AlfalfaGEDB | Msa1428690

M. sativa cultivar zhongmu-4 / Msa1428690

KEGG: K04482
GO: GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0022607 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051716 GO:0060255 GO:0061982 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046 GO:1903506 GO:2000112 GO:2001141
PFAM: PF14520.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1428690	XP_003609937.1	99.707	341	1	0	1	341	1	341	0.0	695

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1428690	sp\|Q40134\|RAD51_SOLLC	88.304	342	39	1	1	341	1	342	0.0	627

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1428690	G7JS36	99.707	341	1	0	1	341	1	341	0.0	695

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0030070	Msa1428690	0.806808	6.872949e-50	-8.615850e-47
Msa0032230	Msa1428690	0.841905	3.577620e-58	-8.615850e-47
Msa0093210	Msa1428690	0.962238	1.220134e-120	-8.615850e-47
Msa0100600	Msa1428690	0.810169	1.317569e-50	-8.615850e-47
Msa0100890	Msa1428690	0.801964	7.021807e-49	-8.615850e-47
Msa0125590	Msa1428690	0.824278	8.800678e-54	-8.615850e-47
Msa0127270	Msa1428690	0.827329	1.661650e-54	-8.615850e-47
Msa0129960	Msa1428690	0.810636	1.044369e-50	-8.615850e-47
Msa0172510	Msa1428690	0.802870	4.568497e-49	-8.615850e-47
Msa0180100	Msa1428690	-0.801578	8.429276e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1428690	MtrunA17_Chr4g0069901	99.707	341	1	0	1	341	1	341	0.0	695
Msa1428690	MtrunA17_Chr1g0204601	54.817	301	135	1	27	327	32	331	2.23e-112	330
Msa1428690	MtrunA17_Chr4g0011421	30.723	332	185	9	42	338	15	336	3.56e-30	117
Msa1428690	MtrunA17_Chr4g0062441	33.463	257	140	7	104	338	11	258	1.14e-29	114
Msa1428690	MtrunA17_Chr5g0443271	40.741	135	58	2	193	327	17	129	9.95e-23	92.8
Msa1428690	MtrunA17_Chr2g0305351	28.938	273	166	7	93	340	11	280	7.81e-21	90.9
Msa1428690	MtrunA17_Chr2g0325901	29.119	261	151	7	103	336	101	354	1.78e-19	88.6
Msa1428690	MtrunA17_Chr4g0030771	27.386	241	143	8	104	327	89	314	1.69e-14	73.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1428690	AT5G20850.1	87.683	341	40	1	1	341	4	342	0.0	624
Msa1428690	AT5G20850.2	88.040	301	34	1	1	301	4	302	0.0	557
Msa1428690	AT3G22880.1	53.651	315	145	1	27	341	31	344	3.70e-116	340
Msa1428690	AT3G22880.2	53.821	301	138	1	27	327	31	330	6.51e-111	326
Msa1428690	AT2G45280.1	31.000	300	169	7	42	312	36	326	1.23e-25	105
Msa1428690	AT2G45280.2	32.661	248	136	6	87	312	112	350	3.53e-25	105
Msa1428690	AT5G57450.2	27.465	284	160	6	103	340	20	303	4.65e-24	100
Msa1428690	AT5G57450.1	27.465	284	160	6	103	340	20	303	4.65e-24	100
Msa1428690	AT2G28560.3	29.057	265	156	7	103	341	51	309	2.38e-20	90.9
Msa1428690	AT2G28560.1	29.057	265	156	7	103	341	83	341	3.79e-20	90.5

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Find 96 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAGATGAAGATTGAAAG+AGG	0.407701	tig0026406:-33193	None:intergenic
AAGAGAGCTTGACAAGATAT+TGG	0.386237	tig0026406:+34311	Msa1428690:CDS
AAGATCGAATCTTTAAACCA+TGG	0.607413	tig0026406:+33290	Msa1428690:exon
AATCTGTTGCTTATACTCCT+AGG	0.488123	tig0026406:+33647	Msa1428690:CDS
AATGTTGCCACCAATTGGCT+TGG	0.501653	tig0026406:-35983	None:intergenic
ACAAGGTTAGCTCTCAGGAA+AGG	0.614598	tig0026406:+36024	Msa1428690:CDS
ACAGTGCTACTGCTCTCTAT+AGG	0.490455	tig0026406:+35590	Msa1428690:CDS
ACTAGATCAAGGAGGAGGTG+AGG	0.625647	tig0026406:+35023	Msa1428690:CDS
ACTGAATGGTCCTGATGTAT+TGG	0.472714	tig0026406:+35199	Msa1428690:CDS
ACTTGAAGCAGCTTCAATGA+TGG	0.525271	tig0026406:+35274	Msa1428690:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAGATGAAGATTGAAAGA+GGG	-	tig0026406:33195-33214	None:intergenic	30.0%
AAGAAGATGAAGATTGAAAG+AGG	-	tig0026406:33196-33215	None:intergenic	30.0%
TTGCGATTTGTACAGTAATT+GGG	-	tig0026406:33223-33242	None:intergenic	30.0%
ATTGCGATTTGTACAGTAAT+TGG	-	tig0026406:33224-33243	None:intergenic	30.0%
AAGATCGAATCTTTAAACCA+TGG	+	tig0026406:33290-33309	Msa1428690:exon	30.0%
ATTAACCTGAAGTTGTTCTA+CGG	-	tig0026406:33388-33407	None:intergenic	30.0%
CAACAACGATAATAGTCAAT+TGG	-	tig0026406:33535-33554	None:intergenic	30.0%
CTGTGTTTAATTGTATTCTC+AGG	+	tig0026406:33564-33583	Msa1428690:intron	30.0%
TTAATTGTATTCTCAGGCAT+CGG	+	tig0026406:33570-33589	Msa1428690:intron	30.0%
ATTAAGAAGCTTAAAGATGC+AGG	+	tig0026406:33610-33629	Msa1428690:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0026406	gene	33157	36377	33157	ID=Msa1428690;Name=Msa1428690
tig0026406	mRNA	33157	36377	33157	ID=Msa1428690-mRNA-1;Parent=Msa1428690;Name=Msa1428690-mRNA-1;_AED=0.03;_eAED=0.03;_QI=152\|1\|1\|1\|1\|1\|8\|225\|341
tig0026406	exon	33157	33401	33157	ID=Msa1428690-mRNA-1:exon:6064;Parent=Msa1428690-mRNA-1
tig0026406	exon	33586	33730	33586	ID=Msa1428690-mRNA-1:exon:6065;Parent=Msa1428690-mRNA-1
tig0026406	exon	34226	34336	34226	ID=Msa1428690-mRNA-1:exon:6066;Parent=Msa1428690-mRNA-1
tig0026406	exon	34443	34534	34443	ID=Msa1428690-mRNA-1:exon:6067;Parent=Msa1428690-mRNA-1
tig0026406	exon	35018	35112	35018	ID=Msa1428690-mRNA-1:exon:6068;Parent=Msa1428690-mRNA-1
tig0026406	exon	35193	35306	35193	ID=Msa1428690-mRNA-1:exon:6069;Parent=Msa1428690-mRNA-1
tig0026406	exon	35570	35699	35570	ID=Msa1428690-mRNA-1:exon:6070;Parent=Msa1428690-mRNA-1
tig0026406	exon	35907	36377	35907	ID=Msa1428690-mRNA-1:exon:6071;Parent=Msa1428690-mRNA-1
tig0026406	five_prime_UTR	33157	33308	33157	ID=Msa1428690-mRNA-1:five_prime_utr;Parent=Msa1428690-mRNA-1
tig0026406	CDS	33309	33401	33309	ID=Msa1428690-mRNA-1:cds;Parent=Msa1428690-mRNA-1
tig0026406	CDS	33586	33730	33586	ID=Msa1428690-mRNA-1:cds;Parent=Msa1428690-mRNA-1
tig0026406	CDS	34226	34336	34226	ID=Msa1428690-mRNA-1:cds;Parent=Msa1428690-mRNA-1
tig0026406	CDS	34443	34534	34443	ID=Msa1428690-mRNA-1:cds;Parent=Msa1428690-mRNA-1
tig0026406	CDS	35018	35112	35018	ID=Msa1428690-mRNA-1:cds;Parent=Msa1428690-mRNA-1
tig0026406	CDS	35193	35306	35193	ID=Msa1428690-mRNA-1:cds;Parent=Msa1428690-mRNA-1
tig0026406	CDS	35570	35699	35570	ID=Msa1428690-mRNA-1:cds;Parent=Msa1428690-mRNA-1
tig0026406	CDS	35907	36152	35907	ID=Msa1428690-mRNA-1:cds;Parent=Msa1428690-mRNA-1
tig0026406	three_prime_UTR	36153	36377	36153	ID=Msa1428690-mRNA-1:three_prime_utr;Parent=Msa1428690-mRNA-1

Gene Sequence

>Msa1428690

ATGGAGCAACAACGACTTGAGAAAACAGCACAACAACACGACCAAGAAACCGAAGAGATTCAACACGGTCCTTTACCCGTAGAACAACTTCAGGCATCGGGTATAGCGGCACTTGACATTAAGAAGCTTAAAGATGCAGGTATTTGTACCGTTGAATCTGTTGCTTATACTCCTAGGAAAGATCTTTTGCAAATCAAAGGTATCAGTGATGCCAAGGTTGACAAGATCATTGAAGCAGCTGGTAAGCTGGTGCCTATGGGTTTTACTAGCGCTAGTGAGCTTCATGCTCAGCGAGAATCGATTATTCAGATAACCACCGGGTCAAGAGAGCTTGACAAGATATTGGAAGGTGGAATTGAGACGGGTTCTATCACCGAGTTGTATGGTGAATTTCGATCTGGGAAGACTCAGTTGTGTCACACTCTCTGTGTCACTTGCCAATTGCCACTAGATCAAGGAGGAGGTGAGGGTAAAGCTATGTACATAGATGCCGAGGGAACATTTAGGCCTCAGCGACTCTTACAGATAGCAGATAGGTTTGGACTGAATGGTCCTGATGTATTGGAAAATGTCGCTTATGCTAGAGCGTATAACACTGATCATCAGTCACGGCTTCTACTTGAAGCAGCTTCAATGATGGTGGAAACAAGGTTTGCTCTAATGATAATAGACAGTGCTACTGCTCTCTATAGGACAGATTTTTCCGGAAGAGGGGAGCTTTCAGCCCGGCAAATGCATTTAGCGAAATTCCTGAGAAGCCTTCAGAAATTAGCAGATGAGTTTGGTGTGGCTGTTGTCTTAACAAACCAAGTAGTTTCACAAGTTGACGGTTCTGCAATGTTTGCTGGACCCCAAACCAAGCCAATTGGTGGCAACATTATGGCTCATGCAACCACGACAAGGTTAGCTCTCAGGAAAGGAAGAGGGGAAGAGCGAATCTGTAAAGTGATTAGTTCTCCTTGTTTGGCTGAAGCCGAAGCAAGGTTTCAGATTTTAGGCGAAGGGGTTTCGGATGTTAAAGACTGA

Protein sequence

>Msa1428690

MEQQRLEKTAQQHDQETEEIQHGPLPVEQLQASGIAALDIKKLKDAGICTVESVAYTPRKDLLQIKGISDAKVDKIIEAAGKLVPMGFTSASELHAQRESIIQITTGSRELDKILEGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGPDVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIIDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVLTNQVVSQVDGSAMFAGPQTKPIGGNIMAHATTTRLALRKGRGEERICKVISSPCLAEAEARFQILGEGVSDVKD*