=0.37;_eAED=0.37;_QI=58|1|1|1|1|1|2|225|184 |
| Chr3 | exon | 102315595 | 102315773 | 102315595 | ID=MsG0380017932.01.T01:exon:13291;Parent=MsG0380017932.01.T01 |
| Chr3 | exon | 102315883 | 102316541 | 102315883 | ID=MsG0380017932.01.T01:exon:13292;Parent=MsG0380017932.01.T01 |
| Chr3 | five_prime_UTR | 102315595 | 102315652 | 102315595 | ID=MsG0380017932.01.T01:five_prime_utr;Parent=MsG0380017932.01.T01 |
| Chr3 | CDS | 102315653 | 102315773 | 102315653 | ID=MsG0380017932.01.T01:cds;Parent=MsG0380017932.01.T01 |
| Chr3 | CDS | 102315883 | 102316316 | 102315883 | ID=MsG0380017932.01.T01:cds;Parent=MsG0380017932.01.T01 |
| Chr3 | three_prime_UTR | 102316317 | 102316541 | 102316317 | ID=MsG0380017932.01.T01:three_prime_utr;Parent=MsG0380017932.01.T01 |
| Gene Sequence |
| Protein sequence |
