Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444930 | sp|Q40134|RAD51_SOLLC | 88.304 | 342 | 39 | 1 | 1 | 341 | 1 | 342 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444930 | G7JS36 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 695 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030070 | Msa1444930 | 0.809093 | 2.242977e-50 | -8.615850e-47 |
| Msa0032230 | Msa1444930 | 0.844959 | 5.472081e-59 | -8.615850e-47 |
| Msa0050530 | Msa1444930 | 0.801378 | 9.261412e-49 | -8.615850e-47 |
| Msa0093210 | Msa1444930 | 0.963484 | 3.850602e-122 | -8.615850e-47 |
| Msa0100600 | Msa1444930 | 0.811939 | 5.446339e-51 | -8.615850e-47 |
| Msa0100890 | Msa1444930 | 0.803716 | 3.052646e-49 | -8.615850e-47 |
| Msa1393560 | Msa1444930 | 0.816573 | 5.157511e-52 | -8.615850e-47 |
| Msa1399190 | Msa1444930 | 0.837707 | 4.433706e-57 | -8.615850e-47 |
| Msa1426320 | Msa1444930 | 0.821198 | 4.585627e-53 | -8.615850e-47 |
| Msa1428690 | Msa1444930 | 0.998245 | 9.110469e-260 | -8.615850e-47 |
| Msa1435100 | Msa1444930 | 0.828493 | 8.721105e-55 | -8.615850e-47 |
| Msa1439730 | Msa1444930 | 0.832896 | 7.278070e-56 | -8.615850e-47 |
| Msa1444930 | Msa1461260 | 0.823442 | 1.382303e-53 | -8.615850e-47 |
| Msa0618840 | Msa1444930 | 0.801629 | 8.229430e-49 | -8.615850e-47 |
| Msa0618990 | Msa1444930 | 0.820268 | 7.501279e-53 | -8.615850e-47 |
| Msa0625620 | Msa1444930 | 0.811671 | 6.230875e-51 | -8.615850e-47 |
| Msa0640800 | Msa1444930 | 0.813143 | 2.971011e-51 | -8.615850e-47 |
| Msa0647440 | Msa1444930 | 0.806698 | 7.250521e-50 | -8.615850e-47 |
| Msa0689830 | Msa1444930 | 0.803186 | 3.931073e-49 | -8.615850e-47 |
| Msa0690740 | Msa1444930 | 0.802219 | 6.223862e-49 | -8.615850e-47 |
| Msa0705180 | Msa1444930 | 0.803859 | 2.851227e-49 | -8.615850e-47 |
| Msa0707260 | Msa1444930 | 0.826511 | 2.605560e-54 | -8.615850e-47 |
| Msa0708980 | Msa1444930 | 0.802405 | 5.698990e-49 | -8.615850e-47 |
| Msa0737020 | Msa1444930 | 0.814661 | 1.374970e-51 | -8.615850e-47 |
| Msa0125590 | Msa1444930 | 0.826301 | 2.924443e-54 | -8.615850e-47 |
| Msa0127270 | Msa1444930 | 0.828823 | 7.256892e-55 | -8.615850e-47 |
| Msa0129960 | Msa1444930 | 0.812868 | 3.414258e-51 | -8.615850e-47 |
| Msa0172510 | Msa1444930 | 0.807100 | 5.959515e-50 | -8.615850e-47 |
| Msa0180100 | Msa1444930 | -0.803196 | 3.913025e-49 | -8.615850e-47 |
| Msa0186360 | Msa1444930 | 0.801721 | 7.878455e-49 | -8.615850e-47 |
| Msa0192050 | Msa1444930 | 0.818798 | 1.624231e-52 | -8.615850e-47 |
| Msa0236820 | Msa1444930 | 0.801779 | 7.664610e-49 | -8.615850e-47 |
| Msa1266620 | Msa1444930 | 0.968022 | 4.328578e-128 | -8.615850e-47 |
| Msa1267150 | Msa1444930 | 0.943266 | 1.639349e-102 | -8.615850e-47 |
| Msa1294280 | Msa1444930 | 0.816389 | 5.670833e-52 | -8.615850e-47 |
| Msa1301830 | Msa1444930 | 0.804320 | 2.285465e-49 | -8.615850e-47 |
| Msa1315500 | Msa1444930 | 0.802684 | 4.991000e-49 | -8.615850e-47 |
| Msa1328870 | Msa1444930 | 0.801188 | 1.012816e-48 | -8.615850e-47 |
| Msa1333650 | Msa1444930 | 0.962491 | 6.109471e-121 | -8.615850e-47 |
| Msa1339230 | Msa1444930 | 0.820409 | 6.963133e-53 | -8.615850e-47 |
| Msa0373170 | Msa1444930 | 0.801189 | 1.012496e-48 | -8.615850e-47 |
| Msa0382230 | Msa1444930 | 0.832469 | 9.289196e-56 | -8.615850e-47 |
| Msa0388250 | Msa1444930 | 0.805325 | 1.409512e-49 | -8.615850e-47 |
| Msa0388620 | Msa1444930 | 0.815925 | 7.200456e-52 | -8.615850e-47 |
| Msa0416210 | Msa1444930 | 0.820004 | 8.621799e-53 | -8.615850e-47 |
| Msa0433630 | Msa1444930 | 0.837206 | 5.961081e-57 | -8.615850e-47 |
| Msa0456670 | Msa1444930 | 0.817416 | 3.335586e-52 | -8.615850e-47 |
| Msa0468620 | Msa1444930 | 0.815863 | 7.435465e-52 | -8.615850e-47 |
| Msa1000780 | Msa1444930 | 0.859785 | 3.251766e-63 | -8.615850e-47 |
| Msa1041370 | Msa1444930 | 0.811169 | 8.007370e-51 | -8.615850e-47 |
| Msa0288400 | Msa1444930 | 0.805693 | 1.180350e-49 | -8.615850e-47 |
| Msa0342220 | Msa1444930 | 0.803652 | 3.147873e-49 | -8.615850e-47 |
| Msa1201170 | Msa1444930 | 0.808992 | 2.357693e-50 | -8.615850e-47 |
| Msa1201780 | Msa1444930 | 0.802802 | 4.719963e-49 | -8.615850e-47 |
| Msa1206040 | Msa1444930 | 0.802843 | 4.628944e-49 | -8.615850e-47 |
| Msa1219640 | Msa1444930 | 0.970404 | 1.447193e-131 | -8.615850e-47 |
| Msa0514020 | Msa1444930 | 0.809615 | 1.733195e-50 | -8.615850e-47 |
| Msa0514500 | Msa1444930 | 0.814481 | 1.507025e-51 | -8.615850e-47 |
| Msa0520680 | Msa1444930 | 0.824193 | 9.217965e-54 | -8.615850e-47 |
| Msa0521510 | Msa1444930 | 0.840613 | 7.824025e-58 | -8.615850e-47 |
| Msa0521530 | Msa1444930 | 0.819478 | 1.137192e-52 | -8.615850e-47 |
| Msa0544410 | Msa1444930 | 0.808632 | 2.815648e-50 | -8.615850e-47 |
| Msa0544430 | Msa1444930 | 0.821614 | 3.677104e-53 | -8.615850e-47 |
| Msa0572830 | Msa1444930 | 0.821129 | 4.758294e-53 | -8.615850e-47 |
| Msa0586200 | Msa1444930 | 0.801583 | 8.407410e-49 | -8.615850e-47 |
| Msa0846900 | Msa1444930 | 0.832863 | 7.416639e-56 | -8.615850e-47 |
| Msa0861440 | Msa1444930 | 0.807632 | 4.598340e-50 | -8.615850e-47 |
| Msa0880280 | Msa1444930 | 0.964221 | 4.704816e-123 | -8.615850e-47 |
| Msa0926310 | Msa1444930 | 0.846024 | 2.816391e-59 | -8.615850e-47 |
| Msa0930040 | Msa1444930 | 0.811882 | 5.604496e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444930 | MtrunA17_Chr4g0069901 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 695 |
| Msa1444930 | MtrunA17_Chr1g0204601 | 54.817 | 301 | 135 | 1 | 27 | 327 | 32 | 331 | 2.23e-112 | 330 |
| Msa1444930 | MtrunA17_Chr4g0011421 | 30.723 | 332 | 185 | 9 | 42 | 338 | 15 | 336 | 3.56e-30 | 117 |
| Msa1444930 | MtrunA17_Chr4g0062441 | 33.463 | 257 | 140 | 7 | 104 | 338 | 11 | 258 | 1.14e-29 | 114 |
| Msa1444930 | MtrunA17_Chr5g0443271 | 40.741 | 135 | 58 | 2 | 193 | 327 | 17 | 129 | 9.95e-23 | 92.8 |
| Msa1444930 | MtrunA17_Chr2g0305351 | 28.938 | 273 | 166 | 7 | 93 | 340 | 11 | 280 | 7.81e-21 | 90.9 |
| Msa1444930 | MtrunA17_Chr2g0325901 | 29.119 | 261 | 151 | 7 | 103 | 336 | 101 | 354 | 1.78e-19 | 88.6 |
| Msa1444930 | MtrunA17_Chr4g0030771 | 27.386 | 241 | 143 | 8 | 104 | 327 | 89 | 314 | 1.69e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444930 | AT5G20850.1 | 87.683 | 341 | 40 | 1 | 1 | 341 | 4 | 342 | 0.0 | 624 |
| Msa1444930 | AT5G20850.2 | 88.040 | 301 | 34 | 1 | 1 | 301 | 4 | 302 | 0.0 | 557 |
| Msa1444930 | AT3G22880.1 | 53.651 | 315 | 145 | 1 | 27 | 341 | 31 | 344 | 3.70e-116 | 340 |
| Msa1444930 | AT3G22880.2 | 53.821 | 301 | 138 | 1 | 27 | 327 | 31 | 330 | 6.51e-111 | 326 |
| Msa1444930 | AT2G45280.1 | 31.000 | 300 | 169 | 7 | 42 | 312 | 36 | 326 | 1.23e-25 | 105 |
| Msa1444930 | AT2G45280.2 | 32.661 | 248 | 136 | 6 | 87 | 312 | 112 | 350 | 3.53e-25 | 105 |
| Msa1444930 | AT5G57450.2 | 27.465 | 284 | 160 | 6 | 103 | 340 | 20 | 303 | 4.65e-24 | 100 |
| Msa1444930 | AT5G57450.1 | 27.465 | 284 | 160 | 6 | 103 | 340 | 20 | 303 | 4.65e-24 | 100 |
| Msa1444930 | AT2G28560.3 | 29.057 | 265 | 156 | 7 | 103 | 341 | 51 | 309 | 2.38e-20 | 90.9 |
| Msa1444930 | AT2G28560.1 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 3.79e-20 | 90.5 |
| Msa1444930 | AT2G28560.6 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 4.18e-20 | 90.5 |
| Msa1444930 | AT2G28560.5 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 4.18e-20 | 90.5 |
| Msa1444930 | AT2G28560.2 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 4.18e-20 | 90.5 |
| Msa1444930 | AT2G28560.4 | 30.556 | 180 | 113 | 4 | 103 | 274 | 51 | 226 | 1.12e-15 | 75.9 |
| Msa1444930 | AT1G07745.1 | 25.941 | 239 | 154 | 6 | 76 | 306 | 64 | 287 | 1.06e-12 | 68.6 |
| Msa1444930 | AT1G07745.2 | 25.941 | 239 | 154 | 6 | 76 | 306 | 46 | 269 | 1.49e-12 | 67.8 |
Find 96 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGAATCTCTTCGGTTTCT+TGG | 0.161205 | tig0030854:-33731 | None:intergenic |
| GCCACCAATTGGCTTGGTTT+GGG | 0.257944 | tig0030854:-36358 | None:intergenic |
| ATTGCGATTTGTACAGTAAT+TGG | 0.263852 | tig0030854:-33602 | None:intergenic |
| GCCAATTGGTGGCAACATTA+TGG | 0.293831 | tig0030854:+36368 | Msa1444930:CDS |
| GGCTGAAAGCTCCCCTCTTC+CGG | 0.313600 | tig0030854:-36004 | None:intergenic |
| AGTGATTAGTTCTCCTTGTT+TGG | 0.313602 | tig0030854:+36452 | Msa1444930:CDS |
| TGCCACCAATTGGCTTGGTT+TGG | 0.332160 | tig0030854:-36359 | None:intergenic |
| TTGCGATTTGTACAGTAATT+GGG | 0.340715 | tig0030854:-33601 | None:intergenic |
| AGCTGGTAAGCTGGTGCCTA+TGG | 0.346402 | tig0030854:+34605 | Msa1444930:intron |
| CGTCAACTTGTGAAACTACT+TGG | 0.353913 | tig0030854:-36314 | None:intergenic |
| TGATAACGATAGTTTGTTGC+AGG | 0.356824 | tig0030854:+36684 | Msa1444930:three_prime_UTR |
| GACGGTTCTGCAATGTTTGC+TGG | 0.369464 | tig0030854:+36333 | Msa1444930:CDS |
| TCTGCAATAATGTTGAGTTT+TGG | 0.369673 | tig0030854:+36643 | Msa1444930:three_prime_UTR |
| GGTTCAGACAATGCTAAAAT+TGG | 0.370907 | tig0030854:-36534 | None:intergenic |
| CTAATTTCTGAAGGCTTCTC+AGG | 0.371141 | tig0030854:-36050 | None:intergenic |
| ATTTCGCTAAATGCATTTGC+CGG | 0.371203 | tig0030854:-36026 | None:intergenic |
| AAGAGAGCTTGACAAGATAT+TGG | 0.386237 | tig0030854:+34692 | Msa1444930:CDS |
| TTTACCCGTAGAACAACTTC+AGG | 0.397476 | tig0030854:+33761 | Msa1444930:CDS |
| AAGAAGATGAAGATTGAAAG+AGG | 0.407701 | tig0030854:-33574 | None:intergenic |
| GCCATAATGTTGCCACCAAT+TGG | 0.411385 | tig0030854:-36369 | None:intergenic |
| CTCAAGTCGTTGTTGCTCCA+TGG | 0.416061 | tig0030854:-33688 | None:intergenic |
| TTGTATGGTGAATTTCGATC+TGG | 0.418493 | tig0030854:+34853 | Msa1444930:CDS |
| TAATTGTATTCTCAGGCATC+GGG | 0.449868 | tig0030854:+33952 | Msa1444930:intron |
| TACGACAGGTTTGGACTGAA+TGG | 0.457584 | tig0030854:+35566 | Msa1444930:intron |
| CCACCAATTGGCTTGGTTTG+GGG | 0.463690 | tig0030854:-36357 | None:intergenic |
| TTACAATTACAACTAGCAAA+AGG | 0.465295 | tig0030854:-36590 | None:intergenic |
| CAATCAGGTGGAATTGAGAC+GGG | 0.472160 | tig0030854:+34817 | Msa1444930:intron |
| ACTGAATGGTCCTGATGTAT+TGG | 0.472714 | tig0030854:+35580 | Msa1444930:CDS |
| AATCTGTTGCTTATACTCCT+AGG | 0.488123 | tig0030854:+34028 | Msa1444930:CDS |
| GGTTCTATCACCGAGTTGTA+TGG | 0.488506 | tig0030854:+34838 | Msa1444930:CDS |
| ACAGTGCTACTGCTCTCTAT+AGG | 0.490455 | tig0030854:+35971 | Msa1444930:CDS |
| GGACCCCAAACCAAGCCAAT+TGG | 0.494568 | tig0030854:+36354 | Msa1444930:CDS |
| CCACGACAAGGTTAGCTCTC+AGG | 0.496287 | tig0030854:+36400 | Msa1444930:CDS |
| ATTAAGAAGCTTAAAGATGC+AGG | 0.498423 | tig0030854:+33991 | Msa1444930:CDS |
| TAAAATCTGAAACCTTGCTT+CGG | 0.499109 | tig0030854:-36481 | None:intergenic |
| TTTATTGACAGCTGGTAAGC+TGG | 0.500060 | tig0030854:+34596 | Msa1444930:intron |
| AATGTTGCCACCAATTGGCT+TGG | 0.501653 | tig0030854:-36364 | None:intergenic |
| ATTTGCAAAAGATCTTTCCT+AGG | 0.502674 | tig0030854:-34045 | None:intergenic |
| TTCAATGATCTTGTCAACCT+TGG | 0.504239 | tig0030854:-34085 | None:intergenic |
| TGAAGTTGTTCTACGGGTAA+AGG | 0.508750 | tig0030854:-33759 | None:intergenic |
| AGGACCGTGTTGAATCTCTT+CGG | 0.510828 | tig0030854:-33739 | None:intergenic |
| CCTCATCTGCTAATTTCTGA+AGG | 0.511857 | tig0030854:-36059 | None:intergenic |
| GCTGGTAAGCTGGTGCCTAT+GGG | 0.516629 | tig0030854:+34606 | Msa1444930:intron |
| CAAGTAGTTTCACAAGTTGA+CGG | 0.519262 | tig0030854:+36315 | Msa1444930:CDS |
| TAGATGCCGAGGGAACATTT+AGG | 0.520366 | tig0030854:+35442 | Msa1444930:CDS |
| TTAACCTGAAGTTGTTCTAC+GGG | 0.520860 | tig0030854:-33765 | None:intergenic |
| CCATTACAGAGAGGGGAAAG+AGG | 0.522157 | tig0030854:-36746 | None:intergenic |
| TGCGATTTGTACAGTAATTG+GGG | 0.523400 | tig0030854:-33600 | None:intergenic |
| ACTTGAAGCAGCTTCAATGA+TGG | 0.525271 | tig0030854:+35655 | Msa1444930:CDS |
| ATTAACCTGAAGTTGTTCTA+CGG | 0.528625 | tig0030854:-33766 | None:intergenic |
| TTTCGCTAAATGCATTTGCC+GGG | 0.529004 | tig0030854:-36025 | None:intergenic |
| CCCCAAACCAAGCCAATTGG+TGG | 0.539489 | tig0030854:+36357 | Msa1444930:CDS |
| CTTGTCAAGCTCTCTTGACC+CGG | 0.542171 | tig0030854:-34685 | None:intergenic |
| CTTCAATGATGGTGGAAACA+AGG | 0.543376 | tig0030854:+35666 | Msa1444930:CDS |
| TTAGCTCTCAGGAAAGGAAG+AGG | 0.549474 | tig0030854:+36411 | Msa1444930:CDS |
| TTGTAGTTGCCACTAGATCA+AGG | 0.550547 | tig0030854:+35393 | Msa1444930:intron |
| TCAATCAGGTGGAATTGAGA+CGG | 0.551223 | tig0030854:+34816 | Msa1444930:intron |
| TCGATTATTCAGATAACCAC+CGG | 0.554130 | tig0030854:+34666 | Msa1444930:CDS |
| GCTTCGGCTTCAGCCAAACA+AGG | 0.555538 | tig0030854:-36465 | None:intergenic |
| TGTGTAATTGTAGTTTGGTG+TGG | 0.558015 | tig0030854:+36275 | Msa1444930:intron |
| CAAAGGTATCAGTGATGCCA+AGG | 0.558029 | tig0030854:+34068 | Msa1444930:CDS |
| AGAAGATGAAGATTGAAAGA+GGG | 0.558723 | tig0030854:-33573 | None:intergenic |
| TCACCTCCTCCTTGATCTAG+TGG | 0.567569 | tig0030854:-35402 | None:intergenic |
| CTAGATCAAGGAGGAGGTGA+GGG | 0.569563 | tig0030854:+35405 | Msa1444930:CDS |
| CCTTCAGAAATTAGCAGATG+AGG | 0.570316 | tig0030854:+36059 | Msa1444930:CDS |
| GAAGAGGGGAGCTTTCAGCC+CGG | 0.571563 | tig0030854:+36007 | Msa1444930:CDS |
| TAGCTCTCAGGAAAGGAAGA+GGG | 0.571645 | tig0030854:+36412 | Msa1444930:CDS |
| CCTGAGAGCTAACCTTGTCG+TGG | 0.573304 | tig0030854:-36400 | None:intergenic |
| GTTGACAAGATCATTGAAGC+AGG | 0.573756 | tig0030854:+34090 | Msa1444930:CDS |
| GAGCTTGACAAGATATTGGA+AGG | 0.575499 | tig0030854:+34696 | Msa1444930:CDS |
| AGCTATGTACATAGATGCCG+AGG | 0.576766 | tig0030854:+35431 | Msa1444930:CDS |
| TGTATGGTGAATTTCGATCT+GGG | 0.581170 | tig0030854:+34854 | Msa1444930:CDS |
| GACTCTTACAGATAGCAGAT+AGG | 0.586304 | tig0030854:+35472 | Msa1444930:CDS |
| AGGGATTCAAAATGCGTCAG+AGG | 0.587974 | tig0030854:-33554 | None:intergenic |
| GTTTGGCTGAAGCCGAAGCA+AGG | 0.588117 | tig0030854:+36469 | Msa1444930:CDS |
| TGAAGCAGCTTCAATGATGG+TGG | 0.599232 | tig0030854:+35658 | Msa1444930:CDS |
| CTGAGGCCTAAATGTTCCCT+CGG | 0.602051 | tig0030854:-35448 | None:intergenic |
| AAGATCGAATCTTTAAACCA+TGG | 0.607413 | tig0030854:+33671 | Msa1444930:exon |
| AGTATAAGCAACAGATTCAA+CGG | 0.607715 | tig0030854:-34022 | None:intergenic |
| GTCAAGCTCTCTTGACCCGG+TGG | 0.607993 | tig0030854:-34682 | None:intergenic |
| ACAAGGTTAGCTCTCAGGAA+AGG | 0.614598 | tig0030854:+36405 | Msa1444930:CDS |
| TTCTCAGGCATCGGGTATAG+CGG | 0.620888 | tig0030854:+33960 | Msa1444930:intron |
| TTGCCACTAGATCAAGGAGG+AGG | 0.623636 | tig0030854:+35399 | Msa1444930:CDS |
| AGCTCTCAGGAAAGGAAGAG+GGG | 0.625477 | tig0030854:+36413 | Msa1444930:CDS |
| ACTAGATCAAGGAGGAGGTG+AGG | 0.625647 | tig0030854:+35404 | Msa1444930:CDS |
| GATAACGATAGTTTGTTGCA+GGG | 0.629808 | tig0030854:+36685 | Msa1444930:three_prime_UTR |
| CGATTATTCAGATAACCACC+GGG | 0.640229 | tig0030854:+34667 | Msa1444930:CDS |
| CTAGCGCTAGTAAAACCCAT+AGG | 0.648850 | tig0030854:-34621 | None:intergenic |
| GCGATTTGTACAGTAATTGG+GGG | 0.652251 | tig0030854:-33599 | None:intergenic |
| TCGAAATTCACCATACAACT+CGG | 0.653941 | tig0030854:-34848 | None:intergenic |
| TGGCTCATGCAACCACGACA+AGG | 0.656550 | tig0030854:+36388 | Msa1444930:CDS |
| ATAACACTGATCATCAGTCA+CGG | 0.679517 | tig0030854:+35627 | Msa1444930:CDS |
| GCTATGTACATAGATGCCGA+GGG | 0.713210 | tig0030854:+35432 | Msa1444930:CDS |
| GCTATCTGTAAGAGTCGCTG+AGG | 0.720598 | tig0030854:-35465 | None:intergenic |
| GAAACCGAAGAGATTCAACA+CGG | 0.755894 | tig0030854:+33735 | Msa1444930:CDS |
| TAGTTGCCACTAGATCAAGG+AGG | 0.810196 | tig0030854:+35396 | Msa1444930:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAAATTAGAAATAAT+GGG | - | tig0030854:33834-33853 | None:intergenic | 10.0% |
| !! | TAAAAAGAAATTAGAAATAA+TGG | - | tig0030854:33835-33854 | None:intergenic | 10.0% |
| !!! | ATTATTTCTAATTTCTTTTT+AGG | + | tig0030854:33834-33853 | Msa1444930:intron | 10.0% |
| !! | CAAAAAAATTATATCATTCA+AGG | - | tig0030854:36558-36577 | None:intergenic | 15.0% |
| !!! | TTCACTTTCAATTTTGTTTT+AGG | + | tig0030854:34119-34138 | Msa1444930:intron | 20.0% |
| !!! | TCACTTTCAATTTTGTTTTA+GGG | + | tig0030854:34120-34139 | Msa1444930:intron | 20.0% |
| !!! | TTTTAATAAGCTCTTTAGAA+TGG | + | tig0030854:34375-34394 | Msa1444930:intron | 20.0% |
| !! | ATAACCACTTATATGATAAA+TGG | + | tig0030854:34451-34470 | Msa1444930:intron | 20.0% |
| !! | ATAACCATTTATCATATAAG+TGG | - | tig0030854:34458-34477 | None:intergenic | 20.0% |
| !!! | ATAAATACTTTGTTTATGTG+TGG | + | tig0030854:34733-34752 | Msa1444930:intron | 20.0% |
| !!! | TAAATACTTTGTTTATGTGT+GGG | + | tig0030854:34734-34753 | Msa1444930:intron | 20.0% |
| !! | GTTTGAGTATTTGTATATAT+AGG | + | tig0030854:35014-35033 | Msa1444930:intron | 20.0% |
| !! | AAAATAACTAAAATAGTCCA+GGG | + | tig0030854:35200-35219 | Msa1444930:intron | 20.0% |
| !! | TAAGGAACATAAATATTGAA+TGG | - | tig0030854:35545-35564 | None:intergenic | 20.0% |
| !!! | AGATTTTTTTATACTAGTGA+TGG | + | tig0030854:35853-35872 | Msa1444930:intron | 20.0% |
| !!! | AGATATTGAAATTGTTTTTG+AGG | + | tig0030854:35902-35921 | Msa1444930:intron | 20.0% |
| !! | ACATATAAACATAATCAGTT+TGG | + | tig0030854:36232-36251 | Msa1444930:intron | 20.0% |
| !!! | TTTTTTGCACTTTGAACAAT+CGG | - | tig0030854:33865-33884 | None:intergenic | 25.0% |
| ! | AACAACGATAATAGTCAATT+GGG | - | tig0030854:33915-33934 | None:intergenic | 25.0% |
| !! | AAAGATCTTTTGCAAATCAA+AGG | + | tig0030854:34051-34070 | Msa1444930:CDS | 25.0% |
| !!! | ATTTTGTTTTAGGGTCTATT+TGG | + | tig0030854:34129-34148 | Msa1444930:intron | 25.0% |
| !! | CTAAGTTGAAAAAAGCTTAT+TGG | - | tig0030854:34223-34242 | None:intergenic | 25.0% |
| !!! | TAAGCTTTTTTCAACTTAGT+AGG | + | tig0030854:34224-34243 | Msa1444930:intron | 25.0% |
| !!! | AAGCTTTTTTCAACTTAGTA+GGG | + | tig0030854:34225-34244 | Msa1444930:intron | 25.0% |
| !!! | ACTTATGTTGTTTTCATGTA+AGG | - | tig0030854:34252-34271 | None:intergenic | 25.0% |
| !! | AAACAACATAAGTTCTTTTC+AGG | + | tig0030854:34259-34278 | Msa1444930:intron | 25.0% |
| !! | AACAACATAAGTTCTTTTCA+GGG | + | tig0030854:34260-34279 | Msa1444930:intron | 25.0% |
| ! | GATTAACATAATCAATTGTG+AGG | + | tig0030854:34307-34326 | Msa1444930:intron | 25.0% |
| !! | AAGTGCTTTATTAAGTTGTT+TGG | + | tig0030854:34483-34502 | Msa1444930:intron | 25.0% |
| ! | AATTACATGAATTGAGTGTT+TGG | - | tig0030854:34509-34528 | None:intergenic | 25.0% |
| !!! | TATATATTGCTGTTTCAATC+AGG | + | tig0030854:34802-34821 | Msa1444930:intron | 25.0% |
| ! | TGTATATATAGGAGAATACA+AGG | + | tig0030854:35025-35044 | Msa1444930:intron | 25.0% |
| ! | TTGAGAAAATAAGACAGAAT+AGG | - | tig0030854:35141-35160 | None:intergenic | 25.0% |
| !!! | TTACAGTTCATTCAAGTTTT+TGG | + | tig0030854:35172-35191 | Msa1444930:intron | 25.0% |
| !!! | TACAGTTCATTCAAGTTTTT+GGG | + | tig0030854:35173-35192 | Msa1444930:intron | 25.0% |
| !!! | CTGGACTATTTTAGTTATTT+TGG | - | tig0030854:35201-35220 | None:intergenic | 25.0% |
| ! | CAAAATAACTAAAATAGTCC+AGG | + | tig0030854:35199-35218 | Msa1444930:intron | 25.0% |
| ! | AAATAACTAAAATAGTCCAG+GGG | + | tig0030854:35201-35220 | Msa1444930:intron | 25.0% |
| ! | AATTACTAGGCAATGTTATT+AGG | - | tig0030854:35357-35376 | None:intergenic | 25.0% |
| ! | ATAAAGCCATATTATAACCT+TGG | - | tig0030854:35743-35762 | None:intergenic | 25.0% |
| ! | TTGCTTAGGATAGTAAATTT+AGG | + | tig0030854:36185-36204 | Msa1444930:intron | 25.0% |
| ! | TTGATTGTGTAATTGTAGTT+TGG | + | tig0030854:36270-36289 | Msa1444930:intron | 25.0% |
| ! | TTACAATTACAACTAGCAAA+AGG | - | tig0030854:36593-36612 | None:intergenic | 25.0% |
| AGAAGATGAAGATTGAAAGA+GGG | - | tig0030854:33576-33595 | None:intergenic | 30.0% | |
| AAGAAGATGAAGATTGAAAG+AGG | - | tig0030854:33577-33596 | None:intergenic | 30.0% | |
| TTGCGATTTGTACAGTAATT+GGG | - | tig0030854:33604-33623 | None:intergenic | 30.0% | |
| ATTGCGATTTGTACAGTAAT+TGG | - | tig0030854:33605-33624 | None:intergenic | 30.0% | |
| !!! | CTTTTTTCGAAGAGGAATTA+CGG | - | tig0030854:33654-33673 | None:intergenic | 30.0% |
| AAGATCGAATCTTTAAACCA+TGG | + | tig0030854:33671-33690 | Msa1444930:exon | 30.0% | |
| ATTAACCTGAAGTTGTTCTA+CGG | - | tig0030854:33769-33788 | None:intergenic | 30.0% | |
| ! | TAGAACAACTTCAGGTTAAT+GGG | + | tig0030854:33769-33788 | Msa1444930:intron | 30.0% |
| ! | TTTTTGCACTTTGAACAATC+GGG | - | tig0030854:33864-33883 | None:intergenic | 30.0% |
| CAACAACGATAATAGTCAAT+TGG | - | tig0030854:33916-33935 | None:intergenic | 30.0% | |
| CTGTGTTTAATTGTATTCTC+AGG | + | tig0030854:33945-33964 | Msa1444930:intron | 30.0% | |
| TTAATTGTATTCTCAGGCAT+CGG | + | tig0030854:33951-33970 | Msa1444930:intron | 30.0% | |
| ATTAAGAAGCTTAAAGATGC+AGG | + | tig0030854:33991-34010 | Msa1444930:CDS | 30.0% | |
| AGTATAAGCAACAGATTCAA+CGG | - | tig0030854:34025-34044 | None:intergenic | 30.0% | |
| ATTTGCAAAAGATCTTTCCT+AGG | - | tig0030854:34048-34067 | None:intergenic | 30.0% | |
| !!! | TTTCAGGGTCCTTTATTTTT+AGG | + | tig0030854:34275-34294 | Msa1444930:intron | 30.0% |
| CAAACAGAGCCTAAAAATAA+AGG | - | tig0030854:34287-34306 | None:intergenic | 30.0% | |
| !!! | CTTTATTTTTAGGCTCTGTT+TGG | + | tig0030854:34285-34304 | Msa1444930:intron | 30.0% |
| AATAAGCTGAAAACAGCTTA+TGG | - | tig0030854:34357-34376 | None:intergenic | 30.0% | |
| TTAATACCCATCATTGATGA+AGG | + | tig0030854:34542-34561 | Msa1444930:intron | 30.0% | |
| TTTGTTTGTTTATTGACAGC+TGG | + | tig0030854:34588-34607 | Msa1444930:intron | 30.0% | |
| ATTGTAGAAGAGGAAATTCT+TGG | + | tig0030854:35100-35119 | Msa1444930:intron | 30.0% | |
| CAACGATGAATTGAATTACT+AGG | - | tig0030854:35370-35389 | None:intergenic | 30.0% | |
| AATGGACATTTAACAGAAAC+AGG | - | tig0030854:35527-35546 | None:intergenic | 30.0% | |
| TTTATGTTCCTTAATACGAC+AGG | + | tig0030854:35552-35571 | Msa1444930:intron | 30.0% | |
| TCTAAACAATACTGAGCAAA+AGG | - | tig0030854:35709-35728 | None:intergenic | 30.0% | |
| CAATTGCCAAGGTTATAATA+TGG | + | tig0030854:35734-35753 | Msa1444930:intron | 30.0% | |
| AAATCTTACAATACAACGCA+AGG | - | tig0030854:35839-35858 | None:intergenic | 30.0% | |
| !!! | TTTTGAGGCTTACATTTTGA+TGG | + | tig0030854:35917-35936 | Msa1444930:intron | 30.0% |
| AGCTGATTAAGATATTGCTT+AGG | + | tig0030854:36171-36190 | Msa1444930:intron | 30.0% | |
| ! | TAAAATCTGAAACCTTGCTT+CGG | - | tig0030854:36484-36503 | None:intergenic | 30.0% |
| ! | TCTGCAATAATGTTGAGTTT+TGG | + | tig0030854:36643-36662 | Msa1444930:three_prime_UTR | 30.0% |
| TGCGATTTGTACAGTAATTG+GGG | - | tig0030854:33603-33622 | None:intergenic | 35.0% | |
| !!! | GATTCGATCTTTTTTCGAAG+AGG | - | tig0030854:33662-33681 | None:intergenic | 35.0% |
| TTAACCTGAAGTTGTTCTAC+GGG | - | tig0030854:33768-33787 | None:intergenic | 35.0% | |
| ! | GTAGAACAACTTCAGGTTAA+TGG | + | tig0030854:33768-33787 | Msa1444930:intron | 35.0% |
| !!! | AACCCTTTTTTCTCTGATGA+TGG | + | tig0030854:33885-33904 | Msa1444930:intron | 35.0% |
| CTCCATCATCAGAGAAAAAA+GGG | - | tig0030854:33890-33909 | None:intergenic | 35.0% | |
| TAATTGTATTCTCAGGCATC+GGG | + | tig0030854:33952-33971 | Msa1444930:intron | 35.0% | |
| ! | AATCTGTTGCTTATACTCCT+AGG | + | tig0030854:34028-34047 | Msa1444930:CDS | 35.0% |
| TTCAATGATCTTGTCAACCT+TGG | - | tig0030854:34088-34107 | None:intergenic | 35.0% | |
| AGAAGACCTTCATCAATGAT+GGG | - | tig0030854:34551-34570 | None:intergenic | 35.0% | |
| TCGATTATTCAGATAACCAC+CGG | + | tig0030854:34666-34685 | Msa1444930:CDS | 35.0% | |
| AAGAGAGCTTGACAAGATAT+TGG | + | tig0030854:34692-34711 | Msa1444930:CDS | 35.0% | |
| TTGACAAGATATTGGAAGGT+TGG | + | tig0030854:34700-34719 | Msa1444930:intron | 35.0% | |
| !! | ATATTGCTGTTTCAATCAGG+TGG | + | tig0030854:34805-34824 | Msa1444930:intron | 35.0% |
| TCGAAATTCACCATACAACT+CGG | - | tig0030854:34851-34870 | None:intergenic | 35.0% | |
| TTGTATGGTGAATTTCGATC+TGG | + | tig0030854:34853-34872 | Msa1444930:CDS | 35.0% | |
| TGTATGGTGAATTTCGATCT+GGG | + | tig0030854:34854-34873 | Msa1444930:CDS | 35.0% | |
| AGGGAAACAAACAACATACT+TGG | - | tig0030854:34915-34934 | None:intergenic | 35.0% | |
| !! | CAAGAGGTATTGACACAAAA+GGG | - | tig0030854:34934-34953 | None:intergenic | 35.0% |
| !! | ACAAGAGGTATTGACACAAA+AGG | - | tig0030854:34935-34954 | None:intergenic | 35.0% |
| TAGTGACTCTATTGTAGAAG+AGG | + | tig0030854:35090-35109 | Msa1444930:intron | 35.0% | |
| ATGTCTATTTACATTTCCCC+TGG | - | tig0030854:35220-35239 | None:intergenic | 35.0% | |
| ATAACACTGATCATCAGTCA+CGG | + | tig0030854:35627-35646 | Msa1444930:CDS | 35.0% | |
| ! | AAACAAGGTATGACTTTTGC+TGG | + | tig0030854:35681-35700 | Msa1444930:intron | 35.0% |
| TGCTCAGTATTGTTTAGATC+TGG | + | tig0030854:35711-35730 | Msa1444930:intron | 35.0% | |
| AGCATTATTACCAGCTAAAC+AGG | + | tig0030854:35784-35803 | Msa1444930:intron | 35.0% | |
| ACAACGCAAGGCATAATAAA+TGG | - | tig0030854:35827-35846 | None:intergenic | 35.0% | |
| AGTGATGGTTGATCTGAATT+TGG | + | tig0030854:35868-35887 | Msa1444930:intron | 35.0% | |
| !! | CATTTTGATGGCTTATATGC+AGG | + | tig0030854:35929-35948 | Msa1444930:intron | 35.0% |
| ! | CTCTATAGGACAGATTTTTC+CGG | + | tig0030854:35985-36004 | Msa1444930:CDS | 35.0% |
| ATTTCGCTAAATGCATTTGC+CGG | - | tig0030854:36029-36048 | None:intergenic | 35.0% | |
| TGTGCATTACAATAGTGACA+TGG | - | tig0030854:36093-36112 | None:intergenic | 35.0% | |
| ! | TGTGTAATTGTAGTTTGGTG+TGG | + | tig0030854:36275-36294 | Msa1444930:intron | 35.0% |
| ! | CAAGTAGTTTCACAAGTTGA+CGG | + | tig0030854:36315-36334 | Msa1444930:CDS | 35.0% |
| ! | AGTGATTAGTTCTCCTTGTT+TGG | + | tig0030854:36452-36471 | Msa1444930:CDS | 35.0% |
| ! | GAAGCAAGGTTTCAGATTTT+AGG | + | tig0030854:36483-36502 | Msa1444930:CDS | 35.0% |
| GGTTCAGACAATGCTAAAAT+TGG | - | tig0030854:36537-36556 | None:intergenic | 35.0% | |
| !! | TGATAACGATAGTTTGTTGC+AGG | + | tig0030854:36684-36703 | Msa1444930:three_prime_UTR | 35.0% |
| !! | GATAACGATAGTTTGTTGCA+GGG | + | tig0030854:36685-36704 | Msa1444930:three_prime_UTR | 35.0% |
| GCGATTTGTACAGTAATTGG+GGG | - | tig0030854:33602-33621 | None:intergenic | 40.0% | |
| GTTGAATCTCTTCGGTTTCT+TGG | - | tig0030854:33734-33753 | None:intergenic | 40.0% | |
| GAAACCGAAGAGATTCAACA+CGG | + | tig0030854:33735-33754 | Msa1444930:CDS | 40.0% | |
| TGAAGTTGTTCTACGGGTAA+AGG | - | tig0030854:33762-33781 | None:intergenic | 40.0% | |
| TTTACCCGTAGAACAACTTC+AGG | + | tig0030854:33761-33780 | Msa1444930:CDS | 40.0% | |
| CCTCCATCATCAGAGAAAAA+AGG | - | tig0030854:33891-33910 | None:intergenic | 40.0% | |
| !!! | CCTTTTTTCTCTGATGATGG+AGG | + | tig0030854:33888-33907 | Msa1444930:intron | 40.0% |
| GTTGACAAGATCATTGAAGC+AGG | + | tig0030854:34090-34109 | Msa1444930:CDS | 40.0% | |
| CAGAAGACCTTCATCAATGA+TGG | - | tig0030854:34552-34571 | None:intergenic | 40.0% | |
| TTTATTGACAGCTGGTAAGC+TGG | + | tig0030854:34596-34615 | Msa1444930:intron | 40.0% | |
| CGATTATTCAGATAACCACC+GGG | + | tig0030854:34667-34686 | Msa1444930:CDS | 40.0% | |
| GAGCTTGACAAGATATTGGA+AGG | + | tig0030854:34696-34715 | Msa1444930:CDS | 40.0% | |
| TCAATCAGGTGGAATTGAGA+CGG | + | tig0030854:34816-34835 | Msa1444930:intron | 40.0% | |
| !! | GTAGAAAGCACTAGAACAAG+AGG | - | tig0030854:34950-34969 | None:intergenic | 40.0% |
| TTCTAGTGCTTTCTACCAAG+TGG | + | tig0030854:34954-34973 | Msa1444930:intron | 40.0% | |
| !! | CTACCAAGTGGTAACTTGTT+AGG | + | tig0030854:34966-34985 | Msa1444930:intron | 40.0% |
| TCTCCTAACAAGTTACCACT+TGG | - | tig0030854:34972-34991 | None:intergenic | 40.0% | |
| GTAGAAGAGGAAATTCTTGG+AGG | + | tig0030854:35103-35122 | Msa1444930:intron | 40.0% | |
| TTGTAGTTGCCACTAGATCA+AGG | + | tig0030854:35393-35412 | Msa1444930:intron | 40.0% | |
| GACTCTTACAGATAGCAGAT+AGG | + | tig0030854:35472-35491 | Msa1444930:CDS | 40.0% | |
| GTTCCTTAATACGACAGGTT+TGG | + | tig0030854:35557-35576 | Msa1444930:intron | 40.0% | |
| AGTCCAAACCTGTCGTATTA+AGG | - | tig0030854:35563-35582 | None:intergenic | 40.0% | |
| ACTGAATGGTCCTGATGTAT+TGG | + | tig0030854:35580-35599 | Msa1444930:CDS | 40.0% | |
| ! | GCGACATTTTCCAATACATC+AGG | - | tig0030854:35593-35612 | None:intergenic | 40.0% |
| ACTTGAAGCAGCTTCAATGA+TGG | + | tig0030854:35655-35674 | Msa1444930:CDS | 40.0% | |
| !! | CTTCAATGATGGTGGAAACA+AGG | + | tig0030854:35666-35685 | Msa1444930:CDS | 40.0% |
| TTTAGATCTGGCAATTGCCA+AGG | + | tig0030854:35723-35742 | Msa1444930:intron | 40.0% | |
| TATTACCAGCTAAACAGGCT+AGG | + | tig0030854:35789-35808 | Msa1444930:intron | 40.0% | |
| TAAAACCTAGCCTGTTTAGC+TGG | - | tig0030854:35797-35816 | None:intergenic | 40.0% | |
| TTTCGCTAAATGCATTTGCC+GGG | - | tig0030854:36028-36047 | None:intergenic | 40.0% | |
| ! | CTAATTTCTGAAGGCTTCTC+AGG | - | tig0030854:36053-36072 | None:intergenic | 40.0% |
| CCTCATCTGCTAATTTCTGA+AGG | - | tig0030854:36062-36081 | None:intergenic | 40.0% | |
| CCTTCAGAAATTAGCAGATG+AGG | + | tig0030854:36059-36078 | Msa1444930:CDS | 40.0% | |
| CGTCAACTTGTGAAACTACT+TGG | - | tig0030854:36317-36336 | None:intergenic | 40.0% | |
| ! | AGGTTTCAGATTTTAGGCGA+AGG | + | tig0030854:36489-36508 | Msa1444930:CDS | 40.0% |
| ! | GGTTTCAGATTTTAGGCGAA+GGG | + | tig0030854:36490-36509 | Msa1444930:CDS | 40.0% |
| ! | GTTTCAGATTTTAGGCGAAG+GGG | + | tig0030854:36491-36510 | Msa1444930:CDS | 40.0% |
| AGGGATTCAAAATGCGTCAG+AGG | - | tig0030854:33557-33576 | None:intergenic | 45.0% | |
| AGGACCGTGTTGAATCTCTT+CGG | - | tig0030854:33742-33761 | None:intergenic | 45.0% | |
| !! | CAAAGGTATCAGTGATGCCA+AGG | + | tig0030854:34068-34087 | Msa1444930:CDS | 45.0% |
| ATGAAGGTCTTCTGAGTCTG+TGG | + | tig0030854:34558-34577 | Msa1444930:intron | 45.0% | |
| CTAGCGCTAGTAAAACCCAT+AGG | - | tig0030854:34624-34643 | None:intergenic | 45.0% | |
| CAATCAGGTGGAATTGAGAC+GGG | + | tig0030854:34817-34836 | Msa1444930:intron | 45.0% | |
| GGTTCTATCACCGAGTTGTA+TGG | + | tig0030854:34838-34857 | Msa1444930:CDS | 45.0% | |
| TAGTTGCCACTAGATCAAGG+AGG | + | tig0030854:35396-35415 | Msa1444930:intron | 45.0% | |
| AGCTATGTACATAGATGCCG+AGG | + | tig0030854:35431-35450 | Msa1444930:CDS | 45.0% | |
| GCTATGTACATAGATGCCGA+GGG | + | tig0030854:35432-35451 | Msa1444930:CDS | 45.0% | |
| TAGATGCCGAGGGAACATTT+AGG | + | tig0030854:35442-35461 | Msa1444930:CDS | 45.0% | |
| TACGACAGGTTTGGACTGAA+TGG | + | tig0030854:35566-35585 | Msa1444930:intron | 45.0% | |
| TGAAGCAGCTTCAATGATGG+TGG | + | tig0030854:35658-35677 | Msa1444930:CDS | 45.0% | |
| ! | ACAGTGCTACTGCTCTCTAT+AGG | + | tig0030854:35971-35990 | Msa1444930:CDS | 45.0% |
| ! | AGGACAGATTTTTCCGGAAG+AGG | + | tig0030854:35991-36010 | Msa1444930:CDS | 45.0% |
| ! | GGACAGATTTTTCCGGAAGA+GGG | + | tig0030854:35992-36011 | Msa1444930:CDS | 45.0% |
| ! | GACAGATTTTTCCGGAAGAG+GGG | + | tig0030854:35993-36012 | Msa1444930:CDS | 45.0% |
| AATGTTGCCACCAATTGGCT+TGG | - | tig0030854:36367-36386 | None:intergenic | 45.0% | |
| ! | GCCAATTGGTGGCAACATTA+TGG | + | tig0030854:36368-36387 | Msa1444930:CDS | 45.0% |
| GCCATAATGTTGCCACCAAT+TGG | - | tig0030854:36372-36391 | None:intergenic | 45.0% | |
| ! | ACAAGGTTAGCTCTCAGGAA+AGG | + | tig0030854:36405-36424 | Msa1444930:CDS | 45.0% |
| ! | TTAGCTCTCAGGAAAGGAAG+AGG | + | tig0030854:36411-36430 | Msa1444930:CDS | 45.0% |
| TAGCTCTCAGGAAAGGAAGA+GGG | + | tig0030854:36412-36431 | Msa1444930:CDS | 45.0% | |
| ! | GATTTTAGGCGAAGGGGTTT+CGG | + | tig0030854:36497-36516 | Msa1444930:CDS | 45.0% |
| CTCAAGTCGTTGTTGCTCCA+TGG | - | tig0030854:33691-33710 | None:intergenic | 50.0% | |
| !! | TTCTCAGGCATCGGGTATAG+CGG | + | tig0030854:33960-33979 | Msa1444930:intron | 50.0% |
| CTTGTCAAGCTCTCTTGACC+CGG | - | tig0030854:34688-34707 | None:intergenic | 50.0% | |
| TTGCCACTAGATCAAGGAGG+AGG | + | tig0030854:35399-35418 | Msa1444930:CDS | 50.0% | |
| TCACCTCCTCCTTGATCTAG+TGG | - | tig0030854:35405-35424 | None:intergenic | 50.0% | |
| ACTAGATCAAGGAGGAGGTG+AGG | + | tig0030854:35404-35423 | Msa1444930:CDS | 50.0% | |
| CTAGATCAAGGAGGAGGTGA+GGG | + | tig0030854:35405-35424 | Msa1444930:CDS | 50.0% | |
| CTGAGGCCTAAATGTTCCCT+CGG | - | tig0030854:35451-35470 | None:intergenic | 50.0% | |
| GCTATCTGTAAGAGTCGCTG+AGG | - | tig0030854:35468-35487 | None:intergenic | 50.0% | |
| GACGGTTCTGCAATGTTTGC+TGG | + | tig0030854:36333-36352 | Msa1444930:CDS | 50.0% | |
| !! | CCACCAATTGGCTTGGTTTG+GGG | - | tig0030854:36360-36379 | None:intergenic | 50.0% |
| !! | GCCACCAATTGGCTTGGTTT+GGG | - | tig0030854:36361-36380 | None:intergenic | 50.0% |
| !! | TGCCACCAATTGGCTTGGTT+TGG | - | tig0030854:36362-36381 | None:intergenic | 50.0% |
| AGCTCTCAGGAAAGGAAGAG+GGG | + | tig0030854:36413-36432 | Msa1444930:CDS | 50.0% | |
| AGCTGGTAAGCTGGTGCCTA+TGG | + | tig0030854:34605-34624 | Msa1444930:intron | 55.0% | |
| GCTGGTAAGCTGGTGCCTAT+GGG | + | tig0030854:34606-34625 | Msa1444930:intron | 55.0% | |
| GGACCCCAAACCAAGCCAAT+TGG | + | tig0030854:36354-36373 | Msa1444930:CDS | 55.0% | |
| CCCCAAACCAAGCCAATTGG+TGG | + | tig0030854:36357-36376 | Msa1444930:CDS | 55.0% | |
| TGGCTCATGCAACCACGACA+AGG | + | tig0030854:36388-36407 | Msa1444930:CDS | 55.0% | |
| CCTGAGAGCTAACCTTGTCG+TGG | - | tig0030854:36403-36422 | None:intergenic | 55.0% | |
| ! | CCACGACAAGGTTAGCTCTC+AGG | + | tig0030854:36400-36419 | Msa1444930:CDS | 55.0% |
| GCTTCGGCTTCAGCCAAACA+AGG | - | tig0030854:36468-36487 | None:intergenic | 55.0% | |
| GTTTGGCTGAAGCCGAAGCA+AGG | + | tig0030854:36469-36488 | Msa1444930:CDS | 55.0% | |
| GTCAAGCTCTCTTGACCCGG+TGG | - | tig0030854:34685-34704 | None:intergenic | 60.0% | |
| GGCTGAAAGCTCCCCTCTTC+CGG | - | tig0030854:36007-36026 | None:intergenic | 60.0% | |
| GAAGAGGGGAGCTTTCAGCC+CGG | + | tig0030854:36007-36026 | Msa1444930:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030854 | gene | 33538 | 36758 | 33538 | ID=Msa1444930;Name=Msa1444930 |
| tig0030854 | mRNA | 33538 | 36758 | 33538 | ID=Msa1444930-mRNA-1;Parent=Msa1444930;Name=Msa1444930-mRNA-1;_AED=0.03;_eAED=0.03;_QI=152|1|1|1|1|1|8|225|341 |
| tig0030854 | exon | 33538 | 33782 | 33538 | ID=Msa1444930-mRNA-1:exon:14682;Parent=Msa1444930-mRNA-1 |
| tig0030854 | exon | 33967 | 34111 | 33967 | ID=Msa1444930-mRNA-1:exon:14683;Parent=Msa1444930-mRNA-1 |
| tig0030854 | exon | 34607 | 34717 | 34607 | ID=Msa1444930-mRNA-1:exon:14684;Parent=Msa1444930-mRNA-1 |
| tig0030854 | exon | 34824 | 34915 | 34824 | ID=Msa1444930-mRNA-1:exon:14685;Parent=Msa1444930-mRNA-1 |
| tig0030854 | exon | 35399 | 35493 | 35399 | ID=Msa1444930-mRNA-1:exon:14686;Parent=Msa1444930-mRNA-1 |
| tig0030854 | exon | 35574 | 35687 | 35574 | ID=Msa1444930-mRNA-1:exon:14687;Parent=Msa1444930-mRNA-1 |
| tig0030854 | exon | 35951 | 36080 | 35951 | ID=Msa1444930-mRNA-1:exon:14688;Parent=Msa1444930-mRNA-1 |
| tig0030854 | exon | 36288 | 36758 | 36288 | ID=Msa1444930-mRNA-1:exon:14689;Parent=Msa1444930-mRNA-1 |
| tig0030854 | five_prime_UTR | 33538 | 33689 | 33538 | ID=Msa1444930-mRNA-1:five_prime_utr;Parent=Msa1444930-mRNA-1 |
| tig0030854 | CDS | 33690 | 33782 | 33690 | ID=Msa1444930-mRNA-1:cds;Parent=Msa1444930-mRNA-1 |
| tig0030854 | CDS | 33967 | 34111 | 33967 | ID=Msa1444930-mRNA-1:cds;Parent=Msa1444930-mRNA-1 |
| tig0030854 | CDS | 34607 | 34717 | 34607 | ID=Msa1444930-mRNA-1:cds;Parent=Msa1444930-mRNA-1 |
| tig0030854 | CDS | 34824 | 34915 | 34824 | ID=Msa1444930-mRNA-1:cds;Parent=Msa1444930-mRNA-1 |
| tig0030854 | CDS | 35399 | 35493 | 35399 | ID=Msa1444930-mRNA-1:cds;Parent=Msa1444930-mRNA-1 |
| tig0030854 | CDS | 35574 | 35687 | 35574 | ID=Msa1444930-mRNA-1:cds;Parent=Msa1444930-mRNA-1 |
| tig0030854 | CDS | 35951 | 36080 | 35951 | ID=Msa1444930-mRNA-1:cds;Parent=Msa1444930-mRNA-1 |
| tig0030854 | CDS | 36288 | 36533 | 36288 | ID=Msa1444930-mRNA-1:cds;Parent=Msa1444930-mRNA-1 |
| tig0030854 | three_prime_UTR | 36534 | 36758 | 36534 | ID=Msa1444930-mRNA-1:three_prime_utr;Parent=Msa1444930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
