Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880280 | XP_003609937.1 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 695 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880280 | sp|Q40134|RAD51_SOLLC | 88.304 | 342 | 39 | 1 | 1 | 341 | 1 | 342 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880280 | G7JS36 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 695 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030070 | Msa0880280 | 0.813768 | 2.165187e-51 | -8.615850e-47 |
| Msa0032230 | Msa0880280 | 0.864112 | 1.536533e-64 | -8.615850e-47 |
| Msa0093210 | Msa0880280 | 0.990610 | 1.858742e-183 | -8.615850e-47 |
| Msa0100600 | Msa0880280 | 0.816091 | 6.611673e-52 | -8.615850e-47 |
| Msa0100890 | Msa0880280 | 0.805598 | 1.235764e-49 | -8.615850e-47 |
| Msa0618990 | Msa0880280 | 0.819950 | 8.872603e-53 | -8.615850e-47 |
| Msa0625620 | Msa0880280 | 0.812514 | 4.079551e-51 | -8.615850e-47 |
| Msa0640800 | Msa0880280 | 0.825236 | 5.232406e-54 | -8.615850e-47 |
| Msa0705180 | Msa0880280 | 0.800780 | 1.227417e-48 | -8.615850e-47 |
| Msa0707260 | Msa0880280 | 0.817072 | 3.986878e-52 | -8.615850e-47 |
| Msa0708980 | Msa0880280 | 0.801760 | 7.734939e-49 | -8.615850e-47 |
| Msa0737020 | Msa0880280 | 0.825579 | 4.341518e-54 | -8.615850e-47 |
| Msa0125590 | Msa0880280 | 0.833208 | 6.084745e-56 | -8.615850e-47 |
| Msa0127270 | Msa0880280 | 0.853831 | 1.841748e-61 | -8.615850e-47 |
| Msa0129960 | Msa0880280 | 0.828157 | 1.051024e-54 | -8.615850e-47 |
| Msa0170070 | Msa0880280 | 0.801891 | 7.270375e-49 | -8.615850e-47 |
| Msa0172510 | Msa0880280 | 0.819710 | 1.006856e-52 | -8.615850e-47 |
| Msa0180100 | Msa0880280 | -0.806465 | 8.116982e-50 | -8.615850e-47 |
| Msa0192050 | Msa0880280 | 0.809496 | 1.839083e-50 | -8.615850e-47 |
| Msa0236820 | Msa0880280 | 0.808030 | 3.784172e-50 | -8.615850e-47 |
| Msa0380490 | Msa0880280 | 0.802144 | 6.448694e-49 | -8.615850e-47 |
| Msa0382230 | Msa0880280 | 0.829336 | 5.448301e-55 | -8.615850e-47 |
| Msa0388620 | Msa0880280 | 0.800817 | 1.206181e-48 | -8.615850e-47 |
| Msa0416210 | Msa0880280 | 0.820106 | 8.174619e-53 | -8.615850e-47 |
| Msa0433630 | Msa0880280 | 0.827383 | 1.612418e-54 | -8.615850e-47 |
| Msa0456670 | Msa0880280 | 0.824733 | 6.877597e-54 | -8.615850e-47 |
| Msa0468620 | Msa0880280 | 0.813891 | 2.034559e-51 | -8.615850e-47 |
| Msa0507020 | Msa0880280 | 0.800484 | 1.410658e-48 | -8.615850e-47 |
| Msa0514500 | Msa0880280 | 0.813071 | 3.081367e-51 | -8.615850e-47 |
| Msa0520680 | Msa0880280 | 0.820817 | 5.614045e-53 | -8.615850e-47 |
| Msa0521510 | Msa0880280 | 0.826545 | 2.558383e-54 | -8.615850e-47 |
| Msa0544410 | Msa0880280 | 0.821380 | 4.164818e-53 | -8.615850e-47 |
| Msa0544430 | Msa0880280 | 0.824047 | 9.974411e-54 | -8.615850e-47 |
| Msa0572830 | Msa0880280 | 0.813824 | 2.104547e-51 | -8.615850e-47 |
| Msa0584530 | Msa0880280 | 0.804034 | 2.621367e-49 | -8.615850e-47 |
| Msa0586200 | Msa0880280 | 0.800283 | 1.550076e-48 | -8.615850e-47 |
| Msa0846900 | Msa0880280 | 0.821522 | 3.860859e-53 | -8.615850e-47 |
| Msa0880280 | Msa0926310 | 0.830538 | 2.775641e-55 | -8.615850e-47 |
| Msa0880280 | Msa1000780 | 0.847674 | 9.961971e-60 | -8.615850e-47 |
| Msa0880280 | Msa1201170 | 0.821890 | 3.174266e-53 | -8.615850e-47 |
| Msa0880280 | Msa1219640 | 0.987491 | 1.889719e-170 | -8.615850e-47 |
| Msa0880280 | Msa1266620 | 0.983569 | 4.202319e-158 | -8.615850e-47 |
| Msa0880280 | Msa1267150 | 0.963823 | 1.468634e-122 | -8.615850e-47 |
| Msa0880280 | Msa1293610 | 0.814855 | 1.245528e-51 | -8.615850e-47 |
| Msa0880280 | Msa1294280 | 0.817375 | 3.407386e-52 | -8.615850e-47 |
| Msa0880280 | Msa1333650 | 0.987402 | 3.971364e-170 | -8.615850e-47 |
| Msa0880280 | Msa1339230 | 0.823964 | 1.043233e-53 | -8.615850e-47 |
| Msa0880280 | Msa1387500 | 0.812738 | 3.644600e-51 | -8.615850e-47 |
| Msa0880280 | Msa1393560 | 0.811665 | 6.249818e-51 | -8.615850e-47 |
| Msa0880280 | Msa1399190 | 0.826135 | 3.203471e-54 | -8.615850e-47 |
| Msa0880280 | Msa1426320 | 0.818993 | 1.466552e-52 | -8.615850e-47 |
| Msa0880280 | Msa1428690 | 0.963317 | 6.146880e-122 | -8.615850e-47 |
| Msa0880280 | Msa1435100 | 0.820664 | 6.085060e-53 | -8.615850e-47 |
| Msa0880280 | Msa1439730 | 0.828548 | 8.458647e-55 | -8.615850e-47 |
| Msa0880280 | Msa1444930 | 0.964221 | 4.704816e-123 | -8.615850e-47 |
| Msa0880280 | Msa1461260 | 0.833879 | 4.139302e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880280 | MtrunA17_Chr4g0069901 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 695 |
| Msa0880280 | MtrunA17_Chr1g0204601 | 54.817 | 301 | 135 | 1 | 27 | 327 | 32 | 331 | 2.23e-112 | 330 |
| Msa0880280 | MtrunA17_Chr4g0011421 | 30.723 | 332 | 185 | 9 | 42 | 338 | 15 | 336 | 3.56e-30 | 117 |
| Msa0880280 | MtrunA17_Chr4g0062441 | 33.463 | 257 | 140 | 7 | 104 | 338 | 11 | 258 | 1.14e-29 | 114 |
| Msa0880280 | MtrunA17_Chr5g0443271 | 40.741 | 135 | 58 | 2 | 193 | 327 | 17 | 129 | 9.95e-23 | 92.8 |
| Msa0880280 | MtrunA17_Chr2g0305351 | 28.938 | 273 | 166 | 7 | 93 | 340 | 11 | 280 | 7.81e-21 | 90.9 |
| Msa0880280 | MtrunA17_Chr2g0325901 | 29.119 | 261 | 151 | 7 | 103 | 336 | 101 | 354 | 1.78e-19 | 88.6 |
| Msa0880280 | MtrunA17_Chr4g0030771 | 27.386 | 241 | 143 | 8 | 104 | 327 | 89 | 314 | 1.69e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880280 | AT5G20850.1 | 87.683 | 341 | 40 | 1 | 1 | 341 | 4 | 342 | 0.0 | 624 |
| Msa0880280 | AT5G20850.2 | 88.040 | 301 | 34 | 1 | 1 | 301 | 4 | 302 | 0.0 | 557 |
| Msa0880280 | AT3G22880.1 | 53.651 | 315 | 145 | 1 | 27 | 341 | 31 | 344 | 3.70e-116 | 340 |
| Msa0880280 | AT3G22880.2 | 53.821 | 301 | 138 | 1 | 27 | 327 | 31 | 330 | 6.51e-111 | 326 |
| Msa0880280 | AT2G45280.1 | 31.000 | 300 | 169 | 7 | 42 | 312 | 36 | 326 | 1.23e-25 | 105 |
| Msa0880280 | AT2G45280.2 | 32.661 | 248 | 136 | 6 | 87 | 312 | 112 | 350 | 3.53e-25 | 105 |
| Msa0880280 | AT5G57450.2 | 27.465 | 284 | 160 | 6 | 103 | 340 | 20 | 303 | 4.65e-24 | 100 |
| Msa0880280 | AT5G57450.1 | 27.465 | 284 | 160 | 6 | 103 | 340 | 20 | 303 | 4.65e-24 | 100 |
| Msa0880280 | AT2G28560.3 | 29.057 | 265 | 156 | 7 | 103 | 341 | 51 | 309 | 2.38e-20 | 90.9 |
| Msa0880280 | AT2G28560.1 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 3.79e-20 | 90.5 |
| Msa0880280 | AT2G28560.6 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 4.18e-20 | 90.5 |
| Msa0880280 | AT2G28560.5 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 4.18e-20 | 90.5 |
| Msa0880280 | AT2G28560.2 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 4.18e-20 | 90.5 |
| Msa0880280 | AT2G28560.4 | 30.556 | 180 | 113 | 4 | 103 | 274 | 51 | 226 | 1.12e-15 | 75.9 |
| Msa0880280 | AT1G07745.1 | 25.941 | 239 | 154 | 6 | 76 | 306 | 64 | 287 | 1.06e-12 | 68.6 |
| Msa0880280 | AT1G07745.2 | 25.941 | 239 | 154 | 6 | 76 | 306 | 46 | 269 | 1.49e-12 | 67.8 |
Find 96 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGAATCTCTTCGGTTTCT+TGG | 0.161205 | 6_1:+26804676 | None:intergenic |
| GCCACCAATTGGCTTGGTTT+GGG | 0.257944 | 6_1:+26802049 | None:intergenic |
| ATTGCGATTTGTACAGTAAT+TGG | 0.263852 | 6_1:+26804805 | None:intergenic |
| GCCAATTGGTGGCAACATTA+TGG | 0.293831 | 6_1:-26802039 | Msa0880280:CDS |
| GGCTGAAAGCTCCCCTCTTC+CGG | 0.313600 | 6_1:+26802403 | None:intergenic |
| AGTGATTAGTTCTCCTTGTT+TGG | 0.313602 | 6_1:-26801955 | Msa0880280:CDS |
| TGCCACCAATTGGCTTGGTT+TGG | 0.332160 | 6_1:+26802048 | None:intergenic |
| TTGCGATTTGTACAGTAATT+GGG | 0.340715 | 6_1:+26804806 | None:intergenic |
| AGCTGGTAAGCTGGTGCCTA+TGG | 0.346402 | 6_1:-26803802 | Msa0880280:CDS |
| CGTCAACTTGTGAAACTACT+TGG | 0.353913 | 6_1:+26802093 | None:intergenic |
| TGATAACGATAGTTTGTTGC+AGG | 0.356824 | 6_1:-26801723 | Msa0880280:three_prime_UTR |
| GACGGTTCTGCAATGTTTGC+TGG | 0.369464 | 6_1:-26802074 | Msa0880280:CDS |
| TCTGCAATAATGTTGAGTTT+TGG | 0.369673 | 6_1:-26801764 | Msa0880280:three_prime_UTR |
| GGTTCAGACAATGCTAAAAT+TGG | 0.370907 | 6_1:+26801873 | None:intergenic |
| CTAATTTCTGAAGGCTTCTC+AGG | 0.371141 | 6_1:+26802357 | None:intergenic |
| ATTTCGCTAAATGCATTTGC+CGG | 0.371203 | 6_1:+26802381 | None:intergenic |
| AAGAGAGCTTGACAAGATAT+TGG | 0.386237 | 6_1:-26803715 | Msa0880280:CDS |
| TTTACCCGTAGAACAACTTC+AGG | 0.397476 | 6_1:-26804646 | Msa0880280:intron |
| ATGAAGATGAAGATTGAAAG+AGG | 0.407291 | 6_1:+26804845 | None:intergenic |
| GCCATAATGTTGCCACCAAT+TGG | 0.411385 | 6_1:+26802038 | None:intergenic |
| CTCAAGTCGTTGTTGCTCCA+TGG | 0.416061 | 6_1:+26804719 | None:intergenic |
| TTGTATGGTGAATTTCGATC+TGG | 0.418493 | 6_1:-26803554 | Msa0880280:CDS |
| TAATTGTATTCTCAGGCATC+GGG | 0.449868 | 6_1:-26804455 | Msa0880280:intron |
| TACGACAGGTTTGGACTGAA+TGG | 0.457584 | 6_1:-26802841 | Msa0880280:intron |
| CCACCAATTGGCTTGGTTTG+GGG | 0.463690 | 6_1:+26802050 | None:intergenic |
| TTACAATTACAACTAGCAAA+AGG | 0.465295 | 6_1:+26801817 | None:intergenic |
| CAATCAGGTGGAATTGAGAC+GGG | 0.472160 | 6_1:-26803590 | Msa0880280:intron |
| ACTGAATGGTCCTGATGTAT+TGG | 0.472714 | 6_1:-26802827 | Msa0880280:CDS |
| AATCTGTTGCTTATACTCCT+AGG | 0.488123 | 6_1:-26804379 | Msa0880280:CDS |
| GGTTCTATCACCGAGTTGTA+TGG | 0.488506 | 6_1:-26803569 | Msa0880280:CDS |
| ACAGTGCTACTGCTCTCTAT+AGG | 0.490455 | 6_1:-26802436 | Msa0880280:CDS |
| GGACCCCAAACCAAGCCAAT+TGG | 0.494568 | 6_1:-26802053 | Msa0880280:CDS |
| CCACGACAAGGTTAGCTCTC+AGG | 0.496287 | 6_1:-26802007 | Msa0880280:CDS |
| ATTAAGAAGCTTAAAGATGC+AGG | 0.498423 | 6_1:-26804416 | Msa0880280:CDS |
| TAAAATCTGAAACCTTGCTT+CGG | 0.499109 | 6_1:+26801926 | None:intergenic |
| TTTATTGACAGCTGGTAAGC+TGG | 0.500060 | 6_1:-26803811 | Msa0880280:intron |
| AATGTTGCCACCAATTGGCT+TGG | 0.501653 | 6_1:+26802043 | None:intergenic |
| ATTTGCAAAAGATCTTTCCT+AGG | 0.502674 | 6_1:+26804362 | None:intergenic |
| TTCAATGATCTTGTCAACCT+TGG | 0.504239 | 6_1:+26804322 | None:intergenic |
| TGAAGATGAAGATTGAAAGA+GGG | 0.507736 | 6_1:+26804846 | None:intergenic |
| TGAAGTTGTTCTACGGGTAA+AGG | 0.508750 | 6_1:+26804648 | None:intergenic |
| AGGACCGTGTTGAATCTCTT+CGG | 0.510828 | 6_1:+26804668 | None:intergenic |
| CCTCATCTGCTAATTTCTGA+AGG | 0.511857 | 6_1:+26802348 | None:intergenic |
| GCTGGTAAGCTGGTGCCTAT+GGG | 0.516629 | 6_1:-26803801 | Msa0880280:CDS |
| CAAGTAGTTTCACAAGTTGA+CGG | 0.519262 | 6_1:-26802092 | Msa0880280:CDS |
| TAGATGCCGAGGGAACATTT+AGG | 0.520366 | 6_1:-26802965 | Msa0880280:CDS |
| TTAACCTGAAGTTGTTCTAC+GGG | 0.520860 | 6_1:+26804642 | None:intergenic |
| CCATTACAGAGAGGGGAAAG+AGG | 0.522157 | 6_1:+26801661 | None:intergenic |
| TGCGATTTGTACAGTAATTG+GGG | 0.523400 | 6_1:+26804807 | None:intergenic |
| ACTTGAAGCAGCTTCAATGA+TGG | 0.525271 | 6_1:-26802752 | Msa0880280:CDS |
| ATTAACCTGAAGTTGTTCTA+CGG | 0.528625 | 6_1:+26804641 | None:intergenic |
| TTTCGCTAAATGCATTTGCC+GGG | 0.529004 | 6_1:+26802382 | None:intergenic |
| AGGGATTCAAAATGCGTCAA+AGG | 0.539261 | 6_1:+26804865 | None:intergenic |
| CCCCAAACCAAGCCAATTGG+TGG | 0.539489 | 6_1:-26802050 | Msa0880280:CDS |
| CTTGTCAAGCTCTCTTGACC+CGG | 0.542171 | 6_1:+26803722 | None:intergenic |
| CTTCAATGATGGTGGAAACA+AGG | 0.543376 | 6_1:-26802741 | Msa0880280:intron |
| TTAGCTCTCAGGAAAGGAAG+AGG | 0.549474 | 6_1:-26801996 | Msa0880280:CDS |
| TTGTAGTTGCCACTAGATCA+AGG | 0.550547 | 6_1:-26803014 | Msa0880280:intron |
| TCAATCAGGTGGAATTGAGA+CGG | 0.551223 | 6_1:-26803591 | Msa0880280:intron |
| TCGATTATTCAGATAACCAC+CGG | 0.554130 | 6_1:-26803741 | Msa0880280:CDS |
| GCTTCGGCTTCAGCCAAACA+AGG | 0.555538 | 6_1:+26801942 | None:intergenic |
| TGTGTAATTGTAGTTTGGTG+TGG | 0.558015 | 6_1:-26802132 | Msa0880280:intron |
| CAAAGGTATCAGTGATGCCA+AGG | 0.558029 | 6_1:-26804339 | Msa0880280:CDS |
| TCACCTCCTCCTTGATCTAG+TGG | 0.567569 | 6_1:+26803005 | None:intergenic |
| CTAGATCAAGGAGGAGGTGA+GGG | 0.569563 | 6_1:-26803002 | Msa0880280:CDS |
| CCTTCAGAAATTAGCAGATG+AGG | 0.570316 | 6_1:-26802348 | Msa0880280:intron |
| GAAGAGGGGAGCTTTCAGCC+CGG | 0.571563 | 6_1:-26802400 | Msa0880280:CDS |
| TAGCTCTCAGGAAAGGAAGA+GGG | 0.571645 | 6_1:-26801995 | Msa0880280:CDS |
| CCTGAGAGCTAACCTTGTCG+TGG | 0.573304 | 6_1:+26802007 | None:intergenic |
| GTTGACAAGATCATTGAAGC+AGG | 0.573756 | 6_1:-26804317 | Msa0880280:intron |
| GAGCTTGACAAGATATTGGA+AGG | 0.575499 | 6_1:-26803711 | Msa0880280:intron |
| AGCTATGTACATAGATGCCG+AGG | 0.576766 | 6_1:-26802976 | Msa0880280:CDS |
| TGTATGGTGAATTTCGATCT+GGG | 0.581170 | 6_1:-26803553 | Msa0880280:CDS |
| GACTCTTACAGATAGCAGAT+AGG | 0.586304 | 6_1:-26802935 | Msa0880280:intron |
| GTTTGGCTGAAGCCGAAGCA+AGG | 0.588117 | 6_1:-26801938 | Msa0880280:CDS |
| TGAAGCAGCTTCAATGATGG+TGG | 0.599232 | 6_1:-26802749 | Msa0880280:CDS |
| CTGAGGCCTAAATGTTCCCT+CGG | 0.602051 | 6_1:+26802959 | None:intergenic |
| AAGATCGAATCTTTAAACCA+TGG | 0.607413 | 6_1:-26804736 | Msa0880280:exon |
| AGTATAAGCAACAGATTCAA+CGG | 0.607715 | 6_1:+26804385 | None:intergenic |
| GTCAAGCTCTCTTGACCCGG+TGG | 0.607993 | 6_1:+26803725 | None:intergenic |
| ACAAGGTTAGCTCTCAGGAA+AGG | 0.614598 | 6_1:-26802002 | Msa0880280:CDS |
| TTCTCAGGCATCGGGTATAG+CGG | 0.620888 | 6_1:-26804447 | Msa0880280:intron |
| TTGCCACTAGATCAAGGAGG+AGG | 0.623636 | 6_1:-26803008 | Msa0880280:CDS |
| AGCTCTCAGGAAAGGAAGAG+GGG | 0.625477 | 6_1:-26801994 | Msa0880280:CDS |
| ACTAGATCAAGGAGGAGGTG+AGG | 0.625647 | 6_1:-26803003 | Msa0880280:CDS |
| GATAACGATAGTTTGTTGCA+GGG | 0.629808 | 6_1:-26801722 | Msa0880280:three_prime_UTR |
| CGATTATTCAGATAACCACC+GGG | 0.640229 | 6_1:-26803740 | Msa0880280:CDS |
| CTAGCGCTAGTAAAACCCAT+AGG | 0.648850 | 6_1:+26803786 | None:intergenic |
| GCGATTTGTACAGTAATTGG+GGG | 0.652251 | 6_1:+26804808 | None:intergenic |
| TCGAAATTCACCATACAACT+CGG | 0.653941 | 6_1:+26803559 | None:intergenic |
| TGGCTCATGCAACCACGACA+AGG | 0.656550 | 6_1:-26802019 | Msa0880280:CDS |
| ATAACACTGATCATCAGTCA+CGG | 0.679517 | 6_1:-26802780 | Msa0880280:CDS |
| GCTATGTACATAGATGCCGA+GGG | 0.713210 | 6_1:-26802975 | Msa0880280:CDS |
| GCTATCTGTAAGAGTCGCTG+AGG | 0.720598 | 6_1:+26802942 | None:intergenic |
| GAAACCGAAGAGATTCAACA+CGG | 0.755894 | 6_1:-26804672 | Msa0880280:CDS |
| TAGTTGCCACTAGATCAAGG+AGG | 0.810196 | 6_1:-26803011 | Msa0880280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAAATTAGAAATAAT+GGG | + | chr6_1:26801979-26801998 | None:intergenic | 10.0% |
| !! | TAAAAAGAAATTAGAAATAA+TGG | + | chr6_1:26801980-26801999 | None:intergenic | 10.0% |
| !!! | ATTATTTCTAATTTCTTTTT+AGG | - | chr6_1:26801979-26801998 | Msa0880280:CDS | 10.0% |
| !! | CAAAAAAATTATATCATTCA+AGG | + | chr6_1:26804703-26804722 | None:intergenic | 15.0% |
| !!! | TTCACTTTCAATTTTGTTTT+AGG | - | chr6_1:26802264-26802283 | Msa0880280:intron | 20.0% |
| !!! | TCACTTTCAATTTTGTTTTA+GGG | - | chr6_1:26802265-26802284 | Msa0880280:intron | 20.0% |
| !!! | TTTTAATAAGCTCTTTAGAA+TGG | - | chr6_1:26802520-26802539 | Msa0880280:intron | 20.0% |
| !! | ATAACCACTTATATGATAAA+TGG | - | chr6_1:26802596-26802615 | Msa0880280:intron | 20.0% |
| !! | ATAACCATTTATCATATAAG+TGG | + | chr6_1:26802603-26802622 | None:intergenic | 20.0% |
| !!! | ATAAATACTTTGTTTATGTG+TGG | - | chr6_1:26802878-26802897 | Msa0880280:intron | 20.0% |
| !!! | TAAATACTTTGTTTATGTGT+GGG | - | chr6_1:26802879-26802898 | Msa0880280:intron | 20.0% |
| !! | GTTTGAGTATTTGTATATAT+AGG | - | chr6_1:26803159-26803178 | Msa0880280:intron | 20.0% |
| !! | AAAATAACTAAAATAGTCCA+GGG | - | chr6_1:26803345-26803364 | Msa0880280:intron | 20.0% |
| !! | TAAGGAACATAAATATTGAA+TGG | + | chr6_1:26803690-26803709 | None:intergenic | 20.0% |
| !!! | AGATTTTTTTATACTAGTGA+TGG | - | chr6_1:26803998-26804017 | Msa0880280:intron | 20.0% |
| !!! | AGATATTGAAATTGTTTTTG+AGG | - | chr6_1:26804047-26804066 | Msa0880280:intron | 20.0% |
| !! | ACATATAAACATAATCAGTT+TGG | - | chr6_1:26804377-26804396 | Msa0880280:CDS | 20.0% |
| !!! | TTTTTTGCACTTTGAACAAT+CGG | + | chr6_1:26802010-26802029 | None:intergenic | 25.0% |
| ! | AACAACGATAATAGTCAATT+GGG | + | chr6_1:26802060-26802079 | None:intergenic | 25.0% |
| !! | AAAGATCTTTTGCAAATCAA+AGG | - | chr6_1:26802196-26802215 | Msa0880280:intron | 25.0% |
| !!! | ATTTTGTTTTAGGGTCTATT+TGG | - | chr6_1:26802274-26802293 | Msa0880280:intron | 25.0% |
| !! | CTAAGTTGAAAAAAGCTTAT+TGG | + | chr6_1:26802368-26802387 | None:intergenic | 25.0% |
| !!! | TAAGCTTTTTTCAACTTAGT+AGG | - | chr6_1:26802369-26802388 | Msa0880280:CDS | 25.0% |
| !!! | AAGCTTTTTTCAACTTAGTA+GGG | - | chr6_1:26802370-26802389 | Msa0880280:CDS | 25.0% |
| !!! | ACTTATGTTGTTTTCATGTA+AGG | + | chr6_1:26802397-26802416 | None:intergenic | 25.0% |
| !! | AAACAACATAAGTTCTTTTC+AGG | - | chr6_1:26802404-26802423 | Msa0880280:CDS | 25.0% |
| !! | AACAACATAAGTTCTTTTCA+GGG | - | chr6_1:26802405-26802424 | Msa0880280:CDS | 25.0% |
| ! | GATTAACATAATCAATTGTG+AGG | - | chr6_1:26802452-26802471 | Msa0880280:CDS | 25.0% |
| !! | AAGTGCTTTATTAAGTTGTT+TGG | - | chr6_1:26802628-26802647 | Msa0880280:intron | 25.0% |
| ! | AATTACATGAATTGAGTGTT+TGG | + | chr6_1:26802654-26802673 | None:intergenic | 25.0% |
| !!! | TATATATTGCTGTTTCAATC+AGG | - | chr6_1:26802947-26802966 | Msa0880280:CDS | 25.0% |
| ! | TGTATATATAGGAGAATACA+AGG | - | chr6_1:26803170-26803189 | Msa0880280:intron | 25.0% |
| ! | TTGAGAAAATAAGACAGAAT+AGG | + | chr6_1:26803286-26803305 | None:intergenic | 25.0% |
| !!! | TTACAGTTCATTCAAGTTTT+TGG | - | chr6_1:26803317-26803336 | Msa0880280:intron | 25.0% |
| !!! | TACAGTTCATTCAAGTTTTT+GGG | - | chr6_1:26803318-26803337 | Msa0880280:intron | 25.0% |
| !!! | CTGGACTATTTTAGTTATTT+TGG | + | chr6_1:26803346-26803365 | None:intergenic | 25.0% |
| ! | CAAAATAACTAAAATAGTCC+AGG | - | chr6_1:26803344-26803363 | Msa0880280:intron | 25.0% |
| ! | AAATAACTAAAATAGTCCAG+GGG | - | chr6_1:26803346-26803365 | Msa0880280:intron | 25.0% |
| ! | AATTACTAGGCAATGTTATT+AGG | + | chr6_1:26803502-26803521 | None:intergenic | 25.0% |
| ! | ATAAAGCCATATTATAACCT+TGG | + | chr6_1:26803888-26803907 | None:intergenic | 25.0% |
| ! | TTGCTTAGGATAGTAAATTT+AGG | - | chr6_1:26804330-26804349 | Msa0880280:CDS | 25.0% |
| ! | TTGATTGTGTAATTGTAGTT+TGG | - | chr6_1:26804415-26804434 | Msa0880280:CDS | 25.0% |
| ! | TTACAATTACAACTAGCAAA+AGG | + | chr6_1:26804738-26804757 | None:intergenic | 25.0% |
| TGAAGATGAAGATTGAAAGA+GGG | + | chr6_1:26801709-26801728 | None:intergenic | 30.0% | |
| ATGAAGATGAAGATTGAAAG+AGG | + | chr6_1:26801710-26801729 | None:intergenic | 30.0% | |
| TTGCGATTTGTACAGTAATT+GGG | + | chr6_1:26801749-26801768 | None:intergenic | 30.0% | |
| ATTGCGATTTGTACAGTAAT+TGG | + | chr6_1:26801750-26801769 | None:intergenic | 30.0% | |
| !!! | CTTTTTTCGAAGAGGAATTA+CGG | + | chr6_1:26801799-26801818 | None:intergenic | 30.0% |
| AAGATCGAATCTTTAAACCA+TGG | - | chr6_1:26801816-26801835 | Msa0880280:three_prime_UTR | 30.0% | |
| ATTAACCTGAAGTTGTTCTA+CGG | + | chr6_1:26801914-26801933 | None:intergenic | 30.0% | |
| ! | TAGAACAACTTCAGGTTAAT+GGG | - | chr6_1:26801914-26801933 | Msa0880280:CDS | 30.0% |
| ! | TTTTTGCACTTTGAACAATC+GGG | + | chr6_1:26802009-26802028 | None:intergenic | 30.0% |
| CAACAACGATAATAGTCAAT+TGG | + | chr6_1:26802061-26802080 | None:intergenic | 30.0% | |
| CTGTGTTTAATTGTATTCTC+AGG | - | chr6_1:26802090-26802109 | Msa0880280:CDS | 30.0% | |
| TTAATTGTATTCTCAGGCAT+CGG | - | chr6_1:26802096-26802115 | Msa0880280:CDS | 30.0% | |
| ATTAAGAAGCTTAAAGATGC+AGG | - | chr6_1:26802136-26802155 | Msa0880280:intron | 30.0% | |
| AGTATAAGCAACAGATTCAA+CGG | + | chr6_1:26802170-26802189 | None:intergenic | 30.0% | |
| ATTTGCAAAAGATCTTTCCT+AGG | + | chr6_1:26802193-26802212 | None:intergenic | 30.0% | |
| !!! | TTTCAGGGTCCTTTATTTTT+AGG | - | chr6_1:26802420-26802439 | Msa0880280:CDS | 30.0% |
| CAAACAGAGCCTAAAAATAA+AGG | + | chr6_1:26802432-26802451 | None:intergenic | 30.0% | |
| !!! | CTTTATTTTTAGGCTCTGTT+TGG | - | chr6_1:26802430-26802449 | Msa0880280:CDS | 30.0% |
| AATAAGCTGAAAACAGCTTA+TGG | + | chr6_1:26802502-26802521 | None:intergenic | 30.0% | |
| TTAATACCCATCATTGATGA+AGG | - | chr6_1:26802687-26802706 | Msa0880280:intron | 30.0% | |
| TTTGTTTGTTTATTGACAGC+TGG | - | chr6_1:26802733-26802752 | Msa0880280:intron | 30.0% | |
| ATTGTAGAAGAGGAAATTCT+TGG | - | chr6_1:26803245-26803264 | Msa0880280:intron | 30.0% | |
| CAACGATGAATTGAATTACT+AGG | + | chr6_1:26803515-26803534 | None:intergenic | 30.0% | |
| AATGGACATTTAACAGAAAC+AGG | + | chr6_1:26803672-26803691 | None:intergenic | 30.0% | |
| TTTATGTTCCTTAATACGAC+AGG | - | chr6_1:26803697-26803716 | Msa0880280:intron | 30.0% | |
| TCTAAACAATACTGAGCAAA+AGG | + | chr6_1:26803854-26803873 | None:intergenic | 30.0% | |
| CAATTGCCAAGGTTATAATA+TGG | - | chr6_1:26803879-26803898 | Msa0880280:intron | 30.0% | |
| AAATCTTACAATACAACGCA+AGG | + | chr6_1:26803984-26804003 | None:intergenic | 30.0% | |
| !!! | TTTTGAGGCTTACATTTTGA+TGG | - | chr6_1:26804062-26804081 | Msa0880280:intron | 30.0% |
| AGCTGATTAAGATATTGCTT+AGG | - | chr6_1:26804316-26804335 | Msa0880280:intron | 30.0% | |
| ! | TAAAATCTGAAACCTTGCTT+CGG | + | chr6_1:26804629-26804648 | None:intergenic | 30.0% |
| ! | TCTGCAATAATGTTGAGTTT+TGG | - | chr6_1:26804788-26804807 | Msa0880280:five_prime_UTR | 30.0% |
| TGCGATTTGTACAGTAATTG+GGG | + | chr6_1:26801748-26801767 | None:intergenic | 35.0% | |
| !!! | GATTCGATCTTTTTTCGAAG+AGG | + | chr6_1:26801807-26801826 | None:intergenic | 35.0% |
| TTAACCTGAAGTTGTTCTAC+GGG | + | chr6_1:26801913-26801932 | None:intergenic | 35.0% | |
| ! | GTAGAACAACTTCAGGTTAA+TGG | - | chr6_1:26801913-26801932 | Msa0880280:CDS | 35.0% |
| !!! | AACCCTTTTTTCTCTGATGA+TGG | - | chr6_1:26802030-26802049 | Msa0880280:CDS | 35.0% |
| CTCCATCATCAGAGAAAAAA+GGG | + | chr6_1:26802035-26802054 | None:intergenic | 35.0% | |
| TAATTGTATTCTCAGGCATC+GGG | - | chr6_1:26802097-26802116 | Msa0880280:CDS | 35.0% | |
| ! | AATCTGTTGCTTATACTCCT+AGG | - | chr6_1:26802173-26802192 | Msa0880280:intron | 35.0% |
| TTCAATGATCTTGTCAACCT+TGG | + | chr6_1:26802233-26802252 | None:intergenic | 35.0% | |
| AGAAGACCTTCATCAATGAT+GGG | + | chr6_1:26802696-26802715 | None:intergenic | 35.0% | |
| TCGATTATTCAGATAACCAC+CGG | - | chr6_1:26802811-26802830 | Msa0880280:CDS | 35.0% | |
| AAGAGAGCTTGACAAGATAT+TGG | - | chr6_1:26802837-26802856 | Msa0880280:intron | 35.0% | |
| TTGACAAGATATTGGAAGGT+TGG | - | chr6_1:26802845-26802864 | Msa0880280:intron | 35.0% | |
| !! | ATATTGCTGTTTCAATCAGG+TGG | - | chr6_1:26802950-26802969 | Msa0880280:CDS | 35.0% |
| TCGAAATTCACCATACAACT+CGG | + | chr6_1:26802996-26803015 | None:intergenic | 35.0% | |
| TTGTATGGTGAATTTCGATC+TGG | - | chr6_1:26802998-26803017 | Msa0880280:CDS | 35.0% | |
| TGTATGGTGAATTTCGATCT+GGG | - | chr6_1:26802999-26803018 | Msa0880280:CDS | 35.0% | |
| AGGGAAACAAACAACATACT+TGG | + | chr6_1:26803060-26803079 | None:intergenic | 35.0% | |
| !! | CAAGAGGTATTGACACAAAA+GGG | + | chr6_1:26803079-26803098 | None:intergenic | 35.0% |
| !! | ACAAGAGGTATTGACACAAA+AGG | + | chr6_1:26803080-26803099 | None:intergenic | 35.0% |
| TAGTGACTCTATTGTAGAAG+AGG | - | chr6_1:26803235-26803254 | Msa0880280:intron | 35.0% | |
| ATGTCTATTTACATTTCCCC+TGG | + | chr6_1:26803365-26803384 | None:intergenic | 35.0% | |
| ATAACACTGATCATCAGTCA+CGG | - | chr6_1:26803772-26803791 | Msa0880280:CDS | 35.0% | |
| ! | AAACAAGGTATGACTTTTGC+TGG | - | chr6_1:26803826-26803845 | Msa0880280:intron | 35.0% |
| TGCTCAGTATTGTTTAGATC+TGG | - | chr6_1:26803856-26803875 | Msa0880280:intron | 35.0% | |
| AGCATTATTACCAGCTAAAC+AGG | - | chr6_1:26803929-26803948 | Msa0880280:intron | 35.0% | |
| ACAACGCAAGGCATAATAAA+TGG | + | chr6_1:26803972-26803991 | None:intergenic | 35.0% | |
| AGTGATGGTTGATCTGAATT+TGG | - | chr6_1:26804013-26804032 | Msa0880280:intron | 35.0% | |
| !! | CATTTTGATGGCTTATATGC+AGG | - | chr6_1:26804074-26804093 | Msa0880280:intron | 35.0% |
| ! | CTCTATAGGACAGATTTTTC+CGG | - | chr6_1:26804130-26804149 | Msa0880280:intron | 35.0% |
| ATTTCGCTAAATGCATTTGC+CGG | + | chr6_1:26804174-26804193 | None:intergenic | 35.0% | |
| TGTGCATTACAATAGTGACA+TGG | + | chr6_1:26804238-26804257 | None:intergenic | 35.0% | |
| ! | TGTGTAATTGTAGTTTGGTG+TGG | - | chr6_1:26804420-26804439 | Msa0880280:CDS | 35.0% |
| ! | CAAGTAGTTTCACAAGTTGA+CGG | - | chr6_1:26804460-26804479 | Msa0880280:intron | 35.0% |
| ! | AGTGATTAGTTCTCCTTGTT+TGG | - | chr6_1:26804597-26804616 | Msa0880280:intron | 35.0% |
| ! | GAAGCAAGGTTTCAGATTTT+AGG | - | chr6_1:26804628-26804647 | Msa0880280:intron | 35.0% |
| GGTTCAGACAATGCTAAAAT+TGG | + | chr6_1:26804682-26804701 | None:intergenic | 35.0% | |
| !! | TGATAACGATAGTTTGTTGC+AGG | - | chr6_1:26804829-26804848 | Msa0880280:five_prime_UTR | 35.0% |
| !! | GATAACGATAGTTTGTTGCA+GGG | - | chr6_1:26804830-26804849 | Msa0880280:five_prime_UTR | 35.0% |
| AGGGATTCAAAATGCGTCAA+AGG | + | chr6_1:26801690-26801709 | None:intergenic | 40.0% | |
| GCGATTTGTACAGTAATTGG+GGG | + | chr6_1:26801747-26801766 | None:intergenic | 40.0% | |
| GTTGAATCTCTTCGGTTTCT+TGG | + | chr6_1:26801879-26801898 | None:intergenic | 40.0% | |
| GAAACCGAAGAGATTCAACA+CGG | - | chr6_1:26801880-26801899 | Msa0880280:exon | 40.0% | |
| TGAAGTTGTTCTACGGGTAA+AGG | + | chr6_1:26801907-26801926 | None:intergenic | 40.0% | |
| TTTACCCGTAGAACAACTTC+AGG | - | chr6_1:26801906-26801925 | Msa0880280:CDS | 40.0% | |
| CCTCCATCATCAGAGAAAAA+AGG | + | chr6_1:26802036-26802055 | None:intergenic | 40.0% | |
| !!! | CCTTTTTTCTCTGATGATGG+AGG | - | chr6_1:26802033-26802052 | Msa0880280:CDS | 40.0% |
| GTTGACAAGATCATTGAAGC+AGG | - | chr6_1:26802235-26802254 | Msa0880280:intron | 40.0% | |
| CAGAAGACCTTCATCAATGA+TGG | + | chr6_1:26802697-26802716 | None:intergenic | 40.0% | |
| TTTATTGACAGCTGGTAAGC+TGG | - | chr6_1:26802741-26802760 | Msa0880280:intron | 40.0% | |
| CGATTATTCAGATAACCACC+GGG | - | chr6_1:26802812-26802831 | Msa0880280:CDS | 40.0% | |
| GAGCTTGACAAGATATTGGA+AGG | - | chr6_1:26802841-26802860 | Msa0880280:intron | 40.0% | |
| TCAATCAGGTGGAATTGAGA+CGG | - | chr6_1:26802961-26802980 | Msa0880280:CDS | 40.0% | |
| !! | GTAGAAAGCACTAGAACAAG+AGG | + | chr6_1:26803095-26803114 | None:intergenic | 40.0% |
| TTCTAGTGCTTTCTACCAAG+TGG | - | chr6_1:26803099-26803118 | Msa0880280:intron | 40.0% | |
| !! | CTACCAAGTGGTAACTTGTT+AGG | - | chr6_1:26803111-26803130 | Msa0880280:intron | 40.0% |
| TCTCCTAACAAGTTACCACT+TGG | + | chr6_1:26803117-26803136 | None:intergenic | 40.0% | |
| GTAGAAGAGGAAATTCTTGG+AGG | - | chr6_1:26803248-26803267 | Msa0880280:intron | 40.0% | |
| TTGTAGTTGCCACTAGATCA+AGG | - | chr6_1:26803538-26803557 | Msa0880280:CDS | 40.0% | |
| GACTCTTACAGATAGCAGAT+AGG | - | chr6_1:26803617-26803636 | Msa0880280:intron | 40.0% | |
| GTTCCTTAATACGACAGGTT+TGG | - | chr6_1:26803702-26803721 | Msa0880280:intron | 40.0% | |
| AGTCCAAACCTGTCGTATTA+AGG | + | chr6_1:26803708-26803727 | None:intergenic | 40.0% | |
| ACTGAATGGTCCTGATGTAT+TGG | - | chr6_1:26803725-26803744 | Msa0880280:CDS | 40.0% | |
| ! | GCGACATTTTCCAATACATC+AGG | + | chr6_1:26803738-26803757 | None:intergenic | 40.0% |
| ACTTGAAGCAGCTTCAATGA+TGG | - | chr6_1:26803800-26803819 | Msa0880280:CDS | 40.0% | |
| !! | CTTCAATGATGGTGGAAACA+AGG | - | chr6_1:26803811-26803830 | Msa0880280:intron | 40.0% |
| TTTAGATCTGGCAATTGCCA+AGG | - | chr6_1:26803868-26803887 | Msa0880280:intron | 40.0% | |
| TATTACCAGCTAAACAGGCT+AGG | - | chr6_1:26803934-26803953 | Msa0880280:intron | 40.0% | |
| TAAAACCTAGCCTGTTTAGC+TGG | + | chr6_1:26803942-26803961 | None:intergenic | 40.0% | |
| TTTCGCTAAATGCATTTGCC+GGG | + | chr6_1:26804173-26804192 | None:intergenic | 40.0% | |
| ! | CTAATTTCTGAAGGCTTCTC+AGG | + | chr6_1:26804198-26804217 | None:intergenic | 40.0% |
| CCTCATCTGCTAATTTCTGA+AGG | + | chr6_1:26804207-26804226 | None:intergenic | 40.0% | |
| CCTTCAGAAATTAGCAGATG+AGG | - | chr6_1:26804204-26804223 | Msa0880280:intron | 40.0% | |
| CGTCAACTTGTGAAACTACT+TGG | + | chr6_1:26804462-26804481 | None:intergenic | 40.0% | |
| ! | AGGTTTCAGATTTTAGGCGA+AGG | - | chr6_1:26804634-26804653 | Msa0880280:intron | 40.0% |
| ! | GGTTTCAGATTTTAGGCGAA+GGG | - | chr6_1:26804635-26804654 | Msa0880280:intron | 40.0% |
| ! | GTTTCAGATTTTAGGCGAAG+GGG | - | chr6_1:26804636-26804655 | Msa0880280:intron | 40.0% |
| AGGACCGTGTTGAATCTCTT+CGG | + | chr6_1:26801887-26801906 | None:intergenic | 45.0% | |
| !! | CAAAGGTATCAGTGATGCCA+AGG | - | chr6_1:26802213-26802232 | Msa0880280:intron | 45.0% |
| ATGAAGGTCTTCTGAGTCTG+TGG | - | chr6_1:26802703-26802722 | Msa0880280:intron | 45.0% | |
| CTAGCGCTAGTAAAACCCAT+AGG | + | chr6_1:26802769-26802788 | None:intergenic | 45.0% | |
| CAATCAGGTGGAATTGAGAC+GGG | - | chr6_1:26802962-26802981 | Msa0880280:CDS | 45.0% | |
| GGTTCTATCACCGAGTTGTA+TGG | - | chr6_1:26802983-26803002 | Msa0880280:CDS | 45.0% | |
| TAGTTGCCACTAGATCAAGG+AGG | - | chr6_1:26803541-26803560 | Msa0880280:CDS | 45.0% | |
| AGCTATGTACATAGATGCCG+AGG | - | chr6_1:26803576-26803595 | Msa0880280:CDS | 45.0% | |
| GCTATGTACATAGATGCCGA+GGG | - | chr6_1:26803577-26803596 | Msa0880280:CDS | 45.0% | |
| TAGATGCCGAGGGAACATTT+AGG | - | chr6_1:26803587-26803606 | Msa0880280:intron | 45.0% | |
| TACGACAGGTTTGGACTGAA+TGG | - | chr6_1:26803711-26803730 | Msa0880280:intron | 45.0% | |
| TGAAGCAGCTTCAATGATGG+TGG | - | chr6_1:26803803-26803822 | Msa0880280:CDS | 45.0% | |
| ! | ACAGTGCTACTGCTCTCTAT+AGG | - | chr6_1:26804116-26804135 | Msa0880280:intron | 45.0% |
| ! | AGGACAGATTTTTCCGGAAG+AGG | - | chr6_1:26804136-26804155 | Msa0880280:intron | 45.0% |
| ! | GGACAGATTTTTCCGGAAGA+GGG | - | chr6_1:26804137-26804156 | Msa0880280:intron | 45.0% |
| ! | GACAGATTTTTCCGGAAGAG+GGG | - | chr6_1:26804138-26804157 | Msa0880280:intron | 45.0% |
| AATGTTGCCACCAATTGGCT+TGG | + | chr6_1:26804512-26804531 | None:intergenic | 45.0% | |
| ! | GCCAATTGGTGGCAACATTA+TGG | - | chr6_1:26804513-26804532 | Msa0880280:intron | 45.0% |
| GCCATAATGTTGCCACCAAT+TGG | + | chr6_1:26804517-26804536 | None:intergenic | 45.0% | |
| ! | ACAAGGTTAGCTCTCAGGAA+AGG | - | chr6_1:26804550-26804569 | Msa0880280:intron | 45.0% |
| ! | TTAGCTCTCAGGAAAGGAAG+AGG | - | chr6_1:26804556-26804575 | Msa0880280:intron | 45.0% |
| TAGCTCTCAGGAAAGGAAGA+GGG | - | chr6_1:26804557-26804576 | Msa0880280:intron | 45.0% | |
| ! | GATTTTAGGCGAAGGGGTTT+CGG | - | chr6_1:26804642-26804661 | Msa0880280:intron | 45.0% |
| CTCAAGTCGTTGTTGCTCCA+TGG | + | chr6_1:26801836-26801855 | None:intergenic | 50.0% | |
| !! | TTCTCAGGCATCGGGTATAG+CGG | - | chr6_1:26802105-26802124 | Msa0880280:CDS | 50.0% |
| CTTGTCAAGCTCTCTTGACC+CGG | + | chr6_1:26802833-26802852 | None:intergenic | 50.0% | |
| TTGCCACTAGATCAAGGAGG+AGG | - | chr6_1:26803544-26803563 | Msa0880280:CDS | 50.0% | |
| TCACCTCCTCCTTGATCTAG+TGG | + | chr6_1:26803550-26803569 | None:intergenic | 50.0% | |
| ACTAGATCAAGGAGGAGGTG+AGG | - | chr6_1:26803549-26803568 | Msa0880280:CDS | 50.0% | |
| CTAGATCAAGGAGGAGGTGA+GGG | - | chr6_1:26803550-26803569 | Msa0880280:CDS | 50.0% | |
| CTGAGGCCTAAATGTTCCCT+CGG | + | chr6_1:26803596-26803615 | None:intergenic | 50.0% | |
| GCTATCTGTAAGAGTCGCTG+AGG | + | chr6_1:26803613-26803632 | None:intergenic | 50.0% | |
| GACGGTTCTGCAATGTTTGC+TGG | - | chr6_1:26804478-26804497 | Msa0880280:intron | 50.0% | |
| !! | CCACCAATTGGCTTGGTTTG+GGG | + | chr6_1:26804505-26804524 | None:intergenic | 50.0% |
| !! | GCCACCAATTGGCTTGGTTT+GGG | + | chr6_1:26804506-26804525 | None:intergenic | 50.0% |
| !! | TGCCACCAATTGGCTTGGTT+TGG | + | chr6_1:26804507-26804526 | None:intergenic | 50.0% |
| AGCTCTCAGGAAAGGAAGAG+GGG | - | chr6_1:26804558-26804577 | Msa0880280:intron | 50.0% | |
| AGCTGGTAAGCTGGTGCCTA+TGG | - | chr6_1:26802750-26802769 | Msa0880280:CDS | 55.0% | |
| GCTGGTAAGCTGGTGCCTAT+GGG | - | chr6_1:26802751-26802770 | Msa0880280:CDS | 55.0% | |
| GGACCCCAAACCAAGCCAAT+TGG | - | chr6_1:26804499-26804518 | Msa0880280:intron | 55.0% | |
| CCCCAAACCAAGCCAATTGG+TGG | - | chr6_1:26804502-26804521 | Msa0880280:intron | 55.0% | |
| TGGCTCATGCAACCACGACA+AGG | - | chr6_1:26804533-26804552 | Msa0880280:intron | 55.0% | |
| CCTGAGAGCTAACCTTGTCG+TGG | + | chr6_1:26804548-26804567 | None:intergenic | 55.0% | |
| ! | CCACGACAAGGTTAGCTCTC+AGG | - | chr6_1:26804545-26804564 | Msa0880280:intron | 55.0% |
| GCTTCGGCTTCAGCCAAACA+AGG | + | chr6_1:26804613-26804632 | None:intergenic | 55.0% | |
| GTTTGGCTGAAGCCGAAGCA+AGG | - | chr6_1:26804614-26804633 | Msa0880280:intron | 55.0% | |
| GTCAAGCTCTCTTGACCCGG+TGG | + | chr6_1:26802830-26802849 | None:intergenic | 60.0% | |
| GGCTGAAAGCTCCCCTCTTC+CGG | + | chr6_1:26804152-26804171 | None:intergenic | 60.0% | |
| GAAGAGGGGAGCTTTCAGCC+CGG | - | chr6_1:26804152-26804171 | Msa0880280:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 26801671 | 26804903 | 26801671 | ID=Msa0880280;Name=Msa0880280 |
| chr6_1 | mRNA | 26801671 | 26804903 | 26801671 | ID=Msa0880280-mRNA-1;Parent=Msa0880280;Name=Msa0880280-mRNA-1;_AED=0.03;_eAED=0.03;_QI=164|1|1|1|1|1|8|225|341 |
| chr6_1 | exon | 26801671 | 26802141 | 26801671 | ID=Msa0880280-mRNA-1:exon:6555;Parent=Msa0880280-mRNA-1 |
| chr6_1 | exon | 26802349 | 26802478 | 26802349 | ID=Msa0880280-mRNA-1:exon:6554;Parent=Msa0880280-mRNA-1 |
| chr6_1 | exon | 26802742 | 26802855 | 26802742 | ID=Msa0880280-mRNA-1:exon:6553;Parent=Msa0880280-mRNA-1 |
| chr6_1 | exon | 26802936 | 26803030 | 26802936 | ID=Msa0880280-mRNA-1:exon:6552;Parent=Msa0880280-mRNA-1 |
| chr6_1 | exon | 26803514 | 26803605 | 26803514 | ID=Msa0880280-mRNA-1:exon:6551;Parent=Msa0880280-mRNA-1 |
| chr6_1 | exon | 26803712 | 26803822 | 26803712 | ID=Msa0880280-mRNA-1:exon:6550;Parent=Msa0880280-mRNA-1 |
| chr6_1 | exon | 26804318 | 26804462 | 26804318 | ID=Msa0880280-mRNA-1:exon:6549;Parent=Msa0880280-mRNA-1 |
| chr6_1 | exon | 26804647 | 26804903 | 26804647 | ID=Msa0880280-mRNA-1:exon:6548;Parent=Msa0880280-mRNA-1 |
| chr6_1 | five_prime_UTR | 26804740 | 26804903 | 26804740 | ID=Msa0880280-mRNA-1:five_prime_utr;Parent=Msa0880280-mRNA-1 |
| chr6_1 | CDS | 26804647 | 26804739 | 26804647 | ID=Msa0880280-mRNA-1:cds;Parent=Msa0880280-mRNA-1 |
| chr6_1 | CDS | 26804318 | 26804462 | 26804318 | ID=Msa0880280-mRNA-1:cds;Parent=Msa0880280-mRNA-1 |
| chr6_1 | CDS | 26803712 | 26803822 | 26803712 | ID=Msa0880280-mRNA-1:cds;Parent=Msa0880280-mRNA-1 |
| chr6_1 | CDS | 26803514 | 26803605 | 26803514 | ID=Msa0880280-mRNA-1:cds;Parent=Msa0880280-mRNA-1 |
| chr6_1 | CDS | 26802936 | 26803030 | 26802936 | ID=Msa0880280-mRNA-1:cds;Parent=Msa0880280-mRNA-1 |
| chr6_1 | CDS | 26802742 | 26802855 | 26802742 | ID=Msa0880280-mRNA-1:cds;Parent=Msa0880280-mRNA-1 |
| chr6_1 | CDS | 26802349 | 26802478 | 26802349 | ID=Msa0880280-mRNA-1:cds;Parent=Msa0880280-mRNA-1 |
| chr6_1 | CDS | 26801896 | 26802141 | 26801896 | ID=Msa0880280-mRNA-1:cds;Parent=Msa0880280-mRNA-1 |
| chr6_1 | three_prime_UTR | 26801671 | 26801895 | 26801671 | ID=Msa0880280-mRNA-1:three_prime_utr;Parent=Msa0880280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
