AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024438.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024438.01.T01 MTR_5g011180 90.244 164 16 0 1 164 1 164 2.33e-109 308
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024438.01.T01 AT1G15220 63.816 152 52 1 1 152 1 149 1.92e-69 207
MsG0580024438.01.T01 AT1G15220 63.816 152 52 1 1 152 1 149 1.92e-69 207

Find 70 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAGCTTGAAGCTGATTT+TGG 0.150882 5:+4995308 MsG0580024438.01.T01:CDS
AACTCAGTTTGTGGCTTTAA+AGG 0.186262 5:+4995766 MsG0580024438.01.T01:three_prime_UTR
TCCTTCTCTCTTGGGGTCAA+TGG 0.256344 5:-4995597 None:intergenic
CAGACATTGCCATTCTTCTT+AGG 0.270281 5:+4994113 MsG0580024438.01.T01:CDS
AAACTTGGGTTCATAGAATA+TGG 0.276087 5:-4995336 None:intergenic
TATGTTTATGAATGTATATT+AGG 0.281446 5:+4995810 MsG0580024438.01.T01:three_prime_UTR
AGTTGGCAGAGTTGCCTAAA+AGG 0.285577 5:-4995747 None:intergenic
AGCATTGTTTCCTTCTCTCT+TGG 0.294607 5:-4995606 None:intergenic
GCATTGTTTCCTTCTCTCTT+GGG 0.304947 5:-4995605 None:intergenic
ATCCGTGATGAAATTCGTTC+TGG 0.340444 5:+4995263 MsG0580024438.01.T01:CDS
AACTCACTGATGAAGAAATA+AGG 0.341928 5:-4993259 None:intergenic
TAAAATTAAAATACCGGTCT+TGG 0.343637 5:-4995861 None:intergenic
TTTGAATAGCTCTTAGTTGC+TGG 0.357704 5:+4995489 MsG0580024438.01.T01:intron
AGCTGTCTGCTTATCAAACT+TGG 0.367020 5:-4995351 None:intergenic
TAGTGGAAACCAACAGGTTT+GGG 0.380780 5:-4993211 None:intergenic
TCTCATACAAAGAAGCTTGT+TGG 0.390188 5:-4993170 None:intergenic
TTAGTTGCTGGTGCAGCTGT+TGG 0.403572 5:+4995501 MsG0580024438.01.T01:CDS
CTGAATTCAATTGTTGTTTG+AGG 0.409757 5:+4993132 None:intergenic
ATAAGCAGACAGCTGCTTTG+TGG 0.419561 5:+4995360 MsG0580024438.01.T01:CDS
TGGTGCAGCTGTTGGAGTGT+GGG 0.430297 5:+4995509 MsG0580024438.01.T01:CDS
ATACCGGTCTTGGAAGTTTG+TGG 0.431011 5:-4995851 None:intergenic
ATGAAGAAATAAGGAGAAAC+GGG 0.443457 5:-4993250 None:intergenic
AACTCTGCCAACTCAGTTTG+TGG 0.446047 5:+4995757 MsG0580024438.01.T01:three_prime_UTR
GAGCTGTAGTGGAAACCAAC+AGG 0.452910 5:-4993217 None:intergenic
GTTGTTTGGGTAGGTTTGAA+TGG 0.453879 5:+4993976 MsG0580024438.01.T01:intron
AAATAAGGAGAAACGGGAAC+GGG 0.457496 5:-4993244 None:intergenic
GATGAAGAAATAAGGAGAAA+CGG 0.457506 5:-4993251 None:intergenic
GTAGTGGAAACCAACAGGTT+TGG 0.460475 5:-4993212 None:intergenic
CATTGTTTCCTTCTCTCTTG+GGG 0.462108 5:-4995604 None:intergenic
GTCTGCTTGAGAATCTTCAA+TGG 0.474404 5:-4994095 None:intergenic
CTGGTGCAGCTGTTGGAGTG+TGG 0.477110 5:+4995508 MsG0580024438.01.T01:CDS
GACGCATAAAATTAAAATAC+CGG 0.500431 5:-4995867 None:intergenic
GACTTAAATCTCTGTGAAGC+AGG 0.503839 5:-4995645 None:intergenic
AGAAACTAATAGTCGATGCC+CGG 0.507321 5:+4994023 MsG0580024438.01.T01:CDS
AGCTGCTTTGTGGTTATCAC+CGG 0.516733 5:+4995370 MsG0580024438.01.T01:CDS
CATTGCCATTCTTCTTAGGA+AGG 0.519020 5:+4994117 MsG0580024438.01.T01:CDS
TGTGACTGATGTCTCTAGCC+CGG 0.529254 5:-4994042 None:intergenic
ATGTATATCTGCTCCACGCT+TGG 0.530571 5:-4995894 None:intergenic
AATGGATTGACTCCCACAAT+CGG 0.532006 5:-4994077 None:intergenic
TTCACAGAGATTTAAGTCAC+AGG 0.538027 5:+4995650 MsG0580024438.01.T01:CDS
GTAGGTTTGAATGGCCAGTA+AGG 0.542316 5:+4993985 MsG0580024438.01.T01:intron
GTGACTGATGTCTCTAGCCC+GGG 0.544108 5:-4994041 None:intergenic
ATCACCACTCCCAAACCTGT+TGG 0.546341 5:+4993202 MsG0580024438.01.T01:five_prime_UTR
ATGTGAGATGCACCGATTGT+GGG 0.552758 5:+4994065 MsG0580024438.01.T01:CDS
ATGTACCTTCCTAAGAAGAA+TGG 0.554145 5:-4994122 None:intergenic
GCTGTCTGCTTATCAAACTT+GGG 0.555802 5:-4995350 None:intergenic
CCACGATCGGAATAGTCAAT+CGG 0.559648 5:-4995718 None:intergenic
TTGAGACTTCCACCTGGTGG+AGG 0.562765 5:+4995676 MsG0580024438.01.T01:CDS
AAAGACTAATGTTCACATCA+TGG 0.563319 5:+4995551 MsG0580024438.01.T01:CDS
TTTAAAGCCACAAACTGAGT+TGG 0.563528 5:-4995764 None:intergenic
GAACGGGGATTGAGCTGTAG+TGG 0.578705 5:-4993228 None:intergenic
GAAATAAGGAGAAACGGGAA+CGG 0.581368 5:-4993245 None:intergenic
AATCCACAAACTTCCAAGAC+CGG 0.582229 5:+4995848 MsG0580024438.01.T01:three_prime_UTR
TTATGCGTCAACACCAAGCG+TGG 0.585712 5:+4995881 MsG0580024438.01.T01:three_prime_UTR
TCCATTGACCCCAAGAGAGA+AGG 0.587254 5:+4995596 MsG0580024438.01.T01:CDS
ACCTTGCAATCTCCTCCACC+AGG 0.588382 5:-4995688 None:intergenic
GAAACCAACAGGTTTGGGAG+TGG 0.593717 5:-4993206 None:intergenic
GAAACTAATAGTCGATGCCC+GGG 0.593981 5:+4994024 MsG0580024438.01.T01:CDS
ACCTGGTGGAGGAGATTGCA+AGG 0.598836 5:+4995687 MsG0580024438.01.T01:CDS
TTCCAGAACGAATTTCATCA+CGG 0.607002 5:-4995265 None:intergenic
TAAAAGGTAAATGCCACGAT+CGG 0.612114 5:-4995731 None:intergenic
CCGATTGACTATTCCGATCG+TGG 0.612426 5:+4995718 MsG0580024438.01.T01:three_prime_UTR
TCACAGAGATTTAAGTCACA+GGG 0.630566 5:+4995651 MsG0580024438.01.T01:CDS
AATGTGAGATGCACCGATTG+TGG 0.638897 5:+4994064 MsG0580024438.01.T01:CDS
ATGGCTCTGAATCTTGTCAG+AGG 0.645586 5:+4995570 MsG0580024438.01.T01:CDS
AATAAGGAGAAACGGGAACG+GGG 0.663745 5:-4993243 None:intergenic
TTGCAATCTCCTCCACCAGG+TGG 0.666835 5:-4995685 None:intergenic
GAGTTGAGACTTCCACCTGG+TGG 0.671496 5:+4995673 MsG0580024438.01.T01:CDS
TTAAATCTCTGTGAAGCAGG+CGG 0.688434 5:-4995642 None:intergenic
AGGGAGTTGAGACTTCCACC+TGG 0.704880 5:+4995670 MsG0580024438.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATAAATTATTTTTTATATG+TGG - Chr5:4994483-4994502 None:intergenic 10.0%
!! GAGATATATATATATTCAAA+AGG - Chr5:4994345-4994364 None:intergenic 15.0%
!! TATGTTTATGAATGTATATT+AGG + Chr5:4995810-4995829 MsG0580024438.01.T01:three_prime_UTR 15.0%
!!! TAAGTTTATTTTTTTCAGTT+GGG - Chr5:4993368-4993387 None:intergenic 15.0%
!! ATATCTTAAATATTTCGATG+TGG - Chr5:4994875-4994894 None:intergenic 20.0%
!! CTACAAATTGAATTGATAAA+AGG + Chr5:4994181-4994200 MsG0580024438.01.T01:intron 20.0%
!! TAACATAAAATGAATCATGA+TGG - Chr5:4993295-4993314 None:intergenic 20.0%
!! TAATACTAATACATGTTGTT+TGG + Chr5:4993962-4993981 MsG0580024438.01.T01:intron 20.0%
!! TAGACTAAATGGTTTAATTA+TGG + Chr5:4993732-4993751 MsG0580024438.01.T01:intron 20.0%
!! TATATATTCAAAAGGAGTTT+AGG - Chr5:4994337-4994356 None:intergenic 20.0%
!! TATCTTAAATATTTCGATGT+GGG - Chr5:4994874-4994893 None:intergenic 20.0%
!! TGAATATATATATATCTCTG+AGG + Chr5:4994347-4994366 MsG0580024438.01.T01:intron 20.0%
!!! AAAATAAAAGTTTCAAGTCA+TGG + Chr5:4994236-4994255 MsG0580024438.01.T01:intron 20.0%
!!! AATACTAATACATGTTGTTT+GGG + Chr5:4993963-4993982 MsG0580024438.01.T01:intron 20.0%
!!! AATTATTTTTTATATGTGGG+TGG - Chr5:4994479-4994498 None:intergenic 20.0%
!!! CGAAATATTTAAGATATAGA+GGG + Chr5:4994878-4994897 MsG0580024438.01.T01:intron 20.0%
!!! GTAAGTTTATTTTTTTCAGT+TGG - Chr5:4993369-4993388 None:intergenic 20.0%
!!! TCGAAATATTTAAGATATAG+AGG + Chr5:4994877-4994896 MsG0580024438.01.T01:intron 20.0%
!!! TGGAAATTTTGTTTTGAATT+GGG + Chr5:4993525-4993544 MsG0580024438.01.T01:intron 20.0%
!!! TTGGAAATTTTGTTTTGAAT+TGG + Chr5:4993524-4993543 MsG0580024438.01.T01:intron 20.0%
! AAATCACATTGTCATGTATT+GGG + Chr5:4994944-4994963 MsG0580024438.01.T01:intron 25.0%
! AACATAGAAAGAAAAACTAG+TGG - Chr5:4993410-4993429 None:intergenic 25.0%
! AACCACAATAATAATTGTCA+TGG - Chr5:4993813-4993832 None:intergenic 25.0%
! ACATAGAAAGAAAAACTAGT+GGG - Chr5:4993409-4993428 None:intergenic 25.0%
! AGAAGGGAATAAAAAAATCA+AGG + Chr5:4994409-4994428 MsG0580024438.01.T01:intron 25.0%
! ATAAAATGAATCATGATGGT+TGG - Chr5:4993291-4993310 None:intergenic 25.0%
! ATCCATGACAATTATTATTG+TGG + Chr5:4993808-4993827 MsG0580024438.01.T01:intron 25.0%
! ATTCATATAAAACTGGGAAA+AGG + Chr5:4994508-4994527 MsG0580024438.01.T01:intron 25.0%
! GAAAATTGTTCAAGTGTTTA+GGG - Chr5:4995237-4995256 None:intergenic 25.0%
! GACGCATAAAATTAAAATAC+CGG - Chr5:4995870-4995889 None:intergenic 25.0%
! TAAAATTAAAATACCGGTCT+TGG - Chr5:4995864-4995883 None:intergenic 25.0%
! TATCAATTTGTAGTGAAGAT+TGG - Chr5:4994702-4994721 None:intergenic 25.0%
! TCAATTCAATTTGTAGAAAC+TGG - Chr5:4994177-4994196 None:intergenic 25.0%
!! AACAACAACATTTTGCATTT+TGG - Chr5:4995005-4995024 None:intergenic 25.0%
!! AATATTTAAGATATAGAGGG+TGG + Chr5:4994881-4994900 MsG0580024438.01.T01:intron 25.0%
!! ACAACAACATTTTGCATTTT+GGG - Chr5:4995004-4995023 None:intergenic 25.0%
!! GAATTGTTTGTTAGAAAGTT+TGG + Chr5:4993497-4993516 MsG0580024438.01.T01:intron 25.0%
!! GGACTGTAAAACAAAATTTT+AGG + Chr5:4994368-4994387 MsG0580024438.01.T01:intron 25.0%
!!! TGTTTGAAAGTGAGATTTTT+TGG + Chr5:4995200-4995219 MsG0580024438.01.T01:intron 25.0%
!!! TTATGTTTTTTTTCGTTGTC+CGG + Chr5:4993695-4993714 MsG0580024438.01.T01:intron 25.0%
!!! TTTCTAGAATTTTGATATGC+TGG + Chr5:4993582-4993601 MsG0580024438.01.T01:intron 25.0%
AAACTTGGGTTCATAGAATA+TGG - Chr5:4995339-4995358 None:intergenic 30.0%
AAAGACTAATGTTCACATCA+TGG + Chr5:4995551-4995570 MsG0580024438.01.T01:CDS 30.0%
AACTCACTGATGAAGAAATA+AGG - Chr5:4993262-4993281 None:intergenic 30.0%
ATAGAGAACAAAAACTGAGA+AGG + Chr5:4994392-4994411 MsG0580024438.01.T01:intron 30.0%
ATGAAGAAATAAGGAGAAAC+GGG - Chr5:4993253-4993272 None:intergenic 30.0%
CAAATCACATTGTCATGTAT+TGG + Chr5:4994943-4994962 MsG0580024438.01.T01:intron 30.0%
GAACTAGGTTAATAATCTCA+GGG + Chr5:4994270-4994289 MsG0580024438.01.T01:intron 30.0%
GATGAAGAAATAAGGAGAAA+CGG - Chr5:4993254-4993273 None:intergenic 30.0%
GGAAAATTGTTCAAGTGTTT+AGG - Chr5:4995238-4995257 None:intergenic 30.0%
GTTGGCATTCATATAAAACT+GGG + Chr5:4994502-4994521 MsG0580024438.01.T01:intron 30.0%
TAAGAGTGAAATGATATCAG+TGG - Chr5:4994748-4994767 None:intergenic 30.0%
TAGAGAACAAAAACTGAGAA+GGG + Chr5:4994393-4994412 MsG0580024438.01.T01:intron 30.0%
TCAATTTGTAGAAACTGGTT+AGG - Chr5:4994172-4994191 None:intergenic 30.0%
TGTTGGCATTCATATAAAAC+TGG + Chr5:4994501-4994520 MsG0580024438.01.T01:intron 30.0%
! AAAAGCATAGAACAAATCCT+AGG + Chr5:4994536-4994555 MsG0580024438.01.T01:intron 30.0%
! ATAGGCTTTTCTAGACTAAA+TGG + Chr5:4993721-4993740 MsG0580024438.01.T01:intron 30.0%
! CTTTGATGAACAACTTTTCA+AGG - Chr5:4994611-4994630 None:intergenic 30.0%
! TGTTAGAAAGTTTGGAATGT+TGG + Chr5:4993505-4993524 MsG0580024438.01.T01:intron 30.0%
! TTTTGAATTGGGTATAGAGA+AGG + Chr5:4993536-4993555 MsG0580024438.01.T01:intron 30.0%
!! TAACGTACTTTTTATCCTCT+GGG - Chr5:4994445-4994464 None:intergenic 30.0%
!! TAGTCTTTTGTTTATGCTTC+TGG - Chr5:4995539-4995558 None:intergenic 30.0%
!! TTTCGTTTTCTTTTCTAGCA+TGG + Chr5:4993662-4993681 MsG0580024438.01.T01:intron 30.0%
!!! ATGGCTAATTTTTTGGAACT+AGG + Chr5:4994255-4994274 MsG0580024438.01.T01:intron 30.0%
!!! CTTTTTTTTTGTAGACCAAG+TGG - Chr5:4993915-4993934 None:intergenic 30.0%
!!! TCAAGTCATGGCTAATTTTT+TGG + Chr5:4994248-4994267 MsG0580024438.01.T01:intron 30.0%
!!! TGTATTTTTTTAGCTTCACC+CGG + Chr5:4993434-4993453 MsG0580024438.01.T01:intron 30.0%
AACCACTATGCACTAAAACT+TGG - Chr5:4995087-4995106 None:intergenic 35.0%
AAGTTGTTCATCAAAGCGAT+CGG + Chr5:4994615-4994634 MsG0580024438.01.T01:intron 35.0%
ACCACTATGCACTAAAACTT+GGG - Chr5:4995086-4995105 None:intergenic 35.0%
ATCCACCAGGAAAAATTTAC+CGG - Chr5:4995392-4995411 None:intergenic 35.0%
ATGTACCTTCCTAAGAAGAA+TGG - Chr5:4994125-4994144 None:intergenic 35.0%
GAATGAAGAGAATGTAAGAG+TGG - Chr5:4994148-4994167 None:intergenic 35.0%
GGAACTAGGTTAATAATCTC+AGG + Chr5:4994269-4994288 MsG0580024438.01.T01:intron 35.0%
GTAATCAAAACTAGAACCAG+CGG - Chr5:4995154-4995173 None:intergenic 35.0%
TAAAAGGTAAATGCCACGAT+CGG - Chr5:4995734-4995753 None:intergenic 35.0%
TAAACATTCCAATTCGAACC+CGG - Chr5:4993456-4993475 None:intergenic 35.0%
TAGAAAGAAAAACTAGTGGG+TGG - Chr5:4993406-4993425 None:intergenic 35.0%
TCAAACACCGTAATCAAAAC+TGG - Chr5:4995187-4995206 None:intergenic 35.0%
TCACAGAGATTTAAGTCACA+GGG + Chr5:4995651-4995670 MsG0580024438.01.T01:CDS 35.0%
TCTCATACAAAGAAGCTTGT+TGG - Chr5:4993173-4993192 None:intergenic 35.0%
TGGATCTAGACATTTGATGT+TGG - Chr5:4993848-4993867 None:intergenic 35.0%
TTCACAGAGATTTAAGTCAC+AGG + Chr5:4995650-4995669 MsG0580024438.01.T01:CDS 35.0%
TTCCAGAACGAATTTCATCA+CGG - Chr5:4995268-4995287 None:intergenic 35.0%
TTTGAATAGCTCTTAGTTGC+TGG + Chr5:4995489-4995508 MsG0580024438.01.T01:intron 35.0%
! CTAATACATGTTGTTTGGGT+AGG + Chr5:4993967-4993986 MsG0580024438.01.T01:intron 35.0%
! GAATTTCATCACGGATTAAC+TGG - Chr5:4995259-4995278 None:intergenic 35.0%
! TATCACCGGTAAATTTTTCC+TGG + Chr5:4995384-4995403 MsG0580024438.01.T01:intron 35.0%
! TTTAAAGCCACAAACTGAGT+TGG - Chr5:4995767-4995786 None:intergenic 35.0%
! TTTAGTGCATAGTGGTTTTC+AGG + Chr5:4995090-4995109 MsG0580024438.01.T01:intron 35.0%
! TTTTACATCATCGTCCTTAC+TGG - Chr5:4994002-4994021 None:intergenic 35.0%
! TTTTTATATGTGGGTGGTGT+TGG - Chr5:4994473-4994492 None:intergenic 35.0%
!! AACGTACTTTTTATCCTCTG+GGG - Chr5:4994444-4994463 None:intergenic 35.0%
!! AACTCAGTTTGTGGCTTTAA+AGG + Chr5:4995766-4995785 MsG0580024438.01.T01:three_prime_UTR 35.0%
!! AATTTTAAAGAGTCACAGCC+TGG - Chr5:4994812-4994831 None:intergenic 35.0%
!! ACAAAGCTTGAAGCTGATTT+TGG + Chr5:4995308-4995327 MsG0580024438.01.T01:CDS 35.0%
!! GTAACGTACTTTTTATCCTC+TGG - Chr5:4994446-4994465 None:intergenic 35.0%
!! TTGATAAAAGGAGCCTTGTT+TGG + Chr5:4994193-4994212 MsG0580024438.01.T01:intron 35.0%
!!! GCTGGTTCTAGTTTTGATTA+CGG + Chr5:4995153-4995172 MsG0580024438.01.T01:intron 35.0%
!!! GTATTTTTTTAGCTTCACCC+GGG + Chr5:4993435-4993454 MsG0580024438.01.T01:intron 35.0%
!!! GTCAGATCCAGTTTTGATTA+CGG + Chr5:4995177-4995196 MsG0580024438.01.T01:intron 35.0%
AAACATTCCAATTCGAACCC+GGG - Chr5:4993455-4993474 None:intergenic 40.0%
AAATAAGGAGAAACGGGAAC+GGG - Chr5:4993247-4993266 None:intergenic 40.0%
AATCCACAAACTTCCAAGAC+CGG + Chr5:4995848-4995867 MsG0580024438.01.T01:three_prime_UTR 40.0%
AGAAACTAATAGTCGATGCC+CGG + Chr5:4994023-4994042 MsG0580024438.01.T01:CDS 40.0%
AGCATTGTTTCCTTCTCTCT+TGG - Chr5:4995609-4995628 None:intergenic 40.0%
AGCTGTCTGCTTATCAAACT+TGG - Chr5:4995354-4995373 None:intergenic 40.0%
ATCCGTGATGAAATTCGTTC+TGG + Chr5:4995263-4995282 MsG0580024438.01.T01:CDS 40.0%
ATCTAGCAACAGAGTTACAG+AGG - Chr5:4993562-4993581 None:intergenic 40.0%
ATTGGCAGTCATGTGTCAAA+GGG - Chr5:4994684-4994703 None:intergenic 40.0%
CAGACATTGCCATTCTTCTT+AGG + Chr5:4994113-4994132 MsG0580024438.01.T01:CDS 40.0%
CATTGCCATTCTTCTTAGGA+AGG + Chr5:4994117-4994136 MsG0580024438.01.T01:CDS 40.0%
CATTGTTTCCTTCTCTCTTG+GGG - Chr5:4995607-4995626 None:intergenic 40.0%
CTAGACATTTGATGTTGGTG+TGG - Chr5:4993843-4993862 None:intergenic 40.0%
CTTACACACTTGAAAACTGC+TGG + Chr5:4994773-4994792 MsG0580024438.01.T01:intron 40.0%
GAAATAAGGAGAAACGGGAA+CGG - Chr5:4993248-4993267 None:intergenic 40.0%
GACTTAAATCTCTGTGAAGC+AGG - Chr5:4995648-4995667 None:intergenic 40.0%
GCATTGTTTCCTTCTCTCTT+GGG - Chr5:4995608-4995627 None:intergenic 40.0%
GCTGTCTGCTTATCAAACTT+GGG - Chr5:4995353-4995372 None:intergenic 40.0%
GTCTAGAAAAGCCTATTCAC+CGG - Chr5:4993717-4993736 None:intergenic 40.0%
GTCTGCTTGAGAATCTTCAA+TGG - Chr5:4994098-4994117 None:intergenic 40.0%
GTTGTTTGGGTAGGTTTGAA+TGG + Chr5:4993976-4993995 MsG0580024438.01.T01:intron 40.0%
TAGTGGAAACCAACAGGTTT+GGG - Chr5:4993214-4993233 None:intergenic 40.0%
TTAAATCTCTGTGAAGCAGG+CGG - Chr5:4995645-4995664 None:intergenic 40.0%
! AAGAAAAACTAGTGGGTGGA+AGG - Chr5:4993402-4993421 None:intergenic 40.0%
! GATCGTGGCATTTACCTTTT+AGG + Chr5:4995733-4995752 MsG0580024438.01.T01:three_prime_UTR 40.0%
! TTTTGTAGTATGCTGCTCCT+AGG - Chr5:4994556-4994575 None:intergenic 40.0%
! TTTTTCGTTGTCCGGTGAAT+AGG + Chr5:4993703-4993722 MsG0580024438.01.T01:intron 40.0%
!! AATGGATTGACTCCCACAAT+CGG - Chr5:4994080-4994099 None:intergenic 40.0%
!! GTCATGTATTGGGTTAGTTG+AGG + Chr5:4994954-4994973 MsG0580024438.01.T01:intron 40.0%
!! TCCCAAGTTTTAGTGCATAG+TGG + Chr5:4995082-4995101 MsG0580024438.01.T01:intron 40.0%
!! TCGTTCTGGAAAAAGTGACA+AGG + Chr5:4995277-4995296 MsG0580024438.01.T01:CDS 40.0%
AAAGCGATCGGATGAGAACT+TGG + Chr5:4994627-4994646 MsG0580024438.01.T01:intron 45.0%
AACTCTGCCAACTCAGTTTG+TGG + Chr5:4995757-4995776 MsG0580024438.01.T01:three_prime_UTR 45.0%
AATAAGGAGAAACGGGAACG+GGG - Chr5:4993246-4993265 None:intergenic 45.0%
ACCTGAAACTCACACACACA+GGG - Chr5:4993884-4993903 None:intergenic 45.0%
ACTTGGGAGAAAACGACAGT+TGG - Chr5:4995070-4995089 None:intergenic 45.0%
AGTTGGCAGAGTTGCCTAAA+AGG - Chr5:4995750-4995769 None:intergenic 45.0%
ATACCGGTCTTGGAAGTTTG+TGG - Chr5:4995854-4995873 None:intergenic 45.0%
ATGTATATCTGCTCCACGCT+TGG - Chr5:4995897-4995916 None:intergenic 45.0%
CAAGGAAAAGTAAACCCCAG+AGG + Chr5:4994427-4994446 MsG0580024438.01.T01:intron 45.0%
CCACGATCGGAATAGTCAAT+CGG - Chr5:4995721-4995740 None:intergenic 45.0%
CCATGCAACAACTCCAAACA+AGG - Chr5:4994209-4994228 None:intergenic 45.0%
CTTGGGAGAAAACGACAGTT+GGG - Chr5:4995069-4995088 None:intergenic 45.0%
GAAACTAATAGTCGATGCCC+GGG + Chr5:4994024-4994043 MsG0580024438.01.T01:CDS 45.0%
GATTGGCAGTCATGTGTCAA+AGG - Chr5:4994685-4994704 None:intergenic 45.0%
GTAGGTTTGAATGGCCAGTA+AGG + Chr5:4993985-4994004 MsG0580024438.01.T01:intron 45.0%
! AGCTGCTTTGTGGTTATCAC+CGG + Chr5:4995370-4995389 MsG0580024438.01.T01:CDS 45.0%
! ATAAGCAGACAGCTGCTTTG+TGG + Chr5:4995360-4995379 MsG0580024438.01.T01:CDS 45.0%
! CACCGGTAAATTTTTCCTGG+TGG + Chr5:4995387-4995406 MsG0580024438.01.T01:intron 45.0%
! CCTTGTTTGGAGTTGTTGCA+TGG + Chr5:4994206-4994225 MsG0580024438.01.T01:intron 45.0%
! GTAGTGGAAACCAACAGGTT+TGG - Chr5:4993215-4993234 None:intergenic 45.0%
!! AATGTGAGATGCACCGATTG+TGG + Chr5:4994064-4994083 MsG0580024438.01.T01:CDS 45.0%
!! ATGGCTCTGAATCTTGTCAG+AGG + Chr5:4995570-4995589 MsG0580024438.01.T01:CDS 45.0%
!! ATGTGAGATGCACCGATTGT+GGG + Chr5:4994065-4994084 MsG0580024438.01.T01:CDS 45.0%
!! GTTGGGCTGGTTTCACATAT+TGG - Chr5:4995052-4995071 None:intergenic 45.0%
!! ATATAAAAAATAATTTATGT+TGG + Chr5:4994484-4994503 MsG0580024438.01.T01:intron 5.0%
!!! ATAAATTATTTTTTATATGT+GGG - Chr5:4994482-4994501 None:intergenic 5.0%
!!! TTCAATTTTTATTAAAAAAA+TGG + Chr5:4995025-4995044 MsG0580024438.01.T01:intron 5.0%
ACTAGAACCAGCGGTTTGAC+CGG - Chr5:4995145-4995164 None:intergenic 50.0%
ATCACCACTCCCAAACCTGT+TGG + Chr5:4993202-4993221 MsG0580024438.01.T01:five_prime_UTR 50.0%
CACCTGAAACTCACACACAC+AGG - Chr5:4993885-4993904 None:intergenic 50.0%
CATCAAGCGATTGAGCCACA+TGG + Chr5:4994842-4994861 MsG0580024438.01.T01:intron 50.0%
CCGATTGACTATTCCGATCG+TGG + Chr5:4995718-4995737 MsG0580024438.01.T01:three_prime_UTR 50.0%
CCTGAAACTCACACACACAG+GGG - Chr5:4993883-4993902 None:intergenic 50.0%
CTGTGTGTGTGAGTTTCAGG+TGG + Chr5:4993883-4993902 MsG0580024438.01.T01:intron 50.0%
GAAACCAACAGGTTTGGGAG+TGG - Chr5:4993209-4993228 None:intergenic 50.0%
GAAGTGACACTTGCGATTGG+AGG - Chr5:4994980-4994999 None:intergenic 50.0%
GGTGAAGTGACACTTGCGAT+TGG - Chr5:4994983-4995002 None:intergenic 50.0%
TCCATTGACCCCAAGAGAGA+AGG + Chr5:4995596-4995615 MsG0580024438.01.T01:CDS 50.0%
TCCTTCTCTCTTGGGGTCAA+TGG - Chr5:4995600-4995619 None:intergenic 50.0%
TGTGACTGATGTCTCTAGCC+CGG - Chr5:4994045-4994064 None:intergenic 50.0%
TTAGTTGCTGGTGCAGCTGT+TGG + Chr5:4995501-4995520 MsG0580024438.01.T01:CDS 50.0%
TTATGCGTCAACACCAAGCG+TGG + Chr5:4995881-4995900 MsG0580024438.01.T01:three_prime_UTR 50.0%
TTCAGGTGGTTCTTGCCACT+TGG + Chr5:4993897-4993916 MsG0580024438.01.T01:intron 50.0%
! GAGCTGTAGTGGAAACCAAC+AGG - Chr5:4993220-4993239 None:intergenic 50.0%
!! ATATGTGGGTGGTGTTGGTG+TGG - Chr5:4994468-4994487 None:intergenic 50.0%
!! GAGAGTGCTTTCAATCCACC+AGG - Chr5:4995405-4995424 None:intergenic 50.0%
!! TAGTGGTTTTCAGGCCCGAA+TGG + Chr5:4995099-4995118 MsG0580024438.01.T01:intron 50.0%
!! TTTTCAGGCCCGAATGGACA+GGG + Chr5:4995105-4995124 MsG0580024438.01.T01:intron 50.0%
ACACACACAGGGGTGGATCT+AGG - Chr5:4993873-4993892 None:intergenic 55.0%
ACACACAGGGGTGGATCTAG+GGG - Chr5:4993871-4993890 None:intergenic 55.0%
ACCTGGTGGAGGAGATTGCA+AGG + Chr5:4995687-4995706 MsG0580024438.01.T01:CDS 55.0%
ACCTTGCAATCTCCTCCACC+AGG - Chr5:4995691-4995710 None:intergenic 55.0%
AGCTTCACCCGGGTTCGAAT+TGG + Chr5:4993445-4993464 MsG0580024438.01.T01:intron 55.0%
AGGGAGTTGAGACTTCCACC+TGG + Chr5:4995670-4995689 MsG0580024438.01.T01:CDS 55.0%
CAAGCGATTGAGCCACATGG+AGG + Chr5:4994845-4994864 MsG0580024438.01.T01:intron 55.0%
CACACACAGGGGTGGATCTA+GGG - Chr5:4993872-4993891 None:intergenic 55.0%
CCCCTGTGTGTGTGAGTTTC+AGG + Chr5:4993880-4993899 MsG0580024438.01.T01:intron 55.0%
CGATGTGGGATTCCTCCATG+TGG - Chr5:4994860-4994879 None:intergenic 55.0%
CTAGAACCAGCGGTTTGACC+GGG - Chr5:4995144-4995163 None:intergenic 55.0%
GAAACTCACACACACAGGGG+TGG - Chr5:4993880-4993899 None:intergenic 55.0%
GAACGGGGATTGAGCTGTAG+TGG - Chr5:4993231-4993250 None:intergenic 55.0%
GACCTATGCCCTGTCCATTC+GGG - Chr5:4995116-4995135 None:intergenic 55.0%
GAGTTGAGACTTCCACCTGG+TGG + Chr5:4995673-4995692 MsG0580024438.01.T01:CDS 55.0%
GCTGGTGCATGTACTTGACC+AGG + Chr5:4994791-4994810 MsG0580024438.01.T01:intron 55.0%
GGACCTATGCCCTGTCCATT+CGG - Chr5:4995117-4995136 None:intergenic 55.0%
GGAGAAAACGACAGTTGGGC+TGG - Chr5:4995065-4995084 None:intergenic 55.0%
GTGACTGATGTCTCTAGCCC+GGG - Chr5:4994044-4994063 None:intergenic 55.0%
TGGTGCAGCTGTTGGAGTGT+GGG + Chr5:4995509-4995528 MsG0580024438.01.T01:CDS 55.0%
TTGAGACTTCCACCTGGTGG+AGG + Chr5:4995676-4995695 MsG0580024438.01.T01:CDS 55.0%
TTGCAATCTCCTCCACCAGG+TGG - Chr5:4995688-4995707 None:intergenic 55.0%
!! GTTTTCAGGCCCGAATGGAC+AGG + Chr5:4995104-4995123 MsG0580024438.01.T01:intron 55.0%
AGTGGGTGGAAGGCGATGAC+AGG - Chr5:4993392-4993411 None:intergenic 60.0%
CAGGGCATAGGTCCAGTTCC+CGG + Chr5:4995123-4995142 MsG0580024438.01.T01:intron 60.0%
CTGGTGCAGCTGTTGGAGTG+TGG + Chr5:4995508-4995527 MsG0580024438.01.T01:CDS 60.0%
GTGGGTGGAAGGCGATGACA+GGG - Chr5:4993391-4993410 None:intergenic 60.0%
CACAGGGGTGGATCTAGGGG+TGG - Chr5:4993868-4993887 None:intergenic 65.0%
CCAGCGGTTTGACCGGGAAC+TGG - Chr5:4995138-4995157 None:intergenic 65.0%
CCAGTTCCCGGTCAAACCGC+TGG + Chr5:4995135-4995154 MsG0580024438.01.T01:intron 65.0%
GGCCCGAATGGACAGGGCAT+AGG + Chr5:4995111-4995130 MsG0580024438.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 4993144 4995959 4993144 ID=MsG0580024438.01;Name=MsG0580024438.01
Chr5 mRNA 4993144 4995959 4993144 ID=MsG0580024438.01.T01;Parent=MsG0580024438.01;Name=MsG0580024438.01.T01;_AED=0.36;_eAED=0.36;_QI=137|1|1|1|0.66|0.5|4|243|164
Chr5 exon 4993144 4993274 4993144 ID=MsG0580024438.01.T01:exon:18993;Parent=MsG0580024438.01.T01
Chr5 exon 4993989 4994138 4993989 ID=MsG0580024438.01.T01:exon:18994;Parent=MsG0580024438.01.T01
Chr5 exon 4995260 4995391 4995260 ID=MsG0580024438.01.T01:exon:18995;Parent=MsG0580024438.01.T01
Chr5 exon 4995498 4995959 4995498 ID=MsG0580024438.01.T01:exon:18996;Parent=MsG0580024438.01.T01
Chr5 five_prime_UTR 4993144 4993274 4993144 ID=MsG0580024438.01.T01:five_prime_utr;Parent=MsG0580024438.01.T01
Chr5 five_prime_UTR 4993989 4993994 4993989 ID=MsG0580024438.01.T01:five_prime_utr;Parent=MsG0580024438.01.T01
Chr5 CDS 4993995 4994138 4993995 ID=MsG0580024438.01.T01:cds;Parent=MsG0580024438.01.T01
Chr5 CDS 4995260 4995391 4995260 ID=MsG0580024438.01.T01:cds;Parent=MsG0580024438.01.T01
Chr5 CDS 4995498 4995716 4995498 ID=MsG0580024438.01.T01:cds;Parent=MsG0580024438.01.T01
Chr5 three_prime_UTR 4995717 4995959 4995717 ID=MsG0580024438.01.T01:three_prime_utr;Parent=MsG0580024438.01.T01
Gene Sequence

>MsG0580024438.01.T01

ATGGCCAGTAAGGACGATGATGTAAAAGAGAAACTAATAGTCGATGCCCGGGCTAGAGACATCAGTCACAATGTGAGATGCACCGATTGTGGGAGTCAATCCATTGAAGATTCTCAAGCAGACATTGCCATTCTTCTTAGGAAGTTAATCCGTGATGAAATTCGTTCTGGAAAAAGTGACAAGGAGATCTACACAAAGCTTGAAGCTGATTTTGGAGAGTCCATATTCTATGAACCCAAGTTTGATAAGCAGACAGCTGCTTTGTGGTTATCACCGCTCTTAGTTGCTGGTGCAGCTGTTGGAGTGTGGGCTTACCAGAAGCATAAACAAAAGACTAATGTTCACATCATGGCTCTGAATCTTGTCAGAGGTGTTCCATTGACCCCAAGAGAGAAGGAAACAATGCTTGACGTTCTTACACCGCCTGCTTCACAGAGATTTAAGTCACAGGGAGTTGAGACTTCCACCTGGTGGAGGAGATTGCAAGGTCAATGA

Protein sequence

>MsG0580024438.01.T01

MASKDDDVKEKLIVDARARDISHNVRCTDCGSQSIEDSQADIAILLRKLIRDEIRSGKSDKEIYTKLEADFGESIFYEPKFDKQTAALWLSPLLVAGAAVGVWAYQKHKQKTNVHIMALNLVRGVPLTPREKETMLDVLTPPASQRFKSQGVETSTWWRRLQGQ*