Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219640 | XP_003609937.1 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 695 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219640 | sp|Q40134|RAD51_SOLLC | 88.304 | 342 | 39 | 1 | 1 | 341 | 1 | 342 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219640 | G7JS36 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 695 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030070 | Msa1219640 | 0.816968 | 4.206118e-52 | -8.615850e-47 |
| Msa0032230 | Msa1219640 | 0.855961 | 4.439135e-62 | -8.615850e-47 |
| Msa0093210 | Msa1219640 | 0.990326 | 4.190037e-182 | -8.615850e-47 |
| Msa0100600 | Msa1219640 | 0.819003 | 1.458591e-52 | -8.615850e-47 |
| Msa0100890 | Msa1219640 | 0.806258 | 8.976654e-50 | -8.615850e-47 |
| Msa0618990 | Msa1219640 | 0.815879 | 7.373966e-52 | -8.615850e-47 |
| Msa0625620 | Msa1219640 | 0.821344 | 4.243594e-53 | -8.615850e-47 |
| Msa0640800 | Msa1219640 | 0.837370 | 5.411296e-57 | -8.615850e-47 |
| Msa0647440 | Msa1219640 | 0.806300 | 8.794349e-50 | -8.615850e-47 |
| Msa0705180 | Msa1219640 | 0.802328 | 5.910058e-49 | -8.615850e-47 |
| Msa0707260 | Msa1219640 | 0.824202 | 9.170466e-54 | -8.615850e-47 |
| Msa0708980 | Msa1219640 | 0.802293 | 6.008772e-49 | -8.615850e-47 |
| Msa0720280 | Msa1219640 | 0.804448 | 2.149505e-49 | -8.615850e-47 |
| Msa0737020 | Msa1219640 | 0.833311 | 5.735472e-56 | -8.615850e-47 |
| Msa0803140 | Msa1219640 | 0.801979 | 6.973327e-49 | -8.615850e-47 |
| Msa0125590 | Msa1219640 | 0.837162 | 6.115327e-57 | -8.615850e-47 |
| Msa0127270 | Msa1219640 | 0.849469 | 3.170334e-60 | -8.615850e-47 |
| Msa0129960 | Msa1219640 | 0.829386 | 5.300635e-55 | -8.615850e-47 |
| Msa0170070 | Msa1219640 | 0.805853 | 1.092400e-49 | -8.615850e-47 |
| Msa0172510 | Msa1219640 | 0.824833 | 6.515210e-54 | -8.615850e-47 |
| Msa0192050 | Msa1219640 | 0.805070 | 1.594187e-49 | -8.615850e-47 |
| Msa0236820 | Msa1219640 | 0.808743 | 2.666252e-50 | -8.615850e-47 |
| Msa0373170 | Msa1219640 | 0.800800 | 1.215935e-48 | -8.615850e-47 |
| Msa0382230 | Msa1219640 | 0.829350 | 5.406141e-55 | -8.615850e-47 |
| Msa0388250 | Msa1219640 | 0.801757 | 7.746474e-49 | -8.615850e-47 |
| Msa0388620 | Msa1219640 | 0.810039 | 1.405265e-50 | -8.615850e-47 |
| Msa0416210 | Msa1219640 | 0.818569 | 1.830168e-52 | -8.615850e-47 |
| Msa0433630 | Msa1219640 | 0.826137 | 3.198852e-54 | -8.615850e-47 |
| Msa0456670 | Msa1219640 | 0.828039 | 1.121688e-54 | -8.615850e-47 |
| Msa0468620 | Msa1219640 | 0.818279 | 2.129117e-52 | -8.615850e-47 |
| Msa1000780 | Msa1219640 | 0.847358 | 1.216234e-59 | -8.615850e-47 |
| Msa1041370 | Msa1219640 | 0.804854 | 1.768363e-49 | -8.615850e-47 |
| Msa0288400 | Msa1219640 | 0.801938 | 7.111236e-49 | -8.615850e-47 |
| Msa0342220 | Msa1219640 | 0.803023 | 4.249135e-49 | -8.615850e-47 |
| Msa1201170 | Msa1219640 | 0.817047 | 4.038202e-52 | -8.615850e-47 |
| Msa1219640 | Msa1266620 | 0.990506 | 5.830367e-183 | -8.615850e-47 |
| Msa1219640 | Msa1267150 | 0.969540 | 2.845034e-130 | -8.615850e-47 |
| Msa1219640 | Msa1277110 | 0.802375 | 5.780182e-49 | -8.615850e-47 |
| Msa1219640 | Msa1293610 | 0.809732 | 1.636385e-50 | -8.615850e-47 |
| Msa1219640 | Msa1294280 | 0.814332 | 1.626019e-51 | -8.615850e-47 |
| Msa1219640 | Msa1294790 | 0.802090 | 6.616797e-49 | -8.615850e-47 |
| Msa1219640 | Msa1333650 | 0.984846 | 9.174750e-162 | -8.615850e-47 |
| Msa1219640 | Msa1339230 | 0.821008 | 5.073042e-53 | -8.615850e-47 |
| Msa1219640 | Msa1387500 | 0.809336 | 1.989655e-50 | -8.615850e-47 |
| Msa1219640 | Msa1393560 | 0.817655 | 2.945947e-52 | -8.615850e-47 |
| Msa1219640 | Msa1399190 | 0.827787 | 1.289994e-54 | -8.615850e-47 |
| Msa1219640 | Msa1426320 | 0.823838 | 1.116361e-53 | -8.615850e-47 |
| Msa1219640 | Msa1428690 | 0.968371 | 1.392434e-128 | -8.615850e-47 |
| Msa1219640 | Msa1435100 | 0.821541 | 3.822040e-53 | -8.615850e-47 |
| Msa1219640 | Msa1439730 | 0.825835 | 3.773234e-54 | -8.615850e-47 |
| Msa1219640 | Msa1444930 | 0.970404 | 1.447193e-131 | -8.615850e-47 |
| Msa1219640 | Msa1461260 | 0.828691 | 7.809297e-55 | -8.615850e-47 |
| Msa0514020 | Msa1219640 | 0.802726 | 4.893347e-49 | -8.615850e-47 |
| Msa0514500 | Msa1219640 | 0.816903 | 4.349493e-52 | -8.615850e-47 |
| Msa0520680 | Msa1219640 | 0.818807 | 1.616562e-52 | -8.615850e-47 |
| Msa0521510 | Msa1219640 | 0.824622 | 7.304804e-54 | -8.615850e-47 |
| Msa0544410 | Msa1219640 | 0.829645 | 4.583941e-55 | -8.615850e-47 |
| Msa0544430 | Msa1219640 | 0.827570 | 1.454176e-54 | -8.615850e-47 |
| Msa0572830 | Msa1219640 | 0.822326 | 2.515568e-53 | -8.615850e-47 |
| Msa0582460 | Msa1219640 | 0.805462 | 1.319338e-49 | -8.615850e-47 |
| Msa0584530 | Msa1219640 | 0.801922 | 7.165118e-49 | -8.615850e-47 |
| Msa0586200 | Msa1219640 | 0.810014 | 1.423001e-50 | -8.615850e-47 |
| Msa0846900 | Msa1219640 | 0.821148 | 4.710940e-53 | -8.615850e-47 |
| Msa0880280 | Msa1219640 | 0.987491 | 1.889719e-170 | -8.615850e-47 |
| Msa0926310 | Msa1219640 | 0.829104 | 6.203408e-55 | -8.615850e-47 |
| Msa0945900 | Msa1219640 | 0.800568 | 1.355943e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219640 | MtrunA17_Chr4g0069901 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 695 |
| Msa1219640 | MtrunA17_Chr1g0204601 | 54.817 | 301 | 135 | 1 | 27 | 327 | 32 | 331 | 2.23e-112 | 330 |
| Msa1219640 | MtrunA17_Chr4g0011421 | 30.723 | 332 | 185 | 9 | 42 | 338 | 15 | 336 | 3.56e-30 | 117 |
| Msa1219640 | MtrunA17_Chr4g0062441 | 33.463 | 257 | 140 | 7 | 104 | 338 | 11 | 258 | 1.14e-29 | 114 |
| Msa1219640 | MtrunA17_Chr5g0443271 | 40.741 | 135 | 58 | 2 | 193 | 327 | 17 | 129 | 9.95e-23 | 92.8 |
| Msa1219640 | MtrunA17_Chr2g0305351 | 28.938 | 273 | 166 | 7 | 93 | 340 | 11 | 280 | 7.81e-21 | 90.9 |
| Msa1219640 | MtrunA17_Chr2g0325901 | 29.119 | 261 | 151 | 7 | 103 | 336 | 101 | 354 | 1.78e-19 | 88.6 |
| Msa1219640 | MtrunA17_Chr4g0030771 | 27.386 | 241 | 143 | 8 | 104 | 327 | 89 | 314 | 1.69e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219640 | AT5G20850.1 | 87.683 | 341 | 40 | 1 | 1 | 341 | 4 | 342 | 0.0 | 624 |
| Msa1219640 | AT5G20850.2 | 88.040 | 301 | 34 | 1 | 1 | 301 | 4 | 302 | 0.0 | 557 |
| Msa1219640 | AT3G22880.1 | 53.651 | 315 | 145 | 1 | 27 | 341 | 31 | 344 | 3.70e-116 | 340 |
| Msa1219640 | AT3G22880.2 | 53.821 | 301 | 138 | 1 | 27 | 327 | 31 | 330 | 6.51e-111 | 326 |
| Msa1219640 | AT2G45280.1 | 31.000 | 300 | 169 | 7 | 42 | 312 | 36 | 326 | 1.23e-25 | 105 |
| Msa1219640 | AT2G45280.2 | 32.661 | 248 | 136 | 6 | 87 | 312 | 112 | 350 | 3.53e-25 | 105 |
| Msa1219640 | AT5G57450.2 | 27.465 | 284 | 160 | 6 | 103 | 340 | 20 | 303 | 4.65e-24 | 100 |
| Msa1219640 | AT5G57450.1 | 27.465 | 284 | 160 | 6 | 103 | 340 | 20 | 303 | 4.65e-24 | 100 |
| Msa1219640 | AT2G28560.3 | 29.057 | 265 | 156 | 7 | 103 | 341 | 51 | 309 | 2.38e-20 | 90.9 |
| Msa1219640 | AT2G28560.1 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 3.79e-20 | 90.5 |
| Msa1219640 | AT2G28560.6 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 4.18e-20 | 90.5 |
| Msa1219640 | AT2G28560.5 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 4.18e-20 | 90.5 |
| Msa1219640 | AT2G28560.2 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 4.18e-20 | 90.5 |
| Msa1219640 | AT2G28560.4 | 30.556 | 180 | 113 | 4 | 103 | 274 | 51 | 226 | 1.12e-15 | 75.9 |
| Msa1219640 | AT1G07745.1 | 25.941 | 239 | 154 | 6 | 76 | 306 | 64 | 287 | 1.06e-12 | 68.6 |
| Msa1219640 | AT1G07745.2 | 25.941 | 239 | 154 | 6 | 76 | 306 | 46 | 269 | 1.49e-12 | 67.8 |
Find 96 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGAATCTCTTCGGTTTCT+TGG | 0.161205 | 8_1:-82535212 | None:intergenic |
| GCCACCAATTGGCTTGGTTT+GGG | 0.257944 | 8_1:-82537840 | None:intergenic |
| ATTGCGATTTGTACAGTAAT+TGG | 0.263852 | 8_1:-82535083 | None:intergenic |
| GCCAATTGGTGGCAACATTA+TGG | 0.293831 | 8_1:+82537850 | Msa1219640:CDS |
| GGCTGAAAGCTCCCCTCTTC+CGG | 0.313600 | 8_1:-82537486 | None:intergenic |
| AGTGATTAGTTCTCCTTGTT+TGG | 0.313602 | 8_1:+82537934 | Msa1219640:CDS |
| TGCCACCAATTGGCTTGGTT+TGG | 0.332160 | 8_1:-82537841 | None:intergenic |
| TTGCGATTTGTACAGTAATT+GGG | 0.340715 | 8_1:-82535082 | None:intergenic |
| AGCTGGTAAGCTGGTGCCTA+TGG | 0.346402 | 8_1:+82536087 | Msa1219640:intron |
| CGTCAACTTGTGAAACTACT+TGG | 0.353913 | 8_1:-82537796 | None:intergenic |
| TGATAACGATAGTTTGTTGC+AGG | 0.356824 | 8_1:+82538166 | Msa1219640:three_prime_UTR |
| GACGGTTCTGCAATGTTTGC+TGG | 0.369464 | 8_1:+82537815 | Msa1219640:CDS |
| TCTGCAATAATGTTGAGTTT+TGG | 0.369673 | 8_1:+82538125 | Msa1219640:three_prime_UTR |
| GGTTCAGACAATGCTAAAAT+TGG | 0.370907 | 8_1:-82538016 | None:intergenic |
| CTAATTTCTGAAGGCTTCTC+AGG | 0.371141 | 8_1:-82537532 | None:intergenic |
| ATTTCGCTAAATGCATTTGC+CGG | 0.371203 | 8_1:-82537508 | None:intergenic |
| AAGAGAGCTTGACAAGATAT+TGG | 0.386237 | 8_1:+82536174 | Msa1219640:CDS |
| TTTACCCGTAGAACAACTTC+AGG | 0.397476 | 8_1:+82535242 | Msa1219640:CDS |
| ATGAAGATGAAGATTGAAAG+AGG | 0.407291 | 8_1:-82535043 | None:intergenic |
| GCCATAATGTTGCCACCAAT+TGG | 0.411385 | 8_1:-82537851 | None:intergenic |
| CTCAAGTCGTTGTTGCTCCA+TGG | 0.416061 | 8_1:-82535169 | None:intergenic |
| TTGTATGGTGAATTTCGATC+TGG | 0.418493 | 8_1:+82536335 | Msa1219640:CDS |
| TAATTGTATTCTCAGGCATC+GGG | 0.449868 | 8_1:+82535434 | Msa1219640:intron |
| TACGACAGGTTTGGACTGAA+TGG | 0.457584 | 8_1:+82537048 | Msa1219640:intron |
| CCACCAATTGGCTTGGTTTG+GGG | 0.463690 | 8_1:-82537839 | None:intergenic |
| TTACAATTACAACTAGCAAA+AGG | 0.465295 | 8_1:-82538072 | None:intergenic |
| CAATCAGGTGGAATTGAGAC+GGG | 0.472160 | 8_1:+82536299 | Msa1219640:intron |
| ACTGAATGGTCCTGATGTAT+TGG | 0.472714 | 8_1:+82537062 | Msa1219640:CDS |
| AATCTGTTGCTTATACTCCT+AGG | 0.488123 | 8_1:+82535510 | Msa1219640:CDS |
| GGTTCTATCACCGAGTTGTA+TGG | 0.488506 | 8_1:+82536320 | Msa1219640:CDS |
| ACAGTGCTACTGCTCTCTAT+AGG | 0.490455 | 8_1:+82537453 | Msa1219640:CDS |
| GGACCCCAAACCAAGCCAAT+TGG | 0.494568 | 8_1:+82537836 | Msa1219640:CDS |
| CCACGACAAGGTTAGCTCTC+AGG | 0.496287 | 8_1:+82537882 | Msa1219640:CDS |
| ATTAAGAAGCTTAAAGATGC+AGG | 0.498423 | 8_1:+82535473 | Msa1219640:CDS |
| TAAAATCTGAAACCTTGCTT+CGG | 0.499109 | 8_1:-82537963 | None:intergenic |
| TTTATTGACAGCTGGTAAGC+TGG | 0.500060 | 8_1:+82536078 | Msa1219640:intron |
| AATGTTGCCACCAATTGGCT+TGG | 0.501653 | 8_1:-82537846 | None:intergenic |
| ATTTGCAAAAGATCTTTCCT+AGG | 0.502674 | 8_1:-82535527 | None:intergenic |
| TTCAATGATCTTGTCAACCT+TGG | 0.504239 | 8_1:-82535567 | None:intergenic |
| TGAAGATGAAGATTGAAAGA+GGG | 0.507736 | 8_1:-82535042 | None:intergenic |
| TGAAGTTGTTCTACGGGTAA+AGG | 0.508750 | 8_1:-82535240 | None:intergenic |
| AGGACCGTGTTGAATCTCTT+CGG | 0.510828 | 8_1:-82535220 | None:intergenic |
| CCTCATCTGCTAATTTCTGA+AGG | 0.511857 | 8_1:-82537541 | None:intergenic |
| GCTGGTAAGCTGGTGCCTAT+GGG | 0.516629 | 8_1:+82536088 | Msa1219640:intron |
| CAAGTAGTTTCACAAGTTGA+CGG | 0.519262 | 8_1:+82537797 | Msa1219640:CDS |
| TAGATGCCGAGGGAACATTT+AGG | 0.520366 | 8_1:+82536924 | Msa1219640:CDS |
| TTAACCTGAAGTTGTTCTAC+GGG | 0.520860 | 8_1:-82535246 | None:intergenic |
| CCATTACAGAGAGGGGAAAG+AGG | 0.522157 | 8_1:-82538228 | None:intergenic |
| TGCGATTTGTACAGTAATTG+GGG | 0.523400 | 8_1:-82535081 | None:intergenic |
| ACTTGAAGCAGCTTCAATGA+TGG | 0.525271 | 8_1:+82537137 | Msa1219640:CDS |
| ATTAACCTGAAGTTGTTCTA+CGG | 0.528625 | 8_1:-82535247 | None:intergenic |
| TTTCGCTAAATGCATTTGCC+GGG | 0.529004 | 8_1:-82537507 | None:intergenic |
| CCCCAAACCAAGCCAATTGG+TGG | 0.539489 | 8_1:+82537839 | Msa1219640:CDS |
| CTTGTCAAGCTCTCTTGACC+CGG | 0.542171 | 8_1:-82536167 | None:intergenic |
| CTTCAATGATGGTGGAAACA+AGG | 0.543376 | 8_1:+82537148 | Msa1219640:CDS |
| TTAGCTCTCAGGAAAGGAAG+AGG | 0.549474 | 8_1:+82537893 | Msa1219640:CDS |
| TTGTAGTTGCCACTAGATCA+AGG | 0.550547 | 8_1:+82536875 | Msa1219640:intron |
| TCAATCAGGTGGAATTGAGA+CGG | 0.551223 | 8_1:+82536298 | Msa1219640:intron |
| TCGATTATTCAGATAACCAC+CGG | 0.554130 | 8_1:+82536148 | Msa1219640:CDS |
| GCTTCGGCTTCAGCCAAACA+AGG | 0.555538 | 8_1:-82537947 | None:intergenic |
| TGTGTAATTGTAGTTTGGTG+TGG | 0.558015 | 8_1:+82537757 | Msa1219640:intron |
| CAAAGGTATCAGTGATGCCA+AGG | 0.558029 | 8_1:+82535550 | Msa1219640:CDS |
| TCACCTCCTCCTTGATCTAG+TGG | 0.567569 | 8_1:-82536884 | None:intergenic |
| CTAGATCAAGGAGGAGGTGA+GGG | 0.569563 | 8_1:+82536887 | Msa1219640:CDS |
| CCTTCAGAAATTAGCAGATG+AGG | 0.570316 | 8_1:+82537541 | Msa1219640:CDS |
| GAAGAGGGGAGCTTTCAGCC+CGG | 0.571563 | 8_1:+82537489 | Msa1219640:CDS |
| TAGCTCTCAGGAAAGGAAGA+GGG | 0.571645 | 8_1:+82537894 | Msa1219640:CDS |
| CCTGAGAGCTAACCTTGTCG+TGG | 0.573304 | 8_1:-82537882 | None:intergenic |
| GTTGACAAGATCATTGAAGC+AGG | 0.573756 | 8_1:+82535572 | Msa1219640:CDS |
| GAGCTTGACAAGATATTGGA+AGG | 0.575499 | 8_1:+82536178 | Msa1219640:CDS |
| AGCTATGTACATAGATGCCG+AGG | 0.576766 | 8_1:+82536913 | Msa1219640:CDS |
| TGTATGGTGAATTTCGATCT+GGG | 0.581170 | 8_1:+82536336 | Msa1219640:CDS |
| GACTCTTACAGATAGCAGAT+AGG | 0.586304 | 8_1:+82536954 | Msa1219640:CDS |
| AGGGATTCAAAATGCGTCAG+AGG | 0.587974 | 8_1:-82535023 | None:intergenic |
| GTTTGGCTGAAGCCGAAGCA+AGG | 0.588117 | 8_1:+82537951 | Msa1219640:CDS |
| TGAAGCAGCTTCAATGATGG+TGG | 0.599232 | 8_1:+82537140 | Msa1219640:CDS |
| CTGAGGCCTAAATGTTCCCT+CGG | 0.602051 | 8_1:-82536930 | None:intergenic |
| AAGATCGAATCTTTAAACCA+TGG | 0.607413 | 8_1:+82535152 | Msa1219640:exon |
| AGTATAAGCAACAGATTCAA+CGG | 0.607715 | 8_1:-82535504 | None:intergenic |
| GTCAAGCTCTCTTGACCCGG+TGG | 0.607993 | 8_1:-82536164 | None:intergenic |
| ACAAGGTTAGCTCTCAGGAA+AGG | 0.614598 | 8_1:+82537887 | Msa1219640:CDS |
| TTCTCAGGCATCGGGTATAG+CGG | 0.620888 | 8_1:+82535442 | Msa1219640:intron |
| TTGCCACTAGATCAAGGAGG+AGG | 0.623636 | 8_1:+82536881 | Msa1219640:CDS |
| AGCTCTCAGGAAAGGAAGAG+GGG | 0.625477 | 8_1:+82537895 | Msa1219640:CDS |
| ACTAGATCAAGGAGGAGGTG+AGG | 0.625647 | 8_1:+82536886 | Msa1219640:CDS |
| GATAACGATAGTTTGTTGCA+GGG | 0.629808 | 8_1:+82538167 | Msa1219640:three_prime_UTR |
| CGATTATTCAGATAACCACC+GGG | 0.640229 | 8_1:+82536149 | Msa1219640:CDS |
| CTAGCGCTAGTAAAACCCAT+AGG | 0.648850 | 8_1:-82536103 | None:intergenic |
| GCGATTTGTACAGTAATTGG+GGG | 0.652251 | 8_1:-82535080 | None:intergenic |
| TCGAAATTCACCATACAACT+CGG | 0.653941 | 8_1:-82536330 | None:intergenic |
| TGGCTCATGCAACCACGACA+AGG | 0.656550 | 8_1:+82537870 | Msa1219640:CDS |
| ATAACACTGATCATCAGTCA+CGG | 0.679517 | 8_1:+82537109 | Msa1219640:CDS |
| GCTATGTACATAGATGCCGA+GGG | 0.713210 | 8_1:+82536914 | Msa1219640:CDS |
| GCTATCTGTAAGAGTCGCTG+AGG | 0.720598 | 8_1:-82536947 | None:intergenic |
| GAAACCGAAGAGATTCAACA+CGG | 0.755894 | 8_1:+82535216 | Msa1219640:CDS |
| TAGTTGCCACTAGATCAAGG+AGG | 0.810196 | 8_1:+82536878 | Msa1219640:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAAATTAGAAATAAT+GGG | - | chr8_1:82535315-82535334 | None:intergenic | 10.0% |
| !! | TAAAAAGAAATTAGAAATAA+TGG | - | chr8_1:82535316-82535335 | None:intergenic | 10.0% |
| !!! | ATTATTTCTAATTTCTTTTT+AGG | + | chr8_1:82535315-82535334 | Msa1219640:intron | 10.0% |
| !! | CAAAAAAATTATATCATTCA+AGG | - | chr8_1:82538040-82538059 | None:intergenic | 15.0% |
| !!! | TTCACTTTCAATTTTGTTTT+AGG | + | chr8_1:82535601-82535620 | Msa1219640:intron | 20.0% |
| !!! | TCACTTTCAATTTTGTTTTA+GGG | + | chr8_1:82535602-82535621 | Msa1219640:intron | 20.0% |
| !!! | TTTTAATAAGCTCTTTAGAA+TGG | + | chr8_1:82535857-82535876 | Msa1219640:intron | 20.0% |
| !! | ATAACCACTTATATGATAAA+TGG | + | chr8_1:82535933-82535952 | Msa1219640:intron | 20.0% |
| !! | ATAACCATTTATCATATAAG+TGG | - | chr8_1:82535940-82535959 | None:intergenic | 20.0% |
| !!! | ATAAATACTTTGTTTATGTG+TGG | + | chr8_1:82536215-82536234 | Msa1219640:intron | 20.0% |
| !!! | TAAATACTTTGTTTATGTGT+GGG | + | chr8_1:82536216-82536235 | Msa1219640:intron | 20.0% |
| !! | GTTTGAGTATTTGTATATAT+AGG | + | chr8_1:82536496-82536515 | Msa1219640:intron | 20.0% |
| !! | AAAATAACTAAAATAGTCCA+GGG | + | chr8_1:82536682-82536701 | Msa1219640:intron | 20.0% |
| !! | TAAGGAACATAAATATTGAA+TGG | - | chr8_1:82537027-82537046 | None:intergenic | 20.0% |
| !!! | AGATTTTTTTATACTAGTGA+TGG | + | chr8_1:82537335-82537354 | Msa1219640:intron | 20.0% |
| !!! | AGATATTGAAATTGTTTTTG+AGG | + | chr8_1:82537384-82537403 | Msa1219640:intron | 20.0% |
| !! | ACATATAAACATAATCAGTT+TGG | + | chr8_1:82537714-82537733 | Msa1219640:intron | 20.0% |
| !!! | TTTTTTGCACTTTGAACAAT+CGG | - | chr8_1:82535346-82535365 | None:intergenic | 25.0% |
| ! | AACAACGATAATAGTCAATT+GGG | - | chr8_1:82535397-82535416 | None:intergenic | 25.0% |
| !! | AAAGATCTTTTGCAAATCAA+AGG | + | chr8_1:82535533-82535552 | Msa1219640:CDS | 25.0% |
| !!! | ATTTTGTTTTAGGGTCTATT+TGG | + | chr8_1:82535611-82535630 | Msa1219640:intron | 25.0% |
| !! | CTAAGTTGAAAAAAGCTTAT+TGG | - | chr8_1:82535705-82535724 | None:intergenic | 25.0% |
| !!! | TAAGCTTTTTTCAACTTAGT+AGG | + | chr8_1:82535706-82535725 | Msa1219640:intron | 25.0% |
| !!! | AAGCTTTTTTCAACTTAGTA+GGG | + | chr8_1:82535707-82535726 | Msa1219640:intron | 25.0% |
| !!! | ACTTATGTTGTTTTCATGTA+AGG | - | chr8_1:82535734-82535753 | None:intergenic | 25.0% |
| !! | AAACAACATAAGTTCTTTTC+AGG | + | chr8_1:82535741-82535760 | Msa1219640:intron | 25.0% |
| !! | AACAACATAAGTTCTTTTCA+GGG | + | chr8_1:82535742-82535761 | Msa1219640:intron | 25.0% |
| ! | GATTAACATAATCAATTGTG+AGG | + | chr8_1:82535789-82535808 | Msa1219640:intron | 25.0% |
| !! | AAGTGCTTTATTAAGTTGTT+TGG | + | chr8_1:82535965-82535984 | Msa1219640:intron | 25.0% |
| ! | AATTACATGAATTGAGTGTT+TGG | - | chr8_1:82535991-82536010 | None:intergenic | 25.0% |
| !!! | TATATATTGCTGTTTCAATC+AGG | + | chr8_1:82536284-82536303 | Msa1219640:intron | 25.0% |
| ! | TGTATATATAGGAGAATACA+AGG | + | chr8_1:82536507-82536526 | Msa1219640:intron | 25.0% |
| ! | TTGAGAAAATAAGACAGAAT+AGG | - | chr8_1:82536623-82536642 | None:intergenic | 25.0% |
| !!! | TTACAGTTCATTCAAGTTTT+TGG | + | chr8_1:82536654-82536673 | Msa1219640:intron | 25.0% |
| !!! | TACAGTTCATTCAAGTTTTT+GGG | + | chr8_1:82536655-82536674 | Msa1219640:intron | 25.0% |
| !!! | CTGGACTATTTTAGTTATTT+TGG | - | chr8_1:82536683-82536702 | None:intergenic | 25.0% |
| ! | CAAAATAACTAAAATAGTCC+AGG | + | chr8_1:82536681-82536700 | Msa1219640:intron | 25.0% |
| ! | AAATAACTAAAATAGTCCAG+GGG | + | chr8_1:82536683-82536702 | Msa1219640:intron | 25.0% |
| ! | AATTACTAGGCAATGTTATT+AGG | - | chr8_1:82536839-82536858 | None:intergenic | 25.0% |
| ! | ATAAAGCCATATTATAACCT+TGG | - | chr8_1:82537225-82537244 | None:intergenic | 25.0% |
| ! | TTGCTTAGGATAGTAAATTT+AGG | + | chr8_1:82537667-82537686 | Msa1219640:intron | 25.0% |
| ! | TTGATTGTGTAATTGTAGTT+TGG | + | chr8_1:82537752-82537771 | Msa1219640:intron | 25.0% |
| ! | TTACAATTACAACTAGCAAA+AGG | - | chr8_1:82538075-82538094 | None:intergenic | 25.0% |
| TGAAGATGAAGATTGAAAGA+GGG | - | chr8_1:82535045-82535064 | None:intergenic | 30.0% | |
| ATGAAGATGAAGATTGAAAG+AGG | - | chr8_1:82535046-82535065 | None:intergenic | 30.0% | |
| TTGCGATTTGTACAGTAATT+GGG | - | chr8_1:82535085-82535104 | None:intergenic | 30.0% | |
| ATTGCGATTTGTACAGTAAT+TGG | - | chr8_1:82535086-82535105 | None:intergenic | 30.0% | |
| !!! | CTTTTTTCGAAGAGGAATTA+CGG | - | chr8_1:82535135-82535154 | None:intergenic | 30.0% |
| AAGATCGAATCTTTAAACCA+TGG | + | chr8_1:82535152-82535171 | Msa1219640:exon | 30.0% | |
| ATTAACCTGAAGTTGTTCTA+CGG | - | chr8_1:82535250-82535269 | None:intergenic | 30.0% | |
| ! | TAGAACAACTTCAGGTTAAT+GGG | + | chr8_1:82535250-82535269 | Msa1219640:intron | 30.0% |
| ! | TTTTTGCACTTTGAACAATC+GGG | - | chr8_1:82535345-82535364 | None:intergenic | 30.0% |
| TCCATCATCAGAGAAAAAAA+GGG | - | chr8_1:82535371-82535390 | None:intergenic | 30.0% | |
| CAACAACGATAATAGTCAAT+TGG | - | chr8_1:82535398-82535417 | None:intergenic | 30.0% | |
| CTGTGTTTAATTGTATTCTC+AGG | + | chr8_1:82535427-82535446 | Msa1219640:intron | 30.0% | |
| TTAATTGTATTCTCAGGCAT+CGG | + | chr8_1:82535433-82535452 | Msa1219640:intron | 30.0% | |
| ATTAAGAAGCTTAAAGATGC+AGG | + | chr8_1:82535473-82535492 | Msa1219640:CDS | 30.0% | |
| AGTATAAGCAACAGATTCAA+CGG | - | chr8_1:82535507-82535526 | None:intergenic | 30.0% | |
| ATTTGCAAAAGATCTTTCCT+AGG | - | chr8_1:82535530-82535549 | None:intergenic | 30.0% | |
| !!! | TTTCAGGGTCCTTTATTTTT+AGG | + | chr8_1:82535757-82535776 | Msa1219640:intron | 30.0% |
| CAAACAGAGCCTAAAAATAA+AGG | - | chr8_1:82535769-82535788 | None:intergenic | 30.0% | |
| !!! | CTTTATTTTTAGGCTCTGTT+TGG | + | chr8_1:82535767-82535786 | Msa1219640:intron | 30.0% |
| AATAAGCTGAAAACAGCTTA+TGG | - | chr8_1:82535839-82535858 | None:intergenic | 30.0% | |
| TTAATACCCATCATTGATGA+AGG | + | chr8_1:82536024-82536043 | Msa1219640:intron | 30.0% | |
| TTTGTTTGTTTATTGACAGC+TGG | + | chr8_1:82536070-82536089 | Msa1219640:intron | 30.0% | |
| ATTGTAGAAGAGGAAATTCT+TGG | + | chr8_1:82536582-82536601 | Msa1219640:intron | 30.0% | |
| CAACGATGAATTGAATTACT+AGG | - | chr8_1:82536852-82536871 | None:intergenic | 30.0% | |
| AATGGACATTTAACAGAAAC+AGG | - | chr8_1:82537009-82537028 | None:intergenic | 30.0% | |
| TTTATGTTCCTTAATACGAC+AGG | + | chr8_1:82537034-82537053 | Msa1219640:intron | 30.0% | |
| TCTAAACAATACTGAGCAAA+AGG | - | chr8_1:82537191-82537210 | None:intergenic | 30.0% | |
| CAATTGCCAAGGTTATAATA+TGG | + | chr8_1:82537216-82537235 | Msa1219640:intron | 30.0% | |
| AAATCTTACAATACAACGCA+AGG | - | chr8_1:82537321-82537340 | None:intergenic | 30.0% | |
| !!! | TTTTGAGGCTTACATTTTGA+TGG | + | chr8_1:82537399-82537418 | Msa1219640:intron | 30.0% |
| AGCTGATTAAGATATTGCTT+AGG | + | chr8_1:82537653-82537672 | Msa1219640:intron | 30.0% | |
| ! | TAAAATCTGAAACCTTGCTT+CGG | - | chr8_1:82537966-82537985 | None:intergenic | 30.0% |
| ! | TCTGCAATAATGTTGAGTTT+TGG | + | chr8_1:82538125-82538144 | Msa1219640:three_prime_UTR | 30.0% |
| TGCGATTTGTACAGTAATTG+GGG | - | chr8_1:82535084-82535103 | None:intergenic | 35.0% | |
| !!! | GATTCGATCTTTTTTCGAAG+AGG | - | chr8_1:82535143-82535162 | None:intergenic | 35.0% |
| TTAACCTGAAGTTGTTCTAC+GGG | - | chr8_1:82535249-82535268 | None:intergenic | 35.0% | |
| ! | GTAGAACAACTTCAGGTTAA+TGG | + | chr8_1:82535249-82535268 | Msa1219640:intron | 35.0% |
| !!! | ACCCTTTTTTTCTCTGATGA+TGG | + | chr8_1:82535367-82535386 | Msa1219640:intron | 35.0% |
| CTCCATCATCAGAGAAAAAA+AGG | - | chr8_1:82535372-82535391 | None:intergenic | 35.0% | |
| !!! | CTTTTTTTCTCTGATGATGG+AGG | + | chr8_1:82535370-82535389 | Msa1219640:intron | 35.0% |
| TAATTGTATTCTCAGGCATC+GGG | + | chr8_1:82535434-82535453 | Msa1219640:intron | 35.0% | |
| ! | AATCTGTTGCTTATACTCCT+AGG | + | chr8_1:82535510-82535529 | Msa1219640:CDS | 35.0% |
| TTCAATGATCTTGTCAACCT+TGG | - | chr8_1:82535570-82535589 | None:intergenic | 35.0% | |
| AGAAGACCTTCATCAATGAT+GGG | - | chr8_1:82536033-82536052 | None:intergenic | 35.0% | |
| TCGATTATTCAGATAACCAC+CGG | + | chr8_1:82536148-82536167 | Msa1219640:CDS | 35.0% | |
| AAGAGAGCTTGACAAGATAT+TGG | + | chr8_1:82536174-82536193 | Msa1219640:CDS | 35.0% | |
| TTGACAAGATATTGGAAGGT+TGG | + | chr8_1:82536182-82536201 | Msa1219640:intron | 35.0% | |
| !! | ATATTGCTGTTTCAATCAGG+TGG | + | chr8_1:82536287-82536306 | Msa1219640:intron | 35.0% |
| TCGAAATTCACCATACAACT+CGG | - | chr8_1:82536333-82536352 | None:intergenic | 35.0% | |
| TTGTATGGTGAATTTCGATC+TGG | + | chr8_1:82536335-82536354 | Msa1219640:CDS | 35.0% | |
| TGTATGGTGAATTTCGATCT+GGG | + | chr8_1:82536336-82536355 | Msa1219640:CDS | 35.0% | |
| AGGGAAACAAACAACATACT+TGG | - | chr8_1:82536397-82536416 | None:intergenic | 35.0% | |
| !! | CAAGAGGTATTGACACAAAA+GGG | - | chr8_1:82536416-82536435 | None:intergenic | 35.0% |
| !! | ACAAGAGGTATTGACACAAA+AGG | - | chr8_1:82536417-82536436 | None:intergenic | 35.0% |
| TAGTGACTCTATTGTAGAAG+AGG | + | chr8_1:82536572-82536591 | Msa1219640:intron | 35.0% | |
| ATGTCTATTTACATTTCCCC+TGG | - | chr8_1:82536702-82536721 | None:intergenic | 35.0% | |
| ATAACACTGATCATCAGTCA+CGG | + | chr8_1:82537109-82537128 | Msa1219640:CDS | 35.0% | |
| ! | AAACAAGGTATGACTTTTGC+TGG | + | chr8_1:82537163-82537182 | Msa1219640:intron | 35.0% |
| TGCTCAGTATTGTTTAGATC+TGG | + | chr8_1:82537193-82537212 | Msa1219640:intron | 35.0% | |
| AGCATTATTACCAGCTAAAC+AGG | + | chr8_1:82537266-82537285 | Msa1219640:intron | 35.0% | |
| ACAACGCAAGGCATAATAAA+TGG | - | chr8_1:82537309-82537328 | None:intergenic | 35.0% | |
| AGTGATGGTTGATCTGAATT+TGG | + | chr8_1:82537350-82537369 | Msa1219640:intron | 35.0% | |
| !! | CATTTTGATGGCTTATATGC+AGG | + | chr8_1:82537411-82537430 | Msa1219640:intron | 35.0% |
| ! | CTCTATAGGACAGATTTTTC+CGG | + | chr8_1:82537467-82537486 | Msa1219640:CDS | 35.0% |
| ATTTCGCTAAATGCATTTGC+CGG | - | chr8_1:82537511-82537530 | None:intergenic | 35.0% | |
| TGTGCATTACAATAGTGACA+TGG | - | chr8_1:82537575-82537594 | None:intergenic | 35.0% | |
| ! | TGTGTAATTGTAGTTTGGTG+TGG | + | chr8_1:82537757-82537776 | Msa1219640:intron | 35.0% |
| ! | CAAGTAGTTTCACAAGTTGA+CGG | + | chr8_1:82537797-82537816 | Msa1219640:CDS | 35.0% |
| ! | AGTGATTAGTTCTCCTTGTT+TGG | + | chr8_1:82537934-82537953 | Msa1219640:CDS | 35.0% |
| ! | GAAGCAAGGTTTCAGATTTT+AGG | + | chr8_1:82537965-82537984 | Msa1219640:CDS | 35.0% |
| GGTTCAGACAATGCTAAAAT+TGG | - | chr8_1:82538019-82538038 | None:intergenic | 35.0% | |
| !! | TGATAACGATAGTTTGTTGC+AGG | + | chr8_1:82538166-82538185 | Msa1219640:three_prime_UTR | 35.0% |
| !! | GATAACGATAGTTTGTTGCA+GGG | + | chr8_1:82538167-82538186 | Msa1219640:three_prime_UTR | 35.0% |
| GCGATTTGTACAGTAATTGG+GGG | - | chr8_1:82535083-82535102 | None:intergenic | 40.0% | |
| GTTGAATCTCTTCGGTTTCT+TGG | - | chr8_1:82535215-82535234 | None:intergenic | 40.0% | |
| GAAACCGAAGAGATTCAACA+CGG | + | chr8_1:82535216-82535235 | Msa1219640:CDS | 40.0% | |
| TGAAGTTGTTCTACGGGTAA+AGG | - | chr8_1:82535243-82535262 | None:intergenic | 40.0% | |
| TTTACCCGTAGAACAACTTC+AGG | + | chr8_1:82535242-82535261 | Msa1219640:CDS | 40.0% | |
| GTTGACAAGATCATTGAAGC+AGG | + | chr8_1:82535572-82535591 | Msa1219640:CDS | 40.0% | |
| CAGAAGACCTTCATCAATGA+TGG | - | chr8_1:82536034-82536053 | None:intergenic | 40.0% | |
| TTTATTGACAGCTGGTAAGC+TGG | + | chr8_1:82536078-82536097 | Msa1219640:intron | 40.0% | |
| CGATTATTCAGATAACCACC+GGG | + | chr8_1:82536149-82536168 | Msa1219640:CDS | 40.0% | |
| GAGCTTGACAAGATATTGGA+AGG | + | chr8_1:82536178-82536197 | Msa1219640:CDS | 40.0% | |
| TCAATCAGGTGGAATTGAGA+CGG | + | chr8_1:82536298-82536317 | Msa1219640:intron | 40.0% | |
| !! | GTAGAAAGCACTAGAACAAG+AGG | - | chr8_1:82536432-82536451 | None:intergenic | 40.0% |
| TTCTAGTGCTTTCTACCAAG+TGG | + | chr8_1:82536436-82536455 | Msa1219640:intron | 40.0% | |
| !! | CTACCAAGTGGTAACTTGTT+AGG | + | chr8_1:82536448-82536467 | Msa1219640:intron | 40.0% |
| TCTCCTAACAAGTTACCACT+TGG | - | chr8_1:82536454-82536473 | None:intergenic | 40.0% | |
| GTAGAAGAGGAAATTCTTGG+AGG | + | chr8_1:82536585-82536604 | Msa1219640:intron | 40.0% | |
| TTGTAGTTGCCACTAGATCA+AGG | + | chr8_1:82536875-82536894 | Msa1219640:intron | 40.0% | |
| GACTCTTACAGATAGCAGAT+AGG | + | chr8_1:82536954-82536973 | Msa1219640:CDS | 40.0% | |
| GTTCCTTAATACGACAGGTT+TGG | + | chr8_1:82537039-82537058 | Msa1219640:intron | 40.0% | |
| AGTCCAAACCTGTCGTATTA+AGG | - | chr8_1:82537045-82537064 | None:intergenic | 40.0% | |
| ACTGAATGGTCCTGATGTAT+TGG | + | chr8_1:82537062-82537081 | Msa1219640:CDS | 40.0% | |
| ! | GCGACATTTTCCAATACATC+AGG | - | chr8_1:82537075-82537094 | None:intergenic | 40.0% |
| ACTTGAAGCAGCTTCAATGA+TGG | + | chr8_1:82537137-82537156 | Msa1219640:CDS | 40.0% | |
| !! | CTTCAATGATGGTGGAAACA+AGG | + | chr8_1:82537148-82537167 | Msa1219640:CDS | 40.0% |
| TTTAGATCTGGCAATTGCCA+AGG | + | chr8_1:82537205-82537224 | Msa1219640:intron | 40.0% | |
| TATTACCAGCTAAACAGGCT+AGG | + | chr8_1:82537271-82537290 | Msa1219640:intron | 40.0% | |
| TAAAACCTAGCCTGTTTAGC+TGG | - | chr8_1:82537279-82537298 | None:intergenic | 40.0% | |
| TTTCGCTAAATGCATTTGCC+GGG | - | chr8_1:82537510-82537529 | None:intergenic | 40.0% | |
| ! | CTAATTTCTGAAGGCTTCTC+AGG | - | chr8_1:82537535-82537554 | None:intergenic | 40.0% |
| CCTCATCTGCTAATTTCTGA+AGG | - | chr8_1:82537544-82537563 | None:intergenic | 40.0% | |
| CCTTCAGAAATTAGCAGATG+AGG | + | chr8_1:82537541-82537560 | Msa1219640:CDS | 40.0% | |
| CGTCAACTTGTGAAACTACT+TGG | - | chr8_1:82537799-82537818 | None:intergenic | 40.0% | |
| ! | AGGTTTCAGATTTTAGGCGA+AGG | + | chr8_1:82537971-82537990 | Msa1219640:CDS | 40.0% |
| ! | GGTTTCAGATTTTAGGCGAA+GGG | + | chr8_1:82537972-82537991 | Msa1219640:CDS | 40.0% |
| ! | GTTTCAGATTTTAGGCGAAG+GGG | + | chr8_1:82537973-82537992 | Msa1219640:CDS | 40.0% |
| AGGGATTCAAAATGCGTCAG+AGG | - | chr8_1:82535026-82535045 | None:intergenic | 45.0% | |
| AGGACCGTGTTGAATCTCTT+CGG | - | chr8_1:82535223-82535242 | None:intergenic | 45.0% | |
| !! | CAAAGGTATCAGTGATGCCA+AGG | + | chr8_1:82535550-82535569 | Msa1219640:CDS | 45.0% |
| ATGAAGGTCTTCTGAGTCTG+TGG | + | chr8_1:82536040-82536059 | Msa1219640:intron | 45.0% | |
| CTAGCGCTAGTAAAACCCAT+AGG | - | chr8_1:82536106-82536125 | None:intergenic | 45.0% | |
| CAATCAGGTGGAATTGAGAC+GGG | + | chr8_1:82536299-82536318 | Msa1219640:intron | 45.0% | |
| GGTTCTATCACCGAGTTGTA+TGG | + | chr8_1:82536320-82536339 | Msa1219640:CDS | 45.0% | |
| TAGTTGCCACTAGATCAAGG+AGG | + | chr8_1:82536878-82536897 | Msa1219640:intron | 45.0% | |
| AGCTATGTACATAGATGCCG+AGG | + | chr8_1:82536913-82536932 | Msa1219640:CDS | 45.0% | |
| GCTATGTACATAGATGCCGA+GGG | + | chr8_1:82536914-82536933 | Msa1219640:CDS | 45.0% | |
| TAGATGCCGAGGGAACATTT+AGG | + | chr8_1:82536924-82536943 | Msa1219640:CDS | 45.0% | |
| TACGACAGGTTTGGACTGAA+TGG | + | chr8_1:82537048-82537067 | Msa1219640:intron | 45.0% | |
| TGAAGCAGCTTCAATGATGG+TGG | + | chr8_1:82537140-82537159 | Msa1219640:CDS | 45.0% | |
| ! | ACAGTGCTACTGCTCTCTAT+AGG | + | chr8_1:82537453-82537472 | Msa1219640:CDS | 45.0% |
| ! | AGGACAGATTTTTCCGGAAG+AGG | + | chr8_1:82537473-82537492 | Msa1219640:CDS | 45.0% |
| ! | GGACAGATTTTTCCGGAAGA+GGG | + | chr8_1:82537474-82537493 | Msa1219640:CDS | 45.0% |
| ! | GACAGATTTTTCCGGAAGAG+GGG | + | chr8_1:82537475-82537494 | Msa1219640:CDS | 45.0% |
| AATGTTGCCACCAATTGGCT+TGG | - | chr8_1:82537849-82537868 | None:intergenic | 45.0% | |
| ! | GCCAATTGGTGGCAACATTA+TGG | + | chr8_1:82537850-82537869 | Msa1219640:CDS | 45.0% |
| GCCATAATGTTGCCACCAAT+TGG | - | chr8_1:82537854-82537873 | None:intergenic | 45.0% | |
| ! | ACAAGGTTAGCTCTCAGGAA+AGG | + | chr8_1:82537887-82537906 | Msa1219640:CDS | 45.0% |
| ! | TTAGCTCTCAGGAAAGGAAG+AGG | + | chr8_1:82537893-82537912 | Msa1219640:CDS | 45.0% |
| TAGCTCTCAGGAAAGGAAGA+GGG | + | chr8_1:82537894-82537913 | Msa1219640:CDS | 45.0% | |
| ! | GATTTTAGGCGAAGGGGTTT+CGG | + | chr8_1:82537979-82537998 | Msa1219640:CDS | 45.0% |
| CTCAAGTCGTTGTTGCTCCA+TGG | - | chr8_1:82535172-82535191 | None:intergenic | 50.0% | |
| !! | TTCTCAGGCATCGGGTATAG+CGG | + | chr8_1:82535442-82535461 | Msa1219640:intron | 50.0% |
| CTTGTCAAGCTCTCTTGACC+CGG | - | chr8_1:82536170-82536189 | None:intergenic | 50.0% | |
| TTGCCACTAGATCAAGGAGG+AGG | + | chr8_1:82536881-82536900 | Msa1219640:CDS | 50.0% | |
| TCACCTCCTCCTTGATCTAG+TGG | - | chr8_1:82536887-82536906 | None:intergenic | 50.0% | |
| ACTAGATCAAGGAGGAGGTG+AGG | + | chr8_1:82536886-82536905 | Msa1219640:CDS | 50.0% | |
| CTAGATCAAGGAGGAGGTGA+GGG | + | chr8_1:82536887-82536906 | Msa1219640:CDS | 50.0% | |
| CTGAGGCCTAAATGTTCCCT+CGG | - | chr8_1:82536933-82536952 | None:intergenic | 50.0% | |
| GCTATCTGTAAGAGTCGCTG+AGG | - | chr8_1:82536950-82536969 | None:intergenic | 50.0% | |
| GACGGTTCTGCAATGTTTGC+TGG | + | chr8_1:82537815-82537834 | Msa1219640:CDS | 50.0% | |
| !! | CCACCAATTGGCTTGGTTTG+GGG | - | chr8_1:82537842-82537861 | None:intergenic | 50.0% |
| !! | GCCACCAATTGGCTTGGTTT+GGG | - | chr8_1:82537843-82537862 | None:intergenic | 50.0% |
| !! | TGCCACCAATTGGCTTGGTT+TGG | - | chr8_1:82537844-82537863 | None:intergenic | 50.0% |
| AGCTCTCAGGAAAGGAAGAG+GGG | + | chr8_1:82537895-82537914 | Msa1219640:CDS | 50.0% | |
| AGCTGGTAAGCTGGTGCCTA+TGG | + | chr8_1:82536087-82536106 | Msa1219640:intron | 55.0% | |
| GCTGGTAAGCTGGTGCCTAT+GGG | + | chr8_1:82536088-82536107 | Msa1219640:intron | 55.0% | |
| GGACCCCAAACCAAGCCAAT+TGG | + | chr8_1:82537836-82537855 | Msa1219640:CDS | 55.0% | |
| CCCCAAACCAAGCCAATTGG+TGG | + | chr8_1:82537839-82537858 | Msa1219640:CDS | 55.0% | |
| TGGCTCATGCAACCACGACA+AGG | + | chr8_1:82537870-82537889 | Msa1219640:CDS | 55.0% | |
| CCTGAGAGCTAACCTTGTCG+TGG | - | chr8_1:82537885-82537904 | None:intergenic | 55.0% | |
| ! | CCACGACAAGGTTAGCTCTC+AGG | + | chr8_1:82537882-82537901 | Msa1219640:CDS | 55.0% |
| GCTTCGGCTTCAGCCAAACA+AGG | - | chr8_1:82537950-82537969 | None:intergenic | 55.0% | |
| GTTTGGCTGAAGCCGAAGCA+AGG | + | chr8_1:82537951-82537970 | Msa1219640:CDS | 55.0% | |
| GTCAAGCTCTCTTGACCCGG+TGG | - | chr8_1:82536167-82536186 | None:intergenic | 60.0% | |
| GGCTGAAAGCTCCCCTCTTC+CGG | - | chr8_1:82537489-82537508 | None:intergenic | 60.0% | |
| GAAGAGGGGAGCTTTCAGCC+CGG | + | chr8_1:82537489-82537508 | Msa1219640:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 82535007 | 82538240 | 82535007 | ID=Msa1219640;Name=Msa1219640 |
| chr8_1 | mRNA | 82535007 | 82538240 | 82535007 | ID=Msa1219640-mRNA-1;Parent=Msa1219640;Name=Msa1219640-mRNA-1;_AED=0.03;_eAED=0.03;_QI=164|1|1|1|1|1|8|225|341 |
| chr8_1 | exon | 82535007 | 82535263 | 82535007 | ID=Msa1219640-mRNA-1:exon:29368;Parent=Msa1219640-mRNA-1 |
| chr8_1 | exon | 82535449 | 82535593 | 82535449 | ID=Msa1219640-mRNA-1:exon:29369;Parent=Msa1219640-mRNA-1 |
| chr8_1 | exon | 82536089 | 82536199 | 82536089 | ID=Msa1219640-mRNA-1:exon:29370;Parent=Msa1219640-mRNA-1 |
| chr8_1 | exon | 82536306 | 82536397 | 82536306 | ID=Msa1219640-mRNA-1:exon:29371;Parent=Msa1219640-mRNA-1 |
| chr8_1 | exon | 82536881 | 82536975 | 82536881 | ID=Msa1219640-mRNA-1:exon:29372;Parent=Msa1219640-mRNA-1 |
| chr8_1 | exon | 82537056 | 82537169 | 82537056 | ID=Msa1219640-mRNA-1:exon:29373;Parent=Msa1219640-mRNA-1 |
| chr8_1 | exon | 82537433 | 82537562 | 82537433 | ID=Msa1219640-mRNA-1:exon:29374;Parent=Msa1219640-mRNA-1 |
| chr8_1 | exon | 82537770 | 82538240 | 82537770 | ID=Msa1219640-mRNA-1:exon:29375;Parent=Msa1219640-mRNA-1 |
| chr8_1 | five_prime_UTR | 82535007 | 82535170 | 82535007 | ID=Msa1219640-mRNA-1:five_prime_utr;Parent=Msa1219640-mRNA-1 |
| chr8_1 | CDS | 82535171 | 82535263 | 82535171 | ID=Msa1219640-mRNA-1:cds;Parent=Msa1219640-mRNA-1 |
| chr8_1 | CDS | 82535449 | 82535593 | 82535449 | ID=Msa1219640-mRNA-1:cds;Parent=Msa1219640-mRNA-1 |
| chr8_1 | CDS | 82536089 | 82536199 | 82536089 | ID=Msa1219640-mRNA-1:cds;Parent=Msa1219640-mRNA-1 |
| chr8_1 | CDS | 82536306 | 82536397 | 82536306 | ID=Msa1219640-mRNA-1:cds;Parent=Msa1219640-mRNA-1 |
| chr8_1 | CDS | 82536881 | 82536975 | 82536881 | ID=Msa1219640-mRNA-1:cds;Parent=Msa1219640-mRNA-1 |
| chr8_1 | CDS | 82537056 | 82537169 | 82537056 | ID=Msa1219640-mRNA-1:cds;Parent=Msa1219640-mRNA-1 |
| chr8_1 | CDS | 82537433 | 82537562 | 82537433 | ID=Msa1219640-mRNA-1:cds;Parent=Msa1219640-mRNA-1 |
| chr8_1 | CDS | 82537770 | 82538015 | 82537770 | ID=Msa1219640-mRNA-1:cds;Parent=Msa1219640-mRNA-1 |
| chr8_1 | three_prime_UTR | 82538016 | 82538240 | 82538016 | ID=Msa1219640-mRNA-1:three_prime_utr;Parent=Msa1219640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
