AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0250520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0250520 MtrunA17_Chr2g0305781 98.517 472 2 2 1 469 77 546 0.0 917
Msa0250520 MtrunA17_Chr7g0259761 27.962 422 273 13 53 451 118 531 3.52e-35 137
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0250520 AT2G18710.1 82.780 482 70 3 1 469 68 549 0.0 793
Msa0250520 AT2G31530.1 28.235 425 267 13 53 451 147 559 4.98e-33 132

Find 112 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGCTTACCTACCGTTTA+AGG 0.117513 2_2:-39330708 Msa0250520:intron
TTATCAATCAATGGAAATTA+TGG 0.209023 2_2:-39329482 Msa0250520:three_prime_UTR
ATTCTGTTCTATTCCAATTC+TGG 0.216189 2_2:-39329318 Msa0250520:three_prime_UTR
GAGGATAGTTCAATTGATTT+TGG 0.223790 2_2:-39332382 Msa0250520:CDS
ATGGAAATTATGGATATAAA+AGG 0.233988 2_2:-39329472 Msa0250520:three_prime_UTR
CGTTGTTTATGTAAAGTTCT+TGG 0.245021 2_2:-39329351 Msa0250520:three_prime_UTR
TGCACACTTGACTGCATTCC+GGG 0.270529 2_2:-39329785 Msa0250520:CDS
AGGTTCCATTCCCAAGTTTC+AGG 0.271250 2_2:+39331031 None:intergenic
TCTTACTTGCCAGCTTCTTT+TGG 0.293036 2_2:-39330982 Msa0250520:CDS
AATCTAGACGCGTAGTTAAT+AGG 0.304266 2_2:+39330758 None:intergenic
TCTTAGTCGAATATCAGTTC+TGG 0.312877 2_2:-39329860 Msa0250520:CDS
ACTGCATTCCGGGGATTTGC+TGG 0.320442 2_2:-39329775 Msa0250520:CDS
GCTATCAAAAGTATGTTAAA+TGG 0.328201 2_2:+39330136 None:intergenic
ACATCTATTCTTATTCTTGT+TGG 0.328592 2_2:-39329751 Msa0250520:CDS
CTGCACACTTGACTGCATTC+CGG 0.330585 2_2:-39329786 Msa0250520:CDS
AGAATGTAGAACGTCAAAAT+AGG 0.337198 2_2:+39329405 None:intergenic
AATTGTTCGCTCACATCATC+TGG 0.339654 2_2:+39330076 None:intergenic
AAACAAGACCAGACCAGAAT+TGG 0.344087 2_2:+39329305 None:intergenic
CTATTACACTTTCCTACAAC+TGG 0.344454 2_2:-39330101 Msa0250520:CDS
GGAAACAACCAATCATTTAA+TGG 0.350131 2_2:+39329637 None:intergenic
TCCTTCTTTCTGTTGGTAGT+TGG 0.350967 2_2:-39330898 Msa0250520:CDS
GGCAAGCCGTGGCTCGTGGC+CGG 0.353467 2_2:-39329449 Msa0250520:three_prime_UTR
GTTCTATTCCAATTCTGGTC+TGG 0.365471 2_2:-39329313 Msa0250520:three_prime_UTR
AGTATTGACCATTAAATGAT+TGG 0.370320 2_2:-39329645 Msa0250520:exon
ACATCATCGTTAGCTCTTCC+TGG 0.375335 2_2:-39330507 Msa0250520:CDS
GCAGTCTGCTCAACAATTGC+AGG 0.392772 2_2:+39329805 None:intergenic
GCAAGCCGTGGCTCGTGGCC+GGG 0.400570 2_2:-39329448 Msa0250520:three_prime_UTR
CAAATTACTGACCTGAAACT+TGG 0.408846 2_2:-39331042 Msa0250520:CDS
CCGTGATTACAACGTACATT+GGG 0.408942 2_2:-39331068 Msa0250520:CDS
CTTAGTCGAATATCAGTTCT+GGG 0.412406 2_2:-39329859 Msa0250520:CDS
TTCTGAAGATCTTGCAACTT+GGG 0.415468 2_2:+39332103 None:intergenic
TGGAAATTATGGATATAAAA+GGG 0.417334 2_2:-39329471 Msa0250520:three_prime_UTR
TTCTTCAAAGGTCCTCTGCC+AGG 0.418038 2_2:-39332355 Msa0250520:CDS
CATCATCTGGATCCAGTTGT+AGG 0.418316 2_2:+39330089 None:intergenic
CATTGTGTCCTTCTTTCTGT+TGG 0.429476 2_2:-39330905 Msa0250520:CDS
TGCTCTGCAAAATTATATAC+AGG 0.433383 2_2:+39329580 None:intergenic
AGTTGGAATTGTCTATGTTC+AGG 0.434605 2_2:-39330881 Msa0250520:intron
TTTGGCAGGTCAATAGTTCT+GGG 0.435453 2_2:-39330551 Msa0250520:intron
AGGAGCAGCAGCTGCAATAG+AGG 0.436673 2_2:-39332401 Msa0250520:CDS
AAACCTCGAGGAGGAGGAGG+AGG 0.445397 2_2:-39332421 Msa0250520:CDS
AGACTTGGCATATGCTCTCT+TGG 0.449449 2_2:-39332181 Msa0250520:CDS
ACCAATACCACCACCAGAAA+AGG 0.461774 2_2:+39332204 None:intergenic
TTTCTTGTATTGTCAAGGCT+TGG 0.462644 2_2:-39332310 Msa0250520:CDS
TGTTGGATTCGCCATTGTAC+AGG 0.467660 2_2:-39332026 Msa0250520:intron
TACACTCGATATGCTTCTGT+TGG 0.467789 2_2:-39332043 Msa0250520:CDS
TAGGGTTTCTTGTATTGTCA+AGG 0.468985 2_2:-39332315 Msa0250520:CDS
TCTGTAATGTAAAGATCAAT+CGG 0.473409 2_2:-39329538 Msa0250520:three_prime_UTR
GATGATGTAGAAAATATGAT+AGG 0.473627 2_2:+39330522 None:intergenic
GGTACTTTAGCACGTTTCAC+TGG 0.478650 2_2:-39330486 Msa0250520:CDS
AAAGATGAGAGGACCTTAAA+CGG 0.479005 2_2:+39330695 None:intergenic
TTTCTGAAGATCTTGCAACT+TGG 0.479036 2_2:+39332102 None:intergenic
TATGTTAAATGGAAGATAGA+AGG 0.481243 2_2:+39330147 None:intergenic
GAACTAGGTTTATCAATCAA+TGG 0.481868 2_2:-39329491 Msa0250520:three_prime_UTR
TCAGTTGTTTGCATAGAACT+AGG 0.486363 2_2:-39329506 Msa0250520:three_prime_UTR
TTAACTCTTCTTCTTCTACA+TGG 0.487212 2_2:-39332477 Msa0250520:CDS
TGTTGTAAAGTCATTTACAT+AGG 0.488090 2_2:+39331131 None:intergenic
GTTCTATGCAAACAACTGAA+TGG 0.491612 2_2:+39329510 None:intergenic
AAGAAGAGTTAATACCTAAC+GGG 0.496614 2_2:+39332488 None:intergenic
TCTGTTATCTTATTGACACT+TGG 0.501427 2_2:-39331093 Msa0250520:CDS
CAGAAAAGAGAAGGTGAGGC+TGG 0.502761 2_2:-39332085 Msa0250520:CDS
AGTGTAATAGTAGTTGAAGA+AGG 0.517143 2_2:+39330114 None:intergenic
TCCGTGATTACAACGTACAT+TGG 0.519948 2_2:-39331069 Msa0250520:CDS
TTGAGAAACTTCCCTGGCAG+AGG 0.521457 2_2:+39332343 None:intergenic
GTAGCGAATTTCGACCCGTT+AGG 0.521598 2_2:-39332502 Msa0250520:CDS
TGGCTCGTGGCCGGGTGATG+TGG 0.524927 2_2:-39329440 Msa0250520:three_prime_UTR
CAAACAACTGCCACATCACC+CGG 0.527409 2_2:+39329430 None:intergenic
GCTGCAGTAGCTTTGAATCC+AGG 0.527425 2_2:-39330444 Msa0250520:CDS
AATGTAGCTGTACTTCTGCC+TGG 0.528569 2_2:+39330019 None:intergenic
GTTGTAAAGTCATTTACATA+GGG 0.531063 2_2:+39331132 None:intergenic
AAATTACTGACCTGAAACTT+GGG 0.532762 2_2:-39331041 Msa0250520:CDS
GGTGGTGGTATTGGTAGACT+TGG 0.533736 2_2:-39332196 Msa0250520:CDS
ATGTAAAGTTCTTGGCAACA+AGG 0.537673 2_2:-39329343 Msa0250520:three_prime_UTR
CCCAATGTACGTTGTAATCA+CGG 0.539847 2_2:+39331068 None:intergenic
TCCAACTACCAACAGAAAGA+AGG 0.539872 2_2:+39330897 None:intergenic
GAAGAAGAGTTAATACCTAA+CGG 0.545383 2_2:+39332487 None:intergenic
CTTGGTGTGTATATACCTCT+AGG 0.546349 2_2:-39332292 Msa0250520:CDS
CAGAAAGAAGGACACAATGA+TGG 0.551543 2_2:+39330909 None:intergenic
ACTGACCTGAAACTTGGGAA+TGG 0.555203 2_2:-39331036 Msa0250520:CDS
CATCACCCGGCCACGAGCCA+CGG 0.557008 2_2:+39329443 None:intergenic
ACAATCTGTGCATTGATGAA+AGG 0.557062 2_2:+39332151 None:intergenic
AATGTCCGACCAAAAGAAGC+TGG 0.561861 2_2:+39330973 None:intergenic
GGTAACAAGTCCGACATAGT+TGG 0.563139 2_2:+39330930 None:intergenic
TCTTCAGAAAAGAGAAGGTG+AGG 0.569860 2_2:-39332089 Msa0250520:CDS
CAAGATCTTCAGAAAAGAGA+AGG 0.570295 2_2:-39332094 Msa0250520:CDS
TCAATTCCACTTGTCAGACC+AGG 0.572539 2_2:-39330037 Msa0250520:CDS
GGAAATTATGGATATAAAAG+GGG 0.578428 2_2:-39329470 Msa0250520:three_prime_UTR
TTTAATGATGCCAACTATGT+CGG 0.578808 2_2:-39330940 Msa0250520:CDS
AAGGGGCAAGCCGTGGCTCG+TGG 0.579714 2_2:-39329453 Msa0250520:three_prime_UTR
GCACACTTGACTGCATTCCG+GGG 0.581736 2_2:-39329784 Msa0250520:CDS
TAGATGTTCCAGCAAATCCC+CGG 0.583086 2_2:+39329767 None:intergenic
TCTTCAAAGGTCCTCTGCCA+GGG 0.584956 2_2:-39332354 Msa0250520:CDS
CTTCTGCCTGGTCTGACAAG+TGG 0.593403 2_2:+39330031 None:intergenic
AGCGAACAATTGAAACGTCA+AGG 0.598941 2_2:-39330064 Msa0250520:CDS
GTTTGTGAATATCAAAAGAG+AGG 0.599776 2_2:+39331011 None:intergenic
AGGGACGCAGGAAAAGAACT+TGG 0.600736 2_2:+39331151 None:intergenic
ATGAGAGGACCTTAAACGGT+AGG 0.606091 2_2:+39330699 None:intergenic
TAAATTTCTGACCTGTACAA+TGG 0.607947 2_2:+39332015 None:intergenic
TCTAGATTCACCAGCAAAAG+CGG 0.612020 2_2:-39330743 Msa0250520:CDS
GTGAAACGTGCTAAAGTACC+AGG 0.612842 2_2:+39330489 None:intergenic
AACTATAATTCTGTAGACAA+AGG 0.613035 2_2:+39329616 None:intergenic
AAAAGCTTGAGAAACTTCCC+TGG 0.613913 2_2:+39332337 None:intergenic
GATATAAAAGGGGCAAGCCG+TGG 0.622664 2_2:-39329460 Msa0250520:three_prime_UTR
AAATGACTTTACAACAGAGT+GGG 0.636424 2_2:-39331124 Msa0250520:CDS
TTGGCAGGTCAATAGTTCTG+GGG 0.643969 2_2:-39330550 Msa0250520:intron
AGTCATTTACATAGGGACGC+AGG 0.644501 2_2:+39331139 None:intergenic
TAAATGACTTTACAACAGAG+TGG 0.657979 2_2:-39331125 Msa0250520:CDS
AGATTCACCAGCAAAAGCGG+TGG 0.659232 2_2:-39330740 Msa0250520:CDS
CGTGATTACAACGTACATTG+GGG 0.663302 2_2:-39331067 Msa0250520:CDS
GGTGTGTATATACCTCTAGG+TGG 0.698321 2_2:-39332289 Msa0250520:CDS
GCAGTAGCTTTGAATCCAGG+AGG 0.714613 2_2:-39330441 Msa0250520:intron
TCTCTGTTAACTCCACCTAG+AGG 0.718674 2_2:+39332277 None:intergenic
TCTAGGTGGAGTTAACAGAG+AGG 0.738479 2_2:-39332275 Msa0250520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATATAAAATATAATATA+TGG - chr2_2:39331900-39331919 Msa0250520:intron 0.0%
!! TTGATTTCAAAATTAATTCA+TGG + chr2_2:39330229-39330248 None:intergenic 15.0%
!!! ATGAATTAATTTTGAAATCA+AGG - chr2_2:39330228-39330247 Msa0250520:intron 15.0%
!!! TGAATTAATTTTGAAATCAA+GGG - chr2_2:39330229-39330248 Msa0250520:intron 15.0%
!!! CAATTTTATTATTATAAACC+CGG + chr2_2:39331393-39331412 None:intergenic 15.0%
!! AAAATGTACATTTAAGTAAA+GGG + chr2_2:39331612-39331631 None:intergenic 15.0%
!! AAAAATGTACATTTAAGTAA+AGG + chr2_2:39331613-39331632 None:intergenic 15.0%
!!! TAAATGTACATTTTTTTTGT+AGG - chr2_2:39331618-39331637 Msa0250520:intron 15.0%
!! TATTTGAATTCATGAAGAAA+AGG + chr2_2:39329865-39329884 None:intergenic 20.0%
!! AAACTTTGAATAAATCATGA+AGG + chr2_2:39330053-39330072 None:intergenic 20.0%
!! AGTAGAAAAAGATTTATGTT+AGG - chr2_2:39330181-39330200 Msa0250520:intron 20.0%
!! GTAGAAAAAGATTTATGTTA+GGG - chr2_2:39330182-39330201 Msa0250520:intron 20.0%
!! ATATTGTAATTACTGCATTT+AGG - chr2_2:39330308-39330327 Msa0250520:intron 20.0%
!! TATTGTAATTACTGCATTTA+GGG - chr2_2:39330309-39330328 Msa0250520:intron 20.0%
!! ACAACAACAAAATTATAAAC+TGG + chr2_2:39330592-39330611 None:intergenic 20.0%
!! AGAAATGTTTGATGAAATAT+AGG - chr2_2:39331505-39331524 Msa0250520:intron 20.0%
!! ATTAAGTGATGTAAAATGAA+TGG + chr2_2:39331885-39331904 None:intergenic 20.0%
!! TAAAATATAATATATGGTGC+AGG - chr2_2:39331906-39331925 Msa0250520:intron 20.0%
!! TTATCAATCAATGGAAATTA+TGG - chr2_2:39332308-39332327 Msa0250520:CDS 20.0%
!! ATGGAAATTATGGATATAAA+AGG - chr2_2:39332318-39332337 Msa0250520:CDS 20.0%
!! TGGAAATTATGGATATAAAA+GGG - chr2_2:39332319-39332338 Msa0250520:CDS 20.0%
!!! TCTTATTCTTTGAGATTCAT+AGG - chr2_2:39330019-39330038 Msa0250520:CDS 25.0%
! CTTGTTGAGATAATGTTAAA+AGG - chr2_2:39330103-39330122 Msa0250520:CDS 25.0%
!! TAACTTTAAAGAGTTACTCT+TGG - chr2_2:39330265-39330284 Msa0250520:intron 25.0%
! AGTAATTACAATATAGAGGA+GGG + chr2_2:39330302-39330321 None:intergenic 25.0%
! ATGCAGTAATTACAATATAG+AGG + chr2_2:39330306-39330325 None:intergenic 25.0%
! TATAACCAAGAGTCATTAAT+AGG + chr2_2:39330349-39330368 None:intergenic 25.0%
!! TGTTCTTCAATTTTCATTAC+AGG - chr2_2:39330609-39330628 Msa0250520:intron 25.0%
! GTTGTAAAGTCATTTACATA+GGG + chr2_2:39330661-39330680 None:intergenic 25.0%
! TGTTGTAAAGTCATTTACAT+AGG + chr2_2:39330662-39330681 None:intergenic 25.0%
! TACAGTAACATAAAAAAGGT+TGG + chr2_2:39331123-39331142 None:intergenic 25.0%
! GTACTACAGTAACATAAAAA+AGG + chr2_2:39331127-39331146 None:intergenic 25.0%
! TATCAAATACTATTCGAGTA+AGG + chr2_2:39331149-39331168 None:intergenic 25.0%
! AACATCTACATTGTCAAATT+TGG + chr2_2:39331215-39331234 None:intergenic 25.0%
!! ACAATGTAGATGTTCTATTT+TGG - chr2_2:39331221-39331240 Msa0250520:intron 25.0%
! GATGATGTAGAAAATATGAT+AGG + chr2_2:39331271-39331290 None:intergenic 25.0%
! AAGTAAAGGGAATCAATTTA+TGG + chr2_2:39331599-39331618 None:intergenic 25.0%
! TATGTTAAATGGAAGATAGA+AGG + chr2_2:39331646-39331665 None:intergenic 25.0%
!! GCTATCAAAAGTATGTTAAA+TGG + chr2_2:39331657-39331676 None:intergenic 25.0%
! ATTAATCAGTAAGGAAATCA+AGG + chr2_2:39331838-39331857 None:intergenic 25.0%
! ACATCTATTCTTATTCTTGT+TGG - chr2_2:39332039-39332058 Msa0250520:CDS 25.0%
!!! AGTATTGACCATTAAATGAT+TGG - chr2_2:39332145-39332164 Msa0250520:CDS 25.0%
! AACTATAATTCTGTAGACAA+AGG + chr2_2:39332177-39332196 None:intergenic 25.0%
! TCTGTAATGTAAAGATCAAT+CGG - chr2_2:39332252-39332271 Msa0250520:CDS 25.0%
! GGAAATTATGGATATAAAAG+GGG - chr2_2:39332320-39332339 Msa0250520:CDS 25.0%
AAGAAGAGTTAATACCTAAC+GGG + chr2_2:39329305-39329324 None:intergenic 30.0%
GAAGAAGAGTTAATACCTAA+CGG + chr2_2:39329306-39329325 None:intergenic 30.0%
TTAACTCTTCTTCTTCTACA+TGG - chr2_2:39329313-39329332 Msa0250520:three_prime_UTR 30.0%
!! GAGGATAGTTCAATTGATTT+TGG - chr2_2:39329408-39329427 Msa0250520:three_prime_UTR 30.0%
TAAATTTCTGACCTGTACAA+TGG + chr2_2:39329778-39329797 None:intergenic 30.0%
CAAGTGAAAAATGTCTTCAT+AGG - chr2_2:39329887-39329906 Msa0250520:intron 30.0%
TCTTCATGAATGATTCGTAA+AGG - chr2_2:39329918-39329937 Msa0250520:intron 30.0%
ATTGAACGACTCCTATAATT+CGG + chr2_2:39329951-39329970 None:intergenic 30.0%
TGAAATCAAGGGATATGATT+TGG - chr2_2:39330240-39330259 Msa0250520:intron 30.0%
CAGTAATTACAATATAGAGG+AGG + chr2_2:39330303-39330322 None:intergenic 30.0%
ATTGTCCTATTAATGACTCT+TGG - chr2_2:39330341-39330360 Msa0250520:intron 30.0%
GCGACTAAATTACATATTGA+TGG + chr2_2:39330378-39330397 None:intergenic 30.0%
! TTTCTTGGAAAGTGTAAATG+AGG - chr2_2:39330428-39330447 Msa0250520:intron 30.0%
! TTCTTGGAAAGTGTAAATGA+GGG - chr2_2:39330429-39330448 Msa0250520:intron 30.0%
!! ATCCATGCTTTTTAATAGCT+AGG - chr2_2:39330522-39330541 Msa0250520:CDS 30.0%
! CAATTTTCATTACAGGCTAT+TGG - chr2_2:39330616-39330635 Msa0250520:intron 30.0%
TAAATGACTTTACAACAGAG+TGG - chr2_2:39330665-39330684 Msa0250520:intron 30.0%
AAATGACTTTACAACAGAGT+GGG - chr2_2:39330666-39330685 Msa0250520:intron 30.0%
TCTGTTATCTTATTGACACT+TGG - chr2_2:39330697-39330716 Msa0250520:intron 30.0%
AAATTACTGACCTGAAACTT+GGG - chr2_2:39330749-39330768 Msa0250520:CDS 30.0%
GTTTGTGAATATCAAAAGAG+AGG + chr2_2:39330782-39330801 None:intergenic 30.0%
TTTAATGATGCCAACTATGT+CGG - chr2_2:39330850-39330869 Msa0250520:intron 30.0%
ATCTACATTGTCAAATTTGG+AGG + chr2_2:39331212-39331231 None:intergenic 30.0%
! GATGTTAAACCTTTTGCATT+TGG - chr2_2:39331443-39331462 Msa0250520:intron 30.0%
TGGAAGAGACAAAAGTTTAA+GGG + chr2_2:39331579-39331598 None:intergenic 30.0%
ATGGAAGAGACAAAAGTTTA+AGG + chr2_2:39331580-39331599 None:intergenic 30.0%
AGTGTAATAGTAGTTGAAGA+AGG + chr2_2:39331679-39331698 None:intergenic 30.0%
! TTCCTTACTGATTAATATGC+TGG - chr2_2:39331842-39331861 Msa0250520:intron 30.0%
AACCAGCATATTAATCAGTA+AGG + chr2_2:39331847-39331866 None:intergenic 30.0%
! TATGCTGGTTAAAGAACTAT+TGG - chr2_2:39331857-39331876 Msa0250520:intron 30.0%
!!! TTCAACATTTTTGGCAATCT+TGG - chr2_2:39331954-39331973 Msa0250520:intron 30.0%
!! CTCTATGTTTTTGTACTTCT+GGG + chr2_2:39332109-39332128 None:intergenic 30.0%
!! ACTCTATGTTTTTGTACTTC+TGG + chr2_2:39332110-39332129 None:intergenic 30.0%
GGAAACAACCAATCATTTAA+TGG + chr2_2:39332156-39332175 None:intergenic 30.0%
TGCTCTGCAAAATTATATAC+AGG + chr2_2:39332213-39332232 None:intergenic 30.0%
GAACTAGGTTTATCAATCAA+TGG - chr2_2:39332299-39332318 Msa0250520:CDS 30.0%
AGAATGTAGAACGTCAAAAT+AGG + chr2_2:39332388-39332407 None:intergenic 30.0%
CGTTGTTTATGTAAAGTTCT+TGG - chr2_2:39332439-39332458 Msa0250520:CDS 30.0%
ATTCTGTTCTATTCCAATTC+TGG - chr2_2:39332472-39332491 Msa0250520:CDS 30.0%
!! GATTTTGGTGACTTCTTCAA+AGG - chr2_2:39329423-39329442 Msa0250520:three_prime_UTR 35.0%
! GGAAGTTTCTCAAGCTTTTA+GGG - chr2_2:39329457-39329476 Msa0250520:three_prime_UTR 35.0%
TAGGGTTTCTTGTATTGTCA+AGG - chr2_2:39329475-39329494 Msa0250520:three_prime_UTR 35.0%
TTTCTTGTATTGTCAAGGCT+TGG - chr2_2:39329480-39329499 Msa0250520:three_prime_UTR 35.0%
! AGAGGCTTTTCTTGGAAATT+TGG - chr2_2:39329533-39329552 Msa0250520:three_prime_UTR 35.0%
! ACAATCTGTGCATTGATGAA+AGG + chr2_2:39329642-39329661 None:intergenic 35.0%
! TTCTGAAGATCTTGCAACTT+GGG + chr2_2:39329690-39329709 None:intergenic 35.0%
! TTTCTGAAGATCTTGCAACT+TGG + chr2_2:39329691-39329710 None:intergenic 35.0%
CAAGATCTTCAGAAAAGAGA+AGG - chr2_2:39329696-39329715 Msa0250520:CDS 35.0%
! AAGGTATCACACCGAATTAT+AGG - chr2_2:39329937-39329956 Msa0250520:intron 35.0%
TATATGCCTTCAACCTCAAA+GGG + chr2_2:39329977-39329996 None:intergenic 35.0%
ATATATGCCTTCAACCTCAA+AGG + chr2_2:39329978-39329997 None:intergenic 35.0%
!! TGCTTTCAAGTTCTCTTTCT+TGG - chr2_2:39330413-39330432 Msa0250520:intron 35.0%
TGTGCACTAGGAAAACATAT+CGG - chr2_2:39330484-39330503 Msa0250520:CDS 35.0%
GACCTAGCTATTAAAAAGCA+TGG + chr2_2:39330527-39330546 None:intergenic 35.0%
CAAATTACTGACCTGAAACT+TGG - chr2_2:39330748-39330767 Msa0250520:CDS 35.0%
AGTTGGAATTGTCTATGTTC+AGG - chr2_2:39330909-39330928 Msa0250520:CDS 35.0%
AATCTAGACGCGTAGTTAAT+AGG + chr2_2:39331035-39331054 None:intergenic 35.0%
AAAGATGAGAGGACCTTAAA+CGG + chr2_2:39331098-39331117 None:intergenic 35.0%
!! AAAGGTTGGTAAAAGATGAG+AGG + chr2_2:39331109-39331128 None:intergenic 35.0%
!!! TGTAGATGTTCTATTTTGGC+AGG - chr2_2:39331225-39331244 Msa0250520:intron 35.0%
ATTGTTCTGCTTGAAATGTC+TGG - chr2_2:39331409-39331428 Msa0250520:intron 35.0%
AAGGTTTAACATCGAATGTC+AGG + chr2_2:39331436-39331455 None:intergenic 35.0%
! GTTGCAATACATTCTGGAAA+TGG - chr2_2:39331534-39331553 Msa0250520:intron 35.0%
CTATTACACTTTCCTACAAC+TGG - chr2_2:39331689-39331708 Msa0250520:intron 35.0%
TCTTAGTCGAATATCAGTTC+TGG - chr2_2:39331930-39331949 Msa0250520:intron 35.0%
CTTAGTCGAATATCAGTTCT+GGG - chr2_2:39331931-39331950 Msa0250520:intron 35.0%
!!! AGTTCTGGGTTCAACATTTT+TGG - chr2_2:39331945-39331964 Msa0250520:intron 35.0%
GTTCTATGCAAACAACTGAA+TGG + chr2_2:39332283-39332302 None:intergenic 35.0%
TCAGTTGTTTGCATAGAACT+AGG - chr2_2:39332284-39332303 Msa0250520:CDS 35.0%
ATGTAAAGTTCTTGGCAACA+AGG - chr2_2:39332447-39332466 Msa0250520:CDS 35.0%
AAAAGCTTGAGAAACTTCCC+TGG + chr2_2:39329456-39329475 None:intergenic 40.0%
! GGGAAGTTTCTCAAGCTTTT+AGG - chr2_2:39329456-39329475 Msa0250520:three_prime_UTR 40.0%
! CTTGGTGTGTATATACCTCT+AGG - chr2_2:39329498-39329517 Msa0250520:three_prime_UTR 40.0%
! GTTAACAGAGAGGCTTTTCT+TGG - chr2_2:39329525-39329544 Msa0250520:three_prime_UTR 40.0%
TCTTCAGAAAAGAGAAGGTG+AGG - chr2_2:39329701-39329720 Msa0250520:CDS 40.0%
TACACTCGATATGCTTCTGT+TGG - chr2_2:39329747-39329766 Msa0250520:CDS 40.0%
!! AATTAGCCCTTTGAGGTTGA+AGG - chr2_2:39329968-39329987 Msa0250520:intron 40.0%
AGGCATATATGCAGGTTCAT+AGG - chr2_2:39329988-39330007 Msa0250520:intron 40.0%
TATATGCAGGTTCATAGGTG+TGG - chr2_2:39329993-39330012 Msa0250520:intron 40.0%
TCACCAGTGCTAGTATGTTT+AGG - chr2_2:39330154-39330173 Msa0250520:intron 40.0%
CTTCCTAAACATACTAGCAC+TGG + chr2_2:39330160-39330179 None:intergenic 40.0%
CAGTGCTAGTATGTTTAGGA+AGG - chr2_2:39330158-39330177 Msa0250520:intron 40.0%
TGTGATGTAGTGTTAAGTGC+TGG + chr2_2:39330549-39330568 None:intergenic 40.0%
TCCGTGATTACAACGTACAT+TGG - chr2_2:39330721-39330740 Msa0250520:CDS 40.0%
CCCAATGTACGTTGTAATCA+CGG + chr2_2:39330725-39330744 None:intergenic 40.0%
CCGTGATTACAACGTACATT+GGG - chr2_2:39330722-39330741 Msa0250520:CDS 40.0%
CGTGATTACAACGTACATTG+GGG - chr2_2:39330723-39330742 Msa0250520:CDS 40.0%
! TCTTACTTGCCAGCTTCTTT+TGG - chr2_2:39330808-39330827 Msa0250520:intron 40.0%
CAGAAAGAAGGACACAATGA+TGG + chr2_2:39330884-39330903 None:intergenic 40.0%
CATTGTGTCCTTCTTTCTGT+TGG - chr2_2:39330885-39330904 Msa0250520:CDS 40.0%
!! TCCTTCTTTCTGTTGGTAGT+TGG - chr2_2:39330892-39330911 Msa0250520:CDS 40.0%
TCCAACTACCAACAGAAAGA+AGG + chr2_2:39330896-39330915 None:intergenic 40.0%
TTGCAACACTGATGATTCTC+AGG - chr2_2:39330992-39331011 Msa0250520:CDS 40.0%
TCTAGATTCACCAGCAAAAG+CGG - chr2_2:39331047-39331066 Msa0250520:CDS 40.0%
ATCTGCTTACCTACCGTTTA+AGG - chr2_2:39331082-39331101 Msa0250520:CDS 40.0%
! TTTTGGCAGGTCAATAGTTC+TGG - chr2_2:39331238-39331257 Msa0250520:intron 40.0%
TTTGGCAGGTCAATAGTTCT+GGG - chr2_2:39331239-39331258 Msa0250520:intron 40.0%
!! GTATGTGGTTGGTTTATCTC+CGG - chr2_2:39331371-39331390 Msa0250520:intron 40.0%
!! TATGTGGTTGGTTTATCTCC+GGG - chr2_2:39331372-39331391 Msa0250520:intron 40.0%
! CATAGAGCACCAAATGCAAA+AGG + chr2_2:39331455-39331474 None:intergenic 40.0%
CCAGAATGTATTGCAACAGA+AGG + chr2_2:39331531-39331550 None:intergenic 40.0%
CCTTCTGTTGCAATACATTC+TGG - chr2_2:39331528-39331547 Msa0250520:intron 40.0%
AATTGTTCGCTCACATCATC+TGG + chr2_2:39331717-39331736 None:intergenic 40.0%
AGCGAACAATTGAAACGTCA+AGG - chr2_2:39331726-39331745 Msa0250520:intron 40.0%
GTTCTATTCCAATTCTGGTC+TGG - chr2_2:39332477-39332496 Msa0250520:CDS 40.0%
AAACAAGACCAGACCAGAAT+TGG + chr2_2:39332488-39332507 None:intergenic 40.0%
GGTGTGTATATACCTCTAGG+TGG - chr2_2:39329501-39329520 Msa0250520:three_prime_UTR 45.0%
TCTCTGTTAACTCCACCTAG+AGG + chr2_2:39329516-39329535 None:intergenic 45.0%
TCTAGGTGGAGTTAACAGAG+AGG - chr2_2:39329515-39329534 Msa0250520:three_prime_UTR 45.0%
! AGCACTCTAGACTCCTTTTC+TGG - chr2_2:39329573-39329592 Msa0250520:three_prime_UTR 45.0%
! ACTCTAGACTCCTTTTCTGG+TGG - chr2_2:39329576-39329595 Msa0250520:three_prime_UTR 45.0%
!!! TCCTTTTCTGGTGGTGGTAT+TGG - chr2_2:39329585-39329604 Msa0250520:three_prime_UTR 45.0%
ACCAATACCACCACCAGAAA+AGG + chr2_2:39329589-39329608 None:intergenic 45.0%
AGACTTGGCATATGCTCTCT+TGG - chr2_2:39329609-39329628 Msa0250520:three_prime_UTR 45.0%
TGTTGGATTCGCCATTGTAC+AGG - chr2_2:39329764-39329783 Msa0250520:CDS 45.0%
GTCGTTCAATTAGCCCTTTG+AGG - chr2_2:39329961-39329980 Msa0250520:intron 45.0%
! GAGGTTGAAGGCATATATGC+AGG - chr2_2:39329980-39329999 Msa0250520:intron 45.0%
!! ACATACTAGCACTGGTGAGA+CGG + chr2_2:39330152-39330171 None:intergenic 45.0%
! GTTTTCCTAGTGCACAACAG+TGG + chr2_2:39330480-39330499 None:intergenic 45.0%
AGTCATTTACATAGGGACGC+AGG + chr2_2:39330654-39330673 None:intergenic 45.0%
ACTGACCTGAAACTTGGGAA+TGG - chr2_2:39330754-39330773 Msa0250520:CDS 45.0%
AGGTTCCATTCCCAAGTTTC+AGG + chr2_2:39330762-39330781 None:intergenic 45.0%
! ACTTGCCAGCTTCTTTTGGT+CGG - chr2_2:39330812-39330831 Msa0250520:intron 45.0%
AATGTCCGACCAAAAGAAGC+TGG + chr2_2:39330820-39330839 None:intergenic 45.0%
GGTAACAAGTCCGACATAGT+TGG + chr2_2:39330863-39330882 None:intergenic 45.0%
ATGAGAGGACCTTAAACGGT+AGG + chr2_2:39331094-39331113 None:intergenic 45.0%
! TTGGCAGGTCAATAGTTCTG+GGG - chr2_2:39331240-39331259 Msa0250520:intron 45.0%
! ACATCATCGTTAGCTCTTCC+TGG - chr2_2:39331283-39331302 Msa0250520:intron 45.0%
! GTGAAACGTGCTAAAGTACC+AGG + chr2_2:39331304-39331323 None:intergenic 45.0%
GGTACTTTAGCACGTTTCAC+TGG - chr2_2:39331304-39331323 Msa0250520:intron 45.0%
! CTTTGAATCCAGGAGGTATG+TGG - chr2_2:39331356-39331375 Msa0250520:intron 45.0%
TAAACCAACCACATACCTCC+TGG + chr2_2:39331367-39331386 None:intergenic 45.0%
CATCATCTGGATCCAGTTGT+AGG + chr2_2:39331704-39331723 None:intergenic 45.0%
TCAATTCCACTTGTCAGACC+AGG - chr2_2:39331753-39331772 Msa0250520:intron 45.0%
AATGTAGCTGTACTTCTGCC+TGG + chr2_2:39331774-39331793 None:intergenic 45.0%
! TAAGGAAATCAAGGAGCGTG+GGG + chr2_2:39331829-39331848 None:intergenic 45.0%
! GTAAGGAAATCAAGGAGCGT+GGG + chr2_2:39331830-39331849 None:intergenic 45.0%
AGTAAGGAAATCAAGGAGCG+TGG + chr2_2:39331831-39331850 None:intergenic 45.0%
!! TTTTTGGCAATCTTGGCTGC+TGG - chr2_2:39331961-39331980 Msa0250520:intron 45.0%
TAGATGTTCCAGCAAATCCC+CGG + chr2_2:39332026-39332045 None:intergenic 45.0%
GTAGCGAATTTCGACCCGTT+AGG - chr2_2:39329288-39329307 Msa0250520:three_prime_UTR 50.0%
GAGAGCTCAGAAAAACCTCG+AGG - chr2_2:39329357-39329376 Msa0250520:three_prime_UTR 50.0%
AGCTCAGAAAAACCTCGAGG+AGG - chr2_2:39329360-39329379 Msa0250520:three_prime_UTR 50.0%
TCAGAAAAACCTCGAGGAGG+AGG - chr2_2:39329363-39329382 Msa0250520:three_prime_UTR 50.0%
TTCTTCAAAGGTCCTCTGCC+AGG - chr2_2:39329435-39329454 Msa0250520:three_prime_UTR 50.0%
TCTTCAAAGGTCCTCTGCCA+GGG - chr2_2:39329436-39329455 Msa0250520:three_prime_UTR 50.0%
TTGAGAAACTTCCCTGGCAG+AGG + chr2_2:39329450-39329469 None:intergenic 50.0%
!! CTAGACTCCTTTTCTGGTGG+TGG - chr2_2:39329579-39329598 Msa0250520:three_prime_UTR 50.0%
!! GGTGGTGGTATTGGTAGACT+TGG - chr2_2:39329594-39329613 Msa0250520:three_prime_UTR 50.0%
CAGAAAAGAGAAGGTGAGGC+TGG - chr2_2:39329705-39329724 Msa0250520:CDS 50.0%
CTCAACCACTGTTGTGCACT+AGG - chr2_2:39330472-39330491 Msa0250520:CDS 50.0%
AGGGACGCAGGAAAAGAACT+TGG + chr2_2:39330642-39330661 None:intergenic 50.0%
AGATTCACCAGCAAAAGCGG+TGG - chr2_2:39331050-39331069 Msa0250520:CDS 50.0%
!! TTCAAGTCCACCGCTTTTGC+TGG + chr2_2:39331060-39331079 None:intergenic 50.0%
!! GCTGCAGTAGCTTTGAATCC+AGG - chr2_2:39331346-39331365 Msa0250520:intron 50.0%
!! GCAGTAGCTTTGAATCCAGG+AGG - chr2_2:39331349-39331368 Msa0250520:intron 50.0%
! GAATCCAGGAGGTATGTGGT+TGG - chr2_2:39331360-39331379 Msa0250520:intron 50.0%
GCAGTCTGCTCAACAATTGC+AGG + chr2_2:39331988-39332007 None:intergenic 50.0%
CTGCACACTTGACTGCATTC+CGG - chr2_2:39332004-39332023 Msa0250520:intron 50.0%
TGCACACTTGACTGCATTCC+GGG - chr2_2:39332005-39332024 Msa0250520:intron 50.0%
GATATAAAAGGGGCAAGCCG+TGG - chr2_2:39332330-39332349 Msa0250520:CDS 50.0%
CAAACAACTGCCACATCACC+CGG + chr2_2:39332363-39332382 None:intergenic 50.0%
GAAAAACCTCGAGGAGGAGG+AGG - chr2_2:39329366-39329385 Msa0250520:three_prime_UTR 55.0%
AGGAGCAGCAGCTGCAATAG+AGG - chr2_2:39329389-39329408 Msa0250520:three_prime_UTR 55.0%
CTTCTGCCTGGTCTGACAAG+TGG + chr2_2:39331762-39331781 None:intergenic 55.0%
GCACACTTGACTGCATTCCG+GGG - chr2_2:39332006-39332025 Msa0250520:intron 55.0%
ACTGCATTCCGGGGATTTGC+TGG - chr2_2:39332015-39332034 Msa0250520:intron 55.0%
AAACCTCGAGGAGGAGGAGG+AGG - chr2_2:39329369-39329388 Msa0250520:three_prime_UTR 60.0%
GGAGCGTGGGGCTAGAGAGA+AGG + chr2_2:39331817-39331836 None:intergenic 65.0%
GCTCCTCCTCCTCCTCCTCG+AGG + chr2_2:39329375-39329394 None:intergenic 70.0%
AAGGGGCAAGCCGTGGCTCG+TGG - chr2_2:39332337-39332356 Msa0250520:CDS 70.0%
CATCACCCGGCCACGAGCCA+CGG + chr2_2:39332350-39332369 None:intergenic 70.0%
TGGCTCGTGGCCGGGTGATG+TGG - chr2_2:39332350-39332369 Msa0250520:CDS 70.0%
GGCAAGCCGTGGCTCGTGGC+CGG - chr2_2:39332341-39332360 Msa0250520:CDS 75.0%
GCAAGCCGTGGCTCGTGGCC+GGG - chr2_2:39332342-39332361 Msa0250520:CDS 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 39329279 39332533 39329279 ID=Msa0250520;Name=Msa0250520
chr2_2 mRNA 39329279 39332533 39329279 ID=Msa0250520-mRNA-1;Parent=Msa0250520;Name=Msa0250520-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.83|1|1|1|6|381|469
chr2_2 exon 39329279 39329884 39329279 ID=Msa0250520-mRNA-1:exon:12195;Parent=Msa0250520-mRNA-1
chr2_2 exon 39330009 39330172 39330009 ID=Msa0250520-mRNA-1:exon:12194;Parent=Msa0250520-mRNA-1
chr2_2 exon 39330442 39330565 39330442 ID=Msa0250520-mRNA-1:exon:12193;Parent=Msa0250520-mRNA-1
chr2_2 exon 39330709 39330798 39330709 ID=Msa0250520-mRNA-1:exon:12192;Parent=Msa0250520-mRNA-1
chr2_2 exon 39330882 39331181 39330882 ID=Msa0250520-mRNA-1:exon:12191;Parent=Msa0250520-mRNA-1
chr2_2 exon 39332027 39332533 39332027 ID=Msa0250520-mRNA-1:exon:12190;Parent=Msa0250520-mRNA-1
chr2_2 CDS 39332027 39332533 39332027 ID=Msa0250520-mRNA-1:cds;Parent=Msa0250520-mRNA-1
chr2_2 CDS 39330882 39331181 39330882 ID=Msa0250520-mRNA-1:cds;Parent=Msa0250520-mRNA-1
chr2_2 CDS 39330709 39330798 39330709 ID=Msa0250520-mRNA-1:cds;Parent=Msa0250520-mRNA-1
chr2_2 CDS 39330442 39330565 39330442 ID=Msa0250520-mRNA-1:cds;Parent=Msa0250520-mRNA-1
chr2_2 CDS 39330009 39330172 39330009 ID=Msa0250520-mRNA-1:cds;Parent=Msa0250520-mRNA-1
chr2_2 CDS 39329660 39329884 39329660 ID=Msa0250520-mRNA-1:cds;Parent=Msa0250520-mRNA-1
chr2_2 three_prime_UTR 39329279 39329659 39329279 ID=Msa0250520-mRNA-1:three_prime_utr;Parent=Msa0250520-mRNA-1
Gene Sequence

>Msa0250520

AGCTGCGACGTAGCGAATTTCGACCCGTTAGGTATTAACTCTTCTTCTTCTACATGGAAAAATATTGTGAGTTTGTTTGAGAGCTCAGAAAAACCTCGAGGAGGAGGAGGAGGAGCAGCAGCTGCAATAGAGGATAGTTCAATTGATTTTGGTGACTTCTTCAAAGGTCCTCTGCCAGGGAAGTTTCTCAAGCTTTTAGGGTTTCTTGTATTGTCAAGGCTTGGTGTGTATATACCTCTAGGTGGAGTTAACAGAGAGGCTTTTCTTGGAAATTTGGATCAGAATAGTTTGTTAAGCACTCTAGACTCCTTTTCTGGTGGTGGTATTGGTAGACTTGGCATATGCTCTCTTGGTATTGTTCCTTTCATCAATGCACAGATTGTTTTTCAGCTTCTTGCTCAAGTATATCCCAAGTTGCAAGATCTTCAGAAAAGAGAAGGTGAGGCTGGAAGAAAGAAAATTCTTCAGTACACTCGATATGCTTCTGTTGGATTCGCCATTGTACAGGCTATTGGCCAAGTTCTTTTCCTGCGTCCCTATGTAAATGACTTTACAACAGAGTGGGCTCTTACTTCTGTTATCTTATTGACACTTGGCTCCGTGATTACAACGTACATTGGGGAGCAAATTACTGACCTGAAACTTGGGAATGGAACCTCTCTTTTGATATTCACAAACATTATCTCTTACTTGCCAGCTTCTTTTGGTCGGACATTTGCACAAGCATTTAATGATGCCAACTATGTCGGACTTGTTACCATCATTGTGTCCTTCTTTCTGTTGGTAGTTGGAATTGTCTATGTTCAGGAAGCAGAGAGAAAAATTCCTATTAACTACGCGTCTAGATTCACCAGCAAAAGCGGTGGACTTGAAAAATCTGCTTACCTACCGTTTAAGGTCAATAGTTCTGGGGTAATGCCTATCATATTTTCTACATCATCGTTAGCTCTTCCTGGTACTTTAGCACGTTTCACTGGTTTAAGTGCACTAAAAAATGCTGCAGTAGCTTTGAATCCAGGAGGCTCCTTCTATCTTCCATTTAACATACTTTTGATAGCCTTCTTCAACTACTATTACACTTTCCTACAACTGGATCCAGATGATGTGAGCGAACAATTGAAACGTCAAGGTGCTTCAATTCCACTTGTCAGACCAGGCAGAAGTACAGCTACATTTATTAAAACAGTTCTTAGTCGAATATCAGTTCTGGGTTCAACATTTTTGGCAATCTTGGCTGCTGGACCTGCAATTGTTGAGCAGACTGCACACTTGACTGCATTCCGGGGATTTGCTGGAACATCTATTCTTATTCTTGTTGGTTGTGCAACAGACACTGCTAGAAAAGTTCGAGCTGAGATTATATCCCAGAAGTACAAAAACATAGAGTTATATGACTTTGACAAGTATTGA

Protein sequence

>Msa0250520

SCDVANFDPLGINSSSSTWKNIVSLFESSEKPRGGGGGAAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLVLSRLGVYIPLGGVNREAFLGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQVYPKLQDLQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLFLRPYVNDFTTEWALTSVILLTLGSVITTYIGEQITDLKLGNGTSLLIFTNIISYLPASFGRTFAQAFNDANYVGLVTIIVSFFLLVVGIVYVQEAERKIPINYASRFTSKSGGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLSALKNAAVALNPGGSFYLPFNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGRSTATFIKTVLSRISVLGSTFLAILAAGPAIVEQTAHLTAFRGFAGTSILILVGCATDTARKVRAEIISQKYKNIELYDFDKY*