AlfalfaGEDB | Msa0757830

M. sativa cultivar zhongmu-4 / Msa0757830

KEGG: K14544
GO: -
PFAM: PF03813.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0757830	XP_003612000.1	87.206	1063	44	9	1	986	1	1048	0.0	1837

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0757830	sp\|Q8R5K4\|NOL6_MOUSE	25.249	1105	640	33	4	976	93	1143	5.75e-82	292

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0757830	G7KDK7	87.206	1063	44	9	1	986	1	1048	0.0	1837

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003720	Msa0757830	0.836074	1.157924e-56	-8.615850e-47
Msa0028420	Msa0757830	0.805256	1.457712e-49	-8.615850e-47
Msa0029270	Msa0757830	0.818522	1.875838e-52	-8.615850e-47
Msa0030200	Msa0757830	0.809276	2.049932e-50	-8.615850e-47
Msa0032090	Msa0757830	0.862236	5.847379e-64	-8.615850e-47
Msa0032430	Msa0757830	0.859627	3.629310e-63	-8.615850e-47
Msa0032580	Msa0757830	0.806127	9.565381e-50	-8.615850e-47
Msa0040690	Msa0757830	0.820313	7.328505e-53	-8.615850e-47
Msa0043660	Msa0757830	0.813865	2.061653e-51	-8.615850e-47
Msa0047030	Msa0757830	0.801320	9.520622e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0757830	MtrunA17_Chr5g0404121	87.206	1063	44	9	1	986	1	1048	0.0	1837

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0757830	AT1G63810.2	54.597	1066	382	16	2	985	8	1053	0.0	1136
Msa0757830	AT1G63810.1	54.597	1066	382	16	2	985	8	1053	0.0	1136

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Find 256 sgRNAs with CRISPR-Local

Find 626 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATTGGTTATTCAAAA+GGG	0.446923	5_2:-12794087	Msa0757830:CDS
AAAGCATCTGAGGCCTGGAC+TGG	0.476348	5_2:-12787421	Msa0757830:CDS
AAATACGGATCCGTTTGGAT+TGG	0.514368	5_2:-12785438	Msa0757830:three_prime_UTR
AAATGCATGGAGAAGTGTAG+AGG	0.649090	5_2:-12790601	Msa0757830:CDS
AAATTTCCAGAGTGTGCTAT+CGG	0.555755	5_2:+12789267	None:intergenic
AACAAGGAGCTATATGCATC+AGG	0.422250	5_2:-12790161	Msa0757830:CDS
AACACAAATACGGATCCGTT+TGG	0.437237	5_2:-12785443	Msa0757830:three_prime_UTR
AACATTCATAATTCAAAGAA+TGG	0.374061	5_2:-12792025	Msa0757830:intron
AACGGATCCGTATTTGTGTT+AGG	0.417011	5_2:+12785446	None:intergenic
AAGCGTTTGCGTCTTATTGA+AGG	0.404458	5_2:-12789219	Msa0757830:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCAGTAACATTATAGTTATC+AGG	+	chr5_2:12785750-12785769	None:intergenic	30.0%
AAACAGTCTCACAAAACTTA+AGG	-	chr5_2:12786226-12786245	Msa0757830:intron	30.0%
ATAGAATACACTTGCTCTAA+GGG	+	chr5_2:12786287-12786306	None:intergenic	30.0%
AATAGAATACACTTGCTCTA+AGG	+	chr5_2:12786288-12786307	None:intergenic	30.0%
TTAGAGCAAGTGTATTCTAT+TGG	-	chr5_2:12786287-12786306	Msa0757830:CDS	30.0%
TTGTAAATTAATGGAGAGAG+AGG	-	chr5_2:12786450-12786469	Msa0757830:intron	30.0%
ATTCAAGTAAAACTAGACAC+GGG	+	chr5_2:12786615-12786634	None:intergenic	30.0%
ACTAAATCTATTAACCCGTT+TGG	-	chr5_2:12786667-12786686	Msa0757830:intron	30.0%
AATCATAACAGTCAGATCAT+TGG	+	chr5_2:12786770-12786789	None:intergenic	30.0%
ACTGTAATTTCTGTTATGAC+AGG	-	chr5_2:12786878-12786897	Msa0757830:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	12785420	12794520	12785420	ID=Msa0757830;Name=Msa0757830
chr5_2	mRNA	12785420	12794520	12785420	ID=Msa0757830-mRNA-1;Parent=Msa0757830;Name=Msa0757830-mRNA-1;_AED=0.18;_eAED=0.18;_QI=207\|0.73\|0.83\|0.95\|1\|1\|24\|383\|986
chr5_2	exon	12785420	12785931	12785420	ID=Msa0757830-mRNA-1:exon:5775;Parent=Msa0757830-mRNA-1
chr5_2	exon	12786070	12786159	12786070	ID=Msa0757830-mRNA-1:exon:5774;Parent=Msa0757830-mRNA-1
chr5_2	exon	12786261	12786406	12786261	ID=Msa0757830-mRNA-1:exon:5773;Parent=Msa0757830-mRNA-1
chr5_2	exon	12786751	12786856	12786751	ID=Msa0757830-mRNA-1:exon:5772;Parent=Msa0757830-mRNA-1
chr5_2	exon	12786961	12787053	12786961	ID=Msa0757830-mRNA-1:exon:5771;Parent=Msa0757830-mRNA-1
chr5_2	exon	12787402	12787527	12787402	ID=Msa0757830-mRNA-1:exon:5770;Parent=Msa0757830-mRNA-1
chr5_2	exon	12787690	12787786	12787690	ID=Msa0757830-mRNA-1:exon:5769;Parent=Msa0757830-mRNA-1
chr5_2	exon	12787919	12788020	12787919	ID=Msa0757830-mRNA-1:exon:5768;Parent=Msa0757830-mRNA-1
chr5_2	exon	12788278	12788398	12788278	ID=Msa0757830-mRNA-1:exon:5767;Parent=Msa0757830-mRNA-1
chr5_2	exon	12788488	12788608	12788488	ID=Msa0757830-mRNA-1:exon:5766;Parent=Msa0757830-mRNA-1
chr5_2	exon	12788861	12788982	12788861	ID=Msa0757830-mRNA-1:exon:5765;Parent=Msa0757830-mRNA-1
chr5_2	exon	12789178	12789291	12789178	ID=Msa0757830-mRNA-1:exon:5764;Parent=Msa0757830-mRNA-1
chr5_2	exon	12789378	12789521	12789378	ID=Msa0757830-mRNA-1:exon:5763;Parent=Msa0757830-mRNA-1
chr5_2	exon	12789642	12789720	12789642	ID=Msa0757830-mRNA-1:exon:5762;Parent=Msa0757830-mRNA-1
chr5_2	exon	12789818	12789928	12789818	ID=Msa0757830-mRNA-1:exon:5761;Parent=Msa0757830-mRNA-1
chr5_2	exon	12790025	12790199	12790025	ID=Msa0757830-mRNA-1:exon:5760;Parent=Msa0757830-mRNA-1
chr5_2	exon	12790535	12790650	12790535	ID=Msa0757830-mRNA-1:exon:5759;Parent=Msa0757830-mRNA-1
chr5_2	exon	12790747	12790845	12790747	ID=Msa0757830-mRNA-1:exon:5758;Parent=Msa0757830-mRNA-1
chr5_2	exon	12791195	12791295	12791195	ID=Msa0757830-mRNA-1:exon:5757;Parent=Msa0757830-mRNA-1
chr5_2	exon	12791557	12791707	12791557	ID=Msa0757830-mRNA-1:exon:5756;Parent=Msa0757830-mRNA-1
chr5_2	exon	12791901	12791938	12791901	ID=Msa0757830-mRNA-1:exon:5755;Parent=Msa0757830-mRNA-1
chr5_2	exon	12792026	12792142	12792026	ID=Msa0757830-mRNA-1:exon:5754;Parent=Msa0757830-mRNA-1
chr5_2	exon	12792875	12793040	12792875	ID=Msa0757830-mRNA-1:exon:5753;Parent=Msa0757830-mRNA-1
chr5_2	exon	12794017	12794520	12794017	ID=Msa0757830-mRNA-1:exon:5752;Parent=Msa0757830-mRNA-1
chr5_2	five_prime_UTR	12794314	12794520	12794314	ID=Msa0757830-mRNA-1:five_prime_utr;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12794017	12794313	12794017	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12792875	12793040	12792875	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12792026	12792142	12792026	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12791901	12791938	12791901	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12791557	12791707	12791557	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12791195	12791295	12791195	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12790747	12790845	12790747	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12790535	12790650	12790535	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12790025	12790199	12790025	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12789818	12789928	12789818	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12789642	12789720	12789642	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12789378	12789521	12789378	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12789178	12789291	12789178	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12788861	12788982	12788861	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12788488	12788608	12788488	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12788278	12788398	12788278	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12787919	12788020	12787919	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12787690	12787786	12787690	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12787402	12787527	12787402	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12786961	12787053	12786961	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12786751	12786856	12786751	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12786261	12786406	12786261	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12786070	12786159	12786070	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	CDS	12785803	12785931	12785803	ID=Msa0757830-mRNA-1:cds;Parent=Msa0757830-mRNA-1
chr5_2	three_prime_UTR	12785420	12785802	12785420	ID=Msa0757830-mRNA-1:three_prime_utr;Parent=Msa0757830-mRNA-1

Gene Sequence

>Msa0757830

ATGGATTCAATGGAGTTCAAGGTGAGTGAACTCTTGAAAGAAGTTCAAGTAGATTACTCACAGATTTCTAAACCTGTGGATGACGCCATTGCCGCTATCCAATCTTCCATCGACGAAATCCCTGATAACTATAATGTTACTGCTGATTTGGCACCGAGTTTTGTTAGGGATATTGGTGCTGATAAAGTGGAGTTCAAGTTTAAGAAACCATTGGTTATTCAAAAGGGTGGTAGTTACTCTACAGAGAGTCTTGCTAGGCCTGAATTAAATTTGGATCTTATTATAAGATTACCCAAGGAGTGCTTCCATGAGAAGGATTATTTGAACTACAGGTACCATGCTAAGAGGTGTCTTTATCTCTGCTTGGTGAAAAAGTATTTAGAGAAATCTCCATCTATTGGTAGGGTTGAATGGTCTACCCTGCAGAACGAAGCTCGAAAGCCTGTACTGATTGTGTATCCAGCTGCAAAGCTTGTTGATGTTGATGGTTTTTTTGTGAGAATTATTCCATCGGCCAAGGATATCTTTAGCATACCGAAGTTAAACATGACGCGTAATAACATTCATAATTCAAAGAATGAAGGAAGTTCCGTTCAAGCTACACAAAGTATAATTCTAGTATGGGCTCGACAGAGAAGTTCAATATATGTTCATGATTGCCTGAATGGATTTTTGCTATCCGTCATACTGGCACACCTTGCTTCTAGGCAACAAATTAGTAGGTCAATGAAGGCAATTGAAATAATTCGCATTACCTTGAACTTCATTGCCACTTCAGAGACATGGAGTCGAGGTCTCTACTTTCCAAAGGAAGGCGAAGGAAATATTACTAAAGAGGTCCAGATCTCTAACCTTCTTTTGTCTACCTTTGACAGAATGCAACTTAAAGGGTCATTTCCAGTTGTCATGTGTCATCCATCGGGGGCATTCAATTTGGCTTTTCGAATGTCTAGGATTGGTTTTTCTCAGCTTCAAGACGAGGCTGCTTTGACACTTAAATGCATGGAGAAGTGTAGAGGTGGTGGATTTGAGGAAGTTTTTATGACCAAGATTGACTATGCTGTTAAATATGATTATTGTATGAGAATAAACTTTAAGGGAAACAAGGAGCTATATGCATCAGGGTTTTGTATGGATGATGAATGCTGGAGATTGTACGAGGAGAAAATACATGCTATTTTAGCTAAAGGATTGAATGATAGAGCAAAATTTATTCGAGTAATATGGAGAAATGCACAATGCCAGTGGAGCGTGAATGATGGCTTGTCAATTCTTGATAAAGAGCCCTTGTTCATAGGAATTTCAGTCAGTGATTTGGAGAAAGCATTTAGGATGGTTGATATTGGTCCGAATGCTGAAAGTAAAGAAGAGGCTCTTGAATTTCGGAAGTTTTGGGGAGAAAAATCCGAGCTTAGAAGATTTAAAGACAGTAGAATTGCAGAAAGCACAGTATGGGAATGTCAGAAATGGGAAAGGCATCTGATTTTGAAAAAAATAGCCGAGCATGTGCTTAGTCGGCATCTATCTCTATCCAAGGAAAATATTGTAGTAGTTGTGGATCAACTTGATTTCTCTTTGGCTCATGGTGCTGTAGATCCGATAGCACACTCTGGAAATTTGCTCGAGGCATTTGATCTTCTATCAAAGCGTTTGCGTCTTATTGAAGGCCTCCCTTTGAAGGTGTCTAGTGTACAGCCTTTAGACTCTGCATTCAGGTTTACATCAGTCTTCCCTCCTGAACCTCATCTTCTAGCTAATGAAAAAATTGGATCTCTCAGACTGAATAAGTTGGTTCCATCATGCATTCAACCACTAGAAATTATGATTCAGTCTTCAAAAGAAGTGGGGATGACATGCACTGCAACTGAGGATGATGTGGATGTGCTAATGTCAGGATATGCATTTCGTCTTAAAATTTTGCATGAGAGGGCCCTTAGTTTACTCAAAGAATTTGGGAATGATAAAAAAACACGGGTACATTCTGCAGACAAGAAACTTTTGATTCGTGGTCAACATGCTAGCATGATTAATGGACTACAAAGTCGTTACCCAATATATGGACCAATAGTTAGATTTTGGGAGATATTGAATGTAGTAAGTGTACTCTTTAAACCTGATTTTCTCGTGGGAATGTCTCAAATCTCATTACCACGGTTGATGTGGCCATTCCCTTGGTTCCTGCAGTTGCTCTCAAACTATGATTGGACTTATTCTCCTTTGGTTGTTGACATAAATAATGACTTGAGCCCGAGTGATGGAAAAGAAATAAATGATAACTTTTTGCTAAAAAGAAAAAGTCAGGGAGAGAATGAGCAAGCTGTAGGGCCAGTGATGTTCTTGGCTACAGTTTATGATAAAGCATCTGAGGCCTGGACTGGATTATCACCTAGTGCATTGGAACTTAAAAGGTTAGTTGCATATGCTCGAAGCAGTGCAAATTTGTTGATGAAACTCACATTTCAGGAGGAAATTGGTCCATACAGATGGGAGTGCCTTTTGCGAACTCCTTTAAATAACTATGATGCAATCATTCTTCTCCACAAGGACAAACTTGCATATCCTCAGAGGCTTCTCTTCTCATCAGAAGTTGGTCATGGAACACAAGTTGCTAAAGGACATGCTGGTAAGTTCTTCCAACCCTTTTTGTTGCCTAAAGATTTGAAGGGTAGGCGGCCAGAGGAACTTAAAAATAAGTTGCTGGTAGACTTTGATCCATCAAGGTGCTTTATCAAAGATTTAGAGAAAGAGTTTTCCACCAAATTCCAATTATGGCATGATTCTTTAGGAGGCGATGCCATCGGCCTGACGTGGGAGAAATCGTATCCTTCCAAGAAGCGGAAACAAGAGGAAGTGGTCGAGAAAGGATACGACCCTCGGAAGGTGCTAAAAGCTGTAGGTGAAGTTGGAAAAGGGTTTGTGAGAAGTATATACTTTCTCAAGCCACCAAGGCTCGCAAATTAA

Protein sequence

>Msa0757830

MDSMEFKVSELLKEVQVDYSQISKPVDDAIAAIQSSIDEIPDNYNVTADLAPSFVRDIGADKVEFKFKKPLVIQKGGSYSTESLARPELNLDLIIRLPKECFHEKDYLNYRYHAKRCLYLCLVKKYLEKSPSIGRVEWSTLQNEARKPVLIVYPAAKLVDVDGFFVRIIPSAKDIFSIPKLNMTRNNIHNSKNEGSSVQATQSIILVWARQRSSIYVHDCLNGFLLSVILAHLASRQQISRSMKAIEIIRITLNFIATSETWSRGLYFPKEGEGNITKEVQISNLLLSTFDRMQLKGSFPVVMCHPSGAFNLAFRMSRIGFSQLQDEAALTLKCMEKCRGGGFEEVFMTKIDYAVKYDYCMRINFKGNKELYASGFCMDDECWRLYEEKIHAILAKGLNDRAKFIRVIWRNAQCQWSVNDGLSILDKEPLFIGISVSDLEKAFRMVDIGPNAESKEEALEFRKFWGEKSELRRFKDSRIAESTVWECQKWERHLILKKIAEHVLSRHLSLSKENIVVVVDQLDFSLAHGAVDPIAHSGNLLEAFDLLSKRLRLIEGLPLKVSSVQPLDSAFRFTSVFPPEPHLLANEKIGSLRLNKLVPSCIQPLEIMIQSSKEVGMTCTATEDDVDVLMSGYAFRLKILHERALSLLKEFGNDKKTRVHSADKKLLIRGQHASMINGLQSRYPIYGPIVRFWEILNVVSVLFKPDFLVGMSQISLPRLMWPFPWFLQLLSNYDWTYSPLVVDINNDLSPSDGKEINDNFLLKRKSQGENEQAVGPVMFLATVYDKASEAWTGLSPSALELKRLVAYARSSANLLMKLTFQEEIGPYRWECLLRTPLNNYDAIILLHKDKLAYPQRLLFSSEVGHGTQVAKGHAGKFFQPFLLPKDLKGRRPEELKNKLLVDFDPSRCFIKDLEKEFSTKFQLWHDSLGGDAIGLTWEKSYPSKKRKQEEVVEKGYDPRKVLKAVGEVGKGFVRSIYFLKPPRLAN*