Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461260 | XP_003596984.2 | 96.748 | 123 | 3 | 1 | 1 | 122 | 1 | 123 | 7.21e-78 | 235 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461260 | G7ITZ1 | 96.748 | 123 | 3 | 1 | 1 | 122 | 1 | 123 | 3.44e-78 | 235 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa1461260 | 0.820602 | 6.290343e-53 | -8.615850e-47 |
| Msa0027800 | Msa1461260 | 0.805718 | 1.165962e-49 | -8.615850e-47 |
| Msa0030070 | Msa1461260 | 0.844693 | 6.456285e-59 | -8.615850e-47 |
| Msa0032230 | Msa1461260 | 0.817675 | 2.915263e-52 | -8.615850e-47 |
| Msa0033610 | Msa1461260 | 0.801800 | 7.589710e-49 | -8.615850e-47 |
| Msa0037660 | Msa1461260 | 0.807905 | 4.021926e-50 | -8.615850e-47 |
| Msa0045620 | Msa1461260 | 0.803596 | 3.232794e-49 | -8.615850e-47 |
| Msa0050150 | Msa1461260 | 0.836000 | 1.209329e-56 | -8.615850e-47 |
| Msa0050530 | Msa1461260 | 0.856251 | 3.650605e-62 | -8.615850e-47 |
| Msa0078130 | Msa1461260 | 0.815422 | 9.318995e-52 | -8.615850e-47 |
| Msa0089540 | Msa1461260 | 0.801373 | 9.285405e-49 | -8.615850e-47 |
| Msa0093210 | Msa1461260 | 0.830155 | 3.444071e-55 | -8.615850e-47 |
| Msa0100600 | Msa1461260 | 0.867107 | 1.746301e-65 | -8.615850e-47 |
| Msa0100890 | Msa1461260 | 0.839920 | 1.187170e-57 | -8.615850e-47 |
| Msa0109730 | Msa1461260 | 0.800927 | 1.145460e-48 | -8.615850e-47 |
| Msa1371800 | Msa1461260 | 0.804754 | 1.856147e-49 | -8.615850e-47 |
| Msa1376310 | Msa1461260 | 0.804981 | 1.664125e-49 | -8.615850e-47 |
| Msa1379940 | Msa1461260 | 0.821171 | 4.652010e-53 | -8.615850e-47 |
| Msa1381330 | Msa1461260 | 0.801074 | 1.069033e-48 | -8.615850e-47 |
| Msa1387500 | Msa1461260 | 0.838410 | 2.924143e-57 | -8.615850e-47 |
| Msa1393560 | Msa1461260 | 0.823263 | 1.522069e-53 | -8.615850e-47 |
| Msa1399190 | Msa1461260 | 0.835363 | 1.752954e-56 | -8.615850e-47 |
| Msa1413020 | Msa1461260 | 0.827419 | 1.581307e-54 | -8.615850e-47 |
| Msa1426320 | Msa1461260 | 0.801681 | 8.029078e-49 | -8.615850e-47 |
| Msa1428690 | Msa1461260 | 0.823007 | 1.746360e-53 | -8.615850e-47 |
| Msa1435100 | Msa1461260 | 0.839753 | 1.312467e-57 | -8.615850e-47 |
| Msa1439730 | Msa1461260 | 0.841136 | 5.704370e-58 | -8.615850e-47 |
| Msa1444930 | Msa1461260 | 0.823442 | 1.382303e-53 | -8.615850e-47 |
| Msa0618840 | Msa1461260 | 0.821983 | 3.020269e-53 | -8.615850e-47 |
| Msa0618990 | Msa1461260 | 0.843898 | 1.055472e-58 | -8.615850e-47 |
| Msa0620500 | Msa1461260 | 0.806195 | 9.254947e-50 | -8.615850e-47 |
| Msa0620510 | Msa1461260 | 0.830193 | 3.370021e-55 | -8.615850e-47 |
| Msa0623310 | Msa1461260 | 0.804248 | 2.366005e-49 | -8.615850e-47 |
| Msa0625620 | Msa1461260 | 0.822624 | 2.144622e-53 | -8.615850e-47 |
| Msa0640800 | Msa1461260 | 0.864931 | 8.523227e-65 | -8.615850e-47 |
| Msa0647440 | Msa1461260 | 0.819796 | 9.621528e-53 | -8.615850e-47 |
| Msa0659200 | Msa1461260 | 0.804270 | 2.342017e-49 | -8.615850e-47 |
| Msa0663290 | Msa1461260 | 0.826817 | 2.202607e-54 | -8.615850e-47 |
| Msa0664070 | Msa1461260 | 0.823043 | 1.712956e-53 | -8.615850e-47 |
| Msa0689830 | Msa1461260 | 0.823345 | 1.455861e-53 | -8.615850e-47 |
| Msa0705180 | Msa1461260 | 0.817174 | 3.780186e-52 | -8.615850e-47 |
| Msa0707260 | Msa1461260 | 0.846873 | 1.652094e-59 | -8.615850e-47 |
| Msa0708980 | Msa1461260 | 0.832081 | 1.158797e-55 | -8.615850e-47 |
| Msa0717900 | Msa1461260 | 0.812570 | 3.967072e-51 | -8.615850e-47 |
| Msa0720280 | Msa1461260 | 0.838108 | 3.497590e-57 | -8.615850e-47 |
| Msa0737020 | Msa1461260 | 0.815917 | 7.230952e-52 | -8.615850e-47 |
| Msa0750520 | Msa1461260 | 0.801299 | 9.613692e-49 | -8.615850e-47 |
| Msa0751720 | Msa1461260 | 0.818833 | 1.594751e-52 | -8.615850e-47 |
| Msa0761830 | Msa1461260 | 0.815807 | 7.648847e-52 | -8.615850e-47 |
| Msa0767280 | Msa1461260 | 0.817085 | 3.959866e-52 | -8.615850e-47 |
| Msa0803140 | Msa1461260 | 0.841394 | 4.880084e-58 | -8.615850e-47 |
| Msa0804170 | Msa1461260 | 0.822514 | 2.274315e-53 | -8.615850e-47 |
| Msa0816080 | Msa1461260 | 0.814597 | 1.420538e-51 | -8.615850e-47 |
| Msa0816230 | Msa1461260 | 0.804588 | 2.009726e-49 | -8.615850e-47 |
| Msa0837680 | Msa1461260 | 0.824395 | 8.259532e-54 | -8.615850e-47 |
| Msa0841500 | Msa1461260 | 0.818582 | 1.818508e-52 | -8.615850e-47 |
| Msa0842180 | Msa1461260 | 0.809240 | 2.086083e-50 | -8.615850e-47 |
| Msa0125590 | Msa1461260 | 0.862238 | 5.838334e-64 | -8.615850e-47 |
| Msa0127270 | Msa1461260 | 0.837584 | 4.768746e-57 | -8.615850e-47 |
| Msa0129960 | Msa1461260 | 0.812305 | 4.533121e-51 | -8.615850e-47 |
| Msa0168380 | Msa1461260 | 0.845471 | 3.978852e-59 | -8.615850e-47 |
| Msa0170070 | Msa1461260 | 0.841555 | 4.426851e-58 | -8.615850e-47 |
| Msa0186180 | Msa1461260 | 0.805333 | 1.404480e-49 | -8.615850e-47 |
| Msa0192050 | Msa1461260 | 0.811276 | 7.592397e-51 | -8.615850e-47 |
| Msa0194630 | Msa1461260 | 0.807483 | 4.944230e-50 | -8.615850e-47 |
| Msa0204970 | Msa1461260 | 0.810450 | 1.145992e-50 | -8.615850e-47 |
| Msa0225800 | Msa1461260 | 0.800861 | 1.181481e-48 | -8.615850e-47 |
| Msa0236820 | Msa1461260 | 0.830567 | 2.731645e-55 | -8.615850e-47 |
| Msa1254420 | Msa1461260 | 0.804096 | 2.544959e-49 | -8.615850e-47 |
| Msa1266620 | Msa1461260 | 0.821600 | 3.703699e-53 | -8.615850e-47 |
| Msa1267150 | Msa1461260 | 0.825192 | 5.360160e-54 | -8.615850e-47 |
| Msa1294280 | Msa1461260 | 0.836115 | 1.130562e-56 | -8.615850e-47 |
| Msa1294790 | Msa1461260 | 0.802275 | 6.059683e-49 | -8.615850e-47 |
| Msa1301820 | Msa1461260 | 0.819627 | 1.051663e-52 | -8.615850e-47 |
| Msa1301830 | Msa1461260 | 0.809742 | 1.627606e-50 | -8.615850e-47 |
| Msa1308860 | Msa1461260 | 0.801388 | 9.220387e-49 | -8.615850e-47 |
| Msa1333650 | Msa1461260 | 0.832051 | 1.178643e-55 | -8.615850e-47 |
| Msa1339230 | Msa1461260 | 0.844727 | 6.321665e-59 | -8.615850e-47 |
| Msa0364680 | Msa1461260 | 0.830964 | 2.182207e-55 | -8.615850e-47 |
| Msa0373170 | Msa1461260 | 0.810342 | 1.209067e-50 | -8.615850e-47 |
| Msa0378270 | Msa1461260 | 0.816187 | 6.291591e-52 | -8.615850e-47 |
| Msa0380490 | Msa1461260 | 0.809754 | 1.618577e-50 | -8.615850e-47 |
| Msa0382230 | Msa1461260 | 0.842687 | 2.220855e-58 | -8.615850e-47 |
| Msa0388250 | Msa1461260 | 0.812943 | 3.287649e-51 | -8.615850e-47 |
| Msa0388620 | Msa1461260 | 0.802345 | 5.863657e-49 | -8.615850e-47 |
| Msa0415820 | Msa1461260 | 0.802002 | 6.898841e-49 | -8.615850e-47 |
| Msa0416210 | Msa1461260 | 0.847015 | 1.510484e-59 | -8.615850e-47 |
| Msa0422900 | Msa1461260 | 0.806815 | 6.847214e-50 | -8.615850e-47 |
| Msa0429970 | Msa1461260 | 0.820005 | 8.620600e-53 | -8.615850e-47 |
| Msa0433630 | Msa1461260 | 0.837940 | 3.863937e-57 | -8.615850e-47 |
| Msa0436440 | Msa1461260 | 0.803207 | 3.891013e-49 | -8.615850e-47 |
| Msa0456670 | Msa1461260 | 0.800296 | 1.540167e-48 | -8.615850e-47 |
| Msa0467690 | Msa1461260 | 0.810987 | 8.768776e-51 | -8.615850e-47 |
| Msa0468620 | Msa1461260 | 0.807378 | 5.206016e-50 | -8.615850e-47 |
| Msa0478140 | Msa1461260 | 0.801353 | 9.373180e-49 | -8.615850e-47 |
| Msa1000780 | Msa1461260 | 0.853815 | 1.861767e-61 | -8.615850e-47 |
| Msa1041370 | Msa1461260 | 0.800871 | 1.176176e-48 | -8.615850e-47 |
| Msa1049910 | Msa1461260 | 0.807567 | 4.745530e-50 | -8.615850e-47 |
| Msa1071410 | Msa1461260 | 0.805435 | 1.336724e-49 | -8.615850e-47 |
| Msa1078860 | Msa1461260 | 0.822093 | 2.847783e-53 | -8.615850e-47 |
| Msa1078990 | Msa1461260 | 0.822215 | 2.668621e-53 | -8.615850e-47 |
| Msa1081270 | Msa1461260 | 0.801488 | 8.794611e-49 | -8.615850e-47 |
| Msa0249870 | Msa1461260 | 0.806843 | 6.754168e-50 | -8.615850e-47 |
| Msa0281540 | Msa1461260 | 0.816177 | 6.325550e-52 | -8.615850e-47 |
| Msa0288400 | Msa1461260 | 0.832202 | 1.081122e-55 | -8.615850e-47 |
| Msa0314870 | Msa1461260 | 0.800846 | 1.189952e-48 | -8.615850e-47 |
| Msa0342220 | Msa1461260 | 0.827537 | 1.481226e-54 | -8.615850e-47 |
| Msa0344110 | Msa1461260 | 0.804739 | 1.869271e-49 | -8.615850e-47 |
| Msa1124210 | Msa1461260 | 0.805070 | 1.594086e-49 | -8.615850e-47 |
| Msa1169170 | Msa1461260 | 0.807187 | 5.713104e-50 | -8.615850e-47 |
| Msa1169690 | Msa1461260 | 0.829059 | 6.362349e-55 | -8.615850e-47 |
| Msa1201170 | Msa1461260 | 0.837315 | 5.588221e-57 | -8.615850e-47 |
| Msa1215980 | Msa1461260 | 0.805258 | 1.456101e-49 | -8.615850e-47 |
| Msa1215990 | Msa1461260 | 0.832103 | 1.144385e-55 | -8.615850e-47 |
| Msa1219640 | Msa1461260 | 0.828691 | 7.809297e-55 | -8.615850e-47 |
| Msa0506540 | Msa1461260 | 0.833538 | 5.034474e-56 | -8.615850e-47 |
| Msa0513640 | Msa1461260 | 0.825008 | 5.923023e-54 | -8.615850e-47 |
| Msa0514020 | Msa1461260 | 0.822567 | 2.211027e-53 | -8.615850e-47 |
| Msa0514500 | Msa1461260 | 0.804211 | 2.408377e-49 | -8.615850e-47 |
| Msa0518410 | Msa1461260 | 0.813786 | 2.146085e-51 | -8.615850e-47 |
| Msa0520680 | Msa1461260 | 0.841898 | 3.594114e-58 | -8.615850e-47 |
| Msa0521510 | Msa1461260 | 0.839073 | 1.969990e-57 | -8.615850e-47 |
| Msa0521530 | Msa1461260 | 0.804445 | 2.153096e-49 | -8.615850e-47 |
| Msa0527850 | Msa1461260 | 0.839836 | 1.248431e-57 | -8.615850e-47 |
| Msa0544410 | Msa1461260 | 0.853193 | 2.808781e-61 | -8.615850e-47 |
| Msa0544430 | Msa1461260 | 0.808379 | 3.187411e-50 | -8.615850e-47 |
| Msa0572360 | Msa1461260 | 0.819633 | 1.048240e-52 | -8.615850e-47 |
| Msa0572830 | Msa1461260 | 0.831837 | 1.330724e-55 | -8.615850e-47 |
| Msa0582460 | Msa1461260 | 0.842680 | 2.229958e-58 | -8.615850e-47 |
| Msa0584530 | Msa1461260 | 0.807832 | 4.168029e-50 | -8.615850e-47 |
| Msa0586200 | Msa1461260 | 0.837786 | 4.232082e-57 | -8.615850e-47 |
| Msa0846900 | Msa1461260 | 0.853583 | 2.171686e-61 | -8.615850e-47 |
| Msa0861440 | Msa1461260 | 0.819315 | 1.239016e-52 | -8.615850e-47 |
| Msa0880280 | Msa1461260 | 0.833879 | 4.139302e-56 | -8.615850e-47 |
| Msa0900090 | Msa1461260 | 0.820487 | 6.683300e-53 | -8.615850e-47 |
| Msa0926310 | Msa1461260 | 0.834656 | 2.642807e-56 | -8.615850e-47 |
| Msa0930040 | Msa1461260 | 0.817795 | 2.740272e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461260 | MtrunA17_Chr2g0322621 | 96.748 | 123 | 3 | 1 | 1 | 122 | 1 | 123 | 6.63e-82 | 235 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461260 | AT5G54970.1 | 44.706 | 85 | 44 | 2 | 13 | 94 | 15 | 99 | 2.83e-13 | 62.0 |
Find 49 sgRNAs with CRISPR-Local
Find 50 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGTGGTGGTGGTGAGGC+TGG | 0.218611 | tig0041406:-11483 | Msa1461260:intergenic |
| CGGAGGCGAGCTAGGGTTCC+TGG | 0.289851 | tig0041406:-11393 | Msa1461260:intergenic |
| ACCATCGGCGGCTGCGGCGG+CGG | 0.308022 | tig0041406:-11523 | Msa1461260:intergenic |
| GATCTTGGTCTTGAATCATT+TGG | 0.367487 | tig0041406:+11660 | Msa1461260:CDS |
| GGTTTCCCTTCCTTCTTCTC+CGG | 0.381260 | tig0041406:+11543 | Msa1461260:CDS |
| GCTGCTGACTCAGCAGATCT+TGG | 0.404060 | tig0041406:+11645 | Msa1461260:CDS |
| AGGTCTTGTTCTCTGCTTCA+TGG | 0.408985 | tig0041406:-11337 | Msa1461260:intergenic |
| TGGAAGTGGTTTGGTAAAGT+AGG | 0.419142 | tig0041406:-11357 | Msa1461260:intergenic |
| GGTGGTGGTGGTGAGGCTGG+TGG | 0.422166 | tig0041406:-11480 | Msa1461260:intergenic |
| TGATCGGAGGGAGGTGGTGG+TGG | 0.422451 | tig0041406:-11492 | Msa1461260:intergenic |
| GTTTCCCTTCCTTCTTCTCC+GGG | 0.422834 | tig0041406:+11544 | Msa1461260:CDS |
| TTGAGTCACGGAGGCGAGCT+AGG | 0.435623 | tig0041406:-11401 | Msa1461260:intergenic |
| AGGGAAACCATCGGCGGCTG+CGG | 0.436360 | tig0041406:-11529 | Msa1461260:intergenic |
| GCGGCTGCGGCGGCGGTTTG+AGG | 0.436624 | tig0041406:-11516 | Msa1461260:intergenic |
| GGAGTTGAGACGGTGAGATC+TGG | 0.440317 | tig0041406:-11433 | Msa1461260:intergenic |
| TCCTTCTTCTCCGGGATCTA+CGG | 0.444986 | tig0041406:+11552 | Msa1461260:CDS |
| GAGCTAGGGTTCCTGGTTTG+AGG | 0.446447 | tig0041406:-11386 | Msa1461260:intergenic |
| GGCTGATCGGAGGGAGGTGG+TGG | 0.453951 | tig0041406:-11495 | Msa1461260:intergenic |
| ACCGTAGATCCCGGAGAAGA+AGG | 0.460453 | tig0041406:-11553 | Msa1461260:intergenic |
| ACCGCCGCCGCAGCCGCCGA+TGG | 0.468049 | tig0041406:+11522 | Msa1461260:CDS |
| TTCCTGGTTTGAGGAATTTG+TGG | 0.469740 | tig0041406:-11377 | Msa1461260:intergenic |
| AGGAATTTGTGGAAGTGGTT+TGG | 0.473781 | tig0041406:-11366 | Msa1461260:intergenic |
| GTTTGAGGAATTTGTGGAAG+TGG | 0.474784 | tig0041406:-11371 | Msa1461260:intergenic |
| TCTGCTGAGTCAGCAGCAGC+AGG | 0.484937 | tig0041406:-11639 | Msa1461260:intergenic |
| CTTGGTCTTGAATCATTTGG+TGG | 0.505567 | tig0041406:+11663 | Msa1461260:CDS |
| GAAACCATCGGCGGCTGCGG+CGG | 0.505671 | tig0041406:-11526 | Msa1461260:intergenic |
| TCAGCAGCAGCAGGACTACC+AGG | 0.510522 | tig0041406:-11630 | Msa1461260:intergenic |
| TGAGGCTGATCGGAGGGAGG+TGG | 0.511381 | tig0041406:-11498 | Msa1461260:intergenic |
| GTGGTGGTGAGGCTGGTGGA+CGG | 0.514928 | tig0041406:-11476 | Msa1461260:intergenic |
| GGAGGGAGGTGGTGGTGGTG+AGG | 0.526828 | tig0041406:-11487 | Msa1461260:intergenic |
| GCGACGAGTTTCTTCCGTTG+TGG | 0.540155 | tig0041406:-11585 | Msa1461260:intergenic |
| GCGGTTTGAGGCTGATCGGA+GGG | 0.544351 | tig0041406:-11504 | Msa1461260:intergenic |
| TGAGTCACGGAGGCGAGCTA+GGG | 0.544597 | tig0041406:-11400 | Msa1461260:intergenic |
| TAGATCCCGGAGAAGAAGGA+AGG | 0.559260 | tig0041406:-11549 | Msa1461260:intergenic |
| GGCGGCGGTTTGAGGCTGAT+CGG | 0.567721 | tig0041406:-11508 | Msa1461260:intergenic |
| GGCGGTTTGAGGCTGATCGG+AGG | 0.568671 | tig0041406:-11505 | Msa1461260:intergenic |
| TGGCGGTTATCTTTGAGTCA+CGG | 0.583959 | tig0041406:-11413 | Msa1461260:intergenic |
| TCTGAGAGAGGGAGTTGAGA+CGG | 0.588321 | tig0041406:-11443 | Msa1461260:intergenic |
| GTTTGAGGCTGATCGGAGGG+AGG | 0.605220 | tig0041406:-11501 | Msa1461260:intergenic |
| TTCCACAAATTCCTCAAACC+AGG | 0.613859 | tig0041406:+11375 | Msa1461260:CDS |
| GAAGAAGGAAGGGAAACCAT+CGG | 0.615545 | tig0041406:-11538 | Msa1461260:intergenic |
| TTCTTCCGTTGTGGACATCG+AGG | 0.627074 | tig0041406:-11576 | Msa1461260:intergenic |
| AGATCCCGGAGAAGAAGGAA+GGG | 0.635957 | tig0041406:-11548 | Msa1461260:intergenic |
| GTAGATTGAGATCTGAGAGA+GGG | 0.642846 | tig0041406:-11454 | Msa1461260:intergenic |
| GGTAGATTGAGATCTGAGAG+AGG | 0.644225 | tig0041406:-11455 | Msa1461260:intergenic |
| GTTGAGACGGTGAGATCTGG+CGG | 0.649621 | tig0041406:-11430 | Msa1461260:intergenic |
| ACGGTCCTCGATGTCCACAA+CGG | 0.679494 | tig0041406:+11571 | Msa1461260:CDS |
| CGGTTATCTTTGAGTCACGG+AGG | 0.737996 | tig0041406:-11410 | Msa1461250:intergenic |
| GAAGGAAGGGAAACCATCGG+CGG | 0.745154 | tig0041406:-11535 | Msa1461250:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAGTCAGTTTTCTTTGTTCC+TGG | + | tig0041406:11612-11631 | Msa1461260:CDS | 35.0% |
| !! | GATCTTGGTCTTGAATCATT+TGG | + | tig0041406:11660-11679 | Msa1461260:CDS | 35.0% |
| !! | TGGAAGTGGTTTGGTAAAGT+AGG | - | tig0041406:11360-11379 | Msa1147410:intergenic | 40.0% |
| AGGAATTTGTGGAAGTGGTT+TGG | - | tig0041406:11369-11388 | Msa1147410:intergenic | 40.0% | |
| GTTTGAGGAATTTGTGGAAG+TGG | - | tig0041406:11374-11393 | Msa1147410:intergenic | 40.0% | |
| TTCCACAAATTCCTCAAACC+AGG | + | tig0041406:11375-11394 | Msa1461260:CDS | 40.0% | |
| ! | TTCCTGGTTTGAGGAATTTG+TGG | - | tig0041406:11380-11399 | Msa1461260:intergenic | 40.0% |
| GTAGATTGAGATCTGAGAGA+GGG | - | tig0041406:11457-11476 | Msa1461260:intergenic | 40.0% | |
| !! | CTTGGTCTTGAATCATTTGG+TGG | + | tig0041406:11663-11682 | Msa1461260:CDS | 40.0% |
| TGGCGGTTATCTTTGAGTCA+CGG | - | tig0041406:11416-11435 | Msa1461260:intergenic | 45.0% | |
| GGTAGATTGAGATCTGAGAG+AGG | - | tig0041406:11458-11477 | Msa1461260:intergenic | 45.0% | |
| GAAGAAGGAAGGGAAACCAT+CGG | - | tig0041406:11541-11560 | Msa1461260:intergenic | 45.0% | |
| CGGTTATCTTTGAGTCACGG+AGG | - | tig0041406:11413-11432 | Msa1461260:intergenic | 50.0% | |
| TCTGAGAGAGGGAGTTGAGA+CGG | - | tig0041406:11446-11465 | Msa1461260:intergenic | 50.0% | |
| GGTTTCCCTTCCTTCTTCTC+CGG | + | tig0041406:11543-11562 | Msa1461260:CDS | 50.0% | |
| GTTTCCCTTCCTTCTTCTCC+GGG | + | tig0041406:11544-11563 | Msa1461260:CDS | 50.0% | |
| AGATCCCGGAGAAGAAGGAA+GGG | - | tig0041406:11551-11570 | Msa1461260:intergenic | 50.0% | |
| TAGATCCCGGAGAAGAAGGA+AGG | - | tig0041406:11552-11571 | Msa1461260:intergenic | 50.0% | |
| TCCTTCTTCTCCGGGATCTA+CGG | + | tig0041406:11552-11571 | Msa1461260:CDS | 50.0% | |
| TTCTTCCGTTGTGGACATCG+AGG | - | tig0041406:11579-11598 | Msa1461260:intergenic | 50.0% | |
| ! | GAGCTAGGGTTCCTGGTTTG+AGG | - | tig0041406:11389-11408 | Msa1461260:intergenic | 55.0% |
| GTTGAGACGGTGAGATCTGG+CGG | - | tig0041406:11433-11452 | Msa1461260:intergenic | 55.0% | |
| GGAGTTGAGACGGTGAGATC+TGG | - | tig0041406:11436-11455 | Msa1461260:intergenic | 55.0% | |
| GAAGGAAGGGAAACCATCGG+CGG | - | tig0041406:11538-11557 | Msa1461260:intergenic | 55.0% | |
| ACCGTAGATCCCGGAGAAGA+AGG | - | tig0041406:11556-11575 | Msa1461260:intergenic | 55.0% | |
| ACATCGAGGACCGTAGATCC+CGG | - | tig0041406:11565-11584 | Msa1461260:intergenic | 55.0% | |
| ACGGTCCTCGATGTCCACAA+CGG | + | tig0041406:11571-11590 | Msa1461260:CDS | 55.0% | |
| GCGACGAGTTTCTTCCGTTG+TGG | - | tig0041406:11588-11607 | Msa1461260:intergenic | 55.0% | |
| !! | GCTGCTGACTCAGCAGATCT+TGG | + | tig0041406:11645-11664 | Msa1461260:CDS | 55.0% |
| TGAGTCACGGAGGCGAGCTA+GGG | - | tig0041406:11403-11422 | Msa1461260:intergenic | 60.0% | |
| TTGAGTCACGGAGGCGAGCT+AGG | - | tig0041406:11404-11423 | Msa1461260:intergenic | 60.0% | |
| ! | GTTTGAGGCTGATCGGAGGG+AGG | - | tig0041406:11504-11523 | Msa1461260:intergenic | 60.0% |
| ! | GCGGTTTGAGGCTGATCGGA+GGG | - | tig0041406:11507-11526 | Msa1461260:intergenic | 60.0% |
| TCAGCAGCAGCAGGACTACC+AGG | - | tig0041406:11633-11652 | Msa1461260:intergenic | 60.0% | |
| TCTGCTGAGTCAGCAGCAGC+AGG | - | tig0041406:11642-11661 | Msa1461260:intergenic | 60.0% | |
| ! | GTGGTGGTGAGGCTGGTGGA+CGG | - | tig0041406:11479-11498 | Msa1461260:intergenic | 65.0% |
| ! | TGATCGGAGGGAGGTGGTGG+TGG | - | tig0041406:11495-11514 | Msa1461260:intergenic | 65.0% |
| TGAGGCTGATCGGAGGGAGG+TGG | - | tig0041406:11501-11520 | Msa1461260:intergenic | 65.0% | |
| ! | GGCGGTTTGAGGCTGATCGG+AGG | - | tig0041406:11508-11527 | Msa1461260:intergenic | 65.0% |
| ! | GGCGGCGGTTTGAGGCTGAT+CGG | - | tig0041406:11511-11530 | Msa1461260:intergenic | 65.0% |
| AGGGAAACCATCGGCGGCTG+CGG | - | tig0041406:11532-11551 | Msa1461260:intergenic | 65.0% | |
| CGGAGGCGAGCTAGGGTTCC+TGG | - | tig0041406:11396-11415 | Msa1461260:intergenic | 70.0% | |
| !! | GGTGGTGGTGGTGAGGCTGG+TGG | - | tig0041406:11483-11502 | Msa1461260:intergenic | 70.0% |
| !! | GGAGGTGGTGGTGGTGAGGC+TGG | - | tig0041406:11486-11505 | Msa1461260:intergenic | 70.0% |
| !! | GGAGGGAGGTGGTGGTGGTG+AGG | - | tig0041406:11490-11509 | Msa1461260:intergenic | 70.0% |
| GGCTGATCGGAGGGAGGTGG+TGG | - | tig0041406:11498-11517 | Msa1461260:intergenic | 70.0% | |
| GAAACCATCGGCGGCTGCGG+CGG | - | tig0041406:11529-11548 | Msa1461260:intergenic | 70.0% | |
| ! | GCGGCTGCGGCGGCGGTTTG+AGG | - | tig0041406:11519-11538 | Msa1461260:intergenic | 80.0% |
| ! | ACCATCGGCGGCTGCGGCGG+CGG | - | tig0041406:11526-11545 | Msa1461260:intergenic | 80.0% |
| ! | ACCGCCGCCGCAGCCGCCGA+TGG | + | tig0041406:11522-11541 | Msa1461260:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0041406 | gene | 11339 | 11707 | 11339 | ID=Msa1461260;Name=Msa1461260 |
| tig0041406 | mRNA | 11339 | 11707 | 11339 | ID=Msa1461260-mRNA-1;Parent=Msa1461260;Name=Msa1461260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|122 |
| tig0041406 | exon | 11339 | 11707 | 11339 | ID=Msa1461260-mRNA-1:exon:23094;Parent=Msa1461260-mRNA-1 |
| tig0041406 | CDS | 11339 | 11707 | 11339 | ID=Msa1461260-mRNA-1:cds;Parent=Msa1461260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
