Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063880 | XP_013467905.1 | 71.121 | 883 | 189 | 10 | 38 | 896 | 27 | 867 | 0.0 | 1202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063880 | sp|F4IYF8|SYHC_ARATH | 48.673 | 904 | 367 | 18 | 39 | 895 | 30 | 883 | 0.0 | 745 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063880 | A0A072VJI1 | 71.121 | 883 | 189 | 10 | 38 | 896 | 27 | 867 | 0.0 | 1202 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011170 | Msa0063880 | 0.803047 | 4.199628e-49 | -8.615850e-47 |
| Msa0017070 | Msa0063880 | 0.806533 | 7.855753e-50 | -8.615850e-47 |
| Msa0039330 | Msa0063880 | 0.815907 | 7.268172e-52 | -8.615850e-47 |
| Msa0049960 | Msa0063880 | 0.800502 | 1.398567e-48 | -8.615850e-47 |
| Msa0063880 | Msa0063960 | 0.939812 | 6.768189e-100 | -8.615850e-47 |
| Msa0063880 | Msa0078900 | 0.807330 | 5.329063e-50 | -8.615850e-47 |
| Msa0063880 | Msa0101510 | 0.881174 | 2.987462e-70 | -8.615850e-47 |
| Msa0063880 | Msa0226890 | 0.801563 | 8.487199e-49 | -8.615850e-47 |
| Msa0063880 | Msa0251640 | 0.811576 | 6.533716e-51 | -8.615850e-47 |
| Msa0063880 | Msa0288100 | 0.819145 | 1.354114e-52 | -8.615850e-47 |
| Msa0063880 | Msa0345970 | 0.813282 | 2.770200e-51 | -8.615850e-47 |
| Msa0063880 | Msa0362810 | 0.800816 | 1.206658e-48 | -8.615850e-47 |
| Msa0063880 | Msa0490140 | 0.802943 | 4.412678e-49 | -8.615850e-47 |
| Msa0063880 | Msa0517110 | 0.800011 | 1.760247e-48 | -8.615850e-47 |
| Msa0063880 | Msa0585230 | 0.808823 | 2.562578e-50 | -8.615850e-47 |
| Msa0063880 | Msa0617640 | 0.801098 | 1.056802e-48 | -8.615850e-47 |
| Msa0063880 | Msa0626090 | 0.802300 | 5.990915e-49 | -8.615850e-47 |
| Msa0063880 | Msa0648880 | 0.800134 | 1.661793e-48 | -8.615850e-47 |
| Msa0063880 | Msa0663240 | 0.808903 | 2.463789e-50 | -8.615850e-47 |
| Msa0063880 | Msa0672690 | 0.846654 | 1.896105e-59 | -8.615850e-47 |
| Msa0063880 | Msa0688480 | 0.819798 | 9.613477e-53 | -8.615850e-47 |
| Msa0063880 | Msa0820850 | 0.816443 | 5.515570e-52 | -8.615850e-47 |
| Msa0063880 | Msa0842620 | 0.803094 | 4.106837e-49 | -8.615850e-47 |
| Msa0063880 | Msa0861130 | 0.815806 | 7.653505e-52 | -8.615850e-47 |
| Msa0063880 | Msa0931520 | 0.849090 | 4.040981e-60 | -8.615850e-47 |
| Msa0063880 | Msa0995710 | 0.801119 | 1.046312e-48 | -8.615850e-47 |
| Msa0063880 | Msa1013220 | 0.808521 | 2.973288e-50 | -8.615850e-47 |
| Msa0063880 | Msa1014540 | 0.813842 | 2.085196e-51 | -8.615850e-47 |
| Msa0063880 | Msa1015790 | 0.808978 | 2.373856e-50 | -8.615850e-47 |
| Msa0063880 | Msa1054990 | 0.811190 | 7.925723e-51 | -8.615850e-47 |
| Msa0063880 | Msa1059570 | 0.804373 | 2.228947e-49 | -8.615850e-47 |
| Msa0063880 | Msa1075220 | -0.812560 | 3.986845e-51 | -8.615850e-47 |
| Msa0063880 | Msa1082500 | 0.802196 | 6.292319e-49 | -8.615850e-47 |
| Msa0063880 | Msa1116130 | -0.810146 | 1.332365e-50 | -8.615850e-47 |
| Msa0063880 | Msa1162550 | -0.815052 | 1.126070e-51 | -8.615850e-47 |
| Msa0063880 | Msa1228590 | 0.829068 | 6.330490e-55 | -8.615850e-47 |
| Msa0063880 | Msa1246510 | 0.804445 | 2.152615e-49 | -8.615850e-47 |
| Msa0063880 | Msa1284680 | 0.803795 | 2.938882e-49 | -8.615850e-47 |
| Msa0063880 | Msa1288420 | 0.800959 | 1.128583e-48 | -8.615850e-47 |
| Msa0063880 | Msa1357530 | 0.801167 | 1.022926e-48 | -8.615850e-47 |
| Msa0063880 | Msa1359040 | 0.807162 | 5.783377e-50 | -8.615850e-47 |
| Msa0063880 | Msa1390050 | 0.801925 | 7.154811e-49 | -8.615850e-47 |
| Msa0063880 | Msa1411020 | 0.827209 | 1.775224e-54 | -8.615850e-47 |
| Msa0063880 | Msa1420490 | 0.823983 | 1.032472e-53 | -8.615850e-47 |
| Msa0063880 | Msa1420820 | 0.811071 | 8.407818e-51 | -8.615850e-47 |
| Msa0063880 | Msa1423390 | 0.822464 | 2.336442e-53 | -8.615850e-47 |
| Msa0063880 | Msa1424290 | 0.822925 | 1.824419e-53 | -8.615850e-47 |
| Msa0063880 | Msa1434350 | 0.823291 | 1.498858e-53 | -8.615850e-47 |
| Msa0063880 | Msa1439320 | 0.823779 | 1.152483e-53 | -8.615850e-47 |
| Msa0063880 | Msa1440370 | 0.818685 | 1.722698e-52 | -8.615850e-47 |
| Msa0063880 | Msa1440810 | 0.822229 | 2.648307e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063880 | MtrunA17_Chr1g0177811 | 71.121 | 883 | 189 | 10 | 38 | 896 | 27 | 867 | 0.0 | 1202 |
| Msa0063880 | MtrunA17_Chr5g0443461 | 65.468 | 139 | 21 | 1 | 440 | 578 | 1 | 112 | 3.76e-51 | 179 |
| Msa0063880 | MtrunA17_Chr5g0443461 | 83.696 | 92 | 15 | 0 | 654 | 745 | 113 | 204 | 5.15e-44 | 159 |
| Msa0063880 | MtrunA17_Chr7g0264611 | 24.892 | 462 | 288 | 11 | 429 | 882 | 113 | 523 | 9.35e-30 | 124 |
| Msa0063880 | MtrunA17_Chr4g0033521 | 26.013 | 469 | 279 | 20 | 442 | 889 | 793 | 1214 | 1.77e-22 | 104 |
| Msa0063880 | MtrunA17_Chr4g0073411 | 69.811 | 53 | 16 | 0 | 512 | 564 | 2 | 54 | 3.15e-18 | 79.3 |
| Msa0063880 | MtrunA17_Chr1g0177821 | 45.161 | 93 | 11 | 1 | 654 | 746 | 44 | 96 | 1.97e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063880 | AT3G02760.2 | 48.673 | 904 | 367 | 18 | 39 | 895 | 30 | 883 | 0.0 | 745 |
| Msa0063880 | AT3G02760.1 | 48.673 | 904 | 367 | 18 | 39 | 895 | 30 | 883 | 0.0 | 745 |
| Msa0063880 | AT3G46100.1 | 24.731 | 465 | 285 | 12 | 429 | 882 | 72 | 482 | 2.61e-31 | 129 |
| Msa0063880 | AT3G59410.5 | 26.398 | 447 | 271 | 16 | 442 | 869 | 796 | 1203 | 4.66e-27 | 119 |
| Msa0063880 | AT3G59410.4 | 26.398 | 447 | 271 | 16 | 442 | 869 | 797 | 1204 | 4.73e-27 | 119 |
| Msa0063880 | AT3G59410.1 | 26.398 | 447 | 271 | 16 | 442 | 869 | 796 | 1203 | 4.89e-27 | 119 |
| Msa0063880 | AT3G59410.3 | 26.398 | 447 | 271 | 16 | 442 | 869 | 796 | 1203 | 4.89e-27 | 119 |
| Msa0063880 | AT3G59410.2 | 26.398 | 447 | 271 | 16 | 442 | 869 | 820 | 1227 | 4.96e-27 | 119 |
| Msa0063880 | AT5G03406.1 | 28.342 | 187 | 127 | 4 | 429 | 609 | 72 | 257 | 5.53e-16 | 79.3 |
Find 181 sgRNAs with CRISPR-Local
Find 401 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATTGATTTGTTAATATT+TGG | 0.064849 | 1_2:-24631183 | Msa0063880:three_prime_UTR |
| GAAGTGCTAGTGAGCATATT+AGG | 0.179665 | 1_2:-24631504 | Msa0063880:CDS |
| TTCTTGTAAGGTTAGGAAAT+TGG | 0.186135 | 1_2:+24637068 | None:intergenic |
| GAGAGTATTTGCCATATTAA+TGG | 0.210638 | 1_2:-24631906 | Msa0063880:CDS |
| TTCTGTAGACCTTAGCTATT+TGG | 0.213723 | 1_2:+24635009 | None:intergenic |
| ATATTTGAAGCTGTTCTTAA+AGG | 0.233868 | 1_2:-24632791 | Msa0063880:CDS |
| GTCTTTGGCAATGTCGTTAA+AGG | 0.237281 | 1_2:-24636521 | Msa0063880:CDS |
| ACTGGGTGTTTCTTCGGTTT+TGG | 0.247599 | 1_2:-24636884 | Msa0063880:CDS |
| CATCAATTGACAGGGTTGTT+AGG | 0.257926 | 1_2:-24636859 | Msa0063880:CDS |
| AGTCTACGTAGTAATGTTAA+AGG | 0.263710 | 1_2:+24632971 | None:intergenic |
| TCTTGTAAGGTTAGGAAATT+GGG | 0.273420 | 1_2:+24637069 | None:intergenic |
| TCCGGCTGTTGGTTTGAGTC+TGG | 0.287451 | 1_2:-24631936 | Msa0063880:CDS |
| AAGAGGAAGAAGGCTGGTTT+GGG | 0.296266 | 1_2:-24636214 | Msa0063880:CDS |
| AACAGCCGGAACTTCCTTCT+TGG | 0.296717 | 1_2:+24631949 | None:intergenic |
| TTACAGCTCATGGGATGATT+AGG | 0.298039 | 1_2:-24636648 | Msa0063880:CDS |
| CTACGAACACTATGTGTTAC+TGG | 0.304332 | 1_2:-24636902 | Msa0063880:CDS |
| TATTTGAAGCTGTTCTTAAA+GGG | 0.307450 | 1_2:-24632790 | Msa0063880:CDS |
| GGCAATGTCGTTAAAGGTAT+TGG | 0.309334 | 1_2:-24636515 | Msa0063880:CDS |
| GAAGAGGAAGAAGGCTGGTT+TGG | 0.323384 | 1_2:-24636215 | Msa0063880:CDS |
| GGACGATATGATAACTTGAT+AGG | 0.327531 | 1_2:-24631998 | Msa0063880:CDS |
| GAAACTCTCATGGGAAAATA+TGG | 0.327639 | 1_2:-24635381 | Msa0063880:CDS |
| CAACTTCCTCTTTAGAACTA+TGG | 0.328050 | 1_2:+24636752 | None:intergenic |
| GTGTTGTGTGTTGTTGTCTT+TGG | 0.328526 | 1_2:-24636536 | Msa0063880:CDS |
| AGGGGTCTTGATTATTATAC+TGG | 0.328727 | 1_2:-24632818 | Msa0063880:CDS |
| CAATGTGACTTTGATATTGC+TGG | 0.341855 | 1_2:-24634948 | Msa0063880:CDS |
| TAAAATTACCTTTGGAACCT+TGG | 0.345191 | 1_2:+24635994 | None:intergenic |
| AATAAAGAGAAACTTACTAT+TGG | 0.345413 | 1_2:-24636571 | Msa0063880:CDS |
| TCGTCGCCATGATTTCTATT+CGG | 0.347549 | 1_2:-24636446 | Msa0063880:CDS |
| AAATTGATTTGTTAATATTT+GGG | 0.347867 | 1_2:-24631182 | Msa0063880:three_prime_UTR |
| GGGCTTTAAATAAAATTTCC+AGG | 0.351718 | 1_2:+24632891 | None:intergenic |
| CGTCGCCATGATTTCTATTC+GGG | 0.359923 | 1_2:-24636445 | Msa0063880:CDS |
| GCAATGTCGTTAAAGGTATT+GGG | 0.370057 | 1_2:-24636514 | Msa0063880:CDS |
| GAAGGCTCTGGTTTCTTGTA+AGG | 0.372675 | 1_2:+24637056 | None:intergenic |
| AAAATTACCTTTGGAACCTT+GGG | 0.372746 | 1_2:+24635995 | None:intergenic |
| TGCTTGATGAGCTGAAGCTT+GGG | 0.373232 | 1_2:-24634872 | Msa0063880:CDS |
| ATGTCCAACTGATGCTAGTT+TGG | 0.373563 | 1_2:-24636398 | Msa0063880:CDS |
| ATAATAAAATATAAGTATAA+AGG | 0.375158 | 1_2:+24633951 | None:intergenic |
| GAGTACCTCCTGAAAAGTTT+AGG | 0.386819 | 1_2:-24634073 | Msa0063880:CDS |
| CCGGCTGTTGGTTTGAGTCT+GGG | 0.386821 | 1_2:-24631935 | Msa0063880:CDS |
| CTCTGGTTTCTTGTAAGGTT+AGG | 0.387298 | 1_2:+24637061 | None:intergenic |
| GATCCTCGAATGCAATGATT+TGG | 0.388269 | 1_2:+24636618 | None:intergenic |
| GTCGTTAAAGGTATTGGGTC+AGG | 0.391885 | 1_2:-24636509 | Msa0063880:CDS |
| TTGGAACCTTGGGCTTTCTT+CGG | 0.392592 | 1_2:+24636005 | None:intergenic |
| AAGTGCTAGTGAGCATATTA+GGG | 0.392762 | 1_2:-24631503 | Msa0063880:CDS |
| TCCGAGACAGCTGACAGAAT+TGG | 0.393164 | 1_2:-24633019 | Msa0063880:CDS |
| TGTGTTACTGGGTGTTTCTT+CGG | 0.394810 | 1_2:-24636890 | Msa0063880:CDS |
| GAAATCATGGCGACGATCAA+TGG | 0.395346 | 1_2:+24636453 | None:intergenic |
| GCTTAATGATTCTAAGTTTG+TGG | 0.398316 | 1_2:-24636704 | Msa0063880:CDS |
| ATAAAGAGAAACTTACTATT+GGG | 0.398802 | 1_2:-24636570 | Msa0063880:CDS |
| TTCTAAAGTACTACAAATGA+TGG | 0.402253 | 1_2:+24631214 | None:intergenic |
| TCGGGTGAAAGCAGAATTCT+TGG | 0.407690 | 1_2:-24631433 | Msa0063880:CDS |
| TACAGCTCATGGGATGATTA+GGG | 0.409069 | 1_2:-24636647 | Msa0063880:CDS |
| GATCGAAACGATTTCGATGT+TGG | 0.412552 | 1_2:-24636949 | Msa0063880:CDS |
| TCAAAGTGCTTAGATCTTCC+AGG | 0.420063 | 1_2:+24631405 | None:intergenic |
| CTTAATGATTCTAAGTTTGT+GGG | 0.422461 | 1_2:-24636703 | Msa0063880:CDS |
| CGAACATATAAGAAAAGAAA+TGG | 0.427037 | 1_2:-24634009 | Msa0063880:CDS |
| GGGACACATGATTATGCTAA+TGG | 0.427745 | 1_2:-24635501 | Msa0063880:CDS |
| ATCAATTGACAGGGTTGTTA+GGG | 0.428033 | 1_2:-24636858 | Msa0063880:CDS |
| GGCGTTAAAGCTCGATGTTA+CGG | 0.429117 | 1_2:-24636803 | Msa0063880:CDS |
| CAGGCATGGCGCCACAGCCT+TGG | 0.433147 | 1_2:-24635427 | Msa0063880:CDS |
| TTGGTGAACTGTGGGATGCT+CGG | 0.433609 | 1_2:-24631452 | Msa0063880:CDS |
| AATGGAACAAAATCAAAATC+AGG | 0.436145 | 1_2:-24631888 | Msa0063880:intron |
| TGGTTCCAAGAAGGAAGTTC+CGG | 0.436933 | 1_2:-24631954 | Msa0063880:CDS |
| GCTCACTAGCACTTCTGTCT+TGG | 0.439541 | 1_2:+24631512 | None:intergenic |
| GATCCAAGTTGAGTTGAATT+CGG | 0.441552 | 1_2:-24636599 | Msa0063880:CDS |
| GGCGGTGGAAATGGCGTAAA+CGG | 0.446499 | 1_2:+24637181 | None:intergenic |
| TCCAATTCTGTCAGCTGTCT+CGG | 0.449208 | 1_2:+24633018 | None:intergenic |
| ACCCTTGCCGCCAAGTGTTA+CGG | 0.450135 | 1_2:+24637223 | None:intergenic |
| ATGATGTTGTTAGGGATAAT+CGG | 0.451698 | 1_2:+24637124 | None:intergenic |
| TGATTCTAAGTTTGTGGGGA+GGG | 0.456835 | 1_2:-24636698 | Msa0063880:CDS |
| GATAACTTGATAGGGATGTT+TGG | 0.460699 | 1_2:-24631989 | Msa0063880:CDS |
| TTGCTTGATGAGCTGAAGCT+TGG | 0.463351 | 1_2:-24634873 | Msa0063880:CDS |
| TGGTGAACTGTGGGATGCTC+GGG | 0.466260 | 1_2:-24631451 | Msa0063880:CDS |
| CGCCGTAACACTTGGCGGCA+AGG | 0.467663 | 1_2:-24637225 | Msa0063880:CDS |
| ATTCGCAGATATTGAAGACT+TGG | 0.467859 | 1_2:-24636120 | Msa0063880:CDS |
| GCAGAATTCTTGGTCCATCC+TGG | 0.472117 | 1_2:-24631423 | Msa0063880:CDS |
| TGTGACATTGTTACAGCTCA+TGG | 0.474114 | 1_2:-24636658 | Msa0063880:CDS |
| GCCGTAACACTTGGCGGCAA+GGG | 0.476345 | 1_2:-24637224 | Msa0063880:CDS |
| CTCAACAAACTCCTCCTCTT+CGG | 0.480139 | 1_2:-24637021 | Msa0063880:CDS |
| ACTTGACAGTTCCGTTTGCT+AGG | 0.486436 | 1_2:-24635070 | Msa0063880:CDS |
| GTTTCTCGCAATTCAAAGAC+AGG | 0.488950 | 1_2:+24635399 | None:intergenic |
| AGTCACATTGATAAAATTCA+CGG | 0.490294 | 1_2:+24634961 | None:intergenic |
| CGTAGCTGTAGGTGCAAAGC+TGG | 0.496720 | 1_2:-24631475 | Msa0063880:CDS |
| TGAATCAAAACGCCTTGATA+AGG | 0.496829 | 1_2:-24632864 | Msa0063880:CDS |
| AAGAAGGCTGGTTTGGGGAA+AGG | 0.496855 | 1_2:-24636208 | Msa0063880:CDS |
| GCCGCCAAGTGTTACGGCGG+AGG | 0.496894 | 1_2:+24637229 | None:intergenic |
| GAGGAGTTTGTTGAGAAGAA+CGG | 0.497407 | 1_2:+24637029 | None:intergenic |
| GTTGAGAAGAACGGTTAAGA+AGG | 0.499310 | 1_2:+24637038 | None:intergenic |
| ATCCCTTGGATAATAGTTGT+TGG | 0.499561 | 1_2:-24631363 | Msa0063880:CDS |
| GTCTACGTAGTAATGTTAAA+GGG | 0.503254 | 1_2:+24632972 | None:intergenic |
| GATCCGAATTCAACTCAACT+TGG | 0.503803 | 1_2:+24636596 | None:intergenic |
| GACTGCTTATGTTGCACTTG+AGG | 0.505835 | 1_2:-24636260 | Msa0063880:CDS |
| TCTCTTCGATGTCTTTAAGA+AGG | 0.506720 | 1_2:-24636422 | Msa0063880:CDS |
| CTTCTTCGTTTCATTCAACT+CGG | 0.510499 | 1_2:+24636234 | None:intergenic |
| ATGCCAAATCATTGCATTCG+AGG | 0.510871 | 1_2:-24636621 | Msa0063880:CDS |
| GTTGTTAGGGTTTGCTGACG+TGG | 0.520717 | 1_2:-24636845 | Msa0063880:CDS |
| ACTAGCACTTCTGTCTTGGT+TGG | 0.529009 | 1_2:+24631516 | None:intergenic |
| TCCTCCGCCGTAACACTTGG+CGG | 0.529260 | 1_2:-24637230 | Msa0063880:CDS |
| AAGAAGGAAGTTCCGGCTGT+TGG | 0.532514 | 1_2:-24631947 | Msa0063880:CDS |
| AGTGCTTTCTTAGAAAATGC+TGG | 0.533444 | 1_2:-24632935 | Msa0063880:CDS |
| GACGATATGATAACTTGATA+GGG | 0.536417 | 1_2:-24631997 | Msa0063880:CDS |
| TAAAAGGTACCAAATAGCTA+AGG | 0.537218 | 1_2:-24635018 | Msa0063880:CDS |
| ATCAAAACGCCTTGATAAGG+TGG | 0.538247 | 1_2:-24632861 | Msa0063880:CDS |
| TGATGATGATGATGTTGTTA+GGG | 0.538456 | 1_2:+24637116 | None:intergenic |
| AGGGATGTTTGGTGTAAAGA+AGG | 0.542043 | 1_2:-24631978 | Msa0063880:CDS |
| ATGTTTGGTGTAAAGAAGGA+TGG | 0.543864 | 1_2:-24631974 | Msa0063880:CDS |
| CACATAGTGTTCGTAGTGAT+CGG | 0.545106 | 1_2:+24636909 | None:intergenic |
| ATGTCCTCCGCCGTAACACT+TGG | 0.548755 | 1_2:-24637233 | Msa0063880:CDS |
| AGAGACCCGAATAGAAATCA+TGG | 0.549974 | 1_2:+24636440 | None:intergenic |
| AAGGTTGGTTCAATTGCTGC+TGG | 0.552287 | 1_2:-24632022 | Msa0063880:CDS |
| TGAATTGCGAGAAACTCTCA+TGG | 0.552612 | 1_2:-24635391 | Msa0063880:CDS |
| TAAGGTTAGGAAATTGGGGA+TGG | 0.552746 | 1_2:+24637074 | None:intergenic |
| TGAGTGCGGATGAATCGATT+CGG | 0.553690 | 1_2:+24637148 | None:intergenic |
| GTAGCTACAAACCTAGCAAA+CGG | 0.554905 | 1_2:+24635059 | None:intergenic |
| CTTGTAAGGTTAGGAAATTG+GGG | 0.555254 | 1_2:+24637070 | None:intergenic |
| CATAGTTCTAAAGAGGAAGT+TGG | 0.560501 | 1_2:-24636751 | Msa0063880:CDS |
| GTGACATTGTTACAGCTCAT+GGG | 0.561403 | 1_2:-24636657 | Msa0063880:CDS |
| TTAACCAAACTAGCATCAGT+TGG | 0.563715 | 1_2:+24636394 | None:intergenic |
| AAGAACGGTTAAGAAGGCTC+TGG | 0.567967 | 1_2:+24637044 | None:intergenic |
| TACGAACACTATGTGTTACT+GGG | 0.568099 | 1_2:-24636901 | Msa0063880:CDS |
| CCCAGACTCAAACCAACAGC+CGG | 0.569889 | 1_2:+24631935 | None:intergenic |
| AATTTGATGAATTCTGGTGA+TGG | 0.570421 | 1_2:-24636775 | Msa0063880:CDS |
| GGCGAACAAGAAATAAAAGA+AGG | 0.570674 | 1_2:-24631342 | Msa0063880:CDS |
| GACAGGTGTATCCAAGGCTG+TGG | 0.572000 | 1_2:+24635416 | None:intergenic |
| TTCGCAGATATTGAAGACTT+GGG | 0.574189 | 1_2:-24636119 | Msa0063880:CDS |
| TCGCCAACAACTATTATCCA+AGG | 0.574946 | 1_2:+24631360 | None:intergenic |
| TTGTCGAGGAGCTTCAGAAA+CGG | 0.578470 | 1_2:-24631254 | Msa0063880:CDS |
| TTGGTGTTGCTGCTTCTATG+AGG | 0.579684 | 1_2:-24636732 | Msa0063880:CDS |
| TTCGCTTGTGTGGAAAATTG+TGG | 0.581114 | 1_2:-24636296 | Msa0063880:CDS |
| TCTAAAGTACTACAAATGAT+GGG | 0.582054 | 1_2:+24631215 | None:intergenic |
| ACGAAGAAGAGGAAGAAGGC+TGG | 0.582892 | 1_2:-24636220 | Msa0063880:CDS |
| GCAACTGAAAAGCATGGAGA+CGG | 0.585057 | 1_2:-24631313 | Msa0063880:CDS |
| TTTGAAGCTGTTCTTAAAGG+GGG | 0.586992 | 1_2:-24632788 | Msa0063880:CDS |
| TGATGGCCATAGTTCTAAAG+AGG | 0.587996 | 1_2:-24636758 | Msa0063880:CDS |
| TTCAAAGACAGGTGTATCCA+AGG | 0.588118 | 1_2:+24635410 | None:intergenic |
| CAAAGCTGGTTGGTGAACTG+TGG | 0.592463 | 1_2:-24631461 | Msa0063880:CDS |
| CACGGTGCAACTGAAAAGCA+TGG | 0.592832 | 1_2:-24631319 | Msa0063880:CDS |
| ACTGAAAGTAAAAGATCTCG+TGG | 0.593093 | 1_2:-24636041 | Msa0063880:CDS |
| AAATAGCTAAGGTCTACAGA+AGG | 0.596075 | 1_2:-24635007 | Msa0063880:CDS |
| GCTTGATGAGCTGAAGCTTG+GGG | 0.597163 | 1_2:-24634871 | Msa0063880:CDS |
| GTTGGTTCAATTGCTGCTGG+TGG | 0.597616 | 1_2:-24632019 | Msa0063880:CDS |
| CCGGTGGGTAATTACCGAAG+AGG | 0.598392 | 1_2:+24637007 | None:intergenic |
| CAACTGAAAAGCATGGAGAC+GGG | 0.599175 | 1_2:-24631312 | Msa0063880:CDS |
| ATTTGAAGCTGTTCTTAAAG+GGG | 0.600341 | 1_2:-24632789 | Msa0063880:CDS |
| ATGATTCTAAGTTTGTGGGG+AGG | 0.601337 | 1_2:-24636699 | Msa0063880:CDS |
| TTAATGATTCTAAGTTTGTG+GGG | 0.601782 | 1_2:-24636702 | Msa0063880:CDS |
| CCTCTTCGGTAATTACCCAC+CGG | 0.602372 | 1_2:-24637007 | Msa0063880:CDS |
| CTACGTAGACTTAAACAAGA+AGG | 0.602810 | 1_2:-24632959 | Msa0063880:CDS |
| TGAAACGAAGAAGAGGAAGA+AGG | 0.607333 | 1_2:-24636224 | Msa0063880:CDS |
| TCGTTAAAGGTATTGGGTCA+GGG | 0.611379 | 1_2:-24636508 | Msa0063880:CDS |
| CGCCAACAACTATTATCCAA+GGG | 0.611468 | 1_2:+24631361 | None:intergenic |
| AGTTGAATGAAACGAAGAAG+AGG | 0.611910 | 1_2:-24636231 | Msa0063880:CDS |
| AAGAAAGCCCAAGGTTCCAA+AGG | 0.614334 | 1_2:-24636002 | Msa0063880:intron |
| GAATTGCGAGAAACTCTCAT+GGG | 0.614984 | 1_2:-24635390 | Msa0063880:CDS |
| AGTATAATAATCAAGACCCC+TGG | 0.615200 | 1_2:+24632820 | None:intergenic |
| CCATGCTGTAGGTGGAAGAG+AGG | 0.618363 | 1_2:-24633049 | Msa0063880:intron |
| AAAGCTGGTTGGTGAACTGT+GGG | 0.621037 | 1_2:-24631460 | Msa0063880:CDS |
| AATCATAGAAAGTTACTCGA+TGG | 0.621157 | 1_2:-24634113 | Msa0063880:CDS |
| CAGTTTAAGCACAACAGAAG+TGG | 0.621980 | 1_2:+24633917 | None:intergenic |
| TGTTGATGCATTGAATGACC+TGG | 0.626342 | 1_2:-24632909 | Msa0063880:CDS |
| AAAGAAGGATGGTTCCAAGA+AGG | 0.627412 | 1_2:-24631963 | Msa0063880:CDS |
| AAATTTATCATACACCCCAC+TGG | 0.628116 | 1_2:+24636342 | None:intergenic |
| TTTGACTTGAGTCTTGCCAG+GGG | 0.628193 | 1_2:-24632836 | Msa0063880:CDS |
| TTAGGGAGTGACGTAGCTGT+AGG | 0.632112 | 1_2:-24631486 | Msa0063880:CDS |
| TTGTGTGGAAAATTGTGGCG+TGG | 0.634499 | 1_2:-24636291 | Msa0063880:CDS |
| ACAAGAAATAAAAGAAGGCA+CGG | 0.636666 | 1_2:-24631337 | Msa0063880:CDS |
| TGTGTGGAAAATTGTGGCGT+GGG | 0.637597 | 1_2:-24636290 | Msa0063880:CDS |
| GTGGGTAATTACCGAAGAGG+AGG | 0.637998 | 1_2:+24637010 | None:intergenic |
| AGTGCTTAGATCTTCCAGGA+TGG | 0.645431 | 1_2:+24631409 | None:intergenic |
| GATGGCATGATGCAAATATG+TGG | 0.647880 | 1_2:-24634095 | Msa0063880:CDS |
| AATAGCTAAGGTCTACAGAA+GGG | 0.648786 | 1_2:-24635006 | Msa0063880:CDS |
| TAGGGATAATCGGTTGAGTG+CGG | 0.649309 | 1_2:+24637134 | None:intergenic |
| GCTGTAGGTGCAAAGCTGGT+TGG | 0.649979 | 1_2:-24631471 | Msa0063880:CDS |
| AAAAGAAATGGTGAGGACTG+AGG | 0.650016 | 1_2:-24633997 | Msa0063880:CDS |
| TGAAAGCCGAAGAAAGCCCA+AGG | 0.653146 | 1_2:-24636011 | Msa0063880:CDS |
| GCAGATATTGAAGACTTGGG+TGG | 0.657029 | 1_2:-24636116 | Msa0063880:CDS |
| AGAGGAAGAAGGCTGGTTTG+GGG | 0.659481 | 1_2:-24636213 | Msa0063880:CDS |
| ATATAAGAAAAGAAATGGTG+AGG | 0.660569 | 1_2:-24634004 | Msa0063880:CDS |
| GACAACAACACACAACACAT+AGG | 0.667110 | 1_2:+24636541 | None:intergenic |
| GGTGGAAATGGCGTAAACGG+TGG | 0.690940 | 1_2:+24637184 | None:intergenic |
| CTTGCCGCCAAGTGTTACGG+CGG | 0.696144 | 1_2:+24637226 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTAAAAATCAG+GGG | - | chr1_2:24632882-24632901 | Msa0063880:CDS | 10.0% |
| !! | TTAAATTATAGAAATAAACT+GGG | + | chr1_2:24634105-24634124 | None:intergenic | 10.0% |
| !!! | AAATTGATTTGTTAATATTT+GGG | - | chr1_2:24637221-24637240 | Msa0063880:CDS | 10.0% |
| !!! | AGTTTGGTTAATAATTTTAA+CGG | - | chr1_2:24632021-24632040 | Msa0063880:CDS | 15.0% |
| !!! | ATAATTTGACATCTTTTAAA+AGG | - | chr1_2:24633369-24633388 | Msa0063880:intron | 15.0% |
| !!! | TCTAAAACCATAATTTTTTA+TGG | - | chr1_2:24633660-24633679 | Msa0063880:intron | 15.0% |
| !! | GTTAAATTATAGAAATAAAC+TGG | + | chr1_2:24634106-24634125 | None:intergenic | 15.0% |
| !!! | TGCAACTATTTTTTTATTTA+TGG | + | chr1_2:24635125-24635144 | None:intergenic | 15.0% |
| !! | ATTTCTTATGTTTACTAATT+TGG | - | chr1_2:24635318-24635337 | Msa0063880:intron | 15.0% |
| !!! | GAAATATTTCTTTTTTAACA+CGG | + | chr1_2:24636577-24636596 | None:intergenic | 15.0% |
| !! | AGAAATATTTCTTATTATTC+TGG | - | chr1_2:24636586-24636605 | Msa0063880:CDS | 15.0% |
| !! | GAAATATTTCTTATTATTCT+GGG | - | chr1_2:24636587-24636606 | Msa0063880:CDS | 15.0% |
| !!! | GAAATTGATTTGTTAATATT+TGG | - | chr1_2:24637220-24637239 | Msa0063880:CDS | 15.0% |
| !! | AATAAAGAGAAACTTACTAT+TGG | - | chr1_2:24631832-24631851 | Msa0063880:intron | 20.0% |
| !! | ATAAAGAGAAACTTACTATT+GGG | - | chr1_2:24631833-24631852 | Msa0063880:intron | 20.0% |
| !! | AGTAAAAATGTATTGAATTC+AGG | + | chr1_2:24632345-24632364 | None:intergenic | 20.0% |
| !! | GAATCAAATAAAATTACCTT+TGG | + | chr1_2:24632420-24632439 | None:intergenic | 20.0% |
| !!! | GATTCTTAATTTTAACACAT+TGG | + | chr1_2:24632566-24632585 | None:intergenic | 20.0% |
| !!! | TTCTAAAATCATTCATCAAA+AGG | - | chr1_2:24632795-24632814 | Msa0063880:CDS | 20.0% |
| !!! | TCTAAAATCATTCATCAAAA+GGG | - | chr1_2:24632796-24632815 | Msa0063880:CDS | 20.0% |
| !!! | TAATAAAAGAAGTTTTTGAC+AGG | - | chr1_2:24632957-24632976 | Msa0063880:CDS | 20.0% |
| !!! | TTTTCCTAGATATTTTTATC+CGG | + | chr1_2:24633159-24633178 | None:intergenic | 20.0% |
| !!! | AACCAATAAATTTTATAGCA+GGG | + | chr1_2:24633588-24633607 | None:intergenic | 20.0% |
| !!! | AAACCAATAAATTTTATAGC+AGG | + | chr1_2:24633589-24633608 | None:intergenic | 20.0% |
| !! | TGTATTATTACTATATCTGT+TGG | - | chr1_2:24633737-24633756 | Msa0063880:intron | 20.0% |
| !! | GTATTATTACTATATCTGTT+GGG | - | chr1_2:24633738-24633757 | Msa0063880:intron | 20.0% |
| !! | TAAATGATAGCAAATAAGTT+GGG | + | chr1_2:24633994-24634013 | None:intergenic | 20.0% |
| !! | TTAAATGATAGCAAATAAGT+TGG | + | chr1_2:24633995-24634014 | None:intergenic | 20.0% |
| !! | ACCTTATAATATCATTCATT+TGG | - | chr1_2:24634014-24634033 | Msa0063880:CDS | 20.0% |
| !! | TCCAAATGAATGATATTATA+AGG | + | chr1_2:24634018-24634037 | None:intergenic | 20.0% |
| !!! | CTGTTGTATTTGTTATTTTT+TGG | - | chr1_2:24634250-24634269 | Msa0063880:intron | 20.0% |
| !! | TTGATAAAGCATAAACTATA+AGG | + | chr1_2:24634561-24634580 | None:intergenic | 20.0% |
| !! | TATAGTTTATGCTTTATCAA+TGG | - | chr1_2:24634561-24634580 | Msa0063880:intron | 20.0% |
| !! | ATAGTTTATGCTTTATCAAT+GGG | - | chr1_2:24634562-24634581 | Msa0063880:intron | 20.0% |
| !!! | ATGATCAGACATATTTTAAA+AGG | + | chr1_2:24635230-24635249 | None:intergenic | 20.0% |
| !! | TTAGTAAACATAAGAAATCA+TGG | + | chr1_2:24635316-24635335 | None:intergenic | 20.0% |
| !!! | GGAACTTTTATTAATGAAAA+AGG | - | chr1_2:24635405-24635424 | Msa0063880:CDS | 20.0% |
| !! | TTAAAACAACTTGTGAAAAT+GGG | + | chr1_2:24635795-24635814 | None:intergenic | 20.0% |
| !! | ATTAAAACAACTTGTGAAAA+TGG | + | chr1_2:24635796-24635815 | None:intergenic | 20.0% |
| !!! | CAGAATACTTTAGATTTTTT+AGG | - | chr1_2:24635966-24635985 | Msa0063880:intron | 20.0% |
| !!! | GAATTTTATATGAATGATTG+TGG | - | chr1_2:24636014-24636033 | Msa0063880:CDS | 20.0% |
| !! | TTTGAGTAGAAAAGTTTAAT+AGG | - | chr1_2:24636056-24636075 | Msa0063880:CDS | 20.0% |
| !! | TTCTGAATAAGAATAATTCA+AGG | + | chr1_2:24636196-24636215 | None:intergenic | 20.0% |
| !! | AATAAGTAAATTGAAATCCT+TGG | - | chr1_2:24636235-24636254 | Msa0063880:CDS | 20.0% |
| !!! | TGGATTTATGGTTTTTATAA+AGG | - | chr1_2:24636362-24636381 | Msa0063880:CDS | 20.0% |
| !!! | TTTATGGTTTTTATAAAGGT+TGG | - | chr1_2:24636366-24636385 | Msa0063880:CDS | 20.0% |
| !!! | TTGATTTTGTTCCATTAATA+TGG | + | chr1_2:24636511-24636530 | None:intergenic | 20.0% |
| !! | AAGCAACAAAAAATAGATAA+AGG | + | chr1_2:24636805-24636824 | None:intergenic | 20.0% |
| !!! | TCTATTTTTTGTTGCTTTTT+TGG | - | chr1_2:24636808-24636827 | Msa0063880:CDS | 20.0% |
| !! | TTGACTATGCAAAAAAAAAT+AGG | - | chr1_2:24637017-24637036 | Msa0063880:CDS | 20.0% |
| !! | AAAATACTTTGAACGTTTTC+CGG | + | chr1_2:24631418-24631437 | None:intergenic | 25.0% |
| !! | GTTTTCAATTTGATGAATTC+TGG | - | chr1_2:24631622-24631641 | Msa0063880:intron | 25.0% |
| ! | CTTAATGATTCTAAGTTTGT+GGG | - | chr1_2:24631700-24631719 | Msa0063880:intron | 25.0% |
| ! | TTAATGATTCTAAGTTTGTG+GGG | - | chr1_2:24631701-24631720 | Msa0063880:intron | 25.0% |
| !!! | TTTTCTATCGTTTTTGGATT+TGG | - | chr1_2:24632314-24632333 | Msa0063880:intron | 25.0% |
| ! | TCAATTAAAATGTCCAAACA+TGG | + | chr1_2:24632531-24632550 | None:intergenic | 25.0% |
| ! | TTAGGAAGTTGTACAATTAA+AGG | + | chr1_2:24632599-24632618 | None:intergenic | 25.0% |
| ! | GGAGTAATAACAATCAATTT+AGG | + | chr1_2:24632617-24632636 | None:intergenic | 25.0% |
| ! | GTAAAGCCATTATAAATACA+AGG | - | chr1_2:24632691-24632710 | Msa0063880:intron | 25.0% |
| ! | AGTCACATTGATAAAATTCA+CGG | + | chr1_2:24633445-24633464 | None:intergenic | 25.0% |
| !! | ATAAATTTTATAGCAGGGAA+GGG | + | chr1_2:24633583-24633602 | None:intergenic | 25.0% |
| !! | AATAAATTTTATAGCAGGGA+AGG | + | chr1_2:24633584-24633603 | None:intergenic | 25.0% |
| ! | TTCCCTGCTATAAAATTTAT+TGG | - | chr1_2:24633583-24633602 | Msa0063880:intron | 25.0% |
| !!! | AACCATAATTTTTTATGGTC+TGG | - | chr1_2:24633665-24633684 | Msa0063880:intron | 25.0% |
| ! | AATACAACAGAAAGATCATA+AGG | + | chr1_2:24634240-24634259 | None:intergenic | 25.0% |
| ! | CGAACATATAAGAAAAGAAA+TGG | - | chr1_2:24634394-24634413 | Msa0063880:intron | 25.0% |
| ! | ATATAAGAAAAGAAATGGTG+AGG | - | chr1_2:24634399-24634418 | Msa0063880:intron | 25.0% |
| ! | TTTATCAATGGGAAATAGTT+TGG | - | chr1_2:24634573-24634592 | Msa0063880:intron | 25.0% |
| ! | AGTAACAGAAGAATAGAAAA+TGG | + | chr1_2:24634837-24634856 | None:intergenic | 25.0% |
| !! | ATTTTCTATTCTTCTGTTAC+TGG | - | chr1_2:24634836-24634855 | Msa0063880:intron | 25.0% |
| !!! | TAGCAACACTTTATTTTACT+TGG | - | chr1_2:24634978-24634997 | Msa0063880:CDS | 25.0% |
| !!! | AACACTTTATTTTACTTGGA+GGG | - | chr1_2:24634982-24635001 | Msa0063880:CDS | 25.0% |
| ! | CATTTATCAATCAATATCTG+TGG | - | chr1_2:24635050-24635069 | Msa0063880:CDS | 25.0% |
| !! | ATATTTGAAGCTGTTCTTAA+AGG | - | chr1_2:24635612-24635631 | Msa0063880:intron | 25.0% |
| !! | TATTTGAAGCTGTTCTTAAA+GGG | - | chr1_2:24635613-24635632 | Msa0063880:intron | 25.0% |
| ! | AACTAAAGAAGAAACATTTC+AGG | + | chr1_2:24635679-24635698 | None:intergenic | 25.0% |
| !! | ATTCTTATTCAGAAAGCATA+TGG | - | chr1_2:24636202-24636221 | Msa0063880:CDS | 25.0% |
| ! | ACTGTAAATGAAACAAACAA+AGG | + | chr1_2:24636310-24636329 | None:intergenic | 25.0% |
| !! | TCTATTTAGCAATGGATTTA+TGG | - | chr1_2:24636350-24636369 | Msa0063880:CDS | 25.0% |
| ! | AATGGAACAAAATCAAAATC+AGG | - | chr1_2:24636515-24636534 | Msa0063880:CDS | 25.0% |
| !! | TCTAAAGTACTACAAATGAT+GGG | + | chr1_2:24637191-24637210 | None:intergenic | 25.0% |
| !!! | TTCTAAAGTACTACAAATGA+TGG | + | chr1_2:24637192-24637211 | None:intergenic | 25.0% |
| !!! | AATCGATTCGGATTTTAGAT+TGG | + | chr1_2:24631246-24631265 | None:intergenic | 30.0% |
| ATGATGTTGTTAGGGATAAT+CGG | + | chr1_2:24631282-24631301 | None:intergenic | 30.0% | |
| ! | TGATGATGATGATGTTGTTA+GGG | + | chr1_2:24631290-24631309 | None:intergenic | 30.0% |
| ! | ATGATGATGATGATGTTGTT+AGG | + | chr1_2:24631291-24631310 | None:intergenic | 30.0% |
| TCTTGTAAGGTTAGGAAATT+GGG | + | chr1_2:24631337-24631356 | None:intergenic | 30.0% | |
| TTCTTGTAAGGTTAGGAAAT+TGG | + | chr1_2:24631338-24631357 | None:intergenic | 30.0% | |
| ! | TTTTGGATCATCAATTGACA+GGG | - | chr1_2:24631536-24631555 | Msa0063880:intron | 30.0% |
| AATTTGATGAATTCTGGTGA+TGG | - | chr1_2:24631628-24631647 | Msa0063880:intron | 30.0% | |
| GCTTAATGATTCTAAGTTTG+TGG | - | chr1_2:24631699-24631718 | Msa0063880:intron | 30.0% | |
| !!! | TCTTTTAAGTTGTATTCCAG+TGG | - | chr1_2:24632045-24632064 | Msa0063880:intron | 30.0% |
| !!! | CTTTTAAGTTGTATTCCAGT+GGG | - | chr1_2:24632046-24632065 | Msa0063880:intron | 30.0% |
| !!! | TTTTAAGTTGTATTCCAGTG+GGG | - | chr1_2:24632047-24632066 | Msa0063880:intron | 30.0% |
| !! | TTTGATTTTCGCTTGGATTA+AGG | - | chr1_2:24632224-24632243 | Msa0063880:intron | 30.0% |
| !! | AAAATTACCTTTGGAACCTT+GGG | + | chr1_2:24632411-24632430 | None:intergenic | 30.0% |
| !! | TAAAATTACCTTTGGAACCT+TGG | + | chr1_2:24632412-24632431 | None:intergenic | 30.0% |
| AAGCAATTAGAAACCATGTT+TGG | - | chr1_2:24632515-24632534 | Msa0063880:intron | 30.0% | |
| CACACACCTTGTATTTATAA+TGG | + | chr1_2:24632700-24632719 | None:intergenic | 30.0% | |
| AAATGTCATAGATCAGTACA+AGG | + | chr1_2:24632853-24632872 | None:intergenic | 30.0% | |
| !! | GATATTTTTATCCGGAGAAA+AGG | + | chr1_2:24633151-24633170 | None:intergenic | 30.0% |
| TTCTCCGGATAAAAATATCT+AGG | - | chr1_2:24633152-24633171 | Msa0063880:intron | 30.0% | |
| ! | TGTAATCAACTTGTTTGACA+GGG | - | chr1_2:24633284-24633303 | Msa0063880:intron | 30.0% |
| !! | TAAAAGGTACCAAATAGCTA+AGG | - | chr1_2:24633385-24633404 | Msa0063880:intron | 30.0% |
| ! | AAAAATGGCTTCAGATTTTG+AGG | - | chr1_2:24633487-24633506 | Msa0063880:intron | 30.0% |
| AGCCAGACCATAAAAAATTA+TGG | + | chr1_2:24633670-24633689 | None:intergenic | 30.0% | |
| AATCATAGAAAGTTACTCGA+TGG | - | chr1_2:24634290-24634309 | Msa0063880:intron | 30.0% | |
| ! | CATATAGTCCTAAACTTTTC+AGG | + | chr1_2:24634341-24634360 | None:intergenic | 30.0% |
| ! | AATGGGAAATAGTTTGGTTT+AGG | - | chr1_2:24634579-24634598 | Msa0063880:intron | 30.0% |
| ! | ATGGGAAATAGTTTGGTTTA+GGG | - | chr1_2:24634580-24634599 | Msa0063880:intron | 30.0% |
| TGTTTACCAAAAGAATGCAA+AGG | + | chr1_2:24634625-24634644 | None:intergenic | 30.0% | |
| CACTGTTGCATGATTTATTA+AGG | - | chr1_2:24634643-24634662 | Msa0063880:intron | 30.0% | |
| CTTCATTTATGAGCAATATC+TGG | - | chr1_2:24634724-24634743 | Msa0063880:intron | 30.0% | |
| AACTCAATGGTTTCAAATGT+TGG | - | chr1_2:24634861-24634880 | Msa0063880:intron | 30.0% | |
| !!! | CAACACTTTATTTTACTTGG+AGG | - | chr1_2:24634981-24635000 | Msa0063880:CDS | 30.0% |
| TGATAAATGTAAGTTACCCT+CGG | + | chr1_2:24635039-24635058 | None:intergenic | 30.0% | |
| ! | ATTATACTTGCATAGCTCTA+GGG | + | chr1_2:24635164-24635183 | None:intergenic | 30.0% |
| ATAATGCAGTAGATTGTCTT+AGG | - | chr1_2:24635179-24635198 | Msa0063880:intron | 30.0% | |
| TATGTCTGATCATAGTTCTT+TGG | - | chr1_2:24635237-24635256 | Msa0063880:intron | 30.0% | |
| GTCTACGTAGTAATGTTAAA+GGG | + | chr1_2:24635434-24635453 | None:intergenic | 30.0% | |
| AGTCTACGTAGTAATGTTAA+AGG | + | chr1_2:24635435-24635454 | None:intergenic | 30.0% | |
| !! | GGGCTTTAAATAAAATTTCC+AGG | + | chr1_2:24635515-24635534 | None:intergenic | 30.0% |
| !! | GGAAATTTTATTTAAAGCCC+TGG | - | chr1_2:24635515-24635534 | Msa0063880:intron | 30.0% |
| ! | ATTTGAAGCTGTTCTTAAAG+GGG | - | chr1_2:24635614-24635633 | Msa0063880:intron | 30.0% |
| AAAGAAGAAACATTTCAGGA+TGG | + | chr1_2:24635675-24635694 | None:intergenic | 30.0% | |
| !!! | TTTAGTTCCCTCTTTTTTTG+AGG | - | chr1_2:24635692-24635711 | Msa0063880:intron | 30.0% |
| TTATGTCAGCTTAGATATAG+TGG | - | chr1_2:24635726-24635745 | Msa0063880:intron | 30.0% | |
| CTAAACACAAGATGTAATGA+AGG | - | chr1_2:24635826-24635845 | Msa0063880:intron | 30.0% | |
| ! | AAGGATTAACAGTTCTTTTC+TGG | - | chr1_2:24635845-24635864 | Msa0063880:intron | 30.0% |
| ! | AGGATTAACAGTTCTTTTCT+GGG | - | chr1_2:24635846-24635865 | Msa0063880:intron | 30.0% |
| ! | TCTTTTCTGGGTTAAACAAA+TGG | - | chr1_2:24635858-24635877 | Msa0063880:intron | 30.0% |
| GAGTAGAAAAGTTTAATAGG+AGG | - | chr1_2:24636059-24636078 | Msa0063880:CDS | 30.0% | |
| !! | CGCTAACTTTTTCTACAAAT+TGG | + | chr1_2:24636106-24636125 | None:intergenic | 30.0% |
| TTGGAATAGTAGATTGAGAT+TGG | - | chr1_2:24636144-24636163 | Msa0063880:CDS | 30.0% | |
| TAATACACTCTTAAGAACCA+AGG | + | chr1_2:24636255-24636274 | None:intergenic | 30.0% | |
| GACGATATGATAACTTGATA+GGG | - | chr1_2:24636406-24636425 | Msa0063880:CDS | 30.0% | |
| !! | GAGAGTATTTGCCATATTAA+TGG | - | chr1_2:24636497-24636516 | Msa0063880:CDS | 30.0% |
| !!! | TTTTTGTTGCTTTTTTGGTG+TGG | - | chr1_2:24636813-24636832 | Msa0063880:CDS | 30.0% |
| !! | ACTGTTTCCTTTTGTTTAGA+TGG | - | chr1_2:24636859-24636878 | Msa0063880:CDS | 30.0% |
| CAAAAAAAAATAGGATCCCT+TGG | - | chr1_2:24637026-24637045 | Msa0063880:CDS | 30.0% | |
| ACAAGAAATAAAAGAAGGCA+CGG | - | chr1_2:24637066-24637085 | Msa0063880:CDS | 30.0% | |
| CTTGTAAGGTTAGGAAATTG+GGG | + | chr1_2:24631336-24631355 | None:intergenic | 35.0% | |
| ! | TACGAACACTATGTGTTACT+GGG | - | chr1_2:24631502-24631521 | Msa0063880:CDS | 35.0% |
| !! | GTTTTGGATCATCAATTGAC+AGG | - | chr1_2:24631535-24631554 | Msa0063880:intron | 35.0% |
| ATCAATTGACAGGGTTGTTA+GGG | - | chr1_2:24631545-24631564 | Msa0063880:intron | 35.0% | |
| !! | CAACTTCCTCTTTAGAACTA+TGG | + | chr1_2:24631654-24631673 | None:intergenic | 35.0% |
| !! | CATAGTTCTAAAGAGGAAGT+TGG | - | chr1_2:24631652-24631671 | Msa0063880:intron | 35.0% |
| !! | GATCCAAGTTGAGTTGAATT+CGG | - | chr1_2:24631804-24631823 | Msa0063880:intron | 35.0% |
| !! | GCAATGTCGTTAAAGGTATT+GGG | - | chr1_2:24631889-24631908 | Msa0063880:CDS | 35.0% |
| ! | TCTCTTCGATGTCTTTAAGA+AGG | - | chr1_2:24631981-24632000 | Msa0063880:CDS | 35.0% |
| TTAACCAAACTAGCATCAGT+TGG | + | chr1_2:24632012-24632031 | None:intergenic | 35.0% | |
| AAATTTATCATACACCCCAC+TGG | + | chr1_2:24632064-24632083 | None:intergenic | 35.0% | |
| ! | TTTTCCACACAAGCGAAAAA+AGG | + | chr1_2:24632104-24632123 | None:intergenic | 35.0% |
| CTTCTTCGTTTCATTCAACT+CGG | + | chr1_2:24632172-24632191 | None:intergenic | 35.0% | |
| AGTTGAATGAAACGAAGAAG+AGG | - | chr1_2:24632172-24632191 | Msa0063880:intron | 35.0% | |
| !! | GAACTAGTTTGATTTTCGCT+TGG | - | chr1_2:24632217-24632236 | Msa0063880:intron | 35.0% |
| ! | TTTTCGCTTGGATTAAGGAA+AGG | - | chr1_2:24632229-24632248 | Msa0063880:intron | 35.0% |
| ATTCGCAGATATTGAAGACT+TGG | - | chr1_2:24632283-24632302 | Msa0063880:intron | 35.0% | |
| TTCGCAGATATTGAAGACTT+GGG | - | chr1_2:24632284-24632303 | Msa0063880:intron | 35.0% | |
| !! | GGCTGATTTTCTATCGTTTT+TGG | - | chr1_2:24632308-24632327 | Msa0063880:intron | 35.0% |
| ACTGAAAGTAAAAGATCTCG+TGG | - | chr1_2:24632362-24632381 | Msa0063880:intron | 35.0% | |
| ! | CTGATTAACCGAGTTACTTT+AGG | - | chr1_2:24632439-24632458 | Msa0063880:intron | 35.0% |
| TAGAACTATAACATGCCCAA+GGG | + | chr1_2:24632474-24632493 | None:intergenic | 35.0% | |
| ATAGAACTATAACATGCCCA+AGG | + | chr1_2:24632475-24632494 | None:intergenic | 35.0% | |
| ! | TATTTAGTAAGCACTAGCCT+AGG | + | chr1_2:24632655-24632674 | None:intergenic | 35.0% |
| ! | AAAGAAGTTTTTGACAGGCA+TGG | - | chr1_2:24632962-24632981 | Msa0063880:CDS | 35.0% |
| GAAACTCTCATGGGAAAATA+TGG | - | chr1_2:24633022-24633041 | Msa0063880:CDS | 35.0% | |
| ! | GATTTTTGATCTTGCTGATC+AGG | - | chr1_2:24633060-24633079 | Msa0063880:intron | 35.0% |
| !! | CTGTCAAACAAGTTGATTAC+AGG | + | chr1_2:24633285-24633304 | None:intergenic | 35.0% |
| ! | CTGTAATCAACTTGTTTGAC+AGG | - | chr1_2:24633283-24633302 | Msa0063880:intron | 35.0% |
| TTCTGTAGACCTTAGCTATT+TGG | + | chr1_2:24633397-24633416 | None:intergenic | 35.0% | |
| AAATAGCTAAGGTCTACAGA+AGG | - | chr1_2:24633396-24633415 | Msa0063880:intron | 35.0% | |
| AATAGCTAAGGTCTACAGAA+GGG | - | chr1_2:24633397-24633416 | Msa0063880:intron | 35.0% | |
| CAATGTGACTTTGATATTGC+TGG | - | chr1_2:24633455-24633474 | Msa0063880:intron | 35.0% | |
| TGGTCTGGCTATACATAATT+TGG | - | chr1_2:24633680-24633699 | Msa0063880:intron | 35.0% | |
| ! | GCTATACATAATTTGGTGAG+CGG | - | chr1_2:24633687-24633706 | Msa0063880:intron | 35.0% |
| TAAACTACAACACATGCATC+AGG | + | chr1_2:24633885-24633904 | None:intergenic | 35.0% | |
| ATCATTCATTTGGATGTGTC+TGG | - | chr1_2:24634024-24634043 | Msa0063880:CDS | 35.0% | |
| ATCATTCGTCTGAATGTGTT+TGG | - | chr1_2:24634140-24634159 | Msa0063880:intron | 35.0% | |
| ACAAAATTTAACCACCAGGT+TGG | + | chr1_2:24634179-24634198 | None:intergenic | 35.0% | |
| GAGTACAAAATTTAACCACC+AGG | + | chr1_2:24634183-24634202 | None:intergenic | 35.0% | |
| !! | ATAGTCCTAAACTTTTCAGG+AGG | + | chr1_2:24634338-24634357 | None:intergenic | 35.0% |
| CTTTCAAAATGTGCAACACA+AGG | + | chr1_2:24634514-24634533 | None:intergenic | 35.0% | |
| ! | GAAATAGTTTGGTTTAGGGA+TGG | - | chr1_2:24634584-24634603 | Msa0063880:intron | 35.0% |
| ! | TTTGCACCTTTGCATTCTTT+TGG | - | chr1_2:24634616-24634635 | Msa0063880:intron | 35.0% |
| TCTGTTACTGGTAAACTCAA+TGG | - | chr1_2:24634848-24634867 | Msa0063880:intron | 35.0% | |
| CAGACACTATTTGTTCAACT+CGG | + | chr1_2:24635077-24635096 | None:intergenic | 35.0% | |
| CATTATACTTGCATAGCTCT+AGG | + | chr1_2:24635165-24635184 | None:intergenic | 35.0% | |
| CTACGTAGACTTAAACAAGA+AGG | - | chr1_2:24635444-24635463 | Msa0063880:CDS | 35.0% | |
| AGTGCTTTCTTAGAAAATGC+TGG | - | chr1_2:24635468-24635487 | Msa0063880:CDS | 35.0% | |
| TGAATCAAAACGCCTTGATA+AGG | - | chr1_2:24635539-24635558 | Msa0063880:intron | 35.0% | |
| AGTCAAAAACCACCTTATCA+AGG | + | chr1_2:24635554-24635573 | None:intergenic | 35.0% | |
| AGTATAATAATCAAGACCCC+TGG | + | chr1_2:24635586-24635605 | None:intergenic | 35.0% | |
| AGGGGTCTTGATTATTATAC+TGG | - | chr1_2:24635585-24635604 | Msa0063880:intron | 35.0% | |
| ! | TTTGAAGCTGTTCTTAAAGG+GGG | - | chr1_2:24635615-24635634 | Msa0063880:intron | 35.0% |
| TTGTGCTCCTCAAAAAAAGA+GGG | + | chr1_2:24635702-24635721 | None:intergenic | 35.0% | |
| ATTGTGCTCCTCAAAAAAAG+AGG | + | chr1_2:24635703-24635722 | None:intergenic | 35.0% | |
| TTCTGGGTTAAACAAATGGA+AGG | - | chr1_2:24635862-24635881 | Msa0063880:intron | 35.0% | |
| AATGGAAGGTTCAAAAGAGA+TGG | - | chr1_2:24635876-24635895 | Msa0063880:intron | 35.0% | |
| TAGGTAGAGAAGTTAACTTC+AGG | - | chr1_2:24635985-24636004 | Msa0063880:intron | 35.0% | |
| AGGTAGAGAAGTTAACTTCA+GGG | - | chr1_2:24635986-24636005 | Msa0063880:intron | 35.0% | |
| CTTCTGCTTCTATTTAGCAA+TGG | - | chr1_2:24636342-24636361 | Msa0063880:CDS | 35.0% | |
| GGACGATATGATAACTTGAT+AGG | - | chr1_2:24636405-24636424 | Msa0063880:CDS | 35.0% | |
| GATAACTTGATAGGGATGTT+TGG | - | chr1_2:24636414-24636433 | Msa0063880:CDS | 35.0% | |
| !! | ATGTTTGGTGTAAAGAAGGA+TGG | - | chr1_2:24636429-24636448 | Msa0063880:CDS | 35.0% |
| TCATAAGAAACTGTAGGTGT+AGG | + | chr1_2:24636715-24636734 | None:intergenic | 35.0% | |
| CACACATCATAAGAAACTGT+AGG | + | chr1_2:24636721-24636740 | None:intergenic | 35.0% | |
| CTACAGTTTCTTATGATGTG+TGG | - | chr1_2:24636719-24636738 | Msa0063880:CDS | 35.0% | |
| ACTTGATTTCACCACTTCTA+GGG | - | chr1_2:24636748-24636767 | Msa0063880:CDS | 35.0% | |
| AAGTGCTAGTGAGCATATTA+GGG | - | chr1_2:24636900-24636919 | Msa0063880:CDS | 35.0% | |
| ATCCCTTGGATAATAGTTGT+TGG | - | chr1_2:24637040-24637059 | Msa0063880:CDS | 35.0% | |
| GGCGAACAAGAAATAAAAGA+AGG | - | chr1_2:24637061-24637080 | Msa0063880:CDS | 35.0% | |
| ! | CCTCGACAAAATTTTCTCTA+GGG | + | chr1_2:24637138-24637157 | None:intergenic | 35.0% |
| ! | TCCTCGACAAAATTTTCTCT+AGG | + | chr1_2:24637139-24637158 | None:intergenic | 35.0% |
| ! | TTTTAGATTGGCGGTGGAAA+TGG | + | chr1_2:24631234-24631253 | None:intergenic | 40.0% |
| !! | CGATTCGGATTTTAGATTGG+CGG | + | chr1_2:24631243-24631262 | None:intergenic | 40.0% |
| TAAGGTTAGGAAATTGGGGA+TGG | + | chr1_2:24631332-24631351 | None:intergenic | 40.0% | |
| ! | CTCTGGTTTCTTGTAAGGTT+AGG | + | chr1_2:24631345-24631364 | None:intergenic | 40.0% |
| GTTGAGAAGAACGGTTAAGA+AGG | + | chr1_2:24631368-24631387 | None:intergenic | 40.0% | |
| !! | GAGGAGTTTGTTGAGAAGAA+CGG | + | chr1_2:24631377-24631396 | None:intergenic | 40.0% |
| ! | TACTTTGAACGTTTTCCGGT+GGG | + | chr1_2:24631414-24631433 | None:intergenic | 40.0% |
| ! | ATACTTTGAACGTTTTCCGG+TGG | + | chr1_2:24631415-24631434 | None:intergenic | 40.0% |
| GATCGAAACGATTTCGATGT+TGG | - | chr1_2:24631454-24631473 | Msa0063880:CDS | 40.0% | |
| CACATAGTGTTCGTAGTGAT+CGG | + | chr1_2:24631497-24631516 | None:intergenic | 40.0% | |
| CTACGAACACTATGTGTTAC+TGG | - | chr1_2:24631501-24631520 | Msa0063880:CDS | 40.0% | |
| ! | TGTGTTACTGGGTGTTTCTT+CGG | - | chr1_2:24631513-24631532 | Msa0063880:CDS | 40.0% |
| CATCAATTGACAGGGTTGTT+AGG | - | chr1_2:24631544-24631563 | Msa0063880:intron | 40.0% | |
| CGCCTCATAAGAAAAAGTCA+CGG | + | chr1_2:24631584-24631603 | None:intergenic | 40.0% | |
| !! | TGATGGCCATAGTTCTAAAG+AGG | - | chr1_2:24631645-24631664 | Msa0063880:intron | 40.0% |
| ATGATTCTAAGTTTGTGGGG+AGG | - | chr1_2:24631704-24631723 | Msa0063880:intron | 40.0% | |
| TGATTCTAAGTTTGTGGGGA+GGG | - | chr1_2:24631705-24631724 | Msa0063880:intron | 40.0% | |
| TGTGACATTGTTACAGCTCA+TGG | - | chr1_2:24631745-24631764 | Msa0063880:intron | 40.0% | |
| GTGACATTGTTACAGCTCAT+GGG | - | chr1_2:24631746-24631765 | Msa0063880:intron | 40.0% | |
| TTACAGCTCATGGGATGATT+AGG | - | chr1_2:24631755-24631774 | Msa0063880:intron | 40.0% | |
| TACAGCTCATGGGATGATTA+GGG | - | chr1_2:24631756-24631775 | Msa0063880:intron | 40.0% | |
| ATGCCAAATCATTGCATTCG+AGG | - | chr1_2:24631782-24631801 | Msa0063880:intron | 40.0% | |
| GATCCTCGAATGCAATGATT+TGG | + | chr1_2:24631788-24631807 | None:intergenic | 40.0% | |
| GATCCGAATTCAACTCAACT+TGG | + | chr1_2:24631810-24631829 | None:intergenic | 40.0% | |
| GACAACAACACACAACACAT+AGG | + | chr1_2:24631865-24631884 | None:intergenic | 40.0% | |
| ! | GTGTTGTGTGTTGTTGTCTT+TGG | - | chr1_2:24631867-24631886 | Msa0063880:intron | 40.0% |
| GTCTTTGGCAATGTCGTTAA+AGG | - | chr1_2:24631882-24631901 | Msa0063880:intron | 40.0% | |
| ! | GGCAATGTCGTTAAAGGTAT+TGG | - | chr1_2:24631888-24631907 | Msa0063880:intron | 40.0% |
| !! | TCGTTAAAGGTATTGGGTCA+GGG | - | chr1_2:24631895-24631914 | Msa0063880:CDS | 40.0% |
| TCGTCGCCATGATTTCTATT+CGG | - | chr1_2:24631957-24631976 | Msa0063880:CDS | 40.0% | |
| AGAGACCCGAATAGAAATCA+TGG | + | chr1_2:24631966-24631985 | None:intergenic | 40.0% | |
| ATGTCCAACTGATGCTAGTT+TGG | - | chr1_2:24632005-24632024 | Msa0063880:CDS | 40.0% | |
| !!! | ATGTCCTTTTTTCGCTTGTG+TGG | - | chr1_2:24632097-24632116 | Msa0063880:intron | 40.0% |
| TTCGCTTGTGTGGAAAATTG+TGG | - | chr1_2:24632107-24632126 | Msa0063880:intron | 40.0% | |
| TGAAACGAAGAAGAGGAAGA+AGG | - | chr1_2:24632179-24632198 | Msa0063880:intron | 40.0% | |
| CAAGACAGCCTAAAGTAACT+CGG | + | chr1_2:24632450-24632469 | None:intergenic | 40.0% | |
| CCTAGGAAGTTGAATACTCT+AGG | + | chr1_2:24632638-24632657 | None:intergenic | 40.0% | |
| ! | CCTAGAGTATTCAACTTCCT+AGG | - | chr1_2:24632635-24632654 | Msa0063880:intron | 40.0% |
| ! | CAATGCATTTGAGCACTGTT+AGG | - | chr1_2:24632768-24632787 | Msa0063880:intron | 40.0% |
| GGGACACATGATTATGCTAA+TGG | - | chr1_2:24632902-24632921 | Msa0063880:CDS | 40.0% | |
| TTCAAAGACAGGTGTATCCA+AGG | + | chr1_2:24632996-24633015 | None:intergenic | 40.0% | |
| GTTTCTCGCAATTCAAAGAC+AGG | + | chr1_2:24633007-24633026 | None:intergenic | 40.0% | |
| TGAATTGCGAGAAACTCTCA+TGG | - | chr1_2:24633012-24633031 | Msa0063880:CDS | 40.0% | |
| GAATTGCGAGAAACTCTCAT+GGG | - | chr1_2:24633013-24633032 | Msa0063880:CDS | 40.0% | |
| CAACTTGTCAAGAAGTGAAC+AGG | + | chr1_2:24633106-24633125 | None:intergenic | 40.0% | |
| ! | TGACAGCTTTTCCTTTTCTC+CGG | - | chr1_2:24633137-24633156 | Msa0063880:intron | 40.0% |
| ! | AATCAACTTGTTTGACAGGG+CGG | - | chr1_2:24633287-24633306 | Msa0063880:intron | 40.0% |
| GTAGCTACAAACCTAGCAAA+CGG | + | chr1_2:24633347-24633366 | None:intergenic | 40.0% | |
| !!! | TCTGAAGCCATTTTTTCAGC+TGG | + | chr1_2:24633482-24633501 | None:intergenic | 40.0% |
| ATTACTATATCTGTTGGGCG+TGG | - | chr1_2:24633743-24633762 | Msa0063880:intron | 40.0% | |
| TTACTATATCTGTTGGGCGT+GGG | - | chr1_2:24633744-24633763 | Msa0063880:intron | 40.0% | |
| CAAAGATCACATCAGCAAGA+AGG | + | chr1_2:24633948-24633967 | None:intergenic | 40.0% | |
| ! | GTCTGGTGATTGAGTTTTAC+AGG | - | chr1_2:24634041-24634060 | Msa0063880:CDS | 40.0% |
| GATGGCATGATGCAAATATG+TGG | - | chr1_2:24634308-24634327 | Msa0063880:intron | 40.0% | |
| GAGTACCTCCTGAAAAGTTT+AGG | - | chr1_2:24634330-24634349 | Msa0063880:intron | 40.0% | |
| AAAAGAAATGGTGAGGACTG+AGG | - | chr1_2:24634406-24634425 | Msa0063880:intron | 40.0% | |
| CAGTTTAAGCACAACAGAAG+TGG | + | chr1_2:24634489-24634508 | None:intergenic | 40.0% | |
| CAGTGAGTAACTAGTGACAA+AGG | + | chr1_2:24634678-24634697 | None:intergenic | 40.0% | |
| TGGACTCGACTAGATGAAAA+AGG | - | chr1_2:24634881-24634900 | Msa0063880:CDS | 40.0% | |
| ! | TGCTCTGAACTGCTAATATC+AGG | - | chr1_2:24635272-24635291 | Msa0063880:intron | 40.0% |
| TGTTGATGCATTGAATGACC+TGG | - | chr1_2:24635494-24635513 | Msa0063880:CDS | 40.0% | |
| !!! | AAGGCGTTTTGATTCATCCA+GGG | + | chr1_2:24635535-24635554 | None:intergenic | 40.0% |
| ATCAAAACGCCTTGATAAGG+TGG | - | chr1_2:24635542-24635561 | Msa0063880:intron | 40.0% | |
| !!! | TTTTTGACTTGAGTCTTGCC+AGG | - | chr1_2:24635565-24635584 | Msa0063880:intron | 40.0% |
| !!! | TTTTGACTTGAGTCTTGCCA+GGG | - | chr1_2:24635566-24635585 | Msa0063880:intron | 40.0% |
| GGTAGAGAAGTTAACTTCAG+GGG | - | chr1_2:24635987-24636006 | Msa0063880:intron | 40.0% | |
| ! | GTGGATTGAGACATTGTTGA+TGG | - | chr1_2:24636033-24636052 | Msa0063880:CDS | 40.0% |
| !! | AGGGATGTTTGGTGTAAAGA+AGG | - | chr1_2:24636425-24636444 | Msa0063880:CDS | 40.0% |
| AAAGAAGGATGGTTCCAAGA+AGG | - | chr1_2:24636440-24636459 | Msa0063880:CDS | 40.0% | |
| GACTTGATTTCACCACTTCT+AGG | - | chr1_2:24636747-24636766 | Msa0063880:CDS | 40.0% | |
| AAATAGATGTGCCCTAGAAG+TGG | + | chr1_2:24636762-24636781 | None:intergenic | 40.0% | |
| CTAGGGCACATCTATTTACT+AGG | - | chr1_2:24636765-24636784 | Msa0063880:CDS | 40.0% | |
| ! | GAAGTGCTAGTGAGCATATT+AGG | - | chr1_2:24636899-24636918 | Msa0063880:CDS | 40.0% |
| ! | TCAAAGTGCTTAGATCTTCC+AGG | + | chr1_2:24637001-24637020 | None:intergenic | 40.0% |
| CGCCAACAACTATTATCCAA+GGG | + | chr1_2:24637045-24637064 | None:intergenic | 40.0% | |
| TCGCCAACAACTATTATCCA+AGG | + | chr1_2:24637046-24637065 | None:intergenic | 40.0% | |
| ! | CCCTAGAGAAAATTTTGTCG+AGG | - | chr1_2:24637135-24637154 | Msa0063880:CDS | 40.0% |
| ! | CATTTTGCGTGTGTGAAACG+AGG | + | chr1_2:24631153-24631172 | None:intergenic | 45.0% |
| ! | TTCGGATTTTAGATTGGCGG+TGG | + | chr1_2:24631240-24631259 | None:intergenic | 45.0% |
| TGAGTGCGGATGAATCGATT+CGG | + | chr1_2:24631258-24631277 | None:intergenic | 45.0% | |
| TAGGGATAATCGGTTGAGTG+CGG | + | chr1_2:24631272-24631291 | None:intergenic | 45.0% | |
| ! | GAAGGCTCTGGTTTCTTGTA+AGG | + | chr1_2:24631350-24631369 | None:intergenic | 45.0% |
| AAGAACGGTTAAGAAGGCTC+TGG | + | chr1_2:24631362-24631381 | None:intergenic | 45.0% | |
| CTCAACAAACTCCTCCTCTT+CGG | - | chr1_2:24631382-24631401 | Msa0063880:CDS | 45.0% | |
| ! | ACTGGGTGTTTCTTCGGTTT+TGG | - | chr1_2:24631519-24631538 | Msa0063880:CDS | 45.0% |
| !! | GGCCGTGACTTTTTCTTATG+AGG | - | chr1_2:24631579-24631598 | Msa0063880:intron | 45.0% |
| GGCGTTAAAGCTCGATGTTA+CGG | - | chr1_2:24631600-24631619 | Msa0063880:intron | 45.0% | |
| !! | TTGGTGTTGCTGCTTCTATG+AGG | - | chr1_2:24631671-24631690 | Msa0063880:intron | 45.0% |
| !! | GTCGTTAAAGGTATTGGGTC+AGG | - | chr1_2:24631894-24631913 | Msa0063880:CDS | 45.0% |
| GAAATCATGGCGACGATCAA+TGG | + | chr1_2:24631953-24631972 | None:intergenic | 45.0% | |
| CGTCGCCATGATTTCTATTC+GGG | - | chr1_2:24631958-24631977 | Msa0063880:CDS | 45.0% | |
| TTGTGTGGAAAATTGTGGCG+TGG | - | chr1_2:24632112-24632131 | Msa0063880:intron | 45.0% | |
| TGTGTGGAAAATTGTGGCGT+GGG | - | chr1_2:24632113-24632132 | Msa0063880:intron | 45.0% | |
| GACTGCTTATGTTGCACTTG+AGG | - | chr1_2:24632143-24632162 | Msa0063880:intron | 45.0% | |
| !! | AAGAGGAAGAAGGCTGGTTT+GGG | - | chr1_2:24632189-24632208 | Msa0063880:intron | 45.0% |
| GCAGATATTGAAGACTTGGG+TGG | - | chr1_2:24632287-24632306 | Msa0063880:intron | 45.0% | |
| TTGGAACCTTGGGCTTTCTT+CGG | + | chr1_2:24632401-24632420 | None:intergenic | 45.0% | |
| AAGAAAGCCCAAGGTTCCAA+AGG | - | chr1_2:24632401-24632420 | Msa0063880:intron | 45.0% | |
| ! | CGAGTTACTTTAGGCTGTCT+TGG | - | chr1_2:24632448-24632467 | Msa0063880:intron | 45.0% |
| ! | ATCAACTTGTTTGACAGGGC+GGG | - | chr1_2:24633288-24633307 | Msa0063880:intron | 45.0% |
| ACTTGACAGTTCCGTTTGCT+AGG | - | chr1_2:24633333-24633352 | Msa0063880:intron | 45.0% | |
| TGCTGGTCCAGCTGAAAAAA+TGG | - | chr1_2:24633472-24633491 | Msa0063880:intron | 45.0% | |
| TTGCTTGATGAGCTGAAGCT+TGG | - | chr1_2:24633530-24633549 | Msa0063880:intron | 45.0% | |
| TGCTTGATGAGCTGAAGCTT+GGG | - | chr1_2:24633531-24633550 | Msa0063880:intron | 45.0% | |
| AAAACTCATCAACCAGCAGC+AGG | + | chr1_2:24633826-24633845 | None:intergenic | 45.0% | |
| GGGTCGGCAAGAATAGAAAA+TGG | + | chr1_2:24634774-24634793 | None:intergenic | 45.0% | |
| AATACTCGTGATCTCATCCG+AGG | - | chr1_2:24635019-24635038 | Msa0063880:CDS | 45.0% | |
| ATACTCGTGATCTCATCCGA+GGG | - | chr1_2:24635020-24635039 | Msa0063880:CDS | 45.0% | |
| TCCAATTCTGTCAGCTGTCT+CGG | + | chr1_2:24635388-24635407 | None:intergenic | 45.0% | |
| !!! | CAAGGCGTTTTGATTCATCC+AGG | + | chr1_2:24635536-24635555 | None:intergenic | 45.0% |
| !! | TTTGACTTGAGTCTTGCCAG+GGG | - | chr1_2:24635567-24635586 | Msa0063880:intron | 45.0% |
| ! | AAGGTTGGTTCAATTGCTGC+TGG | - | chr1_2:24636381-24636400 | Msa0063880:CDS | 45.0% |
| TGGTTCCAAGAAGGAAGTTC+CGG | - | chr1_2:24636449-24636468 | Msa0063880:CDS | 45.0% | |
| TCTGATGGCAGCTATGGTTT+AGG | + | chr1_2:24636684-24636703 | None:intergenic | 45.0% | |
| TATCTGTCTGATGGCAGCTA+TGG | + | chr1_2:24636690-24636709 | None:intergenic | 45.0% | |
| !! | GTGTAGGAGTATCTGTCTGA+TGG | + | chr1_2:24636699-24636718 | None:intergenic | 45.0% |
| GGTCGAGCCATCTAAACAAA+AGG | + | chr1_2:24636869-24636888 | None:intergenic | 45.0% | |
| ACTAGCACTTCTGTCTTGGT+TGG | + | chr1_2:24636890-24636909 | None:intergenic | 45.0% | |
| !! | AAAGCTGGTTGGTGAACTGT+GGG | - | chr1_2:24636943-24636962 | Msa0063880:CDS | 45.0% |
| TCGGGTGAAAGCAGAATTCT+TGG | - | chr1_2:24636970-24636989 | Msa0063880:CDS | 45.0% | |
| AGTGCTTAGATCTTCCAGGA+TGG | + | chr1_2:24636997-24637016 | None:intergenic | 45.0% | |
| ! | GCAACTGAAAAGCATGGAGA+CGG | - | chr1_2:24637090-24637109 | Msa0063880:CDS | 45.0% |
| ! | CAACTGAAAAGCATGGAGAC+GGG | - | chr1_2:24637091-24637110 | Msa0063880:CDS | 45.0% |
| TTGTCGAGGAGCTTCAGAAA+CGG | - | chr1_2:24637149-24637168 | Msa0063880:CDS | 45.0% | |
| !!! | TTTTTTTTTTTTTAAAAATC+AGG | - | chr1_2:24632880-24632899 | Msa0063880:CDS | 5.0% |
| !!! | TTTTTTTTTTTTAAAAATCA+GGG | - | chr1_2:24632881-24632900 | Msa0063880:CDS | 5.0% |
| !! | ATAATAAAATATAAGTATAA+AGG | + | chr1_2:24634455-24634474 | None:intergenic | 5.0% |
| GTGGGTAATTACCGAAGAGG+AGG | + | chr1_2:24631396-24631415 | None:intergenic | 50.0% | |
| CCTCTTCGGTAATTACCCAC+CGG | - | chr1_2:24631396-24631415 | Msa0063880:CDS | 50.0% | |
| !! | GTTGTTAGGGTTTGCTGACG+TGG | - | chr1_2:24631558-24631577 | Msa0063880:intron | 50.0% |
| ACGAAGAAGAGGAAGAAGGC+TGG | - | chr1_2:24632183-24632202 | Msa0063880:intron | 50.0% | |
| ! | GAAGAGGAAGAAGGCTGGTT+TGG | - | chr1_2:24632188-24632207 | Msa0063880:intron | 50.0% |
| !! | AGAGGAAGAAGGCTGGTTTG+GGG | - | chr1_2:24632190-24632209 | Msa0063880:intron | 50.0% |
| !! | AAGAAGGCTGGTTTGGGGAA+AGG | - | chr1_2:24632195-24632214 | Msa0063880:intron | 50.0% |
| TGAAAGCCGAAGAAAGCCCA+AGG | - | chr1_2:24632392-24632411 | Msa0063880:intron | 50.0% | |
| TTTAGGCTGTCTTGGCCCTT+GGG | - | chr1_2:24632456-24632475 | Msa0063880:intron | 50.0% | |
| ! | TCAACTTGTTTGACAGGGCG+GGG | - | chr1_2:24633289-24633308 | Msa0063880:intron | 50.0% |
| GCTTGATGAGCTGAAGCTTG+GGG | - | chr1_2:24633532-24633551 | Msa0063880:intron | 50.0% | |
| ! | GCTGAAGCTTGGGGATTTTG+AGG | - | chr1_2:24633541-24633560 | Msa0063880:intron | 50.0% |
| GTGATCGACGTATTCCAACC+TGG | - | chr1_2:24634162-24634181 | Msa0063880:intron | 50.0% | |
| ATCGACGTATTCCAACCTGG+TGG | - | chr1_2:24634165-24634184 | Msa0063880:intron | 50.0% | |
| AAGCCGTATCCCACTAAGTG+GGG | + | chr1_2:24634794-24634813 | None:intergenic | 50.0% | |
| CAAGCCGTATCCCACTAAGT+GGG | + | chr1_2:24634795-24634814 | None:intergenic | 50.0% | |
| TGTACTGCCTTCCATGCTGT+AGG | - | chr1_2:24635343-24635362 | Msa0063880:intron | 50.0% | |
| TCTTCCACCTACAGCATGGA+AGG | + | chr1_2:24635353-24635372 | None:intergenic | 50.0% | |
| TCCGAGACAGCTGACAGAAT+TGG | - | chr1_2:24635384-24635403 | Msa0063880:CDS | 50.0% | |
| !! | TGTTCTTAAAGGGGGTGCTC+AGG | - | chr1_2:24635623-24635642 | Msa0063880:intron | 50.0% |
| ! | GTTGGTTCAATTGCTGCTGG+TGG | - | chr1_2:24636384-24636403 | Msa0063880:CDS | 50.0% |
| AACAGCCGGAACTTCCTTCT+TGG | + | chr1_2:24636457-24636476 | None:intergenic | 50.0% | |
| AAGAAGGAAGTTCCGGCTGT+TGG | - | chr1_2:24636456-24636475 | Msa0063880:CDS | 50.0% | |
| GCTCACTAGCACTTCTGTCT+TGG | + | chr1_2:24636894-24636913 | None:intergenic | 50.0% | |
| TTAGGGAGTGACGTAGCTGT+AGG | - | chr1_2:24636917-24636936 | Msa0063880:CDS | 50.0% | |
| !! | CAAAGCTGGTTGGTGAACTG+TGG | - | chr1_2:24636942-24636961 | Msa0063880:CDS | 50.0% |
| TTGGTGAACTGTGGGATGCT+CGG | - | chr1_2:24636951-24636970 | Msa0063880:CDS | 50.0% | |
| GCAGAATTCTTGGTCCATCC+TGG | - | chr1_2:24636980-24636999 | Msa0063880:CDS | 50.0% | |
| CACGGTGCAACTGAAAAGCA+TGG | - | chr1_2:24637084-24637103 | Msa0063880:CDS | 50.0% | |
| ATGTCCTCCGCCGTAACACT+TGG | - | chr1_2:24631170-24631189 | Msa0063880:three_prime_UTR | 55.0% | |
| ACCCTTGCCGCCAAGTGTTA+CGG | + | chr1_2:24631183-24631202 | None:intergenic | 55.0% | |
| GGTGGAAATGGCGTAAACGG+TGG | + | chr1_2:24631222-24631241 | None:intergenic | 55.0% | |
| GGCGGTGGAAATGGCGTAAA+CGG | + | chr1_2:24631225-24631244 | None:intergenic | 55.0% | |
| CCGGTGGGTAATTACCGAAG+AGG | + | chr1_2:24631399-24631418 | None:intergenic | 55.0% | |
| CTTTAGGCTGTCTTGGCCCT+TGG | - | chr1_2:24632455-24632474 | Msa0063880:intron | 55.0% | |
| GACAGGTGTATCCAAGGCTG+TGG | + | chr1_2:24632990-24633009 | None:intergenic | 55.0% | |
| ACCAGCAGCAGGTAGTCTGA+TGG | + | chr1_2:24633815-24633834 | None:intergenic | 55.0% | |
| TTCTTGCCGACCCCACTTAG+TGG | - | chr1_2:24634781-24634800 | Msa0063880:intron | 55.0% | |
| TCTTGCCGACCCCACTTAGT+GGG | - | chr1_2:24634782-24634801 | Msa0063880:intron | 55.0% | |
| CGTATCCCACTAAGTGGGGT+CGG | + | chr1_2:24634790-24634809 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+CGG | - | chr1_2:24634788-24634807 | Msa0063880:intron | 55.0% | |
| CCAAGCCGTATCCCACTAAG+TGG | + | chr1_2:24634796-24634815 | None:intergenic | 55.0% | |
| CCACTTAGTGGGATACGGCT+TGG | - | chr1_2:24634793-24634812 | Msa0063880:intron | 55.0% | |
| ! | CTTAGTGGGATACGGCTTGG+TGG | - | chr1_2:24634796-24634815 | Msa0063880:intron | 55.0% |
| ACTGCCTTCCATGCTGTAGG+TGG | - | chr1_2:24635346-24635365 | Msa0063880:CDS | 55.0% | |
| CCTCTCTTCCACCTACAGCA+TGG | + | chr1_2:24635357-24635376 | None:intergenic | 55.0% | |
| CCATGCTGTAGGTGGAAGAG+AGG | - | chr1_2:24635354-24635373 | Msa0063880:CDS | 55.0% | |
| !! | TCCGGCTGTTGGTTTGAGTC+TGG | - | chr1_2:24636467-24636486 | Msa0063880:CDS | 55.0% |
| CCCAGACTCAAACCAACAGC+CGG | + | chr1_2:24636471-24636490 | None:intergenic | 55.0% | |
| !! | CCGGCTGTTGGTTTGAGTCT+GGG | - | chr1_2:24636468-24636487 | Msa0063880:CDS | 55.0% |
| CGTAGCTGTAGGTGCAAAGC+TGG | - | chr1_2:24636928-24636947 | Msa0063880:CDS | 55.0% | |
| GCTGTAGGTGCAAAGCTGGT+TGG | - | chr1_2:24636932-24636951 | Msa0063880:CDS | 55.0% | |
| TGGTGAACTGTGGGATGCTC+GGG | - | chr1_2:24636952-24636971 | Msa0063880:CDS | 55.0% | |
| TCCTCCGCCGTAACACTTGG+CGG | - | chr1_2:24631173-24631192 | Msa0063880:three_prime_UTR | 60.0% | |
| CTTGCCGCCAAGTGTTACGG+CGG | + | chr1_2:24631180-24631199 | None:intergenic | 60.0% | |
| GCCGTAACACTTGGCGGCAA+GGG | - | chr1_2:24631179-24631198 | Msa0063880:three_prime_UTR | 60.0% | |
| GCCATCAGACTACCTGCTGC+TGG | - | chr1_2:24633811-24633830 | Msa0063880:intron | 60.0% | |
| CGCCGTAACACTTGGCGGCA+AGG | - | chr1_2:24631178-24631197 | Msa0063880:three_prime_UTR | 65.0% | |
| GCCGCCAAGTGTTACGGCGG+AGG | + | chr1_2:24631177-24631196 | None:intergenic | 70.0% | |
| CAGGCATGGCGCCACAGCCT+TGG | - | chr1_2:24632976-24632995 | Msa0063880:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 24631133 | 24637292 | 24631133 | ID=Msa0063880;Name=Msa0063880 |
| chr1_2 | mRNA | 24631133 | 24637292 | 24631133 | ID=Msa0063880-mRNA-1;Parent=Msa0063880;Name=Msa0063880-mRNA-1;_AED=0.11;_eAED=0.12;_QI=0|0.5|0.28|1|0.83|0.85|7|106|898 |
| chr1_2 | exon | 24631133 | 24631547 | 24631133 | ID=Msa0063880-mRNA-1:exon:8839;Parent=Msa0063880-mRNA-1 |
| chr1_2 | exon | 24631889 | 24632041 | 24631889 | ID=Msa0063880-mRNA-1:exon:8838;Parent=Msa0063880-mRNA-1 |
| chr1_2 | exon | 24632781 | 24633060 | 24632781 | ID=Msa0063880-mRNA-1:exon:8837;Parent=Msa0063880-mRNA-1 |
| chr1_2 | exon | 24633918 | 24634144 | 24633918 | ID=Msa0063880-mRNA-1:exon:8836;Parent=Msa0063880-mRNA-1 |
| chr1_2 | exon | 24634863 | 24635120 | 24634863 | ID=Msa0063880-mRNA-1:exon:8835;Parent=Msa0063880-mRNA-1 |
| chr1_2 | exon | 24635344 | 24635523 | 24635344 | ID=Msa0063880-mRNA-1:exon:8834;Parent=Msa0063880-mRNA-1 |
| chr1_2 | exon | 24636003 | 24637292 | 24636003 | ID=Msa0063880-mRNA-1:exon:8833;Parent=Msa0063880-mRNA-1 |
| chr1_2 | CDS | 24636003 | 24637292 | 24636003 | ID=Msa0063880-mRNA-1:cds;Parent=Msa0063880-mRNA-1 |
| chr1_2 | CDS | 24635344 | 24635523 | 24635344 | ID=Msa0063880-mRNA-1:cds;Parent=Msa0063880-mRNA-1 |
| chr1_2 | CDS | 24634863 | 24635120 | 24634863 | ID=Msa0063880-mRNA-1:cds;Parent=Msa0063880-mRNA-1 |
| chr1_2 | CDS | 24633918 | 24634144 | 24633918 | ID=Msa0063880-mRNA-1:cds;Parent=Msa0063880-mRNA-1 |
| chr1_2 | CDS | 24632781 | 24633060 | 24632781 | ID=Msa0063880-mRNA-1:cds;Parent=Msa0063880-mRNA-1 |
| chr1_2 | CDS | 24631889 | 24632041 | 24631889 | ID=Msa0063880-mRNA-1:cds;Parent=Msa0063880-mRNA-1 |
| chr1_2 | CDS | 24631239 | 24631547 | 24631239 | ID=Msa0063880-mRNA-1:cds;Parent=Msa0063880-mRNA-1 |
| chr1_2 | three_prime_UTR | 24631133 | 24631238 | 24631133 | ID=Msa0063880-mRNA-1:three_prime_utr;Parent=Msa0063880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
