AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029258.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029258.01.T01 MTR_5g083370 68.372 430 24 6 1 318 2 431 0.0 536
MsG0580029258.01.T01 MTR_5g073280 60.440 273 58 2 94 318 210 480 3.70e-97 298
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029258.01.T01 AT5G58440 59.929 282 64 2 86 318 219 500 1.62e-105 320
MsG0580029258.01.T01 AT5G07120 59.431 281 65 2 86 318 208 487 1.01e-102 312
MsG0580029258.01.T01 AT5G07120 59.431 281 65 2 86 318 208 487 1.26e-102 312
MsG0580029258.01.T01 AT5G07120 59.431 281 65 2 86 318 208 487 1.26e-102 312

Find 125 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGAAGATAAGGAGTTTA+TGG 0.131203 5:+94386017 MsG0580029258.01.T01:CDS
GGCTGCCACGGCAGCTGTTT+GGG 0.165894 5:+94385863 MsG0580029258.01.T01:CDS
GAGAAGTATCTGAGGAAATT+AGG 0.188004 5:+94385724 MsG0580029258.01.T01:CDS
TGGTGTAAGGAGGAGGTTTC+GGG 0.198056 5:+94385132 MsG0580029258.01.T01:intron
GTTGCTTCATCCAGAATATT+TGG 0.216818 5:+94387384 MsG0580029258.01.T01:CDS
AATGAATTGAACGGTGATTT+AGG 0.226921 5:-94384877 None:intergenic
AGGCTGCCACGGCAGCTGTT+TGG 0.229002 5:+94385862 MsG0580029258.01.T01:CDS
AACAATTACAAGACATTTCC+AGG 0.296839 5:-94389893 None:intergenic
AGCTGTTTGGGGCGGAGAGT+GGG 0.297842 5:+94385875 MsG0580029258.01.T01:CDS
TAGTTATTAGCCGTATTAAT+TGG 0.315247 5:+94389982 MsG0580029258.01.T01:three_prime_UTR
CTTGTCTCCACCAAATATTC+TGG 0.315427 5:-94387394 None:intergenic
CAGCTGTTTGGGGCGGAGAG+TGG 0.335447 5:+94385874 MsG0580029258.01.T01:CDS
CGATGGCTGTTGAACGTTGC+CGG 0.338413 5:-94384848 None:intergenic
AACAATCTGTTAGTAATGAT+TGG 0.339972 5:+94385971 MsG0580029258.01.T01:CDS
TACATTGTCGGAGCGGTTAT+CGG 0.341514 5:+94385161 MsG0580029258.01.T01:CDS
AAATCTAGAGTATCATAAAA+AGG 0.343696 5:-94389728 None:intergenic
TTGGTGTAAGGAGGAGGTTT+CGG 0.349103 5:+94385131 MsG0580029258.01.T01:intron
ATGACTCCATTTCATCATCT+TGG 0.349433 5:-94384783 None:intergenic
AGAAGTATCTGAGGAAATTA+GGG 0.377649 5:+94385725 MsG0580029258.01.T01:CDS
AAACTATCTACAAAGATTAC+AGG 0.380213 5:-94389918 None:intergenic
AAACTTTGCAGGAAAATAAT+AGG 0.382071 5:+94389418 MsG0580029258.01.T01:intron
TTATCGTGGTTATGTGATTC+CGG 0.384264 5:+94385188 MsG0580029258.01.T01:CDS
ACAATCTGTTAGTAATGATT+GGG 0.384603 5:+94385972 MsG0580029258.01.T01:CDS
AATAGGATTAGCATCAAATC+TGG 0.387820 5:-94390071 None:intergenic
AACTAGCTTCTTTACATTCA+CGG 0.389779 5:+94387346 MsG0580029258.01.T01:CDS
AACGTTGCCGGAGGAGTTAT+CGG 0.389957 5:-94384836 None:intergenic
TTAGGGTTGCATCCTGTGAT+TGG 0.408182 5:+94385742 MsG0580029258.01.T01:CDS
GCGAGGGTTTGTTGTCAATC+AGG 0.412246 5:+94389494 MsG0580029258.01.T01:three_prime_UTR
TGAAATTCCTCCAATTAATA+CGG 0.412620 5:-94389992 None:intergenic
TAAGGAGGAGGTTTCGGGAG+TGG 0.412788 5:+94385137 MsG0580029258.01.T01:intron
TTCGGGAGTGGTTACATTGT+CGG 0.416490 5:+94385149 MsG0580029258.01.T01:CDS
TGACTCCATTTCATCATCTT+GGG 0.419661 5:-94384782 None:intergenic
GGAGAAGAAGGATAAGTTGA+TGG 0.424046 5:+94386038 MsG0580029258.01.T01:CDS
TAAGGAGTTTATGGAGAAGA+AGG 0.434834 5:+94386026 MsG0580029258.01.T01:CDS
GGAGTTATCGGCGCCGTTGT+CGG 0.439875 5:-94384824 None:intergenic
CGCTTCCCAAGATGATGAAA+TGG 0.441700 5:+94384777 MsG0580029258.01.T01:CDS
GATGCAGAAGGAGGAGTTTG+TGG 0.457480 5:+94385681 MsG0580029258.01.T01:CDS
GGTGAAACAATGGGTGAGCT+AGG 0.463965 5:+94386929 MsG0580029258.01.T01:CDS
TGGCGTCAAGGATGCTTGAT+GGG 0.464255 5:+94385833 MsG0580029258.01.T01:CDS
AAAGTGGAAGGGATTTGCTT+AGG 0.466015 5:+94385932 MsG0580029258.01.T01:CDS
AAGCGCGAAGAACGTGATCT+TGG 0.468626 5:-94384759 None:intergenic
GTGGCGTCAAGGATGCTTGA+TGG 0.468981 5:+94385832 MsG0580029258.01.T01:CDS
TAGGGTTGCATCCTGTGATT+GGG 0.469279 5:+94385743 MsG0580029258.01.T01:CDS
ATTGGTTGTTGAAGAAGATA+AGG 0.471684 5:+94386008 MsG0580029258.01.T01:CDS
AAAGGAGTGGCTTGCTGTGA+TGG 0.479855 5:-94389941 None:intergenic
GTCAGCAAAAGCATTGTTGA+TGG 0.489842 5:-94387283 None:intergenic
GCTGCCACGGCAGCTGTTTG+GGG 0.491006 5:+94385864 MsG0580029258.01.T01:CDS
ACTTAGCAATGTTTCTCAGC+AGG 0.492076 5:+94386074 MsG0580029258.01.T01:CDS
GCTGTTTGGGGCGGAGAGTG+GGG 0.492352 5:+94385876 MsG0580029258.01.T01:CDS
TTATCTTCTTCAACAACCAA+TGG 0.498912 5:-94386006 None:intergenic
GACAGCAGCTAGAATGTACT+TGG 0.506870 5:+94389686 MsG0580029258.01.T01:three_prime_UTR
TTTGAATGATGTGGCTCAGC+CGG 0.506966 5:+94385906 MsG0580029258.01.T01:CDS
GGAGCAGAGGAGATTAGCGT+TGG 0.508817 5:+94385702 MsG0580029258.01.T01:CDS
GCAAGACATGGGTGAAACAA+TGG 0.520277 5:+94386919 MsG0580029258.01.T01:CDS
CAAGACATGGGTGAAACAAT+GGG 0.522777 5:+94386920 MsG0580029258.01.T01:CDS
TCCTCACTCTTCCCAATCAC+AGG 0.526809 5:-94385754 None:intergenic
TTGAAAGAATTGACAAGGAA+AGG 0.529294 5:+94389448 MsG0580029258.01.T01:three_prime_UTR
GATAAACTCCACGAATACCT+TGG 0.530791 5:+94387249 MsG0580029258.01.T01:CDS
ATAAACTCCACGAATACCTT+GGG 0.530869 5:+94387250 MsG0580029258.01.T01:CDS
GTGGCTCAGCCGGCGAAAAG+TGG 0.533089 5:+94385916 MsG0580029258.01.T01:CDS
CTCAGCCGGCGAAAAGTGGA+AGG 0.538183 5:+94385920 MsG0580029258.01.T01:CDS
TTATTAGCCGTATTAATTGG+AGG 0.538590 5:+94389985 MsG0580029258.01.T01:three_prime_UTR
ATGGGGCGGTGAGGCTGCCA+CGG 0.539166 5:+94385851 MsG0580029258.01.T01:CDS
TTATGTGATTCCGGTGAGGC+CGG 0.539681 5:+94385197 MsG0580029258.01.T01:CDS
CAGAGAGATGGCTGCTGTGT+GGG 0.539955 5:+94389628 MsG0580029258.01.T01:three_prime_UTR
AAGATTGCTTCAGCGTAAGA+AGG 0.540494 5:-94384910 None:intergenic
GGTTGTTGATTTGAATGATG+TGG 0.541262 5:+94385897 MsG0580029258.01.T01:CDS
TAGAGAGTATGAACGAATCA+AGG 0.545450 5:+94387486 MsG0580029258.01.T01:three_prime_UTR
TGTCAAGTTTCAGCAAGACA+TGG 0.545641 5:+94386907 MsG0580029258.01.T01:CDS
GTTGATGAGGACGACGGATG+TGG 0.546141 5:+94385813 MsG0580029258.01.T01:CDS
TCCGCCCCAAACAGCTGCCG+TGG 0.549263 5:-94385868 None:intergenic
CGCCGTTGTCGGCGTCGTCG+TGG 0.552418 5:-94384813 None:intergenic
AGGAGGAGTTTGTGGAGCAG+AGG 0.558001 5:+94385689 MsG0580029258.01.T01:CDS
GCATTGTCCCAAGGTATTCG+TGG 0.559449 5:-94387257 None:intergenic
GTCAAGGATGCTTGATGGGG+CGG 0.562029 5:+94385837 MsG0580029258.01.T01:CDS
ACTATGAAAAGCCGCCTCAT+CGG 0.563542 5:-94390035 None:intergenic
GCCACGGCAGCTGTTTGGGG+CGG 0.564908 5:+94385867 MsG0580029258.01.T01:CDS
CTGTCAACAATGCACTTGAT+CGG 0.565466 5:-94387305 None:intergenic
CAATATATCATGTACAACTC+TGG 0.565921 5:-94389822 None:intergenic
AACGGCGCCGATAACTCCTC+CGG 0.568830 5:+94384829 MsG0580029258.01.T01:CDS
AGCACTCTCAGTTACTCTAA+CGG 0.577710 5:-94387449 None:intergenic
GCTTCATCCAGAATATTTGG+TGG 0.579181 5:+94387387 MsG0580029258.01.T01:CDS
AAGGGAAGTTGCCGTTGATG+AGG 0.580166 5:+94385800 MsG0580029258.01.T01:CDS
GTCAAGTTTCAGCAAGACAT+GGG 0.591750 5:+94386908 MsG0580029258.01.T01:CDS
AACAATGGGTGAGCTAGGGT+TGG 0.592568 5:+94386934 MsG0580029258.01.T01:CDS
ATTGTCGGAGCGGTTATCGG+AGG 0.593370 5:+94385164 MsG0580029258.01.T01:CDS
TTGGGGAGGTGCTAAGCCAT+TGG 0.595216 5:+94385990 MsG0580029258.01.T01:CDS
TGCTGTGTGGGAAAAGCTTG+CGG 0.596149 5:+94389640 MsG0580029258.01.T01:three_prime_UTR
ACTTTCAAAACATGCTGCGA+GGG 0.598205 5:+94389478 MsG0580029258.01.T01:three_prime_UTR
TTCACTTCATTCGACACCAA+CGG 0.599087 5:+94384931 MsG0580029258.01.T01:CDS
GGATGCTTGATGGGGCGGTG+AGG 0.604410 5:+94385842 MsG0580029258.01.T01:CDS
AGGCAGGCTATGCAGAGAGA+TGG 0.606118 5:+94389616 MsG0580029258.01.T01:intron
CTCCACGACGACGCCGACAA+CGG 0.609403 5:+94384811 MsG0580029258.01.T01:CDS
TGGTGGAGACAAGTCTATTG+CGG 0.610004 5:+94387404 MsG0580029258.01.T01:CDS
GGCGTCAAGGATGCTTGATG+GGG 0.610367 5:+94385834 MsG0580029258.01.T01:CDS
ACATCCGTCGTCCTCATCAA+CGG 0.610443 5:-94385811 None:intergenic
CGGTTATCGGAGGTTTATCG+TGG 0.619246 5:+94385174 MsG0580029258.01.T01:CDS
GGACGACGGATGTGGCGTCA+AGG 0.620316 5:+94385821 MsG0580029258.01.T01:CDS
GTGAAACAATGGGTGAGCTA+GGG 0.620469 5:+94386930 MsG0580029258.01.T01:CDS
GACTTTCAAAACATGCTGCG+AGG 0.622052 5:+94389477 MsG0580029258.01.T01:three_prime_UTR
TGGCTGTTGAACGTTGCCGG+AGG 0.627386 5:-94384845 None:intergenic
CTATCAGGTGATGCAGAAGG+AGG 0.634617 5:+94385672 MsG0580029258.01.T01:intron
ATTCTATCAGGTGATGCAGA+AGG 0.635217 5:+94385669 MsG0580029258.01.T01:intron
TGTCTTGCTGAAACTTGACA+AGG 0.636299 5:-94386904 None:intergenic
TTTGATGTAATAAACCGATG+AGG 0.640009 5:+94390021 MsG0580029258.01.T01:three_prime_UTR
GTCTTGCTGAAACTTGACAA+GGG 0.646463 5:-94386903 None:intergenic
CAATCTGTTAGTAATGATTG+GGG 0.646740 5:+94385973 MsG0580029258.01.T01:CDS
AATACGGCTAATAACTAACA+TGG 0.647528 5:-94389976 None:intergenic
AATTATCAAAGATCTCAACC+TGG 0.649241 5:+94389875 MsG0580029258.01.T01:three_prime_UTR
GGATCGAGGAATGAATTGAA+CGG 0.649991 5:-94384886 None:intergenic
TCAGCCGGCGAAAAGTGGAA+GGG 0.652000 5:+94385921 MsG0580029258.01.T01:CDS
ATTGCTTCAGCGTAAGAAGG+AGG 0.654082 5:-94384907 None:intergenic
TGATGGCTAGCATTGTCCCA+AGG 0.654220 5:-94387266 None:intergenic
TGAGCTTGAAAGAATTGACA+AGG 0.655714 5:+94389443 MsG0580029258.01.T01:three_prime_UTR
GATGTAATAAACCGATGAGG+CGG 0.659641 5:+94390024 MsG0580029258.01.T01:three_prime_UTR
GCAGAGAGATGGCTGCTGTG+TGG 0.661557 5:+94389627 MsG0580029258.01.T01:three_prime_UTR
CAGCGTAAGAAGGAGGATCG+AGG 0.672129 5:-94384900 None:intergenic
TAGCGTTGGAGAAGTATCTG+AGG 0.672262 5:+94385716 MsG0580029258.01.T01:CDS
GGTGATTTAGGACTTTGCGA+TGG 0.689579 5:-94384865 None:intergenic
GAGTGGTTACATTGTCGGAG+CGG 0.698989 5:+94385154 MsG0580029258.01.T01:CDS
TCTGTTAGTAATGATTGGGG+AGG 0.700339 5:+94385976 MsG0580029258.01.T01:CDS
TCCTGTGATTGGGAAGAGTG+AGG 0.720504 5:+94385753 MsG0580029258.01.T01:CDS
GTGGTTATGTGATTCCGGTG+AGG 0.721489 5:+94385193 MsG0580029258.01.T01:CDS
ACGGCTAATAACTAACATGG+AGG 0.732965 5:-94389973 None:intergenic
GTTGCCGTTGATGAGGACGA+CGG 0.733554 5:+94385807 MsG0580029258.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTACATATTATTTCAAAA+AGG - Chr5:94389378-94389397 None:intergenic 10.0%
!!! AAAAAGAAAAAATAGTTTTA+AGG + Chr5:94389335-94389354 MsG0580029258.01.T01:intron 10.0%
!!! TAAAAATACATTTTTGTATT+CGG + Chr5:94387514-94387533 MsG0580029258.01.T01:intron 10.0%
!! AAATTGTTAATTACAATAAG+TGG - Chr5:94385589-94385608 None:intergenic 15.0%
!! TTTCATCATACAAATATAAT+TGG - Chr5:94387153-94387172 None:intergenic 15.0%
!!! ATAAAAATACTTTTAGCATT+CGG + Chr5:94389780-94389799 MsG0580029258.01.T01:three_prime_UTR 15.0%
!!! ATAGAAATACAGATTTTAAA+TGG - Chr5:94389311-94389330 None:intergenic 15.0%
!!! TTCTTTGATAATCTAATTAA+TGG - Chr5:94387867-94387886 None:intergenic 15.0%
!! AATAATATCAAGTGTAAATG+TGG + Chr5:94389395-94389414 MsG0580029258.01.T01:intron 20.0%
!! CAAAATATTGATATTAAGCA+CGG - Chr5:94385646-94385665 None:intergenic 20.0%
!! CTCAAAAATTAAATCACTAA+AGG - Chr5:94389123-94389142 None:intergenic 20.0%
!! GACAATAATCTTCATAATAA+TGG - Chr5:94387689-94387708 None:intergenic 20.0%
!! TATAGACACATGAATATATA+TGG - Chr5:94387662-94387681 None:intergenic 20.0%
!! TTACTAAACATGATAATAGT+CGG + Chr5:94386680-94386699 MsG0580029258.01.T01:intron 20.0%
!! TTATCAAAATCATCAAATAG+TGG + Chr5:94388294-94388313 MsG0580029258.01.T01:intron 20.0%
!! TTTACAAATGCATCAAAATA+TGG - Chr5:94388035-94388054 None:intergenic 20.0%
!!! AAACATTGGATTTTACATAT+AGG - Chr5:94388156-94388175 None:intergenic 20.0%
!!! AAATCTAGAGTATCATAAAA+AGG - Chr5:94389731-94389750 None:intergenic 20.0%
!!! AATATTTTGCATATTCTATC+AGG + Chr5:94385657-94385676 MsG0580029258.01.T01:intron 20.0%
!!! ATTTTTATACTACATAAGCT+TGG - Chr5:94389768-94389787 None:intergenic 20.0%
!!! GTAGAATCAATTATCAATTT+TGG + Chr5:94385472-94385491 MsG0580029258.01.T01:intron 20.0%
!!! TAGTTAAATTAGTTTCTAGT+TGG + Chr5:94385541-94385560 MsG0580029258.01.T01:intron 20.0%
!!! TTTTATACTTGTTATGTACT+TGG - Chr5:94388491-94388510 None:intergenic 20.0%
! AAACTATCTACAAAGATTAC+AGG - Chr5:94389921-94389940 None:intergenic 25.0%
! AAACTTTGCAGGAAAATAAT+AGG + Chr5:94389418-94389437 MsG0580029258.01.T01:intron 25.0%
! AAAGATTCATAACCACAATA+TGG + Chr5:94386302-94386321 MsG0580029258.01.T01:intron 25.0%
! AAATCATAAGATAGGTTCAA+AGG - Chr5:94389199-94389218 None:intergenic 25.0%
! AACAATCTGTTAGTAATGAT+TGG + Chr5:94385971-94385990 MsG0580029258.01.T01:CDS 25.0%
! AAGATTCATAACCACAATAT+GGG + Chr5:94386303-94386322 MsG0580029258.01.T01:intron 25.0%
! AATTCGAATCACAAAAAGTA+AGG + Chr5:94386995-94387014 MsG0580029258.01.T01:intron 25.0%
! ACAATCTGTTAGTAATGATT+GGG + Chr5:94385972-94385991 MsG0580029258.01.T01:CDS 25.0%
! ACTCAATGATCAATAAAACA+TGG - Chr5:94388382-94388401 None:intergenic 25.0%
! AGTAAAATGTAGATTCATTG+TGG + Chr5:94386167-94386186 MsG0580029258.01.T01:intron 25.0%
! ATGTGATGTTAGTTAAAAGT+AGG + Chr5:94386347-94386366 MsG0580029258.01.T01:intron 25.0%
! ATGTTTAGTTGCAAATTAGT+CGG + Chr5:94385260-94385279 MsG0580029258.01.T01:intron 25.0%
! ATTCGAATCACAAAAAGTAA+GGG + Chr5:94386996-94387015 MsG0580029258.01.T01:intron 25.0%
! CCTTTATAGATGGATAAAAA+GGG - Chr5:94388912-94388931 None:intergenic 25.0%
! CTTTATAGATGGATAAAAAG+GGG - Chr5:94388911-94388930 None:intergenic 25.0%
! GCTTTCATAAATCATAAGAT+AGG - Chr5:94389207-94389226 None:intergenic 25.0%
! TACATAACAAGTATAAAACG+AGG + Chr5:94388493-94388512 MsG0580029258.01.T01:intron 25.0%
! TAGATATGCCTAAAATGATT+AGG + Chr5:94388848-94388867 MsG0580029258.01.T01:intron 25.0%
! TAGTTATTAGCCGTATTAAT+TGG + Chr5:94389982-94390001 MsG0580029258.01.T01:three_prime_UTR 25.0%
! TGAAATTCCTCCAATTAATA+CGG - Chr5:94389995-94390014 None:intergenic 25.0%
! TGATGCATTTAATTCAAAGT+AGG + Chr5:94386258-94386277 MsG0580029258.01.T01:intron 25.0%
! TTAATTACAATAAGTGGTGT+GGG - Chr5:94385583-94385602 None:intergenic 25.0%
!! ATCATTTAAAACCTTGTTTG+TGG + Chr5:94386596-94386615 MsG0580029258.01.T01:intron 25.0%
!! ATTTTACTTCTTTGATTGCT+AGG + Chr5:94386835-94386854 MsG0580029258.01.T01:intron 25.0%
!! CTCTAGATTTTTATCTCATT+AGG + Chr5:94389741-94389760 MsG0580029258.01.T01:three_prime_UTR 25.0%
!! TTTTACTTCTTTGATTGCTA+GGG + Chr5:94386836-94386855 MsG0580029258.01.T01:intron 25.0%
!!! ACAAGGTTTTAAATGATCAT+TGG - Chr5:94386593-94386612 None:intergenic 25.0%
!!! ACATTCTGGTTTTTAAACAT+TGG - Chr5:94388170-94388189 None:intergenic 25.0%
!!! TTTTAACTAACATCACATTG+CGG - Chr5:94386345-94386364 None:intergenic 25.0%
AACAATTACAAGACATTTCC+AGG - Chr5:94389896-94389915 None:intergenic 30.0%
AACTAATCCAAGTGTATGTT+TGG - Chr5:94385515-94385534 None:intergenic 30.0%
AAGAAAAGAGAAGATAAACG+AGG - Chr5:94389524-94389543 None:intergenic 30.0%
AATACGGCTAATAACTAACA+TGG - Chr5:94389979-94389998 None:intergenic 30.0%
AATGAATTGAACGGTGATTT+AGG - Chr5:94384880-94384899 None:intergenic 30.0%
AATTATCAAAGATCTCAACC+TGG + Chr5:94389875-94389894 MsG0580029258.01.T01:three_prime_UTR 30.0%
ACAATTCACTAATCCAATCA+GGG + Chr5:94388419-94388438 MsG0580029258.01.T01:intron 30.0%
ACATGGAGGAGAAAAAAAAA+AGG - Chr5:94389962-94389981 None:intergenic 30.0%
AGAAAAGAGAAGATAAACGA+GGG - Chr5:94389523-94389542 None:intergenic 30.0%
AGACAGCTAAAGATTATACT+TGG - Chr5:94387191-94387210 None:intergenic 30.0%
ATAAAACACAGACATAACCA+TGG + Chr5:94388996-94389015 MsG0580029258.01.T01:intron 30.0%
ATCCAAGGTATAACTTAACA+TGG + Chr5:94388603-94388622 MsG0580029258.01.T01:intron 30.0%
ATCCATGTTAAGTTATACCT+TGG - Chr5:94388608-94388627 None:intergenic 30.0%
ATGTTGATATGTATGCTGAA+GGG - Chr5:94387601-94387620 None:intergenic 30.0%
ATTAAATCACTAAAGGCCAA+AGG - Chr5:94389116-94389135 None:intergenic 30.0%
ATTGGTTGTTGAAGAAGATA+AGG + Chr5:94386008-94386027 MsG0580029258.01.T01:CDS 30.0%
CAATATATCATGTACAACTC+TGG - Chr5:94389825-94389844 None:intergenic 30.0%
CAATCTGTTAGTAATGATTG+GGG + Chr5:94385973-94385992 MsG0580029258.01.T01:CDS 30.0%
GCCTTTATAGATGGATAAAA+AGG - Chr5:94388913-94388932 None:intergenic 30.0%
GTCTTTATAGACAAGTTTCA+TGG + Chr5:94387977-94387996 MsG0580029258.01.T01:intron 30.0%
GTGTGTCAATTATCAAATAG+TGG - Chr5:94387769-94387788 None:intergenic 30.0%
GTTAATTACAATAAGTGGTG+TGG - Chr5:94385584-94385603 None:intergenic 30.0%
TACAATTCACTAATCCAATC+AGG + Chr5:94388418-94388437 MsG0580029258.01.T01:intron 30.0%
TACCAGTCAAATTTATACCA+GGG - Chr5:94387908-94387927 None:intergenic 30.0%
TATGTTGATATGTATGCTGA+AGG - Chr5:94387602-94387621 None:intergenic 30.0%
TCATCAATCAATAGCTGATT+TGG + Chr5:94388093-94388112 MsG0580029258.01.T01:intron 30.0%
TCCTAACCTCAAATTAACTT+TGG - Chr5:94386465-94386484 None:intergenic 30.0%
TGAAGAAGATAAGGAGTTTA+TGG + Chr5:94386017-94386036 MsG0580029258.01.T01:CDS 30.0%
TGCAAGCATACAATATAAGT+TGG + Chr5:94388449-94388468 MsG0580029258.01.T01:intron 30.0%
TGCTTAAAATTCAACAACAC+AGG + Chr5:94388536-94388555 MsG0580029258.01.T01:intron 30.0%
TTAAATCACTAAAGGCCAAA+GGG - Chr5:94389115-94389134 None:intergenic 30.0%
TTATCTTCTTCAACAACCAA+TGG - Chr5:94386009-94386028 None:intergenic 30.0%
TTATTAGCCGTATTAATTGG+AGG + Chr5:94389985-94390004 MsG0580029258.01.T01:three_prime_UTR 30.0%
TTGAAAGAATTGACAAGGAA+AGG + Chr5:94389448-94389467 MsG0580029258.01.T01:three_prime_UTR 30.0%
TTGTGGTGTAATCAAGTATT+AGG + Chr5:94386613-94386632 MsG0580029258.01.T01:intron 30.0%
TTTGATGTAATAAACCGATG+AGG + Chr5:94390021-94390040 MsG0580029258.01.T01:three_prime_UTR 30.0%
! AAAATACTTTTAGCATTCGG+CGG + Chr5:94389783-94389802 MsG0580029258.01.T01:three_prime_UTR 30.0%
! AACTAGCTTCTTTACATTCA+CGG + Chr5:94387346-94387365 MsG0580029258.01.T01:CDS 30.0%
! AGTAATTTTATGTGTGTTGC+AGG + Chr5:94387227-94387246 MsG0580029258.01.T01:intron 30.0%
! ATGGTAATGCAATTCTTCAA+AGG - Chr5:94386770-94386789 None:intergenic 30.0%
! CATGGATTTTACATAATGAG+AGG - Chr5:94388364-94388383 None:intergenic 30.0%
! CCCTTTTTATCCATCTATAA+AGG + Chr5:94388909-94388928 MsG0580029258.01.T01:intron 30.0%
! CTACAAAGCCTAATCATTTT+AGG - Chr5:94388859-94388878 None:intergenic 30.0%
! GTTTATCTTCTCTTTTCTTC+AGG + Chr5:94389525-94389544 MsG0580029258.01.T01:intron 30.0%
! TCAAAGTAGGTTTGAAGTTA+GGG + Chr5:94386271-94386290 MsG0580029258.01.T01:intron 30.0%
! TCCAAAGTTAATTTGAGGTT+AGG + Chr5:94386461-94386480 MsG0580029258.01.T01:intron 30.0%
! TGGAACTGAATGAATTGTTT+TGG + Chr5:94386800-94386819 MsG0580029258.01.T01:intron 30.0%
! TTAGCTCCAAAGTTAATTTG+AGG + Chr5:94386456-94386475 MsG0580029258.01.T01:intron 30.0%
! TTCAAAGTAGGTTTGAAGTT+AGG + Chr5:94386270-94386289 MsG0580029258.01.T01:intron 30.0%
!! AGAAGTATCTGAGGAAATTA+GGG + Chr5:94385725-94385744 MsG0580029258.01.T01:CDS 30.0%
!! AGTTTGAGACTTCATTTTGT+TGG - Chr5:94388975-94388994 None:intergenic 30.0%
!! ATACAATATAAGTTGGTGAG+TGG + Chr5:94388456-94388475 MsG0580029258.01.T01:intron 30.0%
!! ATACTTGTTATGTACTTGGT+TGG - Chr5:94388487-94388506 None:intergenic 30.0%
!! ATGAGTCTTTAACTTGATTG+TGG + Chr5:94388814-94388833 MsG0580029258.01.T01:intron 30.0%
!! GTTTGAGACTTCATTTTGTT+GGG - Chr5:94388974-94388993 None:intergenic 30.0%
!! TCTAGTGTCATTGTGTTTTA+TGG + Chr5:94386724-94386743 MsG0580029258.01.T01:intron 30.0%
!!! CATATTTTTGCTTTTAGAGC+TGG + Chr5:94387618-94387637 MsG0580029258.01.T01:intron 30.0%
!!! CTGAATGAATTGTTTTGGAA+TGG + Chr5:94386805-94386824 MsG0580029258.01.T01:intron 30.0%
AAAAAAGAATTGCGTCTGCA+TGG + Chr5:94386490-94386509 MsG0580029258.01.T01:intron 35.0%
AACCGAAATCTGAATCGAAT+CGG - Chr5:94385012-94385031 None:intergenic 35.0%
AACTTGACTTCTAAATCTGC+TGG + Chr5:94388127-94388146 MsG0580029258.01.T01:intron 35.0%
AAGTTCAAGTGATTCGTGTT+TGG + Chr5:94385364-94385383 MsG0580029258.01.T01:intron 35.0%
AATCGAAGTTACAGATGCTA+AGG - Chr5:94387551-94387570 None:intergenic 35.0%
AATCTGAATCGAATCGGATT+CGG - Chr5:94385006-94385025 None:intergenic 35.0%
AATGGAACCAAACATACACT+TGG + Chr5:94385505-94385524 MsG0580029258.01.T01:intron 35.0%
ACACAACAACATCAAACATC+TGG + Chr5:94387084-94387103 MsG0580029258.01.T01:intron 35.0%
ACTTATCCATAAGGTTATGC+AGG - Chr5:94387837-94387856 None:intergenic 35.0%
ACTTGAATAGAATGCGAGTT+TGG + Chr5:94388781-94388800 MsG0580029258.01.T01:intron 35.0%
ACTTGATTACACCACAAACA+AGG - Chr5:94386610-94386629 None:intergenic 35.0%
ATAAACTCCACGAATACCTT+GGG + Chr5:94387250-94387269 MsG0580029258.01.T01:CDS 35.0%
ATCGAAGTTACAGATGCTAA+GGG - Chr5:94387550-94387569 None:intergenic 35.0%
ATGAATCAAATGGCAATGAG+GGG + Chr5:94389068-94389087 MsG0580029258.01.T01:intron 35.0%
ATGACTCCATTTCATCATCT+TGG - Chr5:94384786-94384805 None:intergenic 35.0%
ATTCAGATATGACCCAAGTA+TGG - Chr5:94386548-94386567 None:intergenic 35.0%
CAACTTCAAATTGTGATGCT+AGG + Chr5:94389233-94389252 MsG0580029258.01.T01:intron 35.0%
CAATAACCTGCATAACCTTA+TGG + Chr5:94387828-94387847 MsG0580029258.01.T01:intron 35.0%
CAATTGCATTGCATATAGAG+AGG - Chr5:94387958-94387977 None:intergenic 35.0%
CAGCTAAAGATTATACTTGG+AGG - Chr5:94387188-94387207 None:intergenic 35.0%
CCAAATCAGCTATTACATTC+TGG - Chr5:94388184-94388203 None:intergenic 35.0%
CCAGAATGTAATAGCTGATT+TGG + Chr5:94388181-94388200 MsG0580029258.01.T01:intron 35.0%
CGCATTCTATTCAAGTCTAT+AGG - Chr5:94388777-94388796 None:intergenic 35.0%
CTACCAGTCAAATTTATACC+AGG - Chr5:94387909-94387928 None:intergenic 35.0%
CTTGAATAGAATGCGAGTTT+GGG + Chr5:94388782-94388801 MsG0580029258.01.T01:intron 35.0%
GAGATATCAAACCCATATTG+TGG - Chr5:94386317-94386336 None:intergenic 35.0%
GAGGAGAAAAAAAAAAGGAG+TGG - Chr5:94389957-94389976 None:intergenic 35.0%
GATGAATCAAATGGCAATGA+GGG + Chr5:94389067-94389086 MsG0580029258.01.T01:intron 35.0%
GCATAACAAGTTCAAACTGA+TGG - Chr5:94389160-94389179 None:intergenic 35.0%
GTTAAAAGTAGGACTCATTG+TGG + Chr5:94386358-94386377 MsG0580029258.01.T01:intron 35.0%
GTTGCTTCATCCAGAATATT+TGG + Chr5:94387384-94387403 MsG0580029258.01.T01:CDS 35.0%
GTTTGGATACATTCATGTAG+AGG + Chr5:94385381-94385400 MsG0580029258.01.T01:intron 35.0%
TAAGGAGTTTATGGAGAAGA+AGG + Chr5:94386026-94386045 MsG0580029258.01.T01:CDS 35.0%
TCATCAAATAGTGGTAGATC+TGG + Chr5:94388303-94388322 MsG0580029258.01.T01:intron 35.0%
TGACTCCATTTCATCATCTT+GGG - Chr5:94384785-94384804 None:intergenic 35.0%
TGAGCTTGAAAGAATTGACA+AGG + Chr5:94389443-94389462 MsG0580029258.01.T01:three_prime_UTR 35.0%
TGATGAATCAAATGGCAATG+AGG + Chr5:94389066-94389085 MsG0580029258.01.T01:intron 35.0%
TGTAAATGTGGAAACTTTGC+AGG + Chr5:94389407-94389426 MsG0580029258.01.T01:intron 35.0%
TTATCGTGGTTATGTGATTC+CGG + Chr5:94385188-94385207 MsG0580029258.01.T01:CDS 35.0%
TTCAAATTGTGATGCTAGGT+TGG + Chr5:94389237-94389256 MsG0580029258.01.T01:intron 35.0%
TTGAATAGAATGCGAGTTTG+GGG + Chr5:94388783-94388802 MsG0580029258.01.T01:intron 35.0%
! AACTGATGGACAAAATCACA+AGG - Chr5:94389146-94389165 None:intergenic 35.0%
! AATTGATTCTACTCGAAGCT+AGG - Chr5:94385464-94385483 None:intergenic 35.0%
! ATCCGATTCGATTCAGATTT+CGG + Chr5:94385007-94385026 MsG0580029258.01.T01:intron 35.0%
! ATGTTTGGTTCCATTTCTAG+AGG - Chr5:94385500-94385519 None:intergenic 35.0%
! TAGAGAGTATGAACGAATCA+AGG + Chr5:94387486-94387505 MsG0580029258.01.T01:three_prime_UTR 35.0%
! TGTTTGGTTCCATTTCTAGA+GGG - Chr5:94385499-94385518 None:intergenic 35.0%
! TTCATTTTGTTGGGAGCTAT+GGG - Chr5:94388965-94388984 None:intergenic 35.0%
!! GAGAAGTATCTGAGGAAATT+AGG + Chr5:94385724-94385743 MsG0580029258.01.T01:CDS 35.0%
!! GGATTTGCTTAGGATTTTCA+AGG + Chr5:94385942-94385961 MsG0580029258.01.T01:CDS 35.0%
!! GGCATTGATACTTATCCATA+AGG - Chr5:94387846-94387865 None:intergenic 35.0%
!! GGTTGTTGATTTGAATGATG+TGG + Chr5:94385897-94385916 MsG0580029258.01.T01:CDS 35.0%
!!! ATGCAGACGCAATTCTTTTT+TGG - Chr5:94386491-94386510 None:intergenic 35.0%
AAAAAGTTCGGTAGAGAGGA+AGG + Chr5:94385220-94385239 MsG0580029258.01.T01:CDS 40.0%
AAGATTGCTTCAGCGTAAGA+AGG - Chr5:94384913-94384932 None:intergenic 40.0%
ACCATACATGAGATAGTGAG+TGG + Chr5:94388577-94388596 MsG0580029258.01.T01:intron 40.0%
ACGGCTAATAACTAACATGG+AGG - Chr5:94389976-94389995 None:intergenic 40.0%
ACTAATCCAATCAGGGTTGA+TGG + Chr5:94388426-94388445 MsG0580029258.01.T01:intron 40.0%
ACTGCAATGTGACCATACTT+GGG + Chr5:94386533-94386552 MsG0580029258.01.T01:intron 40.0%
ACTTAGCAATGTTTCTCAGC+AGG + Chr5:94386074-94386093 MsG0580029258.01.T01:CDS 40.0%
ACTTCCTAACATGCACTAAG+AGG - Chr5:94386217-94386236 None:intergenic 40.0%
ACTTTCAAAACATGCTGCGA+GGG + Chr5:94389478-94389497 MsG0580029258.01.T01:three_prime_UTR 40.0%
AGCACTCTCAGTTACTCTAA+CGG - Chr5:94387452-94387471 None:intergenic 40.0%
ATACGTATCTGATTACGACG+AGG + Chr5:94385093-94385112 MsG0580029258.01.T01:intron 40.0%
ATCTGACCATCTCATATCCA+TGG + Chr5:94388648-94388667 MsG0580029258.01.T01:intron 40.0%
ATGGATATGAGATGGTCAGA+TGG - Chr5:94388649-94388668 None:intergenic 40.0%
ATTCTATCAGGTGATGCAGA+AGG + Chr5:94385669-94385688 MsG0580029258.01.T01:intron 40.0%
ATTTCCAAACCCACACTAAG+AGG - Chr5:94386408-94386427 None:intergenic 40.0%
CAAAAAGGACTTCAGTGCAT+TGG - Chr5:94389363-94389382 None:intergenic 40.0%
CAAGACATGGGTGAAACAAT+GGG + Chr5:94386920-94386939 MsG0580029258.01.T01:CDS 40.0%
CACCCTGGTATAAATTTGAC+TGG + Chr5:94387903-94387922 MsG0580029258.01.T01:intron 40.0%
CATCCAGCTGATGAATCAAA+TGG + Chr5:94389058-94389077 MsG0580029258.01.T01:intron 40.0%
CATTTGATTCATCAGCTGGA+TGG - Chr5:94389060-94389079 None:intergenic 40.0%
CTAGAAAACTCGAATCAAGC+CGG + Chr5:94384966-94384985 MsG0580029258.01.T01:intron 40.0%
CTAGACGAAAGAGAAAAGGT+TGG - Chr5:94386650-94386669 None:intergenic 40.0%
CTGTCAACAATGCACTTGAT+CGG - Chr5:94387308-94387327 None:intergenic 40.0%
CTTCAGGCTGTTATGTTACT+TGG + Chr5:94389541-94389560 MsG0580029258.01.T01:intron 40.0%
CTTGTCTCCACCAAATATTC+TGG - Chr5:94387397-94387416 None:intergenic 40.0%
GATAAACTCCACGAATACCT+TGG + Chr5:94387249-94387268 MsG0580029258.01.T01:CDS 40.0%
GATGTAATAAACCGATGAGG+CGG + Chr5:94390024-94390043 MsG0580029258.01.T01:three_prime_UTR 40.0%
GCTTCATCCAGAATATTTGG+TGG + Chr5:94387387-94387406 MsG0580029258.01.T01:CDS 40.0%
GGATCGAGGAATGAATTGAA+CGG - Chr5:94384889-94384908 None:intergenic 40.0%
GGGAATGTTAGATGCATCTA+TGG - Chr5:94388891-94388910 None:intergenic 40.0%
GTATGATAACTACTTCCACC+TGG - Chr5:94385077-94385096 None:intergenic 40.0%
GTCAAGTTTCAGCAAGACAT+GGG + Chr5:94386908-94386927 MsG0580029258.01.T01:CDS 40.0%
GTCTTGCTGAAACTTGACAA+GGG - Chr5:94386906-94386925 None:intergenic 40.0%
TCAAGTCTATAGGAGTCTAC+TGG - Chr5:94388767-94388786 None:intergenic 40.0%
TCAGTTCCACGTGACAAAAA+TGG - Chr5:94386789-94386808 None:intergenic 40.0%
TCCACTCACTATCTCATGTA+TGG - Chr5:94388581-94388600 None:intergenic 40.0%
TCGACTAGACGAAAGAGAAA+AGG - Chr5:94386654-94386673 None:intergenic 40.0%
TCTGTTAGTAATGATTGGGG+AGG + Chr5:94385976-94385995 MsG0580029258.01.T01:CDS 40.0%
TGTCAAGTTTCAGCAAGACA+TGG + Chr5:94386907-94386926 MsG0580029258.01.T01:CDS 40.0%
TGTCTTGCTGAAACTTGACA+AGG - Chr5:94386907-94386926 None:intergenic 40.0%
TGTTCCATTGAGAGCTTCAT+TGG + Chr5:94388265-94388284 MsG0580029258.01.T01:intron 40.0%
TTACGACGAGGACTGAAAAT+CGG + Chr5:94385105-94385124 MsG0580029258.01.T01:intron 40.0%
TTCACTTCATTCGACACCAA+CGG + Chr5:94384931-94384950 MsG0580029258.01.T01:CDS 40.0%
! AAAGTGGAAGGGATTTGCTT+AGG + Chr5:94385932-94385951 MsG0580029258.01.T01:CDS 40.0%
! CATCTGCATTTACTTGTTGC+AGG + Chr5:94386874-94386893 MsG0580029258.01.T01:intron 40.0%
! CTCTACATCACGTGTTTTAC+AGG + Chr5:94389596-94389615 MsG0580029258.01.T01:intron 40.0%
! CTTCATTTTGTTGGGAGCTA+TGG - Chr5:94388966-94388985 None:intergenic 40.0%
! GAAGGGAAGCACAAATTTAC+AGG - Chr5:94387584-94387603 None:intergenic 40.0%
! GGAGAAGAAGGATAAGTTGA+TGG + Chr5:94386038-94386057 MsG0580029258.01.T01:CDS 40.0%
! GTTTGGTTCCATTTCTAGAG+GGG - Chr5:94385498-94385517 None:intergenic 40.0%
! TATTAGTGTCATTCACACCC+TGG + Chr5:94387888-94387907 MsG0580029258.01.T01:intron 40.0%
! TCGTTTGCTGCCTTTATAGA+TGG - Chr5:94388922-94388941 None:intergenic 40.0%
! TTGCCATTTGATTCATCAGC+TGG - Chr5:94389064-94389083 None:intergenic 40.0%
!! AATTTTGGCCCCTCTAGAAA+TGG + Chr5:94385487-94385506 MsG0580029258.01.T01:intron 40.0%
!! AGAGTGTTTTTGCAGGTTCA+AGG + Chr5:94385781-94385800 MsG0580029258.01.T01:CDS 40.0%
!! GAAAATCGGAGTTTGGTGTA+AGG + Chr5:94385119-94385138 MsG0580029258.01.T01:intron 40.0%
!! GAGTGTTTTTGCAGGTTCAA+GGG + Chr5:94385782-94385801 MsG0580029258.01.T01:CDS 40.0%
!! GCATTACCATTTTTGTCACG+TGG + Chr5:94386780-94386799 MsG0580029258.01.T01:intron 40.0%
!! GGCTTGATTCGAGTTTTCTA+GGG - Chr5:94384967-94384986 None:intergenic 40.0%
!! GTCAGCAAAAGCATTGTTGA+TGG - Chr5:94387286-94387305 None:intergenic 40.0%
AAAGAGAACTACACCACCCT+AGG - Chr5:94389263-94389282 None:intergenic 45.0%
AAAGGCCAAAGGGTGAAATG+TGG - Chr5:94389105-94389124 None:intergenic 45.0%
ACATGCACTAAGAGGACACA+AGG - Chr5:94386209-94386228 None:intergenic 45.0%
ACTATGAAAAGCCGCCTCAT+CGG - Chr5:94390038-94390057 None:intergenic 45.0%
ATAGAATGCGAGTTTGGGGA+CGG + Chr5:94388787-94388806 MsG0580029258.01.T01:intron 45.0%
ATCCACCACATTTCACCCTT+TGG + Chr5:94389097-94389116 MsG0580029258.01.T01:intron 45.0%
ATTGCTTCAGCGTAAGAAGG+AGG - Chr5:94384910-94384929 None:intergenic 45.0%
CATAACCATGGTTGCAAGTC+TGG + Chr5:94389008-94389027 MsG0580029258.01.T01:intron 45.0%
CATCAGCTGGATGGTCTATT+GGG - Chr5:94389051-94389070 None:intergenic 45.0%
CATGCACTAAGAGGACACAA+GGG - Chr5:94386208-94386227 None:intergenic 45.0%
CGCTTCCCAAGATGATGAAA+TGG + Chr5:94384777-94384796 MsG0580029258.01.T01:CDS 45.0%
GACAGCAGCTAGAATGTACT+TGG + Chr5:94389686-94389705 MsG0580029258.01.T01:three_prime_UTR 45.0%
GACTGCAATGTGACCATACT+TGG + Chr5:94386532-94386551 MsG0580029258.01.T01:intron 45.0%
GACTTTCAAAACATGCTGCG+AGG + Chr5:94389477-94389496 MsG0580029258.01.T01:three_prime_UTR 45.0%
GAGGACTGAAAATCGGAGTT+TGG + Chr5:94385112-94385131 MsG0580029258.01.T01:intron 45.0%
GCAAGACATGGGTGAAACAA+TGG + Chr5:94386919-94386938 MsG0580029258.01.T01:CDS 45.0%
GGTAGAGAGGAAGGTAATGT+TGG + Chr5:94385229-94385248 MsG0580029258.01.T01:intron 45.0%
GTGAAACAATGGGTGAGCTA+GGG + Chr5:94386930-94386949 MsG0580029258.01.T01:CDS 45.0%
GTGTCCTCTTAGTGCATGTT+AGG + Chr5:94386210-94386229 MsG0580029258.01.T01:intron 45.0%
TAACTCGAGATTTGCAGCCA+TGG - Chr5:94388668-94388687 None:intergenic 45.0%
TACATTGTCGGAGCGGTTAT+CGG + Chr5:94385161-94385180 MsG0580029258.01.T01:CDS 45.0%
TAGGGTTGCATCCTGTGATT+GGG + Chr5:94385743-94385762 MsG0580029258.01.T01:CDS 45.0%
TCATCAGCTGGATGGTCTAT+TGG - Chr5:94389052-94389071 None:intergenic 45.0%
TCGAGTTAACTCAGAATCGC+AGG + Chr5:94388680-94388699 MsG0580029258.01.T01:intron 45.0%
TCGCAGGAGTTTATCACTCT+AGG + Chr5:94388696-94388715 MsG0580029258.01.T01:intron 45.0%
TCTTTCCAGACTTGCAACCA+TGG - Chr5:94389016-94389035 None:intergenic 45.0%
TGGTGGAGACAAGTCTATTG+CGG + Chr5:94387404-94387423 MsG0580029258.01.T01:CDS 45.0%
TTAGGGTTGCATCCTGTGAT+TGG + Chr5:94385742-94385761 MsG0580029258.01.T01:CDS 45.0%
TTCGGGAGTGGTTACATTGT+CGG + Chr5:94385149-94385168 MsG0580029258.01.T01:CDS 45.0%
TTCGGTTTCTGATCCTCAAG+AGG + Chr5:94385025-94385044 MsG0580029258.01.T01:intron 45.0%
TTGCAGCCATGGATATGAGA+TGG - Chr5:94388657-94388676 None:intergenic 45.0%
TTGGTGTAAGGAGGAGGTTT+CGG + Chr5:94385131-94385150 MsG0580029258.01.T01:intron 45.0%
TTTGAATGATGTGGCTCAGC+CGG + Chr5:94385906-94385925 MsG0580029258.01.T01:CDS 45.0%
! ACATCACGTGTTTTACAGGC+AGG + Chr5:94389600-94389619 MsG0580029258.01.T01:intron 45.0%
! GATAGTGAGTGGAGTATCCA+AGG + Chr5:94388588-94388607 MsG0580029258.01.T01:intron 45.0%
! GGTGATTTAGGACTTTGCGA+TGG - Chr5:94384868-94384887 None:intergenic 45.0%
!! AAATCCCTTCCACTTTTCGC+CGG - Chr5:94385928-94385947 None:intergenic 45.0%
!! AAGGGTGAAATGTGGTGGAT+TGG - Chr5:94389097-94389116 None:intergenic 45.0%
!! AATCGGAGTTTGGTGTAAGG+AGG + Chr5:94385122-94385141 MsG0580029258.01.T01:intron 45.0%
!! AGGGTGAAATGTGGTGGATT+GGG - Chr5:94389096-94389115 None:intergenic 45.0%
!! CCTCTCTACCGAACTTTTTC+CGG - Chr5:94385219-94385238 None:intergenic 45.0%
!! CGGCTTGATTCGAGTTTTCT+AGG - Chr5:94384968-94384987 None:intergenic 45.0%
!! TAGCGTTGGAGAAGTATCTG+AGG + Chr5:94385716-94385735 MsG0580029258.01.T01:CDS 45.0%
!!! GGAGTTGAGAGTGTTTTTGC+AGG + Chr5:94385774-94385793 MsG0580029258.01.T01:CDS 45.0%
AACAATGGGTGAGCTAGGGT+TGG + Chr5:94386934-94386953 MsG0580029258.01.T01:CDS 50.0%
AACGTTGCCGGAGGAGTTAT+CGG - Chr5:94384839-94384858 None:intergenic 50.0%
AACTCGAATCAAGCCGGATC+CGG + Chr5:94384972-94384991 MsG0580029258.01.T01:intron 50.0%
AAGCGCGAAGAACGTGATCT+TGG - Chr5:94384762-94384781 None:intergenic 50.0%
AAGGGAAGTTGCCGTTGATG+AGG + Chr5:94385800-94385819 MsG0580029258.01.T01:CDS 50.0%
ACATCCGTCGTCCTCATCAA+CGG - Chr5:94385814-94385833 None:intergenic 50.0%
ACCCACACTAAGAGGACACA+AGG - Chr5:94386400-94386419 None:intergenic 50.0%
CCCACACTAAGAGGACACAA+GGG - Chr5:94386399-94386418 None:intergenic 50.0%
CCCTTGTGTCCTCTTAGTGT+GGG + Chr5:94386396-94386415 MsG0580029258.01.T01:intron 50.0%
CCGGAAAAAGTTCGGTAGAG+AGG + Chr5:94385216-94385235 MsG0580029258.01.T01:CDS 50.0%
CGGTTATCGGAGGTTTATCG+TGG + Chr5:94385174-94385193 MsG0580029258.01.T01:CDS 50.0%
CTATCAGGTGATGCAGAAGG+AGG + Chr5:94385672-94385691 MsG0580029258.01.T01:intron 50.0%
CTTGCACCATCAACCCTGAT+TGG - Chr5:94388435-94388454 None:intergenic 50.0%
GAGTGGTTACATTGTCGGAG+CGG + Chr5:94385154-94385173 MsG0580029258.01.T01:CDS 50.0%
GATGCAGAAGGAGGAGTTTG+TGG + Chr5:94385681-94385700 MsG0580029258.01.T01:CDS 50.0%
GCGTCCAATGAAGCTCTCAA+TGG - Chr5:94388272-94388291 None:intergenic 50.0%
GGTGAAACAATGGGTGAGCT+AGG + Chr5:94386929-94386948 MsG0580029258.01.T01:CDS 50.0%
GTAACGAACTCGCTTGTTCC+AGG + Chr5:94385056-94385075 MsG0580029258.01.T01:intron 50.0%
GTATGGTCACATTGCAGTCG+CGG - Chr5:94386531-94386550 None:intergenic 50.0%
GTGGTTATGTGATTCCGGTG+AGG + Chr5:94385193-94385212 MsG0580029258.01.T01:CDS 50.0%
GTGTCCTCTTAGTGTGGGTT+TGG + Chr5:94386401-94386420 MsG0580029258.01.T01:intron 50.0%
GTTACCTCTTGCTCCTCTTG+AGG - Chr5:94385041-94385060 None:intergenic 50.0%
TCCTCACTCTTCCCAATCAC+AGG - Chr5:94385757-94385776 None:intergenic 50.0%
TCCTGTGATTGGGAAGAGTG+AGG + Chr5:94385753-94385772 MsG0580029258.01.T01:CDS 50.0%
TGATCCTCAAGAGGAGCAAG+AGG + Chr5:94385034-94385053 MsG0580029258.01.T01:intron 50.0%
TGATGGCTAGCATTGTCCCA+AGG - Chr5:94387269-94387288 None:intergenic 50.0%
TGCTGTGTGGGAAAAGCTTG+CGG + Chr5:94389640-94389659 MsG0580029258.01.T01:three_prime_UTR 50.0%
TGGCGTCAAGGATGCTTGAT+GGG + Chr5:94385833-94385852 MsG0580029258.01.T01:CDS 50.0%
TGGTGTAAGGAGGAGGTTTC+GGG + Chr5:94385132-94385151 MsG0580029258.01.T01:intron 50.0%
TTATGTGATTCCGGTGAGGC+CGG + Chr5:94385197-94385216 MsG0580029258.01.T01:CDS 50.0%
! GCATTGTCCCAAGGTATTCG+TGG - Chr5:94387260-94387279 None:intergenic 50.0%
!! AAAGGAGTGGCTTGCTGTGA+TGG - Chr5:94389944-94389963 None:intergenic 50.0%
!! GCGAGGGTTTGTTGTCAATC+AGG + Chr5:94389494-94389513 MsG0580029258.01.T01:three_prime_UTR 50.0%
!! TGTGATGCTAGGTTGGCCTA+GGG + Chr5:94389244-94389263 MsG0580029258.01.T01:intron 50.0%
!! TTGTGATGCTAGGTTGGCCT+AGG + Chr5:94389243-94389262 MsG0580029258.01.T01:intron 50.0%
AATCAAGCCGGATCCGGATC+GGG + Chr5:94384978-94384997 MsG0580029258.01.T01:intron 55.0%
ACGAACTCGCTTGTTCCAGG+TGG + Chr5:94385059-94385078 MsG0580029258.01.T01:intron 55.0%
AGGAGGAGTTTGTGGAGCAG+AGG + Chr5:94385689-94385708 MsG0580029258.01.T01:CDS 55.0%
AGGCAGGCTATGCAGAGAGA+TGG + Chr5:94389616-94389635 MsG0580029258.01.T01:intron 55.0%
ATTGTCGGAGCGGTTATCGG+AGG + Chr5:94385164-94385183 MsG0580029258.01.T01:CDS 55.0%
CAGAGAGATGGCTGCTGTGT+GGG + Chr5:94389628-94389647 MsG0580029258.01.T01:three_prime_UTR 55.0%
CAGCGTAAGAAGGAGGATCG+AGG - Chr5:94384903-94384922 None:intergenic 55.0%
CGATGGCTGTTGAACGTTGC+CGG - Chr5:94384851-94384870 None:intergenic 55.0%
CGGTGAGGCCGGAAAAAGTT+CGG + Chr5:94385208-94385227 MsG0580029258.01.T01:CDS 55.0%
GAATCAAGCCGGATCCGGAT+CGG + Chr5:94384977-94384996 MsG0580029258.01.T01:intron 55.0%
GCCCTTGTGTCCTCTTAGTG+TGG + Chr5:94386204-94386223 MsG0580029258.01.T01:intron 55.0%
GGAGCAGAGGAGATTAGCGT+TGG + Chr5:94385702-94385721 MsG0580029258.01.T01:CDS 55.0%
GGCCAAAGGGTGAAATGTGG+TGG - Chr5:94389102-94389121 None:intergenic 55.0%
GGCGTCAAGGATGCTTGATG+GGG + Chr5:94385834-94385853 MsG0580029258.01.T01:CDS 55.0%
GTCAAGGATGCTTGATGGGG+CGG + Chr5:94385837-94385856 MsG0580029258.01.T01:CDS 55.0%
GTGGCGTCAAGGATGCTTGA+TGG + Chr5:94385832-94385851 MsG0580029258.01.T01:CDS 55.0%
TAAGGAGGAGGTTTCGGGAG+TGG + Chr5:94385137-94385156 MsG0580029258.01.T01:intron 55.0%
TCAGCCGGCGAAAAGTGGAA+GGG + Chr5:94385921-94385940 MsG0580029258.01.T01:CDS 55.0%
! ATCGGATTCGGTTCCCGATC+CGG - Chr5:94384994-94385013 None:intergenic 55.0%
! CTAGGGTTGATCGTGACCGT+TGG - Chr5:94384950-94384969 None:intergenic 55.0%
! GTTGATGAGGACGACGGATG+TGG + Chr5:94385813-94385832 MsG0580029258.01.T01:CDS 55.0%
! GTTGCCGTTGATGAGGACGA+CGG + Chr5:94385807-94385826 MsG0580029258.01.T01:CDS 55.0%
!! CGAACTTTTTCCGGCCTCAC+CGG - Chr5:94385210-94385229 None:intergenic 55.0%
!! CGGAGTTTGGTGTAAGGAGG+AGG + Chr5:94385125-94385144 MsG0580029258.01.T01:intron 55.0%
!! TTGGGGAGGTGCTAAGCCAT+TGG + Chr5:94385990-94386009 MsG0580029258.01.T01:CDS 55.0%
CTCAGCCGGCGAAAAGTGGA+AGG + Chr5:94385920-94385939 MsG0580029258.01.T01:CDS 60.0%
GCAGAGAGATGGCTGCTGTG+TGG + Chr5:94389627-94389646 MsG0580029258.01.T01:three_prime_UTR 60.0%
GGAGTTATCGGCGCCGTTGT+CGG - Chr5:94384827-94384846 None:intergenic 60.0%
TGGCTGTTGAACGTTGCCGG+AGG - Chr5:94384848-94384867 None:intergenic 60.0%
TTCGGTTCCCGATCCGGATC+CGG - Chr5:94384988-94385007 None:intergenic 60.0%
! AGCTGTTTGGGGCGGAGAGT+GGG + Chr5:94385875-94385894 MsG0580029258.01.T01:CDS 60.0%
!! AACGGCGCCGATAACTCCTC+CGG + Chr5:94384829-94384848 MsG0580029258.01.T01:CDS 60.0%
!! GATGCTAGGTTGGCCTAGGG+TGG + Chr5:94389247-94389266 MsG0580029258.01.T01:intron 60.0%
AGGCTGCCACGGCAGCTGTT+TGG + Chr5:94385862-94385881 MsG0580029258.01.T01:CDS 65.0%
CTCCACGACGACGCCGACAA+CGG + Chr5:94384811-94384830 MsG0580029258.01.T01:CDS 65.0%
GCTGCCACGGCAGCTGTTTG+GGG + Chr5:94385864-94385883 MsG0580029258.01.T01:CDS 65.0%
GGACGACGGATGTGGCGTCA+AGG + Chr5:94385821-94385840 MsG0580029258.01.T01:CDS 65.0%
GGATGCTTGATGGGGCGGTG+AGG + Chr5:94385842-94385861 MsG0580029258.01.T01:CDS 65.0%
GGCTGCCACGGCAGCTGTTT+GGG + Chr5:94385863-94385882 MsG0580029258.01.T01:CDS 65.0%
GTGGCTCAGCCGGCGAAAAG+TGG + Chr5:94385916-94385935 MsG0580029258.01.T01:CDS 65.0%
! CAGCTGTTTGGGGCGGAGAG+TGG + Chr5:94385874-94385893 MsG0580029258.01.T01:CDS 65.0%
! GCTGTTTGGGGCGGAGAGTG+GGG + Chr5:94385876-94385895 MsG0580029258.01.T01:CDS 65.0%
ATGGGGCGGTGAGGCTGCCA+CGG + Chr5:94385851-94385870 MsG0580029258.01.T01:CDS 70.0%
GCCACGGCAGCTGTTTGGGG+CGG + Chr5:94385867-94385886 MsG0580029258.01.T01:CDS 70.0%
TCCGCCCCAAACAGCTGCCG+TGG - Chr5:94385871-94385890 None:intergenic 70.0%
CGCCGTTGTCGGCGTCGTCG+TGG - Chr5:94384816-94384835 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 94384754 94390082 94384754 ID=MsG0580029258.01;Name=MsG0580029258.01
Chr5 mRNA 94384754 94390082 94384754 ID=MsG0580029258.01.T01;Parent=MsG0580029258.01;Name=MsG0580029258.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.66|0.57|1|0.66|0.57|7|625|322
Chr5 exon 94384754 94384952 94384754 ID=MsG0580029258.01.T01:exon:49867;Parent=MsG0580029258.01.T01
Chr5 exon 94385141 94385241 94385141 ID=MsG0580029258.01.T01:exon:49868;Parent=MsG0580029258.01.T01
Chr5 exon 94385679 94386095 94385679 ID=MsG0580029258.01.T01:exon:49869;Parent=MsG0580029258.01.T01
Chr5 exon 94386896 94386961 94386896 ID=MsG0580029258.01.T01:exon:49870;Parent=MsG0580029258.01.T01
Chr5 exon 94387249 94387507 94387249 ID=MsG0580029258.01.T01:exon:49871;Parent=MsG0580029258.01.T01
Chr5 exon 94389429 94389515 94389429 ID=MsG0580029258.01.T01:exon:49872;Parent=MsG0580029258.01.T01
Chr5 exon 94389618 94390082 94389618 ID=MsG0580029258.01.T01:exon:49873;Parent=MsG0580029258.01.T01
Chr5 CDS 94384754 94384952 94384754 ID=MsG0580029258.01.T01:cds;Parent=MsG0580029258.01.T01
Chr5 CDS 94385141 94385241 94385141 ID=MsG0580029258.01.T01:cds;Parent=MsG0580029258.01.T01
Chr5 CDS 94385679 94386095 94385679 ID=MsG0580029258.01.T01:cds;Parent=MsG0580029258.01.T01
Chr5 CDS 94386896 94386961 94386896 ID=MsG0580029258.01.T01:cds;Parent=MsG0580029258.01.T01
Chr5 CDS 94387249 94387434 94387249 ID=MsG0580029258.01.T01:cds;Parent=MsG0580029258.01.T01
Chr5 three_prime_UTR 94387435 94387507 94387435 ID=MsG0580029258.01.T01:three_prime_utr;Parent=MsG0580029258.01.T01
Chr5 three_prime_UTR 94389429 94389515 94389429 ID=MsG0580029258.01.T01:three_prime_utr;Parent=MsG0580029258.01.T01
Chr5 three_prime_UTR 94389618 94390082 94389618 ID=MsG0580029258.01.T01:three_prime_utr;Parent=MsG0580029258.01.T01
Gene Sequence

>MsG0580029258.01.T01

ATGAACCAAGATCACGTTCTTCGCGCTTCCCAAGATGATGAAATGGAGTCATTAGTTCTCCACGACGACGCCGACAACGGCGCCGATAACTCCTCCGGCAACGTTCAACAGCCATCGCAAAGTCCTAAATCACCGTTCAATTCATTCCTCGATCCTCCTTCTTACGCTGAAGCAATCTTCACTTCATTCGACACCAACGGAGGAGGTTTCGGGAGTGGTTACATTGTCGGAGCGGTTATCGGAGGTTTATCGTGGTTATGTGATTCCGGTGAGGCCGGAAAAAGTTCGGTAGAGAGGAAGGTGATGCAGAAGGAGGAGTTTGTGGAGCAGAGGAGATTAGCGTTGGAGAAGTATCTGAGGAAATTAGGGTTGCATCCTGTGATTGGGAAGAGTGAGGAGTTGAGAGTGTTTTTGCAGGTTCAAGGGAAGTTGCCGTTGATGAGGACGACGGATGTGGCGTCAAGGATGCTTGATGGGGCGGTGAGGCTGCCACGGCAGCTGTTTGGGGCGGAGAGTGGGGTTGTTGATTTGAATGATGTGGCTCAGCCGGCGAAAAGTGGAAGGGATTTGCTTAGGATTTTCAAGGAGTTGAAACAATCTGTTAGTAATGATTGGGGAGGTGCTAAGCCATTGGTTGTTGAAGAAGATAAGGAGTTTATGGAGAAGAAGGATAAGTTGATGGAGTTTGAACAACAACTTAGCAATGTTTCTCAGCAGGCTGAATCCCTTGTCAAGTTTCAGCAAGACATGGGTGAAACAATGGGTGAGCTAGGGTTGGCTTTTGATAAACTCCACGAATACCTTGGGACAATGCTAGCCATCAACAATGCTTTTGCTGACCGATCAAGTGCATTGTTGACAGTTCAAACACTTTCATCAGAACTAGCTTCTTTACATTCACGGATTGAGAAGCTCGAAGTTGCTTCATCCAGAATATTTGGTGGAGACAAGTCTATTGCGGAAAATTGA

Protein sequence

>MsG0580029258.01.T01

MNQDHVLRASQDDEMESLVLHDDADNGADNSSGNVQQPSQSPKSPFNSFLDPPSYAEAIFTSFDTNGGGFGSGYIVGAVIGGLSWLCDSGEAGKSSVERKVMQKEEFVEQRRLALEKYLRKLGLHPVIGKSEELRVFLQVQGKLPLMRTTDVASRMLDGAVRLPRQLFGAESGVVDLNDVAQPAKSGRDLLRIFKELKQSVSNDWGGAKPLVVEEDKEFMEKKDKLMEFEQQLSNVSQQAESLVKFQQDMGETMGELGLAFDKLHEYLGTMLAINNAFADRSSALLTVQTLSSELASLHSRIEKLEVASSRIFGGDKSIAEN*