Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333650 | XP_003609937.1 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 695 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333650 | sp|Q40134|RAD51_SOLLC | 88.304 | 342 | 39 | 1 | 1 | 341 | 1 | 342 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333650 | G7JS36 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 695 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030070 | Msa1333650 | 0.811441 | 6.990481e-51 | -8.615850e-47 |
| Msa0032230 | Msa1333650 | 0.860409 | 2.108167e-63 | -8.615850e-47 |
| Msa0093210 | Msa1333650 | 0.986893 | 2.460466e-168 | -8.615850e-47 |
| Msa0100600 | Msa1333650 | 0.814227 | 1.714990e-51 | -8.615850e-47 |
| Msa0100890 | Msa1333650 | 0.800324 | 1.520193e-48 | -8.615850e-47 |
| Msa0618840 | Msa1333650 | 0.808576 | 2.893686e-50 | -8.615850e-47 |
| Msa0618990 | Msa1333650 | 0.825696 | 4.072308e-54 | -8.615850e-47 |
| Msa0621320 | Msa1333650 | 0.801057 | 1.077355e-48 | -8.615850e-47 |
| Msa0625620 | Msa1333650 | 0.820221 | 7.693437e-53 | -8.615850e-47 |
| Msa0640800 | Msa1333650 | 0.827142 | 1.841737e-54 | -8.615850e-47 |
| Msa0647440 | Msa1333650 | 0.800560 | 1.360820e-48 | -8.615850e-47 |
| Msa0705180 | Msa1333650 | 0.807503 | 4.896653e-50 | -8.615850e-47 |
| Msa0707260 | Msa1333650 | 0.814856 | 1.244893e-51 | -8.615850e-47 |
| Msa0708980 | Msa1333650 | 0.810271 | 1.252254e-50 | -8.615850e-47 |
| Msa0737020 | Msa1333650 | 0.839548 | 1.483220e-57 | -8.615850e-47 |
| Msa0776640 | Msa1333650 | 0.801591 | 8.377582e-49 | -8.615850e-47 |
| Msa0825920 | Msa1333650 | 0.803632 | 3.176909e-49 | -8.615850e-47 |
| Msa0125590 | Msa1333650 | 0.833307 | 5.750817e-56 | -8.615850e-47 |
| Msa0127270 | Msa1333650 | 0.846681 | 1.864172e-59 | -8.615850e-47 |
| Msa0129960 | Msa1333650 | 0.819102 | 1.385059e-52 | -8.615850e-47 |
| Msa0170070 | Msa1333650 | 0.802722 | 4.901951e-49 | -8.615850e-47 |
| Msa0172510 | Msa1333650 | 0.828319 | 9.602415e-55 | -8.615850e-47 |
| Msa0180100 | Msa1333650 | -0.805483 | 1.305983e-49 | -8.615850e-47 |
| Msa0192050 | Msa1333650 | 0.806255 | 8.990602e-50 | -8.615850e-47 |
| Msa0194630 | Msa1333650 | 0.805391 | 1.365714e-49 | -8.615850e-47 |
| Msa0236820 | Msa1333650 | 0.819691 | 1.017021e-52 | -8.615850e-47 |
| Msa1266620 | Msa1333650 | 0.989103 | 1.048033e-176 | -8.615850e-47 |
| Msa1267150 | Msa1333650 | 0.958618 | 1.509679e-116 | -8.615850e-47 |
| Msa1277110 | Msa1333650 | 0.802955 | 4.387529e-49 | -8.615850e-47 |
| Msa1293610 | Msa1333650 | 0.812798 | 3.536986e-51 | -8.615850e-47 |
| Msa1294280 | Msa1333650 | 0.815849 | 7.487677e-52 | -8.615850e-47 |
| Msa1333650 | Msa1339230 | 0.819151 | 1.350159e-52 | -8.615850e-47 |
| Msa1333650 | Msa1387500 | 0.813234 | 2.837367e-51 | -8.615850e-47 |
| Msa1333650 | Msa1393560 | 0.808762 | 2.640898e-50 | -8.615850e-47 |
| Msa1333650 | Msa1399190 | 0.823067 | 1.691107e-53 | -8.615850e-47 |
| Msa1333650 | Msa1413020 | 0.800427 | 1.448432e-48 | -8.615850e-47 |
| Msa1333650 | Msa1426320 | 0.819348 | 1.217406e-52 | -8.615850e-47 |
| Msa1333650 | Msa1428690 | 0.957944 | 7.946332e-116 | -8.615850e-47 |
| Msa1333650 | Msa1435100 | 0.827232 | 1.753157e-54 | -8.615850e-47 |
| Msa1333650 | Msa1439730 | 0.833174 | 6.206290e-56 | -8.615850e-47 |
| Msa1333650 | Msa1444930 | 0.962491 | 6.109471e-121 | -8.615850e-47 |
| Msa1333650 | Msa1461260 | 0.832051 | 1.178643e-55 | -8.615850e-47 |
| Msa0378270 | Msa1333650 | 0.809265 | 2.061184e-50 | -8.615850e-47 |
| Msa0380490 | Msa1333650 | 0.805749 | 1.148503e-49 | -8.615850e-47 |
| Msa0382230 | Msa1333650 | 0.832443 | 9.427503e-56 | -8.615850e-47 |
| Msa0388620 | Msa1333650 | 0.805265 | 1.450839e-49 | -8.615850e-47 |
| Msa0416210 | Msa1333650 | 0.813734 | 2.202636e-51 | -8.615850e-47 |
| Msa0433630 | Msa1333650 | 0.826070 | 3.318280e-54 | -8.615850e-47 |
| Msa0456670 | Msa1333650 | 0.833967 | 3.934175e-56 | -8.615850e-47 |
| Msa0468620 | Msa1333650 | 0.823914 | 1.071487e-53 | -8.615850e-47 |
| Msa1000780 | Msa1333650 | 0.841798 | 3.818620e-58 | -8.615850e-47 |
| Msa1041370 | Msa1333650 | 0.800815 | 1.207245e-48 | -8.615850e-47 |
| Msa0272540 | Msa1333650 | 0.800089 | 1.697577e-48 | -8.615850e-47 |
| Msa1201170 | Msa1333650 | 0.828534 | 8.523120e-55 | -8.615850e-47 |
| Msa1219640 | Msa1333650 | 0.984846 | 9.174750e-162 | -8.615850e-47 |
| Msa0514020 | Msa1333650 | 0.801591 | 8.377106e-49 | -8.615850e-47 |
| Msa0514500 | Msa1333650 | 0.823093 | 1.667084e-53 | -8.615850e-47 |
| Msa0520680 | Msa1333650 | 0.823910 | 1.073771e-53 | -8.615850e-47 |
| Msa0521510 | Msa1333650 | 0.827052 | 1.935399e-54 | -8.615850e-47 |
| Msa0544410 | Msa1333650 | 0.821565 | 3.773400e-53 | -8.615850e-47 |
| Msa0544430 | Msa1333650 | 0.824169 | 9.336069e-54 | -8.615850e-47 |
| Msa0572830 | Msa1333650 | 0.813691 | 2.252283e-51 | -8.615850e-47 |
| Msa0584530 | Msa1333650 | 0.802495 | 5.461086e-49 | -8.615850e-47 |
| Msa0586200 | Msa1333650 | 0.805170 | 1.519194e-49 | -8.615850e-47 |
| Msa0846900 | Msa1333650 | 0.818898 | 1.541694e-52 | -8.615850e-47 |
| Msa0865420 | Msa1333650 | 0.803154 | 3.992295e-49 | -8.615850e-47 |
| Msa0880280 | Msa1333650 | 0.987402 | 3.971364e-170 | -8.615850e-47 |
| Msa0926310 | Msa1333650 | 0.825873 | 3.696396e-54 | -8.615850e-47 |
| Msa0945900 | Msa1333650 | 0.806657 | 7.395351e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333650 | MtrunA17_Chr4g0069901 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 695 |
| Msa1333650 | MtrunA17_Chr1g0204601 | 54.817 | 301 | 135 | 1 | 27 | 327 | 32 | 331 | 2.23e-112 | 330 |
| Msa1333650 | MtrunA17_Chr4g0011421 | 30.723 | 332 | 185 | 9 | 42 | 338 | 15 | 336 | 3.56e-30 | 117 |
| Msa1333650 | MtrunA17_Chr4g0062441 | 33.463 | 257 | 140 | 7 | 104 | 338 | 11 | 258 | 1.14e-29 | 114 |
| Msa1333650 | MtrunA17_Chr5g0443271 | 40.741 | 135 | 58 | 2 | 193 | 327 | 17 | 129 | 9.95e-23 | 92.8 |
| Msa1333650 | MtrunA17_Chr2g0305351 | 28.938 | 273 | 166 | 7 | 93 | 340 | 11 | 280 | 7.81e-21 | 90.9 |
| Msa1333650 | MtrunA17_Chr2g0325901 | 29.119 | 261 | 151 | 7 | 103 | 336 | 101 | 354 | 1.78e-19 | 88.6 |
| Msa1333650 | MtrunA17_Chr4g0030771 | 27.386 | 241 | 143 | 8 | 104 | 327 | 89 | 314 | 1.69e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333650 | AT5G20850.1 | 87.683 | 341 | 40 | 1 | 1 | 341 | 4 | 342 | 0.0 | 624 |
| Msa1333650 | AT5G20850.2 | 88.040 | 301 | 34 | 1 | 1 | 301 | 4 | 302 | 0.0 | 557 |
| Msa1333650 | AT3G22880.1 | 53.651 | 315 | 145 | 1 | 27 | 341 | 31 | 344 | 3.70e-116 | 340 |
| Msa1333650 | AT3G22880.2 | 53.821 | 301 | 138 | 1 | 27 | 327 | 31 | 330 | 6.51e-111 | 326 |
| Msa1333650 | AT2G45280.1 | 31.000 | 300 | 169 | 7 | 42 | 312 | 36 | 326 | 1.23e-25 | 105 |
| Msa1333650 | AT2G45280.2 | 32.661 | 248 | 136 | 6 | 87 | 312 | 112 | 350 | 3.53e-25 | 105 |
| Msa1333650 | AT5G57450.2 | 27.465 | 284 | 160 | 6 | 103 | 340 | 20 | 303 | 4.65e-24 | 100 |
| Msa1333650 | AT5G57450.1 | 27.465 | 284 | 160 | 6 | 103 | 340 | 20 | 303 | 4.65e-24 | 100 |
| Msa1333650 | AT2G28560.3 | 29.057 | 265 | 156 | 7 | 103 | 341 | 51 | 309 | 2.38e-20 | 90.9 |
| Msa1333650 | AT2G28560.1 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 3.79e-20 | 90.5 |
| Msa1333650 | AT2G28560.6 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 4.18e-20 | 90.5 |
| Msa1333650 | AT2G28560.5 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 4.18e-20 | 90.5 |
| Msa1333650 | AT2G28560.2 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 4.18e-20 | 90.5 |
| Msa1333650 | AT2G28560.4 | 30.556 | 180 | 113 | 4 | 103 | 274 | 51 | 226 | 1.12e-15 | 75.9 |
| Msa1333650 | AT1G07745.1 | 25.941 | 239 | 154 | 6 | 76 | 306 | 64 | 287 | 1.06e-12 | 68.6 |
| Msa1333650 | AT1G07745.2 | 25.941 | 239 | 154 | 6 | 76 | 306 | 46 | 269 | 1.49e-12 | 67.8 |
Find 96 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGAATCTCTTCGGTTTCT+TGG | 0.161205 | 8_4:+53860597 | None:intergenic |
| GCCACCAATTGGCTTGGTTT+GGG | 0.257944 | 8_4:+53857965 | None:intergenic |
| ATTGCGATTTGTACAGTAAT+TGG | 0.263852 | 8_4:+53860726 | None:intergenic |
| GCCAATTGGTGGCAACATTA+TGG | 0.293831 | 8_4:-53857955 | Msa1333650:CDS |
| GGCTGAAAGCTCCCCTCTTC+CGG | 0.313600 | 8_4:+53858319 | None:intergenic |
| AGTGATTAGTTCTCCTTGTT+TGG | 0.313602 | 8_4:-53857871 | Msa1333650:CDS |
| TGCCACCAATTGGCTTGGTT+TGG | 0.332160 | 8_4:+53857964 | None:intergenic |
| TTGCGATTTGTACAGTAATT+GGG | 0.340715 | 8_4:+53860727 | None:intergenic |
| AGCTGGTAAGCTGGTGCCTA+TGG | 0.346402 | 8_4:-53859718 | Msa1333650:CDS |
| CGTCAACTTGTGAAACTACT+TGG | 0.353913 | 8_4:+53858009 | None:intergenic |
| TGATAACGATAGTTTGTTGC+AGG | 0.356824 | 8_4:-53857640 | Msa1333650:three_prime_UTR |
| GACGGTTCTGCAATGTTTGC+TGG | 0.369464 | 8_4:-53857990 | Msa1333650:CDS |
| TCTGCAATAATGTTGAGTTT+TGG | 0.369673 | 8_4:-53857681 | Msa1333650:three_prime_UTR |
| GGTTCAGACAATGCTAAAAT+TGG | 0.370907 | 8_4:+53857789 | None:intergenic |
| CTAATTTCTGAAGGCTTCTC+AGG | 0.371141 | 8_4:+53858273 | None:intergenic |
| ATTTCGCTAAATGCATTTGC+CGG | 0.371203 | 8_4:+53858297 | None:intergenic |
| AAGAGAGCTTGACAAGATAT+TGG | 0.386237 | 8_4:-53859631 | Msa1333650:CDS |
| TTTACCCGTAGAACAACTTC+AGG | 0.397476 | 8_4:-53860567 | Msa1333650:intron |
| ATGAAGATGAAGATTGAAAG+AGG | 0.407291 | 8_4:+53860766 | None:intergenic |
| GCCATAATGTTGCCACCAAT+TGG | 0.411385 | 8_4:+53857954 | None:intergenic |
| CTCAAGTCGTTGTTGCTCCA+TGG | 0.416061 | 8_4:+53860640 | None:intergenic |
| TTGTATGGTGAATTTCGATC+TGG | 0.418493 | 8_4:-53859470 | Msa1333650:CDS |
| TAATTGTATTCTCAGGCATC+GGG | 0.449868 | 8_4:-53860375 | Msa1333650:intron |
| TACGACAGGTTTGGACTGAA+TGG | 0.457584 | 8_4:-53858757 | Msa1333650:intron |
| CCACCAATTGGCTTGGTTTG+GGG | 0.463690 | 8_4:+53857966 | None:intergenic |
| TTACAATTACAACTAGCAAA+AGG | 0.465295 | 8_4:+53857734 | None:intergenic |
| CAATCAGGTGGAATTGAGAC+GGG | 0.472160 | 8_4:-53859506 | Msa1333650:intron |
| ACTGAATGGTCCTGATGTAT+TGG | 0.472714 | 8_4:-53858743 | Msa1333650:CDS |
| AATCTGTTGCTTATACTCCT+AGG | 0.488123 | 8_4:-53860299 | Msa1333650:CDS |
| GGTTCTATCACCGAGTTGTA+TGG | 0.488506 | 8_4:-53859485 | Msa1333650:CDS |
| ACAGTGCTACTGCTCTCTAT+AGG | 0.490455 | 8_4:-53858352 | Msa1333650:CDS |
| GGACCCCAAACCAAGCCAAT+TGG | 0.494568 | 8_4:-53857969 | Msa1333650:CDS |
| CCACGACAAGGTTAGCTCTC+AGG | 0.496287 | 8_4:-53857923 | Msa1333650:CDS |
| ATTAAGAAGCTTAAAGATGC+AGG | 0.498423 | 8_4:-53860336 | Msa1333650:CDS |
| TAAAATCTGAAACCTTGCTT+CGG | 0.499109 | 8_4:+53857842 | None:intergenic |
| TTTATTGACAGCTGGTAAGC+TGG | 0.500060 | 8_4:-53859727 | Msa1333650:intron |
| AATGTTGCCACCAATTGGCT+TGG | 0.501653 | 8_4:+53857959 | None:intergenic |
| ATTTGCAAAAGATCTTTCCT+AGG | 0.502674 | 8_4:+53860282 | None:intergenic |
| TTCAATGATCTTGTCAACCT+TGG | 0.504239 | 8_4:+53860242 | None:intergenic |
| TGAAGATGAAGATTGAAAGA+GGG | 0.507736 | 8_4:+53860767 | None:intergenic |
| TGAAGTTGTTCTACGGGTAA+AGG | 0.508750 | 8_4:+53860569 | None:intergenic |
| AGGACCGTGTTGAATCTCTT+CGG | 0.510828 | 8_4:+53860589 | None:intergenic |
| CCTCATCTGCTAATTTCTGA+AGG | 0.511857 | 8_4:+53858264 | None:intergenic |
| GCTGGTAAGCTGGTGCCTAT+GGG | 0.516629 | 8_4:-53859717 | Msa1333650:CDS |
| CAAGTAGTTTCACAAGTTGA+CGG | 0.519262 | 8_4:-53858008 | Msa1333650:CDS |
| TAGATGCCGAGGGAACATTT+AGG | 0.520366 | 8_4:-53858881 | Msa1333650:CDS |
| TTAACCTGAAGTTGTTCTAC+GGG | 0.520860 | 8_4:+53860563 | None:intergenic |
| CCATTACAGAGAGGGGAAAG+AGG | 0.522157 | 8_4:+53857578 | None:intergenic |
| TGCGATTTGTACAGTAATTG+GGG | 0.523400 | 8_4:+53860728 | None:intergenic |
| ACTTGAAGCAGCTTCAATGA+TGG | 0.525271 | 8_4:-53858668 | Msa1333650:CDS |
| ATTAACCTGAAGTTGTTCTA+CGG | 0.528625 | 8_4:+53860562 | None:intergenic |
| TTTCGCTAAATGCATTTGCC+GGG | 0.529004 | 8_4:+53858298 | None:intergenic |
| CCCCAAACCAAGCCAATTGG+TGG | 0.539489 | 8_4:-53857966 | Msa1333650:CDS |
| CTTGTCAAGCTCTCTTGACC+CGG | 0.542171 | 8_4:+53859638 | None:intergenic |
| CTTCAATGATGGTGGAAACA+AGG | 0.543376 | 8_4:-53858657 | Msa1333650:intron |
| TTAGCTCTCAGGAAAGGAAG+AGG | 0.549474 | 8_4:-53857912 | Msa1333650:CDS |
| TTGTAGTTGCCACTAGATCA+AGG | 0.550547 | 8_4:-53858930 | Msa1333650:intron |
| TCAATCAGGTGGAATTGAGA+CGG | 0.551223 | 8_4:-53859507 | Msa1333650:intron |
| TCGATTATTCAGATAACCAC+CGG | 0.554130 | 8_4:-53859657 | Msa1333650:CDS |
| GCTTCGGCTTCAGCCAAACA+AGG | 0.555538 | 8_4:+53857858 | None:intergenic |
| TGTGTAATTGTAGTTTGGTG+TGG | 0.558015 | 8_4:-53858048 | Msa1333650:intron |
| CAAAGGTATCAGTGATGCCA+AGG | 0.558029 | 8_4:-53860259 | Msa1333650:CDS |
| TCACCTCCTCCTTGATCTAG+TGG | 0.567569 | 8_4:+53858921 | None:intergenic |
| CTAGATCAAGGAGGAGGTGA+GGG | 0.569563 | 8_4:-53858918 | Msa1333650:CDS |
| CCTTCAGAAATTAGCAGATG+AGG | 0.570316 | 8_4:-53858264 | Msa1333650:intron |
| GAAGAGGGGAGCTTTCAGCC+CGG | 0.571563 | 8_4:-53858316 | Msa1333650:CDS |
| TAGCTCTCAGGAAAGGAAGA+GGG | 0.571645 | 8_4:-53857911 | Msa1333650:CDS |
| CCTGAGAGCTAACCTTGTCG+TGG | 0.573304 | 8_4:+53857923 | None:intergenic |
| GTTGACAAGATCATTGAAGC+AGG | 0.573756 | 8_4:-53860237 | Msa1333650:intron |
| GAGCTTGACAAGATATTGGA+AGG | 0.575499 | 8_4:-53859627 | Msa1333650:intron |
| AGCTATGTACATAGATGCCG+AGG | 0.576766 | 8_4:-53858892 | Msa1333650:CDS |
| TGTATGGTGAATTTCGATCT+GGG | 0.581170 | 8_4:-53859469 | Msa1333650:CDS |
| GACTCTTACAGATAGCAGAT+AGG | 0.586304 | 8_4:-53858851 | Msa1333650:intron |
| AGGGATTCAAAATGCGTCAG+AGG | 0.587974 | 8_4:+53860786 | None:intergenic |
| GTTTGGCTGAAGCCGAAGCA+AGG | 0.588117 | 8_4:-53857854 | Msa1333650:CDS |
| TGAAGCAGCTTCAATGATGG+TGG | 0.599232 | 8_4:-53858665 | Msa1333650:CDS |
| CTGAGGCCTAAATGTTCCCT+CGG | 0.602051 | 8_4:+53858875 | None:intergenic |
| AAGATCGAATCTTTAAACCA+TGG | 0.607413 | 8_4:-53860657 | Msa1333650:exon |
| AGTATAAGCAACAGATTCAA+CGG | 0.607715 | 8_4:+53860305 | None:intergenic |
| GTCAAGCTCTCTTGACCCGG+TGG | 0.607993 | 8_4:+53859641 | None:intergenic |
| ACAAGGTTAGCTCTCAGGAA+AGG | 0.614598 | 8_4:-53857918 | Msa1333650:CDS |
| TTCTCAGGCATCGGGTATAG+CGG | 0.620888 | 8_4:-53860367 | Msa1333650:intron |
| TTGCCACTAGATCAAGGAGG+AGG | 0.623636 | 8_4:-53858924 | Msa1333650:CDS |
| AGCTCTCAGGAAAGGAAGAG+GGG | 0.625477 | 8_4:-53857910 | Msa1333650:CDS |
| ACTAGATCAAGGAGGAGGTG+AGG | 0.625647 | 8_4:-53858919 | Msa1333650:CDS |
| GATAACGATAGTTTGTTGCA+GGG | 0.629808 | 8_4:-53857639 | Msa1333650:three_prime_UTR |
| CGATTATTCAGATAACCACC+GGG | 0.640229 | 8_4:-53859656 | Msa1333650:CDS |
| CTAGCGCTAGTAAAACCCAT+AGG | 0.648850 | 8_4:+53859702 | None:intergenic |
| GCGATTTGTACAGTAATTGG+GGG | 0.652251 | 8_4:+53860729 | None:intergenic |
| TCGAAATTCACCATACAACT+CGG | 0.653941 | 8_4:+53859475 | None:intergenic |
| TGGCTCATGCAACCACGACA+AGG | 0.656550 | 8_4:-53857935 | Msa1333650:CDS |
| ATAACACTGATCATCAGTCA+CGG | 0.679517 | 8_4:-53858696 | Msa1333650:CDS |
| GCTATGTACATAGATGCCGA+GGG | 0.713210 | 8_4:-53858891 | Msa1333650:CDS |
| GCTATCTGTAAGAGTCGCTG+AGG | 0.720598 | 8_4:+53858858 | None:intergenic |
| GAAACCGAAGAGATTCAACA+CGG | 0.755894 | 8_4:-53860593 | Msa1333650:CDS |
| TAGTTGCCACTAGATCAAGG+AGG | 0.810196 | 8_4:-53858927 | Msa1333650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAAATTAGAAATAAT+GGG | + | chr8_4:53857896-53857915 | None:intergenic | 10.0% |
| !! | TAAAAAGAAATTAGAAATAA+TGG | + | chr8_4:53857897-53857916 | None:intergenic | 10.0% |
| !!! | ATTATTTCTAATTTCTTTTT+AGG | - | chr8_4:53857896-53857915 | Msa1333650:CDS | 10.0% |
| !! | ACAAAAAATTATATCATTCA+AGG | + | chr8_4:53860625-53860644 | None:intergenic | 15.0% |
| !!! | TTCACTTTCAATTTTGTTTT+AGG | - | chr8_4:53858186-53858205 | Msa1333650:intron | 20.0% |
| !!! | TCACTTTCAATTTTGTTTTA+GGG | - | chr8_4:53858187-53858206 | Msa1333650:intron | 20.0% |
| !!! | TTTTAATAAGCTCTTTAGAA+TGG | - | chr8_4:53858442-53858461 | Msa1333650:intron | 20.0% |
| !! | ATAACCACTTATATGATAAA+TGG | - | chr8_4:53858518-53858537 | Msa1333650:intron | 20.0% |
| !! | ATAACCATTTATCATATAAG+TGG | + | chr8_4:53858525-53858544 | None:intergenic | 20.0% |
| !!! | ATAAATACTTTGTTTATGTG+TGG | - | chr8_4:53858800-53858819 | Msa1333650:intron | 20.0% |
| !!! | TAAATACTTTGTTTATGTGT+GGG | - | chr8_4:53858801-53858820 | Msa1333650:intron | 20.0% |
| !! | GTTTGAGTATTTGTATATAT+AGG | - | chr8_4:53859081-53859100 | Msa1333650:intron | 20.0% |
| !! | AAAATAACTAAAATAGTCCA+GGG | - | chr8_4:53859267-53859286 | Msa1333650:intron | 20.0% |
| !! | TAAGGAACATAAATATTGAA+TGG | + | chr8_4:53859612-53859631 | None:intergenic | 20.0% |
| !!! | AGATTTTTTTATACTAGTGA+TGG | - | chr8_4:53859920-53859939 | Msa1333650:intron | 20.0% |
| !!! | AGATATTGAAATTGTTTTTG+AGG | - | chr8_4:53859969-53859988 | Msa1333650:intron | 20.0% |
| !! | ACATATAAACATAATCAGTT+TGG | - | chr8_4:53860299-53860318 | Msa1333650:CDS | 20.0% |
| !!! | TTTTTTGCACTTTGAACAAT+CGG | + | chr8_4:53857927-53857946 | None:intergenic | 25.0% |
| ! | AACAACGATAATAGTCAATT+GGG | + | chr8_4:53857978-53857997 | None:intergenic | 25.0% |
| !! | AAAGATCTTTTGCAAATCAA+AGG | - | chr8_4:53858114-53858133 | Msa1333650:intron | 25.0% |
| !!! | ATTTTGTTTTAGGGTCTATT+TGG | - | chr8_4:53858196-53858215 | Msa1333650:intron | 25.0% |
| !! | CTAAGTTGAAAAAAGCTTAT+TGG | + | chr8_4:53858290-53858309 | None:intergenic | 25.0% |
| !!! | TAAGCTTTTTTCAACTTAGT+AGG | - | chr8_4:53858291-53858310 | Msa1333650:CDS | 25.0% |
| !!! | AAGCTTTTTTCAACTTAGTA+GGG | - | chr8_4:53858292-53858311 | Msa1333650:CDS | 25.0% |
| !!! | ACTTATGTTGTTTTCATGTA+AGG | + | chr8_4:53858319-53858338 | None:intergenic | 25.0% |
| !! | AAACAACATAAGTTCTTTTC+AGG | - | chr8_4:53858326-53858345 | Msa1333650:CDS | 25.0% |
| !! | AACAACATAAGTTCTTTTCA+GGG | - | chr8_4:53858327-53858346 | Msa1333650:CDS | 25.0% |
| ! | GATTAACATAATCAATTGTG+AGG | - | chr8_4:53858374-53858393 | Msa1333650:CDS | 25.0% |
| !! | AAGTGCTTTATTAAGTTGTT+TGG | - | chr8_4:53858550-53858569 | Msa1333650:intron | 25.0% |
| ! | AATTACATGAATTGAGTGTT+TGG | + | chr8_4:53858576-53858595 | None:intergenic | 25.0% |
| !!! | TATATATTGCTGTTTCAATC+AGG | - | chr8_4:53858869-53858888 | Msa1333650:CDS | 25.0% |
| ! | TGTATATATAGGAGAATACA+AGG | - | chr8_4:53859092-53859111 | Msa1333650:intron | 25.0% |
| ! | TTGAGAAAATAAGACAGAAT+AGG | + | chr8_4:53859208-53859227 | None:intergenic | 25.0% |
| !!! | TTACAGTTCATTCAAGTTTT+TGG | - | chr8_4:53859239-53859258 | Msa1333650:intron | 25.0% |
| !!! | TACAGTTCATTCAAGTTTTT+GGG | - | chr8_4:53859240-53859259 | Msa1333650:intron | 25.0% |
| !!! | CTGGACTATTTTAGTTATTT+TGG | + | chr8_4:53859268-53859287 | None:intergenic | 25.0% |
| ! | CAAAATAACTAAAATAGTCC+AGG | - | chr8_4:53859266-53859285 | Msa1333650:intron | 25.0% |
| ! | AAATAACTAAAATAGTCCAG+GGG | - | chr8_4:53859268-53859287 | Msa1333650:intron | 25.0% |
| ! | AATTACTAGGCAATGTTATT+AGG | + | chr8_4:53859424-53859443 | None:intergenic | 25.0% |
| ! | ATAAAGCCATATTATAACCT+TGG | + | chr8_4:53859810-53859829 | None:intergenic | 25.0% |
| ! | TTGCTTAGGATAGTAAATTT+AGG | - | chr8_4:53860252-53860271 | Msa1333650:CDS | 25.0% |
| ! | TTGATTGTGTAATTGTAGTT+TGG | - | chr8_4:53860337-53860356 | Msa1333650:CDS | 25.0% |
| ! | TTACAATTACAACTAGCAAA+AGG | + | chr8_4:53860659-53860678 | None:intergenic | 25.0% |
| TGAAGATGAAGATTGAAAGA+GGG | + | chr8_4:53857626-53857645 | None:intergenic | 30.0% | |
| ATGAAGATGAAGATTGAAAG+AGG | + | chr8_4:53857627-53857646 | None:intergenic | 30.0% | |
| TTGCGATTTGTACAGTAATT+GGG | + | chr8_4:53857666-53857685 | None:intergenic | 30.0% | |
| ATTGCGATTTGTACAGTAAT+TGG | + | chr8_4:53857667-53857686 | None:intergenic | 30.0% | |
| !!! | CTTTTTTCGAAGAGGAATTA+CGG | + | chr8_4:53857716-53857735 | None:intergenic | 30.0% |
| AAGATCGAATCTTTAAACCA+TGG | - | chr8_4:53857733-53857752 | Msa1333650:three_prime_UTR | 30.0% | |
| ATTAACCTGAAGTTGTTCTA+CGG | + | chr8_4:53857831-53857850 | None:intergenic | 30.0% | |
| ! | TAGAACAACTTCAGGTTAAT+GGG | - | chr8_4:53857831-53857850 | Msa1333650:CDS | 30.0% |
| ! | TTTTTGCACTTTGAACAATC+GGG | + | chr8_4:53857926-53857945 | None:intergenic | 30.0% |
| TCCATCATCAGAGAAAAAAA+GGG | + | chr8_4:53857952-53857971 | None:intergenic | 30.0% | |
| CAACAACGATAATAGTCAAT+TGG | + | chr8_4:53857979-53857998 | None:intergenic | 30.0% | |
| CTGTGTTTAATTGTATTCTC+AGG | - | chr8_4:53858008-53858027 | Msa1333650:CDS | 30.0% | |
| TTAATTGTATTCTCAGGCAT+CGG | - | chr8_4:53858014-53858033 | Msa1333650:CDS | 30.0% | |
| ATTAAGAAGCTTAAAGATGC+AGG | - | chr8_4:53858054-53858073 | Msa1333650:intron | 30.0% | |
| AGTATAAGCAACAGATTCAA+CGG | + | chr8_4:53858088-53858107 | None:intergenic | 30.0% | |
| ATTTGCAAAAGATCTTTCCT+AGG | + | chr8_4:53858111-53858130 | None:intergenic | 30.0% | |
| !!! | TTTCAGGGTCCTTTATTTTT+AGG | - | chr8_4:53858342-53858361 | Msa1333650:CDS | 30.0% |
| CAAACAGAGCCTAAAAATAA+AGG | + | chr8_4:53858354-53858373 | None:intergenic | 30.0% | |
| !!! | CTTTATTTTTAGGCTCTGTT+TGG | - | chr8_4:53858352-53858371 | Msa1333650:CDS | 30.0% |
| AATAAGCTGAAAACAGCTTA+TGG | + | chr8_4:53858424-53858443 | None:intergenic | 30.0% | |
| TTAATACCCATCATTGATGA+AGG | - | chr8_4:53858609-53858628 | Msa1333650:intron | 30.0% | |
| TTTGTTTGTTTATTGACAGC+TGG | - | chr8_4:53858655-53858674 | Msa1333650:intron | 30.0% | |
| ATTGTAGAAGAGGAAATTCT+TGG | - | chr8_4:53859167-53859186 | Msa1333650:intron | 30.0% | |
| CAACGATGAATTGAATTACT+AGG | + | chr8_4:53859437-53859456 | None:intergenic | 30.0% | |
| AATGGACATTTAACAGAAAC+AGG | + | chr8_4:53859594-53859613 | None:intergenic | 30.0% | |
| TTTATGTTCCTTAATACGAC+AGG | - | chr8_4:53859619-53859638 | Msa1333650:intron | 30.0% | |
| TCTAAACAATACTGAGCAAA+AGG | + | chr8_4:53859776-53859795 | None:intergenic | 30.0% | |
| CAATTGCCAAGGTTATAATA+TGG | - | chr8_4:53859801-53859820 | Msa1333650:intron | 30.0% | |
| AGCATTATTACCAGTTAAAC+AGG | - | chr8_4:53859851-53859870 | Msa1333650:intron | 30.0% | |
| AAATCTTACAATACAACGCA+AGG | + | chr8_4:53859906-53859925 | None:intergenic | 30.0% | |
| !!! | TTTTGAGGCTTACATTTTGA+TGG | - | chr8_4:53859984-53860003 | Msa1333650:intron | 30.0% |
| AGCTGATTAAGATATTGCTT+AGG | - | chr8_4:53860238-53860257 | Msa1333650:CDS | 30.0% | |
| ! | TAAAATCTGAAACCTTGCTT+CGG | + | chr8_4:53860551-53860570 | None:intergenic | 30.0% |
| ! | TCTGCAATAATGTTGAGTTT+TGG | - | chr8_4:53860709-53860728 | Msa1333650:five_prime_UTR | 30.0% |
| TGCGATTTGTACAGTAATTG+GGG | + | chr8_4:53857665-53857684 | None:intergenic | 35.0% | |
| !!! | GATTCGATCTTTTTTCGAAG+AGG | + | chr8_4:53857724-53857743 | None:intergenic | 35.0% |
| TTAACCTGAAGTTGTTCTAC+GGG | + | chr8_4:53857830-53857849 | None:intergenic | 35.0% | |
| ! | GTAGAACAACTTCAGGTTAA+TGG | - | chr8_4:53857830-53857849 | Msa1333650:CDS | 35.0% |
| !!! | ACCCTTTTTTTCTCTGATGA+TGG | - | chr8_4:53857948-53857967 | Msa1333650:CDS | 35.0% |
| CTCCATCATCAGAGAAAAAA+AGG | + | chr8_4:53857953-53857972 | None:intergenic | 35.0% | |
| !!! | CTTTTTTTCTCTGATGATGG+AGG | - | chr8_4:53857951-53857970 | Msa1333650:CDS | 35.0% |
| TAATTGTATTCTCAGGCATC+GGG | - | chr8_4:53858015-53858034 | Msa1333650:CDS | 35.0% | |
| ! | AATCTGTTGCTTATACTCCT+AGG | - | chr8_4:53858091-53858110 | Msa1333650:intron | 35.0% |
| TTCAATGATCTTGTCAACCT+TGG | + | chr8_4:53858151-53858170 | None:intergenic | 35.0% | |
| AGAAGACCTTCATCAATGAT+GGG | + | chr8_4:53858618-53858637 | None:intergenic | 35.0% | |
| TCGATTATTCAGATAACCAC+CGG | - | chr8_4:53858733-53858752 | Msa1333650:CDS | 35.0% | |
| AAGAGAGCTTGACAAGATAT+TGG | - | chr8_4:53858759-53858778 | Msa1333650:intron | 35.0% | |
| TTGACAAGATATTGGAAGGT+TGG | - | chr8_4:53858767-53858786 | Msa1333650:intron | 35.0% | |
| !! | ATATTGCTGTTTCAATCAGG+TGG | - | chr8_4:53858872-53858891 | Msa1333650:CDS | 35.0% |
| TCGAAATTCACCATACAACT+CGG | + | chr8_4:53858918-53858937 | None:intergenic | 35.0% | |
| TTGTATGGTGAATTTCGATC+TGG | - | chr8_4:53858920-53858939 | Msa1333650:CDS | 35.0% | |
| TGTATGGTGAATTTCGATCT+GGG | - | chr8_4:53858921-53858940 | Msa1333650:CDS | 35.0% | |
| AGGGAAACAAACAACATACT+TGG | + | chr8_4:53858982-53859001 | None:intergenic | 35.0% | |
| !! | CAAGAGGTATTGACACAAAA+GGG | + | chr8_4:53859001-53859020 | None:intergenic | 35.0% |
| !! | ACAAGAGGTATTGACACAAA+AGG | + | chr8_4:53859002-53859021 | None:intergenic | 35.0% |
| TAGTGACTCTATTGTAGAAG+AGG | - | chr8_4:53859157-53859176 | Msa1333650:intron | 35.0% | |
| ATGTCTATTTACATTTCCCC+TGG | + | chr8_4:53859287-53859306 | None:intergenic | 35.0% | |
| ATAACACTGATCATCAGTCA+CGG | - | chr8_4:53859694-53859713 | Msa1333650:CDS | 35.0% | |
| ! | AAACAAGGTATGACTTTTGC+TGG | - | chr8_4:53859748-53859767 | Msa1333650:intron | 35.0% |
| TGCTCAGTATTGTTTAGATC+TGG | - | chr8_4:53859778-53859797 | Msa1333650:intron | 35.0% | |
| TATTACCAGTTAAACAGGCT+AGG | - | chr8_4:53859856-53859875 | Msa1333650:intron | 35.0% | |
| TAAAACCTAGCCTGTTTAAC+TGG | + | chr8_4:53859864-53859883 | None:intergenic | 35.0% | |
| ACAACGCAAGGCATAATAAA+TGG | + | chr8_4:53859894-53859913 | None:intergenic | 35.0% | |
| AGTGATGGTTGATCTGAATT+TGG | - | chr8_4:53859935-53859954 | Msa1333650:intron | 35.0% | |
| !! | CATTTTGATGGCTTATATGC+AGG | - | chr8_4:53859996-53860015 | Msa1333650:intron | 35.0% |
| ! | CTCTATAGGACAGATTTTTC+CGG | - | chr8_4:53860052-53860071 | Msa1333650:intron | 35.0% |
| ATTTCGCTAAATGCATTTGC+CGG | + | chr8_4:53860096-53860115 | None:intergenic | 35.0% | |
| TGTGCATTACAATAGTGACA+TGG | + | chr8_4:53860160-53860179 | None:intergenic | 35.0% | |
| ! | TGTGTAATTGTAGTTTGGTG+TGG | - | chr8_4:53860342-53860361 | Msa1333650:CDS | 35.0% |
| ! | CAAGTAGTTTCACAAGTTGA+CGG | - | chr8_4:53860382-53860401 | Msa1333650:intron | 35.0% |
| ! | AGTGATTAGTTCTCCTTGTT+TGG | - | chr8_4:53860519-53860538 | Msa1333650:intron | 35.0% |
| ! | GAAGCAAGGTTTCAGATTTT+AGG | - | chr8_4:53860550-53860569 | Msa1333650:intron | 35.0% |
| GGTTCAGACAATGCTAAAAT+TGG | + | chr8_4:53860604-53860623 | None:intergenic | 35.0% | |
| !! | TGATAACGATAGTTTGTTGC+AGG | - | chr8_4:53860750-53860769 | Msa1333650:five_prime_UTR | 35.0% |
| !! | GATAACGATAGTTTGTTGCA+GGG | - | chr8_4:53860751-53860770 | Msa1333650:five_prime_UTR | 35.0% |
| GCGATTTGTACAGTAATTGG+GGG | + | chr8_4:53857664-53857683 | None:intergenic | 40.0% | |
| GTTGAATCTCTTCGGTTTCT+TGG | + | chr8_4:53857796-53857815 | None:intergenic | 40.0% | |
| GAAACCGAAGAGATTCAACA+CGG | - | chr8_4:53857797-53857816 | Msa1333650:exon | 40.0% | |
| TGAAGTTGTTCTACGGGTAA+AGG | + | chr8_4:53857824-53857843 | None:intergenic | 40.0% | |
| TTTACCCGTAGAACAACTTC+AGG | - | chr8_4:53857823-53857842 | Msa1333650:CDS | 40.0% | |
| GTTGACAAGATCATTGAAGC+AGG | - | chr8_4:53858153-53858172 | Msa1333650:intron | 40.0% | |
| CAGAAGACCTTCATCAATGA+TGG | + | chr8_4:53858619-53858638 | None:intergenic | 40.0% | |
| TTTATTGACAGCTGGTAAGC+TGG | - | chr8_4:53858663-53858682 | Msa1333650:CDS | 40.0% | |
| CGATTATTCAGATAACCACC+GGG | - | chr8_4:53858734-53858753 | Msa1333650:CDS | 40.0% | |
| GAGCTTGACAAGATATTGGA+AGG | - | chr8_4:53858763-53858782 | Msa1333650:intron | 40.0% | |
| TCAATCAGGTGGAATTGAGA+CGG | - | chr8_4:53858883-53858902 | Msa1333650:CDS | 40.0% | |
| !! | GTAGAAAGCACTAGAACAAG+AGG | + | chr8_4:53859017-53859036 | None:intergenic | 40.0% |
| TTCTAGTGCTTTCTACCAAG+TGG | - | chr8_4:53859021-53859040 | Msa1333650:intron | 40.0% | |
| !! | CTACCAAGTGGTAACTTGTT+AGG | - | chr8_4:53859033-53859052 | Msa1333650:intron | 40.0% |
| TCTCCTAACAAGTTACCACT+TGG | + | chr8_4:53859039-53859058 | None:intergenic | 40.0% | |
| GTAGAAGAGGAAATTCTTGG+AGG | - | chr8_4:53859170-53859189 | Msa1333650:intron | 40.0% | |
| TTGTAGTTGCCACTAGATCA+AGG | - | chr8_4:53859460-53859479 | Msa1333650:CDS | 40.0% | |
| GACTCTTACAGATAGCAGAT+AGG | - | chr8_4:53859539-53859558 | Msa1333650:intron | 40.0% | |
| GTTCCTTAATACGACAGGTT+TGG | - | chr8_4:53859624-53859643 | Msa1333650:intron | 40.0% | |
| AGTCCAAACCTGTCGTATTA+AGG | + | chr8_4:53859630-53859649 | None:intergenic | 40.0% | |
| ACTGAATGGTCCTGATGTAT+TGG | - | chr8_4:53859647-53859666 | Msa1333650:CDS | 40.0% | |
| ! | GCGACATTTTCCAATACATC+AGG | + | chr8_4:53859660-53859679 | None:intergenic | 40.0% |
| ACTTGAAGCAGCTTCAATGA+TGG | - | chr8_4:53859722-53859741 | Msa1333650:intron | 40.0% | |
| !! | CTTCAATGATGGTGGAAACA+AGG | - | chr8_4:53859733-53859752 | Msa1333650:intron | 40.0% |
| TTTAGATCTGGCAATTGCCA+AGG | - | chr8_4:53859790-53859809 | Msa1333650:intron | 40.0% | |
| TTTCGCTAAATGCATTTGCC+GGG | + | chr8_4:53860095-53860114 | None:intergenic | 40.0% | |
| ! | CTAATTTCTGAAGGCTTCTC+AGG | + | chr8_4:53860120-53860139 | None:intergenic | 40.0% |
| CCTCATCTGCTAATTTCTGA+AGG | + | chr8_4:53860129-53860148 | None:intergenic | 40.0% | |
| CCTTCAGAAATTAGCAGATG+AGG | - | chr8_4:53860126-53860145 | Msa1333650:intron | 40.0% | |
| CGTCAACTTGTGAAACTACT+TGG | + | chr8_4:53860384-53860403 | None:intergenic | 40.0% | |
| ! | AGGTTTCAGATTTTAGGCGA+AGG | - | chr8_4:53860556-53860575 | Msa1333650:intron | 40.0% |
| ! | GGTTTCAGATTTTAGGCGAA+GGG | - | chr8_4:53860557-53860576 | Msa1333650:intron | 40.0% |
| ! | GTTTCAGATTTTAGGCGAAG+GGG | - | chr8_4:53860558-53860577 | Msa1333650:intron | 40.0% |
| AGGGATTCAAAATGCGTCAG+AGG | + | chr8_4:53857607-53857626 | None:intergenic | 45.0% | |
| AGGACCGTGTTGAATCTCTT+CGG | + | chr8_4:53857804-53857823 | None:intergenic | 45.0% | |
| !! | CAAAGGTATCAGTGATGCCA+AGG | - | chr8_4:53858131-53858150 | Msa1333650:intron | 45.0% |
| ATGAAGGTCTTCTGAGTCTG+TGG | - | chr8_4:53858625-53858644 | Msa1333650:intron | 45.0% | |
| CTAGCGCTAGTAAAACCCAT+AGG | + | chr8_4:53858691-53858710 | None:intergenic | 45.0% | |
| CAATCAGGTGGAATTGAGAC+GGG | - | chr8_4:53858884-53858903 | Msa1333650:CDS | 45.0% | |
| GGTTCTATCACCGAGTTGTA+TGG | - | chr8_4:53858905-53858924 | Msa1333650:CDS | 45.0% | |
| TAGTTGCCACTAGATCAAGG+AGG | - | chr8_4:53859463-53859482 | Msa1333650:CDS | 45.0% | |
| AGCTATGTACATAGATGCCG+AGG | - | chr8_4:53859498-53859517 | Msa1333650:CDS | 45.0% | |
| GCTATGTACATAGATGCCGA+GGG | - | chr8_4:53859499-53859518 | Msa1333650:CDS | 45.0% | |
| TAGATGCCGAGGGAACATTT+AGG | - | chr8_4:53859509-53859528 | Msa1333650:intron | 45.0% | |
| TACGACAGGTTTGGACTGAA+TGG | - | chr8_4:53859633-53859652 | Msa1333650:CDS | 45.0% | |
| TGAAGCAGCTTCAATGATGG+TGG | - | chr8_4:53859725-53859744 | Msa1333650:intron | 45.0% | |
| ! | ACAGTGCTACTGCTCTCTAT+AGG | - | chr8_4:53860038-53860057 | Msa1333650:intron | 45.0% |
| ! | AGGACAGATTTTTCCGGAAG+AGG | - | chr8_4:53860058-53860077 | Msa1333650:intron | 45.0% |
| ! | GGACAGATTTTTCCGGAAGA+GGG | - | chr8_4:53860059-53860078 | Msa1333650:intron | 45.0% |
| ! | GACAGATTTTTCCGGAAGAG+GGG | - | chr8_4:53860060-53860079 | Msa1333650:intron | 45.0% |
| AATGTTGCCACCAATTGGCT+TGG | + | chr8_4:53860434-53860453 | None:intergenic | 45.0% | |
| ! | GCCAATTGGTGGCAACATTA+TGG | - | chr8_4:53860435-53860454 | Msa1333650:intron | 45.0% |
| GCCATAATGTTGCCACCAAT+TGG | + | chr8_4:53860439-53860458 | None:intergenic | 45.0% | |
| ! | ACAAGGTTAGCTCTCAGGAA+AGG | - | chr8_4:53860472-53860491 | Msa1333650:intron | 45.0% |
| ! | TTAGCTCTCAGGAAAGGAAG+AGG | - | chr8_4:53860478-53860497 | Msa1333650:intron | 45.0% |
| TAGCTCTCAGGAAAGGAAGA+GGG | - | chr8_4:53860479-53860498 | Msa1333650:intron | 45.0% | |
| ! | GATTTTAGGCGAAGGGGTTT+CGG | - | chr8_4:53860564-53860583 | Msa1333650:intron | 45.0% |
| CTCAAGTCGTTGTTGCTCCA+TGG | + | chr8_4:53857753-53857772 | None:intergenic | 50.0% | |
| !! | TTCTCAGGCATCGGGTATAG+CGG | - | chr8_4:53858023-53858042 | Msa1333650:CDS | 50.0% |
| CTTGTCAAGCTCTCTTGACC+CGG | + | chr8_4:53858755-53858774 | None:intergenic | 50.0% | |
| TTGCCACTAGATCAAGGAGG+AGG | - | chr8_4:53859466-53859485 | Msa1333650:CDS | 50.0% | |
| TCACCTCCTCCTTGATCTAG+TGG | + | chr8_4:53859472-53859491 | None:intergenic | 50.0% | |
| ACTAGATCAAGGAGGAGGTG+AGG | - | chr8_4:53859471-53859490 | Msa1333650:CDS | 50.0% | |
| CTAGATCAAGGAGGAGGTGA+GGG | - | chr8_4:53859472-53859491 | Msa1333650:CDS | 50.0% | |
| CTGAGGCCTAAATGTTCCCT+CGG | + | chr8_4:53859518-53859537 | None:intergenic | 50.0% | |
| GCTATCTGTAAGAGTCGCTG+AGG | + | chr8_4:53859535-53859554 | None:intergenic | 50.0% | |
| GACGGTTCTGCAATGTTTGC+TGG | - | chr8_4:53860400-53860419 | Msa1333650:intron | 50.0% | |
| !! | CCACCAATTGGCTTGGTTTG+GGG | + | chr8_4:53860427-53860446 | None:intergenic | 50.0% |
| !! | GCCACCAATTGGCTTGGTTT+GGG | + | chr8_4:53860428-53860447 | None:intergenic | 50.0% |
| !! | TGCCACCAATTGGCTTGGTT+TGG | + | chr8_4:53860429-53860448 | None:intergenic | 50.0% |
| AGCTCTCAGGAAAGGAAGAG+GGG | - | chr8_4:53860480-53860499 | Msa1333650:intron | 50.0% | |
| AGCTGGTAAGCTGGTGCCTA+TGG | - | chr8_4:53858672-53858691 | Msa1333650:CDS | 55.0% | |
| GCTGGTAAGCTGGTGCCTAT+GGG | - | chr8_4:53858673-53858692 | Msa1333650:CDS | 55.0% | |
| GGACCCCAAACCAAGCCAAT+TGG | - | chr8_4:53860421-53860440 | Msa1333650:intron | 55.0% | |
| CCCCAAACCAAGCCAATTGG+TGG | - | chr8_4:53860424-53860443 | Msa1333650:intron | 55.0% | |
| TGGCTCATGCAACCACGACA+AGG | - | chr8_4:53860455-53860474 | Msa1333650:intron | 55.0% | |
| CCTGAGAGCTAACCTTGTCG+TGG | + | chr8_4:53860470-53860489 | None:intergenic | 55.0% | |
| ! | CCACGACAAGGTTAGCTCTC+AGG | - | chr8_4:53860467-53860486 | Msa1333650:intron | 55.0% |
| GCTTCGGCTTCAGCCAAACA+AGG | + | chr8_4:53860535-53860554 | None:intergenic | 55.0% | |
| GTTTGGCTGAAGCCGAAGCA+AGG | - | chr8_4:53860536-53860555 | Msa1333650:intron | 55.0% | |
| GTCAAGCTCTCTTGACCCGG+TGG | + | chr8_4:53858752-53858771 | None:intergenic | 60.0% | |
| GGCTGAAAGCTCCCCTCTTC+CGG | + | chr8_4:53860074-53860093 | None:intergenic | 60.0% | |
| GAAGAGGGGAGCTTTCAGCC+CGG | - | chr8_4:53860074-53860093 | Msa1333650:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 53857588 | 53860824 | 53857588 | ID=Msa1333650;Name=Msa1333650 |
| chr8_4 | mRNA | 53857588 | 53860824 | 53857588 | ID=Msa1333650-mRNA-1;Parent=Msa1333650;Name=Msa1333650-mRNA-1;_AED=0.02;_eAED=0.02;_QI=164|1|1|1|1|1|8|224|341 |
| chr8_4 | exon | 53857588 | 53858057 | 53857588 | ID=Msa1333650-mRNA-1:exon:16547;Parent=Msa1333650-mRNA-1 |
| chr8_4 | exon | 53858265 | 53858394 | 53858265 | ID=Msa1333650-mRNA-1:exon:16546;Parent=Msa1333650-mRNA-1 |
| chr8_4 | exon | 53858658 | 53858771 | 53858658 | ID=Msa1333650-mRNA-1:exon:16545;Parent=Msa1333650-mRNA-1 |
| chr8_4 | exon | 53858852 | 53858946 | 53858852 | ID=Msa1333650-mRNA-1:exon:16544;Parent=Msa1333650-mRNA-1 |
| chr8_4 | exon | 53859430 | 53859521 | 53859430 | ID=Msa1333650-mRNA-1:exon:16543;Parent=Msa1333650-mRNA-1 |
| chr8_4 | exon | 53859628 | 53859738 | 53859628 | ID=Msa1333650-mRNA-1:exon:16542;Parent=Msa1333650-mRNA-1 |
| chr8_4 | exon | 53860238 | 53860382 | 53860238 | ID=Msa1333650-mRNA-1:exon:16541;Parent=Msa1333650-mRNA-1 |
| chr8_4 | exon | 53860568 | 53860824 | 53860568 | ID=Msa1333650-mRNA-1:exon:16540;Parent=Msa1333650-mRNA-1 |
| chr8_4 | five_prime_UTR | 53860661 | 53860824 | 53860661 | ID=Msa1333650-mRNA-1:five_prime_utr;Parent=Msa1333650-mRNA-1 |
| chr8_4 | CDS | 53860568 | 53860660 | 53860568 | ID=Msa1333650-mRNA-1:cds;Parent=Msa1333650-mRNA-1 |
| chr8_4 | CDS | 53860238 | 53860382 | 53860238 | ID=Msa1333650-mRNA-1:cds;Parent=Msa1333650-mRNA-1 |
| chr8_4 | CDS | 53859628 | 53859738 | 53859628 | ID=Msa1333650-mRNA-1:cds;Parent=Msa1333650-mRNA-1 |
| chr8_4 | CDS | 53859430 | 53859521 | 53859430 | ID=Msa1333650-mRNA-1:cds;Parent=Msa1333650-mRNA-1 |
| chr8_4 | CDS | 53858852 | 53858946 | 53858852 | ID=Msa1333650-mRNA-1:cds;Parent=Msa1333650-mRNA-1 |
| chr8_4 | CDS | 53858658 | 53858771 | 53858658 | ID=Msa1333650-mRNA-1:cds;Parent=Msa1333650-mRNA-1 |
| chr8_4 | CDS | 53858265 | 53858394 | 53858265 | ID=Msa1333650-mRNA-1:cds;Parent=Msa1333650-mRNA-1 |
| chr8_4 | CDS | 53857812 | 53858057 | 53857812 | ID=Msa1333650-mRNA-1:cds;Parent=Msa1333650-mRNA-1 |
| chr8_4 | three_prime_UTR | 53857588 | 53857811 | 53857588 | ID=Msa1333650-mRNA-1:three_prime_utr;Parent=Msa1333650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
