Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1428690 | XP_003609937.1 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 695 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1428690 | sp|Q40134|RAD51_SOLLC | 88.304 | 342 | 39 | 1 | 1 | 341 | 1 | 342 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1428690 | G7JS36 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 695 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030070 | Msa1428690 | 0.806808 | 6.872949e-50 | -8.615850e-47 |
| Msa0032230 | Msa1428690 | 0.841905 | 3.577620e-58 | -8.615850e-47 |
| Msa0093210 | Msa1428690 | 0.962238 | 1.220134e-120 | -8.615850e-47 |
| Msa0100600 | Msa1428690 | 0.810169 | 1.317569e-50 | -8.615850e-47 |
| Msa0100890 | Msa1428690 | 0.801964 | 7.021807e-49 | -8.615850e-47 |
| Msa1393560 | Msa1428690 | 0.814971 | 1.173953e-51 | -8.615850e-47 |
| Msa1399190 | Msa1428690 | 0.835864 | 1.309092e-56 | -8.615850e-47 |
| Msa1426320 | Msa1428690 | 0.819478 | 1.137551e-52 | -8.615850e-47 |
| Msa1428690 | Msa1435100 | 0.826960 | 2.035670e-54 | -8.615850e-47 |
| Msa1428690 | Msa1439730 | 0.831278 | 1.828080e-55 | -8.615850e-47 |
| Msa1428690 | Msa1444930 | 0.998245 | 9.110469e-260 | -8.615850e-47 |
| Msa1428690 | Msa1461260 | 0.823007 | 1.746360e-53 | -8.615850e-47 |
| Msa0618990 | Msa1428690 | 0.820400 | 6.996317e-53 | -8.615850e-47 |
| Msa0625620 | Msa1428690 | 0.811197 | 7.897007e-51 | -8.615850e-47 |
| Msa0640800 | Msa1428690 | 0.810437 | 1.153386e-50 | -8.615850e-47 |
| Msa0647440 | Msa1428690 | 0.806124 | 9.579366e-50 | -8.615850e-47 |
| Msa0689830 | Msa1428690 | 0.806467 | 8.109067e-50 | -8.615850e-47 |
| Msa0690740 | Msa1428690 | 0.801077 | 1.067286e-48 | -8.615850e-47 |
| Msa0705180 | Msa1428690 | 0.802773 | 4.783988e-49 | -8.615850e-47 |
| Msa0707260 | Msa1428690 | 0.826308 | 2.912821e-54 | -8.615850e-47 |
| Msa0708980 | Msa1428690 | 0.800497 | 1.401854e-48 | -8.615850e-47 |
| Msa0737020 | Msa1428690 | 0.812169 | 4.853113e-51 | -8.615850e-47 |
| Msa0125590 | Msa1428690 | 0.824278 | 8.800678e-54 | -8.615850e-47 |
| Msa0127270 | Msa1428690 | 0.827329 | 1.661650e-54 | -8.615850e-47 |
| Msa0129960 | Msa1428690 | 0.810636 | 1.044369e-50 | -8.615850e-47 |
| Msa0172510 | Msa1428690 | 0.802870 | 4.568497e-49 | -8.615850e-47 |
| Msa0180100 | Msa1428690 | -0.801578 | 8.429276e-49 | -8.615850e-47 |
| Msa0192050 | Msa1428690 | 0.818877 | 1.558287e-52 | -8.615850e-47 |
| Msa1226370 | Msa1428690 | 0.801365 | 9.320587e-49 | -8.615850e-47 |
| Msa1266620 | Msa1428690 | 0.964585 | 1.638419e-123 | -8.615850e-47 |
| Msa1267150 | Msa1428690 | 0.941580 | 3.244724e-101 | -8.615850e-47 |
| Msa1294280 | Msa1428690 | 0.817099 | 3.930737e-52 | -8.615850e-47 |
| Msa1301830 | Msa1428690 | 0.801404 | 9.150167e-49 | -8.615850e-47 |
| Msa1315500 | Msa1428690 | 0.801199 | 1.007876e-48 | -8.615850e-47 |
| Msa1333650 | Msa1428690 | 0.957944 | 7.946332e-116 | -8.615850e-47 |
| Msa1339230 | Msa1428690 | 0.819988 | 8.696054e-53 | -8.615850e-47 |
| Msa0382230 | Msa1428690 | 0.830569 | 2.727834e-55 | -8.615850e-47 |
| Msa0388250 | Msa1428690 | 0.803444 | 3.475793e-49 | -8.615850e-47 |
| Msa0388620 | Msa1428690 | 0.814512 | 1.483989e-51 | -8.615850e-47 |
| Msa0416210 | Msa1428690 | 0.820268 | 7.504772e-53 | -8.615850e-47 |
| Msa0433630 | Msa1428690 | 0.837977 | 3.780254e-57 | -8.615850e-47 |
| Msa0456670 | Msa1428690 | 0.812824 | 3.490765e-51 | -8.615850e-47 |
| Msa0468620 | Msa1428690 | 0.813755 | 2.179589e-51 | -8.615850e-47 |
| Msa1000780 | Msa1428690 | 0.858426 | 8.307888e-63 | -8.615850e-47 |
| Msa1041370 | Msa1428690 | 0.810014 | 1.422969e-50 | -8.615850e-47 |
| Msa0288400 | Msa1428690 | 0.807025 | 6.182283e-50 | -8.615850e-47 |
| Msa0342220 | Msa1428690 | 0.803098 | 4.100100e-49 | -8.615850e-47 |
| Msa1201170 | Msa1428690 | 0.807677 | 4.498183e-50 | -8.615850e-47 |
| Msa1201780 | Msa1428690 | 0.802817 | 4.686529e-49 | -8.615850e-47 |
| Msa1206040 | Msa1428690 | 0.800428 | 1.447751e-48 | -8.615850e-47 |
| Msa1219640 | Msa1428690 | 0.968371 | 1.392434e-128 | -8.615850e-47 |
| Msa0514020 | Msa1428690 | 0.805513 | 1.287424e-49 | -8.615850e-47 |
| Msa0514500 | Msa1428690 | 0.812488 | 4.134898e-51 | -8.615850e-47 |
| Msa0520680 | Msa1428690 | 0.823240 | 1.541162e-53 | -8.615850e-47 |
| Msa0521510 | Msa1428690 | 0.839774 | 1.295746e-57 | -8.615850e-47 |
| Msa0521530 | Msa1428690 | 0.818437 | 1.961573e-52 | -8.615850e-47 |
| Msa0544410 | Msa1428690 | 0.806662 | 7.377568e-50 | -8.615850e-47 |
| Msa0544430 | Msa1428690 | 0.819156 | 1.346797e-52 | -8.615850e-47 |
| Msa0572830 | Msa1428690 | 0.819359 | 1.210395e-52 | -8.615850e-47 |
| Msa0586200 | Msa1428690 | 0.800732 | 1.255684e-48 | -8.615850e-47 |
| Msa0846900 | Msa1428690 | 0.832843 | 7.498395e-56 | -8.615850e-47 |
| Msa0861440 | Msa1428690 | 0.806074 | 9.812946e-50 | -8.615850e-47 |
| Msa0880280 | Msa1428690 | 0.963317 | 6.146880e-122 | -8.615850e-47 |
| Msa0926310 | Msa1428690 | 0.845276 | 4.491613e-59 | -8.615850e-47 |
| Msa0930040 | Msa1428690 | 0.808848 | 2.531124e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1428690 | MtrunA17_Chr4g0069901 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 695 |
| Msa1428690 | MtrunA17_Chr1g0204601 | 54.817 | 301 | 135 | 1 | 27 | 327 | 32 | 331 | 2.23e-112 | 330 |
| Msa1428690 | MtrunA17_Chr4g0011421 | 30.723 | 332 | 185 | 9 | 42 | 338 | 15 | 336 | 3.56e-30 | 117 |
| Msa1428690 | MtrunA17_Chr4g0062441 | 33.463 | 257 | 140 | 7 | 104 | 338 | 11 | 258 | 1.14e-29 | 114 |
| Msa1428690 | MtrunA17_Chr5g0443271 | 40.741 | 135 | 58 | 2 | 193 | 327 | 17 | 129 | 9.95e-23 | 92.8 |
| Msa1428690 | MtrunA17_Chr2g0305351 | 28.938 | 273 | 166 | 7 | 93 | 340 | 11 | 280 | 7.81e-21 | 90.9 |
| Msa1428690 | MtrunA17_Chr2g0325901 | 29.119 | 261 | 151 | 7 | 103 | 336 | 101 | 354 | 1.78e-19 | 88.6 |
| Msa1428690 | MtrunA17_Chr4g0030771 | 27.386 | 241 | 143 | 8 | 104 | 327 | 89 | 314 | 1.69e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1428690 | AT5G20850.1 | 87.683 | 341 | 40 | 1 | 1 | 341 | 4 | 342 | 0.0 | 624 |
| Msa1428690 | AT5G20850.2 | 88.040 | 301 | 34 | 1 | 1 | 301 | 4 | 302 | 0.0 | 557 |
| Msa1428690 | AT3G22880.1 | 53.651 | 315 | 145 | 1 | 27 | 341 | 31 | 344 | 3.70e-116 | 340 |
| Msa1428690 | AT3G22880.2 | 53.821 | 301 | 138 | 1 | 27 | 327 | 31 | 330 | 6.51e-111 | 326 |
| Msa1428690 | AT2G45280.1 | 31.000 | 300 | 169 | 7 | 42 | 312 | 36 | 326 | 1.23e-25 | 105 |
| Msa1428690 | AT2G45280.2 | 32.661 | 248 | 136 | 6 | 87 | 312 | 112 | 350 | 3.53e-25 | 105 |
| Msa1428690 | AT5G57450.2 | 27.465 | 284 | 160 | 6 | 103 | 340 | 20 | 303 | 4.65e-24 | 100 |
| Msa1428690 | AT5G57450.1 | 27.465 | 284 | 160 | 6 | 103 | 340 | 20 | 303 | 4.65e-24 | 100 |
| Msa1428690 | AT2G28560.3 | 29.057 | 265 | 156 | 7 | 103 | 341 | 51 | 309 | 2.38e-20 | 90.9 |
| Msa1428690 | AT2G28560.1 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 3.79e-20 | 90.5 |
| Msa1428690 | AT2G28560.6 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 4.18e-20 | 90.5 |
| Msa1428690 | AT2G28560.5 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 4.18e-20 | 90.5 |
| Msa1428690 | AT2G28560.2 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 4.18e-20 | 90.5 |
| Msa1428690 | AT2G28560.4 | 30.556 | 180 | 113 | 4 | 103 | 274 | 51 | 226 | 1.12e-15 | 75.9 |
| Msa1428690 | AT1G07745.1 | 25.941 | 239 | 154 | 6 | 76 | 306 | 64 | 287 | 1.06e-12 | 68.6 |
| Msa1428690 | AT1G07745.2 | 25.941 | 239 | 154 | 6 | 76 | 306 | 46 | 269 | 1.49e-12 | 67.8 |
Find 96 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGAATCTCTTCGGTTTCT+TGG | 0.161205 | tig0026406:-33350 | None:intergenic |
| GCCACCAATTGGCTTGGTTT+GGG | 0.257944 | tig0026406:-35977 | None:intergenic |
| ATTGCGATTTGTACAGTAAT+TGG | 0.263852 | tig0026406:-33221 | None:intergenic |
| GCCAATTGGTGGCAACATTA+TGG | 0.293831 | tig0026406:+35987 | Msa1428690:CDS |
| GGCTGAAAGCTCCCCTCTTC+CGG | 0.313600 | tig0026406:-35623 | None:intergenic |
| AGTGATTAGTTCTCCTTGTT+TGG | 0.313602 | tig0026406:+36071 | Msa1428690:CDS |
| TGCCACCAATTGGCTTGGTT+TGG | 0.332160 | tig0026406:-35978 | None:intergenic |
| TTGCGATTTGTACAGTAATT+GGG | 0.340715 | tig0026406:-33220 | None:intergenic |
| AGCTGGTAAGCTGGTGCCTA+TGG | 0.346402 | tig0026406:+34224 | Msa1428690:intron |
| CGTCAACTTGTGAAACTACT+TGG | 0.353913 | tig0026406:-35933 | None:intergenic |
| TGATAACGATAGTTTGTTGC+AGG | 0.356824 | tig0026406:+36303 | Msa1428690:three_prime_UTR |
| GACGGTTCTGCAATGTTTGC+TGG | 0.369464 | tig0026406:+35952 | Msa1428690:CDS |
| TCTGCAATAATGTTGAGTTT+TGG | 0.369673 | tig0026406:+36262 | Msa1428690:three_prime_UTR |
| GGTTCAGACAATGCTAAAAT+TGG | 0.370907 | tig0026406:-36153 | None:intergenic |
| CTAATTTCTGAAGGCTTCTC+AGG | 0.371141 | tig0026406:-35669 | None:intergenic |
| ATTTCGCTAAATGCATTTGC+CGG | 0.371203 | tig0026406:-35645 | None:intergenic |
| AAGAGAGCTTGACAAGATAT+TGG | 0.386237 | tig0026406:+34311 | Msa1428690:CDS |
| TTTACCCGTAGAACAACTTC+AGG | 0.397476 | tig0026406:+33380 | Msa1428690:CDS |
| AAGAAGATGAAGATTGAAAG+AGG | 0.407701 | tig0026406:-33193 | None:intergenic |
| GCCATAATGTTGCCACCAAT+TGG | 0.411385 | tig0026406:-35988 | None:intergenic |
| CTCAAGTCGTTGTTGCTCCA+TGG | 0.416061 | tig0026406:-33307 | None:intergenic |
| TTGTATGGTGAATTTCGATC+TGG | 0.418493 | tig0026406:+34472 | Msa1428690:CDS |
| TAATTGTATTCTCAGGCATC+GGG | 0.449868 | tig0026406:+33571 | Msa1428690:intron |
| TACGACAGGTTTGGACTGAA+TGG | 0.457584 | tig0026406:+35185 | Msa1428690:intron |
| CCACCAATTGGCTTGGTTTG+GGG | 0.463690 | tig0026406:-35976 | None:intergenic |
| TTACAATTACAACTAGCAAA+AGG | 0.465295 | tig0026406:-36209 | None:intergenic |
| CAATCAGGTGGAATTGAGAC+GGG | 0.472160 | tig0026406:+34436 | Msa1428690:intron |
| ACTGAATGGTCCTGATGTAT+TGG | 0.472714 | tig0026406:+35199 | Msa1428690:CDS |
| AATCTGTTGCTTATACTCCT+AGG | 0.488123 | tig0026406:+33647 | Msa1428690:CDS |
| GGTTCTATCACCGAGTTGTA+TGG | 0.488506 | tig0026406:+34457 | Msa1428690:CDS |
| ACAGTGCTACTGCTCTCTAT+AGG | 0.490455 | tig0026406:+35590 | Msa1428690:CDS |
| GGACCCCAAACCAAGCCAAT+TGG | 0.494568 | tig0026406:+35973 | Msa1428690:CDS |
| CCACGACAAGGTTAGCTCTC+AGG | 0.496287 | tig0026406:+36019 | Msa1428690:CDS |
| ATTAAGAAGCTTAAAGATGC+AGG | 0.498423 | tig0026406:+33610 | Msa1428690:CDS |
| TAAAATCTGAAACCTTGCTT+CGG | 0.499109 | tig0026406:-36100 | None:intergenic |
| TTTATTGACAGCTGGTAAGC+TGG | 0.500060 | tig0026406:+34215 | Msa1428690:intron |
| AATGTTGCCACCAATTGGCT+TGG | 0.501653 | tig0026406:-35983 | None:intergenic |
| ATTTGCAAAAGATCTTTCCT+AGG | 0.502674 | tig0026406:-33664 | None:intergenic |
| TTCAATGATCTTGTCAACCT+TGG | 0.504239 | tig0026406:-33704 | None:intergenic |
| TGAAGTTGTTCTACGGGTAA+AGG | 0.508750 | tig0026406:-33378 | None:intergenic |
| AGGACCGTGTTGAATCTCTT+CGG | 0.510828 | tig0026406:-33358 | None:intergenic |
| CCTCATCTGCTAATTTCTGA+AGG | 0.511857 | tig0026406:-35678 | None:intergenic |
| GCTGGTAAGCTGGTGCCTAT+GGG | 0.516629 | tig0026406:+34225 | Msa1428690:intron |
| CAAGTAGTTTCACAAGTTGA+CGG | 0.519262 | tig0026406:+35934 | Msa1428690:CDS |
| TAGATGCCGAGGGAACATTT+AGG | 0.520366 | tig0026406:+35061 | Msa1428690:CDS |
| TTAACCTGAAGTTGTTCTAC+GGG | 0.520860 | tig0026406:-33384 | None:intergenic |
| CCATTACAGAGAGGGGAAAG+AGG | 0.522157 | tig0026406:-36365 | None:intergenic |
| TGCGATTTGTACAGTAATTG+GGG | 0.523400 | tig0026406:-33219 | None:intergenic |
| ACTTGAAGCAGCTTCAATGA+TGG | 0.525271 | tig0026406:+35274 | Msa1428690:CDS |
| ATTAACCTGAAGTTGTTCTA+CGG | 0.528625 | tig0026406:-33385 | None:intergenic |
| TTTCGCTAAATGCATTTGCC+GGG | 0.529004 | tig0026406:-35644 | None:intergenic |
| CCCCAAACCAAGCCAATTGG+TGG | 0.539489 | tig0026406:+35976 | Msa1428690:CDS |
| CTTGTCAAGCTCTCTTGACC+CGG | 0.542171 | tig0026406:-34304 | None:intergenic |
| CTTCAATGATGGTGGAAACA+AGG | 0.543376 | tig0026406:+35285 | Msa1428690:CDS |
| TTAGCTCTCAGGAAAGGAAG+AGG | 0.549474 | tig0026406:+36030 | Msa1428690:CDS |
| TTGTAGTTGCCACTAGATCA+AGG | 0.550547 | tig0026406:+35012 | Msa1428690:intron |
| TCAATCAGGTGGAATTGAGA+CGG | 0.551223 | tig0026406:+34435 | Msa1428690:intron |
| TCGATTATTCAGATAACCAC+CGG | 0.554130 | tig0026406:+34285 | Msa1428690:CDS |
| GCTTCGGCTTCAGCCAAACA+AGG | 0.555538 | tig0026406:-36084 | None:intergenic |
| TGTGTAATTGTAGTTTGGTG+TGG | 0.558015 | tig0026406:+35894 | Msa1428690:intron |
| CAAAGGTATCAGTGATGCCA+AGG | 0.558029 | tig0026406:+33687 | Msa1428690:CDS |
| AGAAGATGAAGATTGAAAGA+GGG | 0.558723 | tig0026406:-33192 | None:intergenic |
| TCACCTCCTCCTTGATCTAG+TGG | 0.567569 | tig0026406:-35021 | None:intergenic |
| CTAGATCAAGGAGGAGGTGA+GGG | 0.569563 | tig0026406:+35024 | Msa1428690:CDS |
| CCTTCAGAAATTAGCAGATG+AGG | 0.570316 | tig0026406:+35678 | Msa1428690:CDS |
| GAAGAGGGGAGCTTTCAGCC+CGG | 0.571563 | tig0026406:+35626 | Msa1428690:CDS |
| TAGCTCTCAGGAAAGGAAGA+GGG | 0.571645 | tig0026406:+36031 | Msa1428690:CDS |
| CCTGAGAGCTAACCTTGTCG+TGG | 0.573304 | tig0026406:-36019 | None:intergenic |
| GTTGACAAGATCATTGAAGC+AGG | 0.573756 | tig0026406:+33709 | Msa1428690:CDS |
| GAGCTTGACAAGATATTGGA+AGG | 0.575499 | tig0026406:+34315 | Msa1428690:CDS |
| AGCTATGTACATAGATGCCG+AGG | 0.576766 | tig0026406:+35050 | Msa1428690:CDS |
| TGTATGGTGAATTTCGATCT+GGG | 0.581170 | tig0026406:+34473 | Msa1428690:CDS |
| GACTCTTACAGATAGCAGAT+AGG | 0.586304 | tig0026406:+35091 | Msa1428690:CDS |
| AGGGATTCAAAATGCGTCAG+AGG | 0.587974 | tig0026406:-33173 | None:intergenic |
| GTTTGGCTGAAGCCGAAGCA+AGG | 0.588117 | tig0026406:+36088 | Msa1428690:CDS |
| TGAAGCAGCTTCAATGATGG+TGG | 0.599232 | tig0026406:+35277 | Msa1428690:CDS |
| CTGAGGCCTAAATGTTCCCT+CGG | 0.602051 | tig0026406:-35067 | None:intergenic |
| AAGATCGAATCTTTAAACCA+TGG | 0.607413 | tig0026406:+33290 | Msa1428690:exon |
| AGTATAAGCAACAGATTCAA+CGG | 0.607715 | tig0026406:-33641 | None:intergenic |
| GTCAAGCTCTCTTGACCCGG+TGG | 0.607993 | tig0026406:-34301 | None:intergenic |
| ACAAGGTTAGCTCTCAGGAA+AGG | 0.614598 | tig0026406:+36024 | Msa1428690:CDS |
| TTCTCAGGCATCGGGTATAG+CGG | 0.620888 | tig0026406:+33579 | Msa1428690:intron |
| TTGCCACTAGATCAAGGAGG+AGG | 0.623636 | tig0026406:+35018 | Msa1428690:CDS |
| AGCTCTCAGGAAAGGAAGAG+GGG | 0.625477 | tig0026406:+36032 | Msa1428690:CDS |
| ACTAGATCAAGGAGGAGGTG+AGG | 0.625647 | tig0026406:+35023 | Msa1428690:CDS |
| GATAACGATAGTTTGTTGCA+GGG | 0.629808 | tig0026406:+36304 | Msa1428690:three_prime_UTR |
| CGATTATTCAGATAACCACC+GGG | 0.640229 | tig0026406:+34286 | Msa1428690:CDS |
| CTAGCGCTAGTAAAACCCAT+AGG | 0.648850 | tig0026406:-34240 | None:intergenic |
| GCGATTTGTACAGTAATTGG+GGG | 0.652251 | tig0026406:-33218 | None:intergenic |
| TCGAAATTCACCATACAACT+CGG | 0.653941 | tig0026406:-34467 | None:intergenic |
| TGGCTCATGCAACCACGACA+AGG | 0.656550 | tig0026406:+36007 | Msa1428690:CDS |
| ATAACACTGATCATCAGTCA+CGG | 0.679517 | tig0026406:+35246 | Msa1428690:CDS |
| GCTATGTACATAGATGCCGA+GGG | 0.713210 | tig0026406:+35051 | Msa1428690:CDS |
| GCTATCTGTAAGAGTCGCTG+AGG | 0.720598 | tig0026406:-35084 | None:intergenic |
| GAAACCGAAGAGATTCAACA+CGG | 0.755894 | tig0026406:+33354 | Msa1428690:CDS |
| TAGTTGCCACTAGATCAAGG+AGG | 0.810196 | tig0026406:+35015 | Msa1428690:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAAATTAGAAATAAT+GGG | - | tig0026406:33453-33472 | None:intergenic | 10.0% |
| !! | TAAAAAGAAATTAGAAATAA+TGG | - | tig0026406:33454-33473 | None:intergenic | 10.0% |
| !!! | ATTATTTCTAATTTCTTTTT+AGG | + | tig0026406:33453-33472 | Msa1428690:intron | 10.0% |
| !! | CAAAAAAATTATATCATTCA+AGG | - | tig0026406:36177-36196 | None:intergenic | 15.0% |
| !!! | TTCACTTTCAATTTTGTTTT+AGG | + | tig0026406:33738-33757 | Msa1428690:intron | 20.0% |
| !!! | TCACTTTCAATTTTGTTTTA+GGG | + | tig0026406:33739-33758 | Msa1428690:intron | 20.0% |
| !!! | TTTTAATAAGCTCTTTAGAA+TGG | + | tig0026406:33994-34013 | Msa1428690:intron | 20.0% |
| !! | ATAACCACTTATATGATAAA+TGG | + | tig0026406:34070-34089 | Msa1428690:intron | 20.0% |
| !! | ATAACCATTTATCATATAAG+TGG | - | tig0026406:34077-34096 | None:intergenic | 20.0% |
| !!! | ATAAATACTTTGTTTATGTG+TGG | + | tig0026406:34352-34371 | Msa1428690:intron | 20.0% |
| !!! | TAAATACTTTGTTTATGTGT+GGG | + | tig0026406:34353-34372 | Msa1428690:intron | 20.0% |
| !! | GTTTGAGTATTTGTATATAT+AGG | + | tig0026406:34633-34652 | Msa1428690:intron | 20.0% |
| !! | AAAATAACTAAAATAGTCCA+GGG | + | tig0026406:34819-34838 | Msa1428690:intron | 20.0% |
| !! | TAAGGAACATAAATATTGAA+TGG | - | tig0026406:35164-35183 | None:intergenic | 20.0% |
| !!! | AGATTTTTTTATACTAGTGA+TGG | + | tig0026406:35472-35491 | Msa1428690:intron | 20.0% |
| !!! | AGATATTGAAATTGTTTTTG+AGG | + | tig0026406:35521-35540 | Msa1428690:intron | 20.0% |
| !! | ACATATAAACATAATCAGTT+TGG | + | tig0026406:35851-35870 | Msa1428690:intron | 20.0% |
| !!! | TTTTTTGCACTTTGAACAAT+CGG | - | tig0026406:33484-33503 | None:intergenic | 25.0% |
| ! | AACAACGATAATAGTCAATT+GGG | - | tig0026406:33534-33553 | None:intergenic | 25.0% |
| !! | AAAGATCTTTTGCAAATCAA+AGG | + | tig0026406:33670-33689 | Msa1428690:CDS | 25.0% |
| !!! | ATTTTGTTTTAGGGTCTATT+TGG | + | tig0026406:33748-33767 | Msa1428690:intron | 25.0% |
| !! | CTAAGTTGAAAAAAGCTTAT+TGG | - | tig0026406:33842-33861 | None:intergenic | 25.0% |
| !!! | TAAGCTTTTTTCAACTTAGT+AGG | + | tig0026406:33843-33862 | Msa1428690:intron | 25.0% |
| !!! | AAGCTTTTTTCAACTTAGTA+GGG | + | tig0026406:33844-33863 | Msa1428690:intron | 25.0% |
| !!! | ACTTATGTTGTTTTCATGTA+AGG | - | tig0026406:33871-33890 | None:intergenic | 25.0% |
| !! | AAACAACATAAGTTCTTTTC+AGG | + | tig0026406:33878-33897 | Msa1428690:intron | 25.0% |
| !! | AACAACATAAGTTCTTTTCA+GGG | + | tig0026406:33879-33898 | Msa1428690:intron | 25.0% |
| ! | GATTAACATAATCAATTGTG+AGG | + | tig0026406:33926-33945 | Msa1428690:intron | 25.0% |
| !! | AAGTGCTTTATTAAGTTGTT+TGG | + | tig0026406:34102-34121 | Msa1428690:intron | 25.0% |
| ! | AATTACATGAATTGAGTGTT+TGG | - | tig0026406:34128-34147 | None:intergenic | 25.0% |
| !!! | TATATATTGCTGTTTCAATC+AGG | + | tig0026406:34421-34440 | Msa1428690:intron | 25.0% |
| ! | TGTATATATAGGAGAATACA+AGG | + | tig0026406:34644-34663 | Msa1428690:intron | 25.0% |
| ! | TTGAGAAAATAAGACAGAAT+AGG | - | tig0026406:34760-34779 | None:intergenic | 25.0% |
| !!! | TTACAGTTCATTCAAGTTTT+TGG | + | tig0026406:34791-34810 | Msa1428690:intron | 25.0% |
| !!! | TACAGTTCATTCAAGTTTTT+GGG | + | tig0026406:34792-34811 | Msa1428690:intron | 25.0% |
| !!! | CTGGACTATTTTAGTTATTT+TGG | - | tig0026406:34820-34839 | None:intergenic | 25.0% |
| ! | CAAAATAACTAAAATAGTCC+AGG | + | tig0026406:34818-34837 | Msa1428690:intron | 25.0% |
| ! | AAATAACTAAAATAGTCCAG+GGG | + | tig0026406:34820-34839 | Msa1428690:intron | 25.0% |
| ! | AATTACTAGGCAATGTTATT+AGG | - | tig0026406:34976-34995 | None:intergenic | 25.0% |
| ! | ATAAAGCCATATTATAACCT+TGG | - | tig0026406:35362-35381 | None:intergenic | 25.0% |
| ! | TTGCTTAGGATAGTAAATTT+AGG | + | tig0026406:35804-35823 | Msa1428690:intron | 25.0% |
| ! | TTGATTGTGTAATTGTAGTT+TGG | + | tig0026406:35889-35908 | Msa1428690:intron | 25.0% |
| ! | TTACAATTACAACTAGCAAA+AGG | - | tig0026406:36212-36231 | None:intergenic | 25.0% |
| AGAAGATGAAGATTGAAAGA+GGG | - | tig0026406:33195-33214 | None:intergenic | 30.0% | |
| AAGAAGATGAAGATTGAAAG+AGG | - | tig0026406:33196-33215 | None:intergenic | 30.0% | |
| TTGCGATTTGTACAGTAATT+GGG | - | tig0026406:33223-33242 | None:intergenic | 30.0% | |
| ATTGCGATTTGTACAGTAAT+TGG | - | tig0026406:33224-33243 | None:intergenic | 30.0% | |
| !!! | CTTTTTTCGAAGAGGAATTA+CGG | - | tig0026406:33273-33292 | None:intergenic | 30.0% |
| AAGATCGAATCTTTAAACCA+TGG | + | tig0026406:33290-33309 | Msa1428690:exon | 30.0% | |
| ATTAACCTGAAGTTGTTCTA+CGG | - | tig0026406:33388-33407 | None:intergenic | 30.0% | |
| ! | TAGAACAACTTCAGGTTAAT+GGG | + | tig0026406:33388-33407 | Msa1428690:intron | 30.0% |
| ! | TTTTTGCACTTTGAACAATC+GGG | - | tig0026406:33483-33502 | None:intergenic | 30.0% |
| CAACAACGATAATAGTCAAT+TGG | - | tig0026406:33535-33554 | None:intergenic | 30.0% | |
| CTGTGTTTAATTGTATTCTC+AGG | + | tig0026406:33564-33583 | Msa1428690:intron | 30.0% | |
| TTAATTGTATTCTCAGGCAT+CGG | + | tig0026406:33570-33589 | Msa1428690:intron | 30.0% | |
| ATTAAGAAGCTTAAAGATGC+AGG | + | tig0026406:33610-33629 | Msa1428690:CDS | 30.0% | |
| AGTATAAGCAACAGATTCAA+CGG | - | tig0026406:33644-33663 | None:intergenic | 30.0% | |
| ATTTGCAAAAGATCTTTCCT+AGG | - | tig0026406:33667-33686 | None:intergenic | 30.0% | |
| !!! | TTTCAGGGTCCTTTATTTTT+AGG | + | tig0026406:33894-33913 | Msa1428690:intron | 30.0% |
| CAAACAGAGCCTAAAAATAA+AGG | - | tig0026406:33906-33925 | None:intergenic | 30.0% | |
| !!! | CTTTATTTTTAGGCTCTGTT+TGG | + | tig0026406:33904-33923 | Msa1428690:intron | 30.0% |
| AATAAGCTGAAAACAGCTTA+TGG | - | tig0026406:33976-33995 | None:intergenic | 30.0% | |
| TTAATACCCATCATTGATGA+AGG | + | tig0026406:34161-34180 | Msa1428690:intron | 30.0% | |
| TTTGTTTGTTTATTGACAGC+TGG | + | tig0026406:34207-34226 | Msa1428690:intron | 30.0% | |
| ATTGTAGAAGAGGAAATTCT+TGG | + | tig0026406:34719-34738 | Msa1428690:intron | 30.0% | |
| CAACGATGAATTGAATTACT+AGG | - | tig0026406:34989-35008 | None:intergenic | 30.0% | |
| AATGGACATTTAACAGAAAC+AGG | - | tig0026406:35146-35165 | None:intergenic | 30.0% | |
| TTTATGTTCCTTAATACGAC+AGG | + | tig0026406:35171-35190 | Msa1428690:intron | 30.0% | |
| TCTAAACAATACTGAGCAAA+AGG | - | tig0026406:35328-35347 | None:intergenic | 30.0% | |
| CAATTGCCAAGGTTATAATA+TGG | + | tig0026406:35353-35372 | Msa1428690:intron | 30.0% | |
| AAATCTTACAATACAACGCA+AGG | - | tig0026406:35458-35477 | None:intergenic | 30.0% | |
| !!! | TTTTGAGGCTTACATTTTGA+TGG | + | tig0026406:35536-35555 | Msa1428690:intron | 30.0% |
| AGCTGATTAAGATATTGCTT+AGG | + | tig0026406:35790-35809 | Msa1428690:intron | 30.0% | |
| ! | TAAAATCTGAAACCTTGCTT+CGG | - | tig0026406:36103-36122 | None:intergenic | 30.0% |
| ! | TCTGCAATAATGTTGAGTTT+TGG | + | tig0026406:36262-36281 | Msa1428690:three_prime_UTR | 30.0% |
| TGCGATTTGTACAGTAATTG+GGG | - | tig0026406:33222-33241 | None:intergenic | 35.0% | |
| !!! | GATTCGATCTTTTTTCGAAG+AGG | - | tig0026406:33281-33300 | None:intergenic | 35.0% |
| TTAACCTGAAGTTGTTCTAC+GGG | - | tig0026406:33387-33406 | None:intergenic | 35.0% | |
| ! | GTAGAACAACTTCAGGTTAA+TGG | + | tig0026406:33387-33406 | Msa1428690:intron | 35.0% |
| !!! | AACCCTTTTTTCTCTGATGA+TGG | + | tig0026406:33504-33523 | Msa1428690:intron | 35.0% |
| CTCCATCATCAGAGAAAAAA+GGG | - | tig0026406:33509-33528 | None:intergenic | 35.0% | |
| TAATTGTATTCTCAGGCATC+GGG | + | tig0026406:33571-33590 | Msa1428690:intron | 35.0% | |
| ! | AATCTGTTGCTTATACTCCT+AGG | + | tig0026406:33647-33666 | Msa1428690:CDS | 35.0% |
| TTCAATGATCTTGTCAACCT+TGG | - | tig0026406:33707-33726 | None:intergenic | 35.0% | |
| AGAAGACCTTCATCAATGAT+GGG | - | tig0026406:34170-34189 | None:intergenic | 35.0% | |
| TCGATTATTCAGATAACCAC+CGG | + | tig0026406:34285-34304 | Msa1428690:CDS | 35.0% | |
| AAGAGAGCTTGACAAGATAT+TGG | + | tig0026406:34311-34330 | Msa1428690:CDS | 35.0% | |
| TTGACAAGATATTGGAAGGT+TGG | + | tig0026406:34319-34338 | Msa1428690:intron | 35.0% | |
| !! | ATATTGCTGTTTCAATCAGG+TGG | + | tig0026406:34424-34443 | Msa1428690:intron | 35.0% |
| TCGAAATTCACCATACAACT+CGG | - | tig0026406:34470-34489 | None:intergenic | 35.0% | |
| TTGTATGGTGAATTTCGATC+TGG | + | tig0026406:34472-34491 | Msa1428690:CDS | 35.0% | |
| TGTATGGTGAATTTCGATCT+GGG | + | tig0026406:34473-34492 | Msa1428690:CDS | 35.0% | |
| AGGGAAACAAACAACATACT+TGG | - | tig0026406:34534-34553 | None:intergenic | 35.0% | |
| !! | CAAGAGGTATTGACACAAAA+GGG | - | tig0026406:34553-34572 | None:intergenic | 35.0% |
| !! | ACAAGAGGTATTGACACAAA+AGG | - | tig0026406:34554-34573 | None:intergenic | 35.0% |
| TAGTGACTCTATTGTAGAAG+AGG | + | tig0026406:34709-34728 | Msa1428690:intron | 35.0% | |
| ATGTCTATTTACATTTCCCC+TGG | - | tig0026406:34839-34858 | None:intergenic | 35.0% | |
| ATAACACTGATCATCAGTCA+CGG | + | tig0026406:35246-35265 | Msa1428690:CDS | 35.0% | |
| ! | AAACAAGGTATGACTTTTGC+TGG | + | tig0026406:35300-35319 | Msa1428690:intron | 35.0% |
| TGCTCAGTATTGTTTAGATC+TGG | + | tig0026406:35330-35349 | Msa1428690:intron | 35.0% | |
| AGCATTATTACCAGCTAAAC+AGG | + | tig0026406:35403-35422 | Msa1428690:intron | 35.0% | |
| ACAACGCAAGGCATAATAAA+TGG | - | tig0026406:35446-35465 | None:intergenic | 35.0% | |
| AGTGATGGTTGATCTGAATT+TGG | + | tig0026406:35487-35506 | Msa1428690:intron | 35.0% | |
| !! | CATTTTGATGGCTTATATGC+AGG | + | tig0026406:35548-35567 | Msa1428690:intron | 35.0% |
| ! | CTCTATAGGACAGATTTTTC+CGG | + | tig0026406:35604-35623 | Msa1428690:CDS | 35.0% |
| ATTTCGCTAAATGCATTTGC+CGG | - | tig0026406:35648-35667 | None:intergenic | 35.0% | |
| TGTGCATTACAATAGTGACA+TGG | - | tig0026406:35712-35731 | None:intergenic | 35.0% | |
| ! | TGTGTAATTGTAGTTTGGTG+TGG | + | tig0026406:35894-35913 | Msa1428690:intron | 35.0% |
| ! | CAAGTAGTTTCACAAGTTGA+CGG | + | tig0026406:35934-35953 | Msa1428690:CDS | 35.0% |
| ! | AGTGATTAGTTCTCCTTGTT+TGG | + | tig0026406:36071-36090 | Msa1428690:CDS | 35.0% |
| ! | GAAGCAAGGTTTCAGATTTT+AGG | + | tig0026406:36102-36121 | Msa1428690:CDS | 35.0% |
| GGTTCAGACAATGCTAAAAT+TGG | - | tig0026406:36156-36175 | None:intergenic | 35.0% | |
| !! | TGATAACGATAGTTTGTTGC+AGG | + | tig0026406:36303-36322 | Msa1428690:three_prime_UTR | 35.0% |
| !! | GATAACGATAGTTTGTTGCA+GGG | + | tig0026406:36304-36323 | Msa1428690:three_prime_UTR | 35.0% |
| GCGATTTGTACAGTAATTGG+GGG | - | tig0026406:33221-33240 | None:intergenic | 40.0% | |
| GTTGAATCTCTTCGGTTTCT+TGG | - | tig0026406:33353-33372 | None:intergenic | 40.0% | |
| GAAACCGAAGAGATTCAACA+CGG | + | tig0026406:33354-33373 | Msa1428690:CDS | 40.0% | |
| TGAAGTTGTTCTACGGGTAA+AGG | - | tig0026406:33381-33400 | None:intergenic | 40.0% | |
| TTTACCCGTAGAACAACTTC+AGG | + | tig0026406:33380-33399 | Msa1428690:CDS | 40.0% | |
| CCTCCATCATCAGAGAAAAA+AGG | - | tig0026406:33510-33529 | None:intergenic | 40.0% | |
| !!! | CCTTTTTTCTCTGATGATGG+AGG | + | tig0026406:33507-33526 | Msa1428690:intron | 40.0% |
| GTTGACAAGATCATTGAAGC+AGG | + | tig0026406:33709-33728 | Msa1428690:CDS | 40.0% | |
| CAGAAGACCTTCATCAATGA+TGG | - | tig0026406:34171-34190 | None:intergenic | 40.0% | |
| TTTATTGACAGCTGGTAAGC+TGG | + | tig0026406:34215-34234 | Msa1428690:intron | 40.0% | |
| CGATTATTCAGATAACCACC+GGG | + | tig0026406:34286-34305 | Msa1428690:CDS | 40.0% | |
| GAGCTTGACAAGATATTGGA+AGG | + | tig0026406:34315-34334 | Msa1428690:CDS | 40.0% | |
| TCAATCAGGTGGAATTGAGA+CGG | + | tig0026406:34435-34454 | Msa1428690:intron | 40.0% | |
| !! | GTAGAAAGCACTAGAACAAG+AGG | - | tig0026406:34569-34588 | None:intergenic | 40.0% |
| TTCTAGTGCTTTCTACCAAG+TGG | + | tig0026406:34573-34592 | Msa1428690:intron | 40.0% | |
| !! | CTACCAAGTGGTAACTTGTT+AGG | + | tig0026406:34585-34604 | Msa1428690:intron | 40.0% |
| TCTCCTAACAAGTTACCACT+TGG | - | tig0026406:34591-34610 | None:intergenic | 40.0% | |
| GTAGAAGAGGAAATTCTTGG+AGG | + | tig0026406:34722-34741 | Msa1428690:intron | 40.0% | |
| TTGTAGTTGCCACTAGATCA+AGG | + | tig0026406:35012-35031 | Msa1428690:intron | 40.0% | |
| GACTCTTACAGATAGCAGAT+AGG | + | tig0026406:35091-35110 | Msa1428690:CDS | 40.0% | |
| GTTCCTTAATACGACAGGTT+TGG | + | tig0026406:35176-35195 | Msa1428690:intron | 40.0% | |
| AGTCCAAACCTGTCGTATTA+AGG | - | tig0026406:35182-35201 | None:intergenic | 40.0% | |
| ACTGAATGGTCCTGATGTAT+TGG | + | tig0026406:35199-35218 | Msa1428690:CDS | 40.0% | |
| ! | GCGACATTTTCCAATACATC+AGG | - | tig0026406:35212-35231 | None:intergenic | 40.0% |
| ACTTGAAGCAGCTTCAATGA+TGG | + | tig0026406:35274-35293 | Msa1428690:CDS | 40.0% | |
| !! | CTTCAATGATGGTGGAAACA+AGG | + | tig0026406:35285-35304 | Msa1428690:CDS | 40.0% |
| TTTAGATCTGGCAATTGCCA+AGG | + | tig0026406:35342-35361 | Msa1428690:intron | 40.0% | |
| TATTACCAGCTAAACAGGCT+AGG | + | tig0026406:35408-35427 | Msa1428690:intron | 40.0% | |
| TAAAACCTAGCCTGTTTAGC+TGG | - | tig0026406:35416-35435 | None:intergenic | 40.0% | |
| TTTCGCTAAATGCATTTGCC+GGG | - | tig0026406:35647-35666 | None:intergenic | 40.0% | |
| ! | CTAATTTCTGAAGGCTTCTC+AGG | - | tig0026406:35672-35691 | None:intergenic | 40.0% |
| CCTCATCTGCTAATTTCTGA+AGG | - | tig0026406:35681-35700 | None:intergenic | 40.0% | |
| CCTTCAGAAATTAGCAGATG+AGG | + | tig0026406:35678-35697 | Msa1428690:CDS | 40.0% | |
| CGTCAACTTGTGAAACTACT+TGG | - | tig0026406:35936-35955 | None:intergenic | 40.0% | |
| ! | AGGTTTCAGATTTTAGGCGA+AGG | + | tig0026406:36108-36127 | Msa1428690:CDS | 40.0% |
| ! | GGTTTCAGATTTTAGGCGAA+GGG | + | tig0026406:36109-36128 | Msa1428690:CDS | 40.0% |
| ! | GTTTCAGATTTTAGGCGAAG+GGG | + | tig0026406:36110-36129 | Msa1428690:CDS | 40.0% |
| AGGGATTCAAAATGCGTCAG+AGG | - | tig0026406:33176-33195 | None:intergenic | 45.0% | |
| AGGACCGTGTTGAATCTCTT+CGG | - | tig0026406:33361-33380 | None:intergenic | 45.0% | |
| !! | CAAAGGTATCAGTGATGCCA+AGG | + | tig0026406:33687-33706 | Msa1428690:CDS | 45.0% |
| ATGAAGGTCTTCTGAGTCTG+TGG | + | tig0026406:34177-34196 | Msa1428690:intron | 45.0% | |
| CTAGCGCTAGTAAAACCCAT+AGG | - | tig0026406:34243-34262 | None:intergenic | 45.0% | |
| CAATCAGGTGGAATTGAGAC+GGG | + | tig0026406:34436-34455 | Msa1428690:intron | 45.0% | |
| GGTTCTATCACCGAGTTGTA+TGG | + | tig0026406:34457-34476 | Msa1428690:CDS | 45.0% | |
| TAGTTGCCACTAGATCAAGG+AGG | + | tig0026406:35015-35034 | Msa1428690:intron | 45.0% | |
| AGCTATGTACATAGATGCCG+AGG | + | tig0026406:35050-35069 | Msa1428690:CDS | 45.0% | |
| GCTATGTACATAGATGCCGA+GGG | + | tig0026406:35051-35070 | Msa1428690:CDS | 45.0% | |
| TAGATGCCGAGGGAACATTT+AGG | + | tig0026406:35061-35080 | Msa1428690:CDS | 45.0% | |
| TACGACAGGTTTGGACTGAA+TGG | + | tig0026406:35185-35204 | Msa1428690:intron | 45.0% | |
| TGAAGCAGCTTCAATGATGG+TGG | + | tig0026406:35277-35296 | Msa1428690:CDS | 45.0% | |
| ! | ACAGTGCTACTGCTCTCTAT+AGG | + | tig0026406:35590-35609 | Msa1428690:CDS | 45.0% |
| ! | AGGACAGATTTTTCCGGAAG+AGG | + | tig0026406:35610-35629 | Msa1428690:CDS | 45.0% |
| ! | GGACAGATTTTTCCGGAAGA+GGG | + | tig0026406:35611-35630 | Msa1428690:CDS | 45.0% |
| ! | GACAGATTTTTCCGGAAGAG+GGG | + | tig0026406:35612-35631 | Msa1428690:CDS | 45.0% |
| AATGTTGCCACCAATTGGCT+TGG | - | tig0026406:35986-36005 | None:intergenic | 45.0% | |
| ! | GCCAATTGGTGGCAACATTA+TGG | + | tig0026406:35987-36006 | Msa1428690:CDS | 45.0% |
| GCCATAATGTTGCCACCAAT+TGG | - | tig0026406:35991-36010 | None:intergenic | 45.0% | |
| ! | ACAAGGTTAGCTCTCAGGAA+AGG | + | tig0026406:36024-36043 | Msa1428690:CDS | 45.0% |
| ! | TTAGCTCTCAGGAAAGGAAG+AGG | + | tig0026406:36030-36049 | Msa1428690:CDS | 45.0% |
| TAGCTCTCAGGAAAGGAAGA+GGG | + | tig0026406:36031-36050 | Msa1428690:CDS | 45.0% | |
| ! | GATTTTAGGCGAAGGGGTTT+CGG | + | tig0026406:36116-36135 | Msa1428690:CDS | 45.0% |
| CTCAAGTCGTTGTTGCTCCA+TGG | - | tig0026406:33310-33329 | None:intergenic | 50.0% | |
| !! | TTCTCAGGCATCGGGTATAG+CGG | + | tig0026406:33579-33598 | Msa1428690:intron | 50.0% |
| CTTGTCAAGCTCTCTTGACC+CGG | - | tig0026406:34307-34326 | None:intergenic | 50.0% | |
| TTGCCACTAGATCAAGGAGG+AGG | + | tig0026406:35018-35037 | Msa1428690:CDS | 50.0% | |
| TCACCTCCTCCTTGATCTAG+TGG | - | tig0026406:35024-35043 | None:intergenic | 50.0% | |
| ACTAGATCAAGGAGGAGGTG+AGG | + | tig0026406:35023-35042 | Msa1428690:CDS | 50.0% | |
| CTAGATCAAGGAGGAGGTGA+GGG | + | tig0026406:35024-35043 | Msa1428690:CDS | 50.0% | |
| CTGAGGCCTAAATGTTCCCT+CGG | - | tig0026406:35070-35089 | None:intergenic | 50.0% | |
| GCTATCTGTAAGAGTCGCTG+AGG | - | tig0026406:35087-35106 | None:intergenic | 50.0% | |
| GACGGTTCTGCAATGTTTGC+TGG | + | tig0026406:35952-35971 | Msa1428690:CDS | 50.0% | |
| !! | CCACCAATTGGCTTGGTTTG+GGG | - | tig0026406:35979-35998 | None:intergenic | 50.0% |
| !! | GCCACCAATTGGCTTGGTTT+GGG | - | tig0026406:35980-35999 | None:intergenic | 50.0% |
| !! | TGCCACCAATTGGCTTGGTT+TGG | - | tig0026406:35981-36000 | None:intergenic | 50.0% |
| AGCTCTCAGGAAAGGAAGAG+GGG | + | tig0026406:36032-36051 | Msa1428690:CDS | 50.0% | |
| AGCTGGTAAGCTGGTGCCTA+TGG | + | tig0026406:34224-34243 | Msa1428690:intron | 55.0% | |
| GCTGGTAAGCTGGTGCCTAT+GGG | + | tig0026406:34225-34244 | Msa1428690:intron | 55.0% | |
| GGACCCCAAACCAAGCCAAT+TGG | + | tig0026406:35973-35992 | Msa1428690:CDS | 55.0% | |
| CCCCAAACCAAGCCAATTGG+TGG | + | tig0026406:35976-35995 | Msa1428690:CDS | 55.0% | |
| TGGCTCATGCAACCACGACA+AGG | + | tig0026406:36007-36026 | Msa1428690:CDS | 55.0% | |
| CCTGAGAGCTAACCTTGTCG+TGG | - | tig0026406:36022-36041 | None:intergenic | 55.0% | |
| ! | CCACGACAAGGTTAGCTCTC+AGG | + | tig0026406:36019-36038 | Msa1428690:CDS | 55.0% |
| GCTTCGGCTTCAGCCAAACA+AGG | - | tig0026406:36087-36106 | None:intergenic | 55.0% | |
| GTTTGGCTGAAGCCGAAGCA+AGG | + | tig0026406:36088-36107 | Msa1428690:CDS | 55.0% | |
| GTCAAGCTCTCTTGACCCGG+TGG | - | tig0026406:34304-34323 | None:intergenic | 60.0% | |
| GGCTGAAAGCTCCCCTCTTC+CGG | - | tig0026406:35626-35645 | None:intergenic | 60.0% | |
| GAAGAGGGGAGCTTTCAGCC+CGG | + | tig0026406:35626-35645 | Msa1428690:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026406 | gene | 33157 | 36377 | 33157 | ID=Msa1428690;Name=Msa1428690 |
| tig0026406 | mRNA | 33157 | 36377 | 33157 | ID=Msa1428690-mRNA-1;Parent=Msa1428690;Name=Msa1428690-mRNA-1;_AED=0.03;_eAED=0.03;_QI=152|1|1|1|1|1|8|225|341 |
| tig0026406 | exon | 33157 | 33401 | 33157 | ID=Msa1428690-mRNA-1:exon:6064;Parent=Msa1428690-mRNA-1 |
| tig0026406 | exon | 33586 | 33730 | 33586 | ID=Msa1428690-mRNA-1:exon:6065;Parent=Msa1428690-mRNA-1 |
| tig0026406 | exon | 34226 | 34336 | 34226 | ID=Msa1428690-mRNA-1:exon:6066;Parent=Msa1428690-mRNA-1 |
| tig0026406 | exon | 34443 | 34534 | 34443 | ID=Msa1428690-mRNA-1:exon:6067;Parent=Msa1428690-mRNA-1 |
| tig0026406 | exon | 35018 | 35112 | 35018 | ID=Msa1428690-mRNA-1:exon:6068;Parent=Msa1428690-mRNA-1 |
| tig0026406 | exon | 35193 | 35306 | 35193 | ID=Msa1428690-mRNA-1:exon:6069;Parent=Msa1428690-mRNA-1 |
| tig0026406 | exon | 35570 | 35699 | 35570 | ID=Msa1428690-mRNA-1:exon:6070;Parent=Msa1428690-mRNA-1 |
| tig0026406 | exon | 35907 | 36377 | 35907 | ID=Msa1428690-mRNA-1:exon:6071;Parent=Msa1428690-mRNA-1 |
| tig0026406 | five_prime_UTR | 33157 | 33308 | 33157 | ID=Msa1428690-mRNA-1:five_prime_utr;Parent=Msa1428690-mRNA-1 |
| tig0026406 | CDS | 33309 | 33401 | 33309 | ID=Msa1428690-mRNA-1:cds;Parent=Msa1428690-mRNA-1 |
| tig0026406 | CDS | 33586 | 33730 | 33586 | ID=Msa1428690-mRNA-1:cds;Parent=Msa1428690-mRNA-1 |
| tig0026406 | CDS | 34226 | 34336 | 34226 | ID=Msa1428690-mRNA-1:cds;Parent=Msa1428690-mRNA-1 |
| tig0026406 | CDS | 34443 | 34534 | 34443 | ID=Msa1428690-mRNA-1:cds;Parent=Msa1428690-mRNA-1 |
| tig0026406 | CDS | 35018 | 35112 | 35018 | ID=Msa1428690-mRNA-1:cds;Parent=Msa1428690-mRNA-1 |
| tig0026406 | CDS | 35193 | 35306 | 35193 | ID=Msa1428690-mRNA-1:cds;Parent=Msa1428690-mRNA-1 |
| tig0026406 | CDS | 35570 | 35699 | 35570 | ID=Msa1428690-mRNA-1:cds;Parent=Msa1428690-mRNA-1 |
| tig0026406 | CDS | 35907 | 36152 | 35907 | ID=Msa1428690-mRNA-1:cds;Parent=Msa1428690-mRNA-1 |
| tig0026406 | three_prime_UTR | 36153 | 36377 | 36153 | ID=Msa1428690-mRNA-1:three_prime_utr;Parent=Msa1428690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
