AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007710.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007710.01.T01 MTR_2g030390 96.510 659 22 1 1 659 1 658 0.0 1253
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007710.01.T01 AT3G24080 45.250 579 268 13 5 555 8 565 1.80e-108 341
MsG0280007710.01.T01 AT3G24080 45.250 579 268 13 5 555 8 565 1.90e-108 341
MsG0280007710.01.T01 AT3G24080 45.250 579 268 13 5 555 8 565 2.00e-108 341
MsG0280007710.01.T01 AT3G24080 45.250 579 268 13 5 555 8 565 2.49e-108 341

Find 114 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACCTGTCTTCTCCTTTA+AGG 0.067645 2:-19516204 None:intergenic
ATTGAGGAGGGACCAGATTT+TGG 0.223663 2:+19516044 MsG0280007710.01.T01:CDS
TAAGCTTCAATTCCTCTTCT+TGG 0.247682 2:-19517228 None:intergenic
ATTCTTTGATGCTTTGATTA+AGG 0.251168 2:+19515875 MsG0280007710.01.T01:CDS
ATCATTCTGTCATATTCCTC+TGG 0.284675 2:-19516713 None:intergenic
CCACATTCATCCCAATCTTT+AGG 0.290694 2:-19516857 None:intergenic
GATCCTTCGTGCAGCAAGTT+TGG 0.295537 2:+19517291 MsG0280007710.01.T01:CDS
AAAAGCAAACACAGCAAGTT+TGG 0.300133 2:+19517405 MsG0280007710.01.T01:CDS
GAAGCGTAAAACTGCACTTT+TGG 0.321590 2:+19517012 MsG0280007710.01.T01:CDS
TGAGGAATTTGAGGAGAAAC+TGG 0.339212 2:+19516247 MsG0280007710.01.T01:CDS
TACTTGGGCTTCCTAAAGAT+TGG 0.346122 2:+19516846 MsG0280007710.01.T01:CDS
TGAGATGGAAATTGAGAGGC+AGG 0.355422 2:+19516400 MsG0280007710.01.T01:CDS
AAGCCAAGAGAAGGGAAAAC+AGG 0.359507 2:+19517536 MsG0280007710.01.T01:CDS
ATCCTTCGTGCAGCAAGTTT+GGG 0.366521 2:+19517292 MsG0280007710.01.T01:CDS
AAAACAAAACCTAACAGATT+TGG 0.379299 2:+19517127 MsG0280007710.01.T01:CDS
GAGTGAAGATGAGGAATTTG+AGG 0.381021 2:+19516238 MsG0280007710.01.T01:CDS
TGCTCGTAAGGTGGAGGGTT+CGG 0.395725 2:+19516475 MsG0280007710.01.T01:CDS
TCCTCTTTATCACCAAAATC+TGG 0.405490 2:-19516056 None:intergenic
GTATCCAGGCCAAATCTGTT+AGG 0.416690 2:-19517136 None:intergenic
TAGATTATGAGGACACAGTT+GGG 0.421516 2:+19517074 MsG0280007710.01.T01:CDS
ACTTGGGCTTCCTAAAGATT+GGG 0.423740 2:+19516847 MsG0280007710.01.T01:CDS
TCATCGATCAATAGTATCTC+TGG 0.430675 2:-19517160 None:intergenic
AGCAGCAGAAAAGGATGGCT+TGG 0.438918 2:+19516163 MsG0280007710.01.T01:CDS
TTCAATTCCTCTTCTTGGTA+AGG 0.450588 2:-19517223 None:intergenic
CTTCCGACTACTACCTTCCT+CGG 0.452952 2:-19516987 None:intergenic
GATACTATTGATCGATGATA+AGG 0.458126 2:+19517165 MsG0280007710.01.T01:CDS
GAGAGAGGCAATACGACAAA+AGG 0.459308 2:+19516547 MsG0280007710.01.T01:CDS
AGATCCTGTTCTTAAGCAAA+AGG 0.465168 2:+19515908 MsG0280007710.01.T01:CDS
GAGTCGAGACTTAAAGCATA+TGG 0.468288 2:+19517577 MsG0280007710.01.T01:CDS
GTCTACTGCAGAATTAGAAA+AGG 0.471726 2:+19516682 MsG0280007710.01.T01:CDS
CTAATTCTGCAGTAGACAAA+GGG 0.472024 2:-19516676 None:intergenic
TCATTCTGTCATATTCCTCT+GGG 0.472452 2:-19516712 None:intergenic
TGAGCAAGAGGAGTTGAAAC+AGG 0.482808 2:+19516130 MsG0280007710.01.T01:CDS
AATGAGAAAGGTATATCAAA+TGG 0.485679 2:+19516086 MsG0280007710.01.T01:CDS
AAATCCAGGGGATAGAGTGC+TGG 0.488077 2:+19516448 MsG0280007710.01.T01:CDS
TACTAGTGATGATGATCTCA+TGG 0.493040 2:+19516937 MsG0280007710.01.T01:CDS
TTTCAACTCTAAGAGTGATA+AGG 0.498953 2:+19515851 MsG0280007710.01.T01:CDS
GATGAATGTGGATCTGATGG+TGG 0.500163 2:+19516869 MsG0280007710.01.T01:CDS
GGGTCATGCTCGTAAGGTGG+AGG 0.503285 2:+19516469 MsG0280007710.01.T01:CDS
GACGTGCTAGAATCAGCCTT+GGG 0.504176 2:-19517448 None:intergenic
TGATGAGAAGAGTAAAGATA+AGG 0.513195 2:+19515977 MsG0280007710.01.T01:CDS
GCAGCAGAAAAGGATGGCTT+GGG 0.515479 2:+19516164 MsG0280007710.01.T01:CDS
AGAGATTTCAGAAGATGAGA+TGG 0.521290 2:+19516385 MsG0280007710.01.T01:CDS
AAAACCTAACAGATTTGGCC+TGG 0.522228 2:+19517132 MsG0280007710.01.T01:CDS
GAGGATGAAACAAATGAGAA+AGG 0.523006 2:+19516074 MsG0280007710.01.T01:CDS
CTGAAAGCAGCAGAAAAGGA+TGG 0.523891 2:+19516158 MsG0280007710.01.T01:CDS
CTCACCTTAAAGGAGAAGAC+AGG 0.529520 2:+19516200 MsG0280007710.01.T01:CDS
CAAGGTAGAGAGTGAAGATG+AGG 0.530933 2:+19516229 MsG0280007710.01.T01:CDS
GACTTATGCTGATGAGCAAG+AGG 0.531868 2:+19516118 MsG0280007710.01.T01:CDS
AAAGAGCAAAGAGGAGAGAG+AGG 0.532174 2:+19516532 MsG0280007710.01.T01:CDS
ATGAATGTGGATCTGATGGT+GGG 0.532471 2:+19516870 MsG0280007710.01.T01:CDS
GAAAGCAAGACAAATGATGA+TGG 0.538249 2:+19517036 MsG0280007710.01.T01:CDS
ACACAGAAGAATCAAAATCA+AGG 0.538980 2:+19517512 MsG0280007710.01.T01:CDS
AGTGCTGGGTCATGCTCGTA+AGG 0.540823 2:+19516463 MsG0280007710.01.T01:CDS
AGATTATGAGGACACAGTTG+GGG 0.541091 2:+19517075 MsG0280007710.01.T01:CDS
TAGTGAGGGTGAAGAAGACA+TGG 0.541771 2:+19516793 MsG0280007710.01.T01:CDS
TCTAATTCTGCAGTAGACAA+AGG 0.542118 2:-19516677 None:intergenic
TTAGATTATGAGGACACAGT+TGG 0.543563 2:+19517073 MsG0280007710.01.T01:CDS
GTTAACTTCAAACAATGTTG+TGG 0.543762 2:+19517375 MsG0280007710.01.T01:CDS
TGACCCAGCACTCTATCCCC+TGG 0.546475 2:-19516452 None:intergenic
ATAGTATCTCTGGAGTATCC+AGG 0.549189 2:-19517150 None:intergenic
AAAGATACATGCTGAAGATG+AGG 0.550832 2:+19517260 MsG0280007710.01.T01:CDS
GGCAAAGCATTTGATTGAGG+AGG 0.551984 2:+19516031 MsG0280007710.01.T01:CDS
CTCATCAAACAGTTGTGTTG+TGG 0.554487 2:+19517474 MsG0280007710.01.T01:CDS
ACTTGCTCCTTACCAAGAAG+AGG 0.555311 2:+19517216 MsG0280007710.01.T01:CDS
ACTATTTCAAGAACAAAATG+TGG 0.558440 2:+19516315 MsG0280007710.01.T01:CDS
AGGAAGGTAGTAGTCGGAAG+AGG 0.560258 2:+19516990 MsG0280007710.01.T01:CDS
TTCCGACTACTACCTTCCTC+GGG 0.560833 2:-19516986 None:intergenic
AATCAAGGAAAGCCAAGAGA+AGG 0.564095 2:+19517527 MsG0280007710.01.T01:CDS
TATTGGTTCACCTTCACACT+CGG 0.566868 2:+19515779 MsG0280007710.01.T01:CDS
AATCCAGGGGATAGAGTGCT+GGG 0.568166 2:+19516449 MsG0280007710.01.T01:CDS
AAAGGATGGCTTGGGAGATG+AGG 0.568697 2:+19516172 MsG0280007710.01.T01:CDS
ATCAAGGAAAGCCAAGAGAA+GGG 0.568922 2:+19517528 MsG0280007710.01.T01:CDS
TGGGATGAATGTGGATCTGA+TGG 0.570198 2:+19516866 MsG0280007710.01.T01:CDS
TGACGTGCTAGAATCAGCCT+TGG 0.572904 2:-19517449 None:intergenic
GGCAATACGACAAAAGGAAA+GGG 0.576585 2:+19516553 MsG0280007710.01.T01:CDS
GCAAAGCATTTGATTGAGGA+GGG 0.577160 2:+19516032 MsG0280007710.01.T01:CDS
AGGCAATACGACAAAAGGAA+AGG 0.579482 2:+19516552 MsG0280007710.01.T01:CDS
CATGCTGAAGATGAGGGCTA+AGG 0.580350 2:+19517267 MsG0280007710.01.T01:CDS
AAGATACATGCTGAAGATGA+GGG 0.584857 2:+19517261 MsG0280007710.01.T01:CDS
ACGACAAAAGGAAAGGGATG+AGG 0.586281 2:+19516559 MsG0280007710.01.T01:CDS
TTATGAGGACACAGTTGGGG+GGG 0.587460 2:+19517078 MsG0280007710.01.T01:CDS
CCTAAAGATTGGGATGAATG+TGG 0.587753 2:+19516857 MsG0280007710.01.T01:CDS
AAAGAGGACATTCCCGAGGA+AGG 0.588781 2:+19516974 MsG0280007710.01.T01:CDS
TATGCTTTAAGTCTCGACTC+TGG 0.591074 2:-19517574 None:intergenic
AAAAGATAAAGAAGATTGCA+GGG 0.591451 2:+19516633 MsG0280007710.01.T01:CDS
GCTGGGTCATGCTCGTAAGG+TGG 0.591483 2:+19516466 MsG0280007710.01.T01:CDS
AACTTCAAACAATGTTGTGG+AGG 0.597494 2:+19517378 MsG0280007710.01.T01:CDS
GAGAAAGGTATATCAAATGG+TGG 0.598159 2:+19516089 MsG0280007710.01.T01:CDS
GGAGAAGACAGGTGAAGACA+AGG 0.599497 2:+19516211 MsG0280007710.01.T01:CDS
AGCCAAGAGAAGGGAAAACA+GGG 0.602506 2:+19517537 MsG0280007710.01.T01:CDS
GGTCATGCTCGTAAGGTGGA+GGG 0.605836 2:+19516470 MsG0280007710.01.T01:CDS
GGTGGCAAAGCATTTGATTG+AGG 0.605973 2:+19516028 MsG0280007710.01.T01:CDS
CACAACACAACTGTTTGATG+AGG 0.608834 2:-19517473 None:intergenic
GATTATGAGGACACAGTTGG+GGG 0.611884 2:+19517076 MsG0280007710.01.T01:CDS
GATGCAAGAGATACAAGAGA+AGG 0.616907 2:+19516607 MsG0280007710.01.T01:CDS
AGTGATGATGATCTCATGGA+AGG 0.617533 2:+19516941 MsG0280007710.01.T01:CDS
GAAGATAAATAAGAAGCCCA+AGG 0.619096 2:+19517432 MsG0280007710.01.T01:CDS
TCATCATCTTCCGAGTGTGA+AGG 0.624572 2:-19515789 None:intergenic
TTCCCGAGGAAGGTAGTAGT+CGG 0.625706 2:+19516984 MsG0280007710.01.T01:CDS
AAGATGAGATGGAAATTGAG+AGG 0.629773 2:+19516396 MsG0280007710.01.T01:CDS
ATTATGAGGACACAGTTGGG+GGG 0.631668 2:+19517077 MsG0280007710.01.T01:CDS
TGCGAAGTATTATAACGAAG+AGG 0.635980 2:+19516751 MsG0280007710.01.T01:CDS
CTCAAATATCAAGATAGACG+AGG 0.643202 2:+19515680 MsG0280007710.01.T01:CDS
TACCCAAACTTGCTGCACGA+AGG 0.643872 2:-19517294 None:intergenic
ATCAAACAGTTGTGTTGTGG+AGG 0.648436 2:+19517477 MsG0280007710.01.T01:CDS
AGAGCAGAGAAAGAGCAAAG+AGG 0.649070 2:+19516523 MsG0280007710.01.T01:CDS
AGAAAAGGAGTTTGACCCAG+AGG 0.654123 2:+19516697 MsG0280007710.01.T01:CDS
TAGACGAGGAATATGCTCGT+AGG 0.664106 2:+19515694 MsG0280007710.01.T01:CDS
CTATTTCAAGAACAAAATGT+GGG 0.673159 2:+19516316 MsG0280007710.01.T01:CDS
TGAGCATAACAAGAGGCGAG+AGG 0.702904 2:+19515719 MsG0280007710.01.T01:CDS
GTAGGTTTGAGCATAACAAG+AGG 0.707686 2:+19515712 MsG0280007710.01.T01:CDS
GTAAGGTGGAGGGTTCGGTG+AGG 0.731572 2:+19516480 MsG0280007710.01.T01:CDS
AATGTGGGTAGACAAGAATG+CGG 0.745968 2:+19516331 MsG0280007710.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTATAAATTAGATTATG+AGG + Chr2:19517063-19517082 MsG0280007710.01.T01:CDS 15.0%
!! ATGAAGAATTGAAAAAGAAA+GGG + Chr2:19515754-19515773 MsG0280007710.01.T01:CDS 20.0%
!! TATGAAGAATTGAAAAAGAA+AGG + Chr2:19515753-19515772 MsG0280007710.01.T01:CDS 20.0%
! AAAAAGAGGATGATTTACTT+GGG + Chr2:19516831-19516850 MsG0280007710.01.T01:CDS 25.0%
! AAAAAGATAAAGAAGATTGC+AGG + Chr2:19516632-19516651 MsG0280007710.01.T01:CDS 25.0%
! AAAACAAAACCTAACAGATT+TGG + Chr2:19517127-19517146 MsG0280007710.01.T01:CDS 25.0%
! AAAAGATAAAGAAGATTGCA+GGG + Chr2:19516633-19516652 MsG0280007710.01.T01:CDS 25.0%
! ACTATTTCAAGAACAAAATG+TGG + Chr2:19516315-19516334 MsG0280007710.01.T01:CDS 25.0%
! ATTCTTTGATGCTTTGATTA+AGG + Chr2:19515875-19515894 MsG0280007710.01.T01:CDS 25.0%
! CTATTTCAAGAACAAAATGT+GGG + Chr2:19516316-19516335 MsG0280007710.01.T01:CDS 25.0%
! TAAGAAGAAAAAGAGGTTAA+AGG + Chr2:19517315-19517334 MsG0280007710.01.T01:CDS 25.0%
! TGAAGAATTGAAAAAGAAAG+GGG + Chr2:19515755-19515774 MsG0280007710.01.T01:CDS 25.0%
!! AATGAGAAAGGTATATCAAA+TGG + Chr2:19516086-19516105 MsG0280007710.01.T01:CDS 25.0%
!! TTTTCAATTCTTCATAACGT+TGG - Chr2:19515749-19515768 None:intergenic 25.0%
!!! AAATCTGTTAGGTTTTGTTT+TGG - Chr2:19517128-19517147 None:intergenic 25.0%
!!! GAAAAAGTCAATGTTTTTGA+AGG + Chr2:19516001-19516020 MsG0280007710.01.T01:CDS 25.0%
ACACAGAAGAATCAAAATCA+AGG + Chr2:19517512-19517531 MsG0280007710.01.T01:CDS 30.0%
GAAAAAGAGGATGATTTACT+TGG + Chr2:19516830-19516849 MsG0280007710.01.T01:CDS 30.0%
GATACTATTGATCGATGATA+AGG + Chr2:19517165-19517184 MsG0280007710.01.T01:CDS 30.0%
GTTAACTTCAAACAATGTTG+TGG + Chr2:19517375-19517394 MsG0280007710.01.T01:CDS 30.0%
TGATGAGAAGAGTAAAGATA+AGG + Chr2:19515977-19515996 MsG0280007710.01.T01:CDS 30.0%
TTGAAAAAGAAAGGGGTTAT+TGG + Chr2:19515762-19515781 MsG0280007710.01.T01:CDS 30.0%
! AATGCGGAGATTTTAAATGT+TGG + Chr2:19516347-19516366 MsG0280007710.01.T01:CDS 30.0%
! ATGACTCAGAACATTTTTGA+TGG + Chr2:19515633-19515652 MsG0280007710.01.T01:CDS 30.0%
! TTTCAACTCTAAGAGTGATA+AGG + Chr2:19515851-19515870 MsG0280007710.01.T01:CDS 30.0%
!! TTAGTTTTCAGGAAAATCCA+GGG + Chr2:19516435-19516454 MsG0280007710.01.T01:CDS 30.0%
!!! AGAGTATGAAGTTAGTTTTC+AGG + Chr2:19516424-19516443 MsG0280007710.01.T01:CDS 30.0%
!!! TCATCCTCTTTTTCAAAATC+TGG - Chr2:19516824-19516843 None:intergenic 30.0%
AAAAGCAAACACAGCAAGTT+TGG + Chr2:19517405-19517424 MsG0280007710.01.T01:CDS 35.0%
AAAGATACATGCTGAAGATG+AGG + Chr2:19517260-19517279 MsG0280007710.01.T01:CDS 35.0%
AACTTCAAACAATGTTGTGG+AGG + Chr2:19517378-19517397 MsG0280007710.01.T01:CDS 35.0%
AAGATACATGCTGAAGATGA+GGG + Chr2:19517261-19517280 MsG0280007710.01.T01:CDS 35.0%
AAGATGAGATGGAAATTGAG+AGG + Chr2:19516396-19516415 MsG0280007710.01.T01:CDS 35.0%
AGAGATTTCAGAAGATGAGA+TGG + Chr2:19516385-19516404 MsG0280007710.01.T01:CDS 35.0%
AGATCCTGTTCTTAAGCAAA+AGG + Chr2:19515908-19515927 MsG0280007710.01.T01:CDS 35.0%
ATCATTCTGTCATATTCCTC+TGG - Chr2:19516716-19516735 None:intergenic 35.0%
CTAATTCTGCAGTAGACAAA+GGG - Chr2:19516679-19516698 None:intergenic 35.0%
CTCAAATATCAAGATAGACG+AGG + Chr2:19515680-19515699 MsG0280007710.01.T01:CDS 35.0%
GAAAGCAAGACAAATGATGA+TGG + Chr2:19517036-19517055 MsG0280007710.01.T01:CDS 35.0%
GAAGATAAATAAGAAGCCCA+AGG + Chr2:19517432-19517451 MsG0280007710.01.T01:CDS 35.0%
GAGGATGAAACAAATGAGAA+AGG + Chr2:19516074-19516093 MsG0280007710.01.T01:CDS 35.0%
GTCTACTGCAGAATTAGAAA+AGG + Chr2:19516682-19516701 MsG0280007710.01.T01:CDS 35.0%
GTTTGGGTAAGAAGAAAAAG+AGG + Chr2:19517308-19517327 MsG0280007710.01.T01:CDS 35.0%
TAAGCTTCAATTCCTCTTCT+TGG - Chr2:19517231-19517250 None:intergenic 35.0%
TAGATTATGAGGACACAGTT+GGG + Chr2:19517074-19517093 MsG0280007710.01.T01:CDS 35.0%
TCATCGATCAATAGTATCTC+TGG - Chr2:19517163-19517182 None:intergenic 35.0%
TCATTCTGTCATATTCCTCT+GGG - Chr2:19516715-19516734 None:intergenic 35.0%
TCCTCTTTATCACCAAAATC+TGG - Chr2:19516059-19516078 None:intergenic 35.0%
TCTAATTCTGCAGTAGACAA+AGG - Chr2:19516680-19516699 None:intergenic 35.0%
TGAGGAAAAAGACAAACACA+AGG + Chr2:19516498-19516517 MsG0280007710.01.T01:CDS 35.0%
TTAGATTATGAGGACACAGT+TGG + Chr2:19517073-19517092 MsG0280007710.01.T01:CDS 35.0%
TTCAATTCCTCTTCTTGGTA+AGG - Chr2:19517226-19517245 None:intergenic 35.0%
! ACATCCTTTTGCTTAAGAAC+AGG - Chr2:19515915-19515934 None:intergenic 35.0%
! GAGAAAGGTATATCAAATGG+TGG + Chr2:19516089-19516108 MsG0280007710.01.T01:CDS 35.0%
! GATTTTAAATGTTGGAGAGG+AGG + Chr2:19516355-19516374 MsG0280007710.01.T01:CDS 35.0%
! GGAGATTTTAAATGTTGGAG+AGG + Chr2:19516352-19516371 MsG0280007710.01.T01:CDS 35.0%
! TACTAGTGATGATGATCTCA+TGG + Chr2:19516937-19516956 MsG0280007710.01.T01:CDS 35.0%
! TGAGGATTTTCTCACCTTAA+AGG + Chr2:19516190-19516209 MsG0280007710.01.T01:CDS 35.0%
! TGCGAAGTATTATAACGAAG+AGG + Chr2:19516751-19516770 MsG0280007710.01.T01:CDS 35.0%
!! AATGTTTTTGAAGGATGTGG+TGG + Chr2:19516010-19516029 MsG0280007710.01.T01:CDS 35.0%
!! ACCAGATTTTGGTGATAAAG+AGG + Chr2:19516055-19516074 MsG0280007710.01.T01:CDS 35.0%
!! GAAGCCAGATTTTGAAAAAG+AGG + Chr2:19516817-19516836 MsG0280007710.01.T01:CDS 35.0%
!! GTCAATGTTTTTGAAGGATG+TGG + Chr2:19516007-19516026 MsG0280007710.01.T01:CDS 35.0%
!! TAGTTTTCAGGAAAATCCAG+GGG + Chr2:19516436-19516455 MsG0280007710.01.T01:CDS 35.0%
!! TTTTCTGAAAGCAGCAGAAA+AGG + Chr2:19516154-19516173 MsG0280007710.01.T01:CDS 35.0%
!!! GTAAGGAGCAAGTTTTTTCA+AGG - Chr2:19517209-19517228 None:intergenic 35.0%
!!! GTTAGTTTTCAGGAAAATCC+AGG + Chr2:19516434-19516453 MsG0280007710.01.T01:CDS 35.0%
AAAACCTAACAGATTTGGCC+TGG + Chr2:19517132-19517151 MsG0280007710.01.T01:CDS 40.0%
AATCAAGGAAAGCCAAGAGA+AGG + Chr2:19517527-19517546 MsG0280007710.01.T01:CDS 40.0%
AATGTGGGTAGACAAGAATG+CGG + Chr2:19516331-19516350 MsG0280007710.01.T01:CDS 40.0%
ACTTGGGCTTCCTAAAGATT+GGG + Chr2:19516847-19516866 MsG0280007710.01.T01:CDS 40.0%
AGATTATGAGGACACAGTTG+GGG + Chr2:19517075-19517094 MsG0280007710.01.T01:CDS 40.0%
AGGCAATACGACAAAAGGAA+AGG + Chr2:19516552-19516571 MsG0280007710.01.T01:CDS 40.0%
ATCAAACAGTTGTGTTGTGG+AGG + Chr2:19517477-19517496 MsG0280007710.01.T01:CDS 40.0%
ATCAAGGAAAGCCAAGAGAA+GGG + Chr2:19517528-19517547 MsG0280007710.01.T01:CDS 40.0%
ATGAATGTGGATCTGATGGT+GGG + Chr2:19516870-19516889 MsG0280007710.01.T01:CDS 40.0%
CACAACACAACTGTTTGATG+AGG - Chr2:19517476-19517495 None:intergenic 40.0%
CACCCTCACTACAAAAATCA+GGG - Chr2:19516784-19516803 None:intergenic 40.0%
CCACATTCATCCCAATCTTT+AGG - Chr2:19516860-19516879 None:intergenic 40.0%
CCTAAAGATTGGGATGAATG+TGG + Chr2:19516857-19516876 MsG0280007710.01.T01:CDS 40.0%
CTCATCAAACAGTTGTGTTG+TGG + Chr2:19517474-19517493 MsG0280007710.01.T01:CDS 40.0%
GAGTCGAGACTTAAAGCATA+TGG + Chr2:19517577-19517596 MsG0280007710.01.T01:CDS 40.0%
GAGTGAAGATGAGGAATTTG+AGG + Chr2:19516238-19516257 MsG0280007710.01.T01:CDS 40.0%
GATGCAAGAGATACAAGAGA+AGG + Chr2:19516607-19516626 MsG0280007710.01.T01:CDS 40.0%
GGAAGGAGAAACTGAAAAAG+AGG + Chr2:19516958-19516977 MsG0280007710.01.T01:CDS 40.0%
GGCAATACGACAAAAGGAAA+GGG + Chr2:19516553-19516572 MsG0280007710.01.T01:CDS 40.0%
GTAGGTTTGAGCATAACAAG+AGG + Chr2:19515712-19515731 MsG0280007710.01.T01:CDS 40.0%
TACTTGGGCTTCCTAAAGAT+TGG + Chr2:19516846-19516865 MsG0280007710.01.T01:CDS 40.0%
TCACCCTCACTACAAAAATC+AGG - Chr2:19516785-19516804 None:intergenic 40.0%
TGAGGAATTTGAGGAGAAAC+TGG + Chr2:19516247-19516266 MsG0280007710.01.T01:CDS 40.0%
TTCACCTGTCTTCTCCTTTA+AGG - Chr2:19516207-19516226 None:intergenic 40.0%
! AGTGATGATGATCTCATGGA+AGG + Chr2:19516941-19516960 MsG0280007710.01.T01:CDS 40.0%
! GAAGCGTAAAACTGCACTTT+TGG + Chr2:19517012-19517031 MsG0280007710.01.T01:CDS 40.0%
! GACCCTGATTTTTGTAGTGA+GGG + Chr2:19516779-19516798 MsG0280007710.01.T01:CDS 40.0%
! GCAAAGCATTTGATTGAGGA+GGG + Chr2:19516032-19516051 MsG0280007710.01.T01:CDS 40.0%
! TATGCTTTAAGTCTCGACTC+TGG - Chr2:19517577-19517596 None:intergenic 40.0%
! TGACCCTGATTTTTGTAGTG+AGG + Chr2:19516778-19516797 MsG0280007710.01.T01:CDS 40.0%
!! ATAGTATCTCTGGAGTATCC+AGG - Chr2:19517153-19517172 None:intergenic 40.0%
!! TATTGGTTCACCTTCACACT+CGG + Chr2:19515779-19515798 MsG0280007710.01.T01:CDS 40.0%
AAAGAGCAAAGAGGAGAGAG+AGG + Chr2:19516532-19516551 MsG0280007710.01.T01:CDS 45.0%
AAGCCAAGAGAAGGGAAAAC+AGG + Chr2:19517536-19517555 MsG0280007710.01.T01:CDS 45.0%
ACGACAAAAGGAAAGGGATG+AGG + Chr2:19516559-19516578 MsG0280007710.01.T01:CDS 45.0%
ACTTGCTCCTTACCAAGAAG+AGG + Chr2:19517216-19517235 MsG0280007710.01.T01:CDS 45.0%
AGAAAAGGAGTTTGACCCAG+AGG + Chr2:19516697-19516716 MsG0280007710.01.T01:CDS 45.0%
AGAGCAGAGAAAGAGCAAAG+AGG + Chr2:19516523-19516542 MsG0280007710.01.T01:CDS 45.0%
AGCCAAGAGAAGGGAAAACA+GGG + Chr2:19517537-19517556 MsG0280007710.01.T01:CDS 45.0%
ATCCTTCGTGCAGCAAGTTT+GGG + Chr2:19517292-19517311 MsG0280007710.01.T01:CDS 45.0%
ATTATGAGGACACAGTTGGG+GGG + Chr2:19517077-19517096 MsG0280007710.01.T01:CDS 45.0%
CAAGGTAGAGAGTGAAGATG+AGG + Chr2:19516229-19516248 MsG0280007710.01.T01:CDS 45.0%
CTCACCTTAAAGGAGAAGAC+AGG + Chr2:19516200-19516219 MsG0280007710.01.T01:CDS 45.0%
CTGAAAGCAGCAGAAAAGGA+TGG + Chr2:19516158-19516177 MsG0280007710.01.T01:CDS 45.0%
GACTTATGCTGATGAGCAAG+AGG + Chr2:19516118-19516137 MsG0280007710.01.T01:CDS 45.0%
GAGAGAGGCAATACGACAAA+AGG + Chr2:19516547-19516566 MsG0280007710.01.T01:CDS 45.0%
GATGAATGTGGATCTGATGG+TGG + Chr2:19516869-19516888 MsG0280007710.01.T01:CDS 45.0%
GATTATGAGGACACAGTTGG+GGG + Chr2:19517076-19517095 MsG0280007710.01.T01:CDS 45.0%
GTATCCAGGCCAAATCTGTT+AGG - Chr2:19517139-19517158 None:intergenic 45.0%
TAGACGAGGAATATGCTCGT+AGG + Chr2:19515694-19515713 MsG0280007710.01.T01:CDS 45.0%
TAGTGAGGGTGAAGAAGACA+TGG + Chr2:19516793-19516812 MsG0280007710.01.T01:CDS 45.0%
TCATCATCTTCCGAGTGTGA+AGG - Chr2:19515792-19515811 None:intergenic 45.0%
TGAAAAAGAGGACATTCCCG+AGG + Chr2:19516970-19516989 MsG0280007710.01.T01:CDS 45.0%
TGAGATGGAAATTGAGAGGC+AGG + Chr2:19516400-19516419 MsG0280007710.01.T01:CDS 45.0%
TGAGCAAGAGGAGTTGAAAC+AGG + Chr2:19516130-19516149 MsG0280007710.01.T01:CDS 45.0%
TGGGATGAATGTGGATCTGA+TGG + Chr2:19516866-19516885 MsG0280007710.01.T01:CDS 45.0%
! ATTGAGGAGGGACCAGATTT+TGG + Chr2:19516044-19516063 MsG0280007710.01.T01:CDS 45.0%
! GGCAAAGCATTTGATTGAGG+AGG + Chr2:19516031-19516050 MsG0280007710.01.T01:CDS 45.0%
! GGTGGCAAAGCATTTGATTG+AGG + Chr2:19516028-19516047 MsG0280007710.01.T01:CDS 45.0%
!!! TGGATCTGATGGTGGGTTTT+TGG + Chr2:19516877-19516896 MsG0280007710.01.T01:CDS 45.0%
AAAGAGGACATTCCCGAGGA+AGG + Chr2:19516974-19516993 MsG0280007710.01.T01:CDS 50.0%
AAATCCAGGGGATAGAGTGC+TGG + Chr2:19516448-19516467 MsG0280007710.01.T01:CDS 50.0%
AGCAGCAGAAAAGGATGGCT+TGG + Chr2:19516163-19516182 MsG0280007710.01.T01:CDS 50.0%
AGGAAGGTAGTAGTCGGAAG+AGG + Chr2:19516990-19517009 MsG0280007710.01.T01:CDS 50.0%
CATGCTGAAGATGAGGGCTA+AGG + Chr2:19517267-19517286 MsG0280007710.01.T01:CDS 50.0%
CTTCCGACTACTACCTTCCT+CGG - Chr2:19516990-19517009 None:intergenic 50.0%
GACGTGCTAGAATCAGCCTT+GGG - Chr2:19517451-19517470 None:intergenic 50.0%
GATCCTTCGTGCAGCAAGTT+TGG + Chr2:19517291-19517310 MsG0280007710.01.T01:CDS 50.0%
GCAGCAGAAAAGGATGGCTT+GGG + Chr2:19516164-19516183 MsG0280007710.01.T01:CDS 50.0%
GGAGAAGACAGGTGAAGACA+AGG + Chr2:19516211-19516230 MsG0280007710.01.T01:CDS 50.0%
TGACGTGCTAGAATCAGCCT+TGG - Chr2:19517452-19517471 None:intergenic 50.0%
TGAGCATAACAAGAGGCGAG+AGG + Chr2:19515719-19515738 MsG0280007710.01.T01:CDS 50.0%
TTATGAGGACACAGTTGGGG+GGG + Chr2:19517078-19517097 MsG0280007710.01.T01:CDS 50.0%
TTCCCGAGGAAGGTAGTAGT+CGG + Chr2:19516984-19517003 MsG0280007710.01.T01:CDS 50.0%
TTCCGACTACTACCTTCCTC+GGG - Chr2:19516989-19517008 None:intergenic 50.0%
! AAAGGATGGCTTGGGAGATG+AGG + Chr2:19516172-19516191 MsG0280007710.01.T01:CDS 50.0%
! AATCCAGGGGATAGAGTGCT+GGG + Chr2:19516449-19516468 MsG0280007710.01.T01:CDS 50.0%
! AGCCCTGTTTTCCCTTCTCT+TGG - Chr2:19517542-19517561 None:intergenic 50.0%
!! TACCCAAACTTGCTGCACGA+AGG - Chr2:19517297-19517316 None:intergenic 50.0%
GGTCATGCTCGTAAGGTGGA+GGG + Chr2:19516470-19516489 MsG0280007710.01.T01:CDS 55.0%
TGCTCGTAAGGTGGAGGGTT+CGG + Chr2:19516475-19516494 MsG0280007710.01.T01:CDS 55.0%
! AGTGCTGGGTCATGCTCGTA+AGG + Chr2:19516463-19516482 MsG0280007710.01.T01:CDS 55.0%
GCTGGGTCATGCTCGTAAGG+TGG + Chr2:19516466-19516485 MsG0280007710.01.T01:CDS 60.0%
GGGTCATGCTCGTAAGGTGG+AGG + Chr2:19516469-19516488 MsG0280007710.01.T01:CDS 60.0%
TGACCCAGCACTCTATCCCC+TGG - Chr2:19516455-19516474 None:intergenic 60.0%
!! GTAAGGTGGAGGGTTCGGTG+AGG + Chr2:19516480-19516499 MsG0280007710.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 19515633 19517612 19515633 ID=MsG0280007710.01;Name=MsG0280007710.01
Chr2 mRNA 19515633 19517612 19515633 ID=MsG0280007710.01.T01;Parent=MsG0280007710.01;Name=MsG0280007710.01.T01;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|659
Chr2 exon 19515633 19517612 19515633 ID=MsG0280007710.01.T01:exon:10176;Parent=MsG0280007710.01.T01
Chr2 CDS 19515633 19517612 19515633 ID=MsG0280007710.01.T01:cds;Parent=MsG0280007710.01.T01
Gene Sequence

>MsG0280007710.01.T01

ATGACTCAGAACATTTTTGATGGCAGTGATTCAGAAAATGAAGATATCTCAAATATCAAGATAGACGAGGAATATGCTCGTAGGTTTGAGCATAACAAGAGGCGAGAGGATCTCCAACGTTATGAAGAATTGAAAAAGAAAGGGGTTATTGGTTCACCTTCACACTCGGAAGATGATGAATCTGAGTCTGAATCTTCTGATGATGACGATGTGAACAATTTCAACTCTAAGAGTGATAAGGAATTCTTTGATGCTTTGATTAAGGTGAAGAAGAAAGATCCTGTTCTTAAGCAAAAGGATGTTAAGCTTTTTGAATCAGATCATAGCAGTGAAGATGAAAGTGATGATGAGAAGAGTAAAGATAAGGAGAAAAAGTCAATGTTTTTGAAGGATGTGGTGGCAAAGCATTTGATTGAGGAGGGACCAGATTTTGGTGATAAAGAGGATGAAACAAATGAGAAAGGTATATCAAATGGTGGTAAGAAGACTTATGCTGATGAGCAAGAGGAGTTGAAACAGGCTTTTCTGAAAGCAGCAGAAAAGGATGGCTTGGGAGATGAGGATTTTCTCACCTTAAAGGAGAAGACAGGTGAAGACAAGGTAGAGAGTGAAGATGAGGAATTTGAGGAGAAACTGGATGCATATTTTGATGATTCAAACGAAAATTCTTTATTTCTAAAAAACTATTTCAAGAACAAAATGTGGGTAGACAAGAATGCGGAGATTTTAAATGTTGGAGAGGAGGATTTGCAAGAGATTTCAGAAGATGAGATGGAAATTGAGAGGCAGGAAGAGTATGAAGTTAGTTTTCAGGAAAATCCAGGGGATAGAGTGCTGGGTCATGCTCGTAAGGTGGAGGGTTCGGTGAGGAAAAAGACAAACACAAGGAAAGAGCAGAGAAAGAGCAAAGAGGAGAGAGAGGCAATACGACAAAAGGAAAGGGATGAGGAGTTGAAACATTTAAAGAATGTGAAGATGCAAGAGATACAAGAGAAGGTTAAAAAGATAAAGAAGATTGCAGGGATCAACGATGATGATATTATCCCTTTGTCTACTGCAGAATTAGAAAAGGAGTTTGACCCAGAGGAATATGACAGAATGATGAAGAAAGCATTTGATGCGAAGTATTATAACGAAGAGGATGTTGACCCTGATTTTTGTAGTGAGGGTGAAGAAGACATGGAGAAGCCAGATTTTGAAAAAGAGGATGATTTACTTGGGCTTCCTAAAGATTGGGATGAATGTGGATCTGATGGTGGGTTTTTGGCTGCAAGAGAAAAAGCATTGAAAGCAAAGATTGAAAATACTAGTGATGATGATCTCATGGAAGGAGAAACTGAAAAAGAGGACATTCCCGAGGAAGGTAGTAGTCGGAAGAGGAAGCGTAAAACTGCACTTTTGGAGAAAGCAAGACAAATGATGATGGATGAGTTTTATAAATTAGATTATGAGGACACAGTTGGGGGGGATCTGAAGACAAGATTCAAGTATACCAAAACAAAACCTAACAGATTTGGCCTGGATACTCCAGAGATACTATTGATCGATGATAAGGAACTGAATCAACATATTTCCTTGAAAAAACTTGCTCCTTACCAAGAAGAGGAATTGAAGCTTAGCAAAAAAAAAAGATACATGCTGAAGATGAGGGCTAAGGAGATCCTTCGTGCAGCAAGTTTGGGTAAGAAGAAAAAGAGGTTAAAGGTTGATTCTAGCAAATCAACTCAAGTTGATTCTAGCAAGTTAACTTCAAACAATGTTGTGGAGGAAGAAAAAGCAAACACAGCAAGTTTGGATAAGAAGATAAATAAGAAGCCCAAGGCTGATTCTAGCACGTCAACCTCATCAAACAGTTGTGTTGTGGAGGATGAAAAATCTAACACAGAAGAATCAAAATCAAGGAAAGCCAAGAGAAGGGAAAACAGGGCTAAATTAAAGTTGCCAGAGTCGAGACTTAAAGCATATGGCAAGACAACCTGA

Protein sequence

>MsG0280007710.01.T01

MTQNIFDGSDSENEDISNIKIDEEYARRFEHNKRREDLQRYEELKKKGVIGSPSHSEDDESESESSDDDDVNNFNSKSDKEFFDALIKVKKKDPVLKQKDVKLFESDHSSEDESDDEKSKDKEKKSMFLKDVVAKHLIEEGPDFGDKEDETNEKGISNGGKKTYADEQEELKQAFLKAAEKDGLGDEDFLTLKEKTGEDKVESEDEEFEEKLDAYFDDSNENSLFLKNYFKNKMWVDKNAEILNVGEEDLQEISEDEMEIERQEEYEVSFQENPGDRVLGHARKVEGSVRKKTNTRKEQRKSKEEREAIRQKERDEELKHLKNVKMQEIQEKVKKIKKIAGINDDDIIPLSTAELEKEFDPEEYDRMMKKAFDAKYYNEEDVDPDFCSEGEEDMEKPDFEKEDDLLGLPKDWDECGSDGGFLAAREKALKAKIENTSDDDLMEGETEKEDIPEEGSSRKRKRKTALLEKARQMMMDEFYKLDYEDTVGGDLKTRFKYTKTKPNRFGLDTPEILLIDDKELNQHISLKKLAPYQEEELKLSKKKRYMLKMRAKEILRAASLGKKKKRLKVDSSKSTQVDSSKLTSNNVVEEEKANTASLDKKINKKPKADSSTSTSSNSCVVEDEKSNTEESKSRKAKRRENRAKLKLPESRLKAYGKTT*