AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0130800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130800 MtrunA17_Chr1g0199231 97.794 408 9 0 1 408 1 408 0.0 822
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130800 AT2G39140.1 61.538 403 132 5 14 402 16 409 2.89e-162 462
Msa0130800 AT2G39140.2 61.818 385 124 5 14 384 16 391 1.37e-154 442
Msa0130800 AT3G43340.1 72.603 73 20 0 312 384 2 74 7.68e-32 115

Find 136 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCGTGCTTATTCATATT+TGG 0.134796 1_3:+61239412 Msa0130800:three_prime_UTR
AGAGAAAGAGATGTTGAATT+TGG 0.209116 1_3:-61235324 None:intergenic
CGCCTTGATGTTGCAACTAC+TGG 0.226708 1_3:+61237074 Msa0130800:CDS
AGCCATTTCTTTGAGAAAAC+TGG 0.228183 1_3:-61235486 None:intergenic
AATTGTTGTTCCCTCACTTA+TGG 0.249775 1_3:-61237604 None:intergenic
CCATTTCTTCTTCGAATTGC+AGG 0.271506 1_3:-61235193 None:intergenic
CTAACATCATTAGGTTATTC+AGG 0.276302 1_3:-61239745 None:intergenic
CTGAGGAGCGGGCTTAGGTT+TGG 0.277625 1_3:-61235357 None:intergenic
TGAGGAGCGGGCTTAGGTTT+GGG 0.298268 1_3:-61235356 None:intergenic
ACTTTGTGAGGCTGCCTCTT+AGG 0.304224 1_3:-61236627 None:intergenic
AGATACATTGCAACAGTTAA+TGG 0.307477 1_3:+61237555 Msa0130800:intron
GAATTGCAGGGAATTAAAAC+TGG 0.314576 1_3:-61235180 None:intergenic
AAAGCTAATTCTTAATTTGT+TGG 0.315258 1_3:+61239377 Msa0130800:exon
CACAGGTACATATGCTCATC+TGG 0.322263 1_3:+61236768 Msa0130800:intron
ATTCTATAATGAAAATATTA+AGG 0.324555 1_3:+61235634 Msa0130800:CDS
TTGCCTAAACTAACATCATT+AGG 0.328433 1_3:-61239754 None:intergenic
TAACCTAATGATGTTAGTTT+AGG 0.339775 1_3:+61239751 Msa0130800:three_prime_UTR
CATGCATGAGGTTGGGATAT+TGG 0.342323 1_3:+61239671 Msa0130800:three_prime_UTR
CTGATGCACGGGGCATTACT+TGG 0.344352 1_3:+61239495 Msa0130800:three_prime_UTR
TCCAATAGCTCAAATCAAAA+AGG 0.351177 1_3:-61239470 None:intergenic
TATGTATTGTAATTTGTAAA+TGG 0.358645 1_3:+61239712 Msa0130800:three_prime_UTR
AAAGGCAAGGTTACTGTTAA+CGG 0.361362 1_3:+61236087 Msa0130800:CDS
GGAAGTAACTCCACACTATC+AGG 0.364773 1_3:-61237645 None:intergenic
AGTAAGTTTGGTTGATTTGA+TGG 0.374594 1_3:-61235258 None:intergenic
CCTTCGTCATCGTCGTGGTC+GGG 0.381704 1_3:-61235395 None:intergenic
CCTGCAATTCGAAGAAGAAA+TGG 0.389883 1_3:+61235193 Msa0130800:exon
AGTAAGGTTCTTGCAGCCTC+TGG 0.398900 1_3:+61235677 Msa0130800:CDS
TTGGGCTGAGGAGCGGGCTT+AGG 0.400803 1_3:-61235362 None:intergenic
GCGGAAGGTAGAAGTAAGTT+TGG 0.404517 1_3:-61235270 None:intergenic
TACCCGGAGAATAGTATGTA+TGG 0.426015 1_3:-61235103 None:intergenic
ATCCGTTGGCTTTGCATACC+CGG 0.429354 1_3:-61235119 None:intergenic
CATATGCTCATCTGGGGAAA+AGG 0.438768 1_3:+61236776 Msa0130800:CDS
GACATAGATATTATCCTTTG+AGG 0.442041 1_3:-61236589 None:intergenic
CTTCGTCATCGTCGTGGTCG+GGG 0.443140 1_3:-61235394 None:intergenic
AGAGATGTTGAATTTGGAAG+AGG 0.447684 1_3:-61235318 None:intergenic
TCCGACAAATCTAAAAGCAT+TGG 0.454203 1_3:+61239340 Msa0130800:CDS
CAAACGCTCTAGAAAGTTTG+TGG 0.455169 1_3:-61239534 None:intergenic
AGAGGAGGAACAAGTGAAGC+GGG 0.458326 1_3:-61235300 None:intergenic
GCCTTGATGTTGCAACTACT+GGG 0.458959 1_3:+61237075 Msa0130800:CDS
TTCTGCTTTCAGTTGCATCT+AGG 0.459577 1_3:+61236040 Msa0130800:intron
CACAAAATTTACCCAAGGTC+TGG 0.462522 1_3:-61239146 None:intergenic
CGTGAACTTGTTAAAAGTGC+TGG 0.462857 1_3:+61238385 Msa0130800:CDS
TTAGACTTCCACCAGACCTT+GGG 0.465011 1_3:+61239135 Msa0130800:CDS
AAGGATAATATCTATGTCAA+TGG 0.465940 1_3:+61236594 Msa0130800:CDS
ATATGATCATGCATGAGGTT+GGG 0.468450 1_3:+61239664 Msa0130800:three_prime_UTR
CATATGATCATGCATGAGGT+TGG 0.469802 1_3:+61239663 Msa0130800:three_prime_UTR
CTTGCCTTGAACAAACCAAA+AGG 0.469860 1_3:+61236654 Msa0130800:CDS
TTCGTTTCTATCTTATCCGT+TGG 0.470518 1_3:-61235133 None:intergenic
AGTCGAGATCTTTGTGTATC+CGG 0.473722 1_3:-61237675 None:intergenic
ACCTTCGTCATCGTCGTGGT+CGG 0.479174 1_3:-61235396 None:intergenic
ACATAGATATTATCCTTTGA+GGG 0.479306 1_3:-61236588 None:intergenic
CTGCAATTCGAAGAAGAAAT+GGG 0.483274 1_3:+61235194 Msa0130800:exon
TTCTGTCTGTAATACACCTC+AGG 0.490860 1_3:+61236110 Msa0130800:CDS
CATTTCTTCTTCGAATTGCA+GGG 0.491259 1_3:-61235192 None:intergenic
GATGTTGAATTTGGAAGAGG+AGG 0.492386 1_3:-61235315 None:intergenic
CCGACAAATCTAAAAGCATT+GGG 0.498398 1_3:+61239341 Msa0130800:CDS
GGCTTAGGTTTGGGATTAGA+CGG 0.499244 1_3:-61235347 None:intergenic
AACCCATACATACTATTCTC+CGG 0.501645 1_3:+61235100 Msa0130800:five_prime_UTR
GCTATTGGATTCTGATGCAC+GGG 0.505540 1_3:+61239484 Msa0130800:three_prime_UTR
GCCATTTCTTTGAGAAAACT+GGG 0.508967 1_3:-61235485 None:intergenic
TTAATGGTCTAGTTCATAAG+AGG 0.509198 1_3:+61237571 Msa0130800:CDS
CGCCCTACAGTAAATAGTCT+TGG 0.512262 1_3:-61237053 None:intergenic
AGCTATTGGATTCTGATGCA+CGG 0.513897 1_3:+61239483 Msa0130800:three_prime_UTR
CTCCGGTACTCGTCTCAGTA+AGG 0.519428 1_3:+61235661 Msa0130800:CDS
TTTAGACTTCCACCAGACCT+TGG 0.520181 1_3:+61239134 Msa0130800:CDS
TGGATTGTTCGCGGCGAAGA+TGG 0.524610 1_3:+61235434 Msa0130800:CDS
TTACTTATTGTGACTAATGA+TGG 0.528738 1_3:+61237098 Msa0130800:CDS
TGTGAGGCTGCCTCTTAGGA+AGG 0.533107 1_3:-61236623 None:intergenic
TAAAGCTATCATCAATGAGT+TGG 0.533292 1_3:+61239441 Msa0130800:three_prime_UTR
TGTTAAAAGTGCTGGACTTG+AGG 0.534563 1_3:+61238393 Msa0130800:CDS
AGTGAGGGAACAACAATTGA+GGG 0.534706 1_3:+61237609 Msa0130800:CDS
TGATGCACGGGGCATTACTT+GGG 0.534845 1_3:+61239496 Msa0130800:three_prime_UTR
CCTACAGTAAATAGTCTTGG+TGG 0.537220 1_3:-61237050 None:intergenic
GAAATGGCTAATGCTCAAAC+CGG 0.538638 1_3:+61235500 Msa0130800:CDS
TTGCCTTGAACAAACCAAAA+GGG 0.538722 1_3:+61236655 Msa0130800:CDS
TCTTTGAGAAAACTGGGAGG+AGG 0.540003 1_3:-61235479 None:intergenic
ACCCAGTAGTTGCAACATCA+AGG 0.544365 1_3:-61237076 None:intergenic
ACCCATACATACTATTCTCC+GGG 0.545153 1_3:+61235101 Msa0130800:five_prime_UTR
CTTTGTGTATCCGGCATACG+TGG 0.548725 1_3:-61237666 None:intergenic
AACCTTACTGAGACGAGTAC+CGG 0.549065 1_3:-61235663 None:intergenic
ACAGGTACATATGCTCATCT+GGG 0.550256 1_3:+61236769 Msa0130800:intron
CTACAGTAAATAGTCTTGGT+GGG 0.551312 1_3:-61237049 None:intergenic
TCATTAAAGCGAGTTCGCAT+CGG 0.551959 1_3:+61239107 Msa0130800:CDS
ATGATTCCGTGGATTGTTCG+CGG 0.552805 1_3:+61235425 Msa0130800:CDS
TACAGTAAATAGTCTTGGTG+GGG 0.557053 1_3:-61237048 None:intergenic
GGATTCTCATAGGTTCATGA+TGG 0.557261 1_3:+61238346 Msa0130800:intron
TTAAAGCGAGTTCGCATCGG+TGG 0.557346 1_3:+61239110 Msa0130800:CDS
AATGGGTTCAGCGGCAACAA+TGG 0.557684 1_3:+61235211 Msa0130800:exon
AGGAGGAACAAGTGAAGCGG+GGG 0.561822 1_3:-61235298 None:intergenic
AAAATTTACCCAAGGTCTGG+TGG 0.562045 1_3:-61239143 None:intergenic
CCACCAAGACTATTTACTGT+AGG 0.562464 1_3:+61237050 Msa0130800:CDS
CACCAAGACTATTTACTGTA+GGG 0.562854 1_3:+61237051 Msa0130800:CDS
ATGGAAGCCGCCTTCCTAAG+AGG 0.566262 1_3:+61236613 Msa0130800:CDS
TTGTGGTGTGTAGACTAAAG+TGG 0.567098 1_3:+61236563 Msa0130800:intron
GGAGTTACTTCCACGTATGC+CGG 0.567121 1_3:+61237656 Msa0130800:CDS
AAAAGATAGTATTACTGAGA+GGG 0.567825 1_3:+61235077 Msa0130800:five_prime_UTR
AAGTGAGGGAACAACAATTG+AGG 0.568613 1_3:+61237608 Msa0130800:CDS
GAGGAGGAACAAGTGAAGCG+GGG 0.569560 1_3:-61235299 None:intergenic
TTCGTCATCGTCGTGGTCGG+GGG 0.575147 1_3:-61235393 None:intergenic
AAGGTTCTTGCAGCCTCTGG+AGG 0.578878 1_3:+61235680 Msa0130800:CDS
AAATTAAACTAGATAGGAAG+CGG 0.579236 1_3:+61239630 Msa0130800:three_prime_UTR
TCTCATAGGTTCATGATGGA+AGG 0.583436 1_3:+61238350 Msa0130800:intron
TCTTCGCCGCGAACAATCCA+CGG 0.589732 1_3:-61235431 None:intergenic
GACTAAAGTGGATCCCTCAA+AGG 0.589788 1_3:+61236575 Msa0130800:intron
GAAAATATTAAGGAGGACTC+CGG 0.592371 1_3:+61235644 Msa0130800:CDS
ACCCGGAGAATAGTATGTAT+GGG 0.599191 1_3:-61235102 None:intergenic
AAGATCTCGACTTCGTATTG+TGG 0.600050 1_3:+61237686 Msa0130800:CDS
CGCAGTATTCAAAAGCGGCT+AGG 0.604992 1_3:+61235609 Msa0130800:CDS
CCACTGTGTACCTGATAGTG+TGG 0.605712 1_3:+61237635 Msa0130800:CDS
AATTGCAGGGAATTAAAACT+GGG 0.610948 1_3:-61235179 None:intergenic
CGAAGAAGAAATGGGTTCAG+CGG 0.621259 1_3:+61235202 Msa0130800:exon
AAGGCAAGATAAACTTTGTG+AGG 0.621759 1_3:-61236639 None:intergenic
CACTTAACAGCCATAAGTGA+GGG 0.624150 1_3:+61237594 Msa0130800:CDS
AAGTTTGGTTGATTTGATGG+TGG 0.632365 1_3:-61235255 None:intergenic
GCACTTAACAGCCATAAGTG+AGG 0.640429 1_3:+61237593 Msa0130800:CDS
AAGGTCCTCTCATGATTCCG+TGG 0.641693 1_3:+61235414 Msa0130800:CDS
CTCCGGGTATGCAAAGCCAA+CGG 0.645072 1_3:+61235117 Msa0130800:five_prime_UTR
GCCGCCGCAGTATTCAAAAG+CGG 0.648281 1_3:+61235604 Msa0130800:CDS
GCATGAGGTTGGGATATTGG+TGG 0.654965 1_3:+61239674 Msa0130800:three_prime_UTR
ACAATCCACGGAATCATGAG+AGG 0.656084 1_3:-61235419 None:intergenic
ACAGTAAATAGTCTTGGTGG+GGG 0.658076 1_3:-61237047 None:intergenic
CTATAATGAAAATATTAAGG+AGG 0.665956 1_3:+61235637 Msa0130800:CDS
CCCGACCACGACGATGACGA+AGG 0.668198 1_3:+61235395 Msa0130800:CDS
AAGAGGAGGAACAAGTGAAG+CGG 0.674319 1_3:-61235301 None:intergenic
GAGGCTGCCTCTTAGGAAGG+CGG 0.682208 1_3:-61236620 None:intergenic
CAGGTACATATGCTCATCTG+GGG 0.682298 1_3:+61236770 Msa0130800:intron
TCCAAATATGAATAAGCACG+AGG 0.683150 1_3:-61239413 None:intergenic
GAGGACCTTCGTCATCGTCG+TGG 0.697064 1_3:-61235400 None:intergenic
ACAAATCTAAAAGCATTGGG+AGG 0.700121 1_3:+61239344 Msa0130800:CDS
TAACTGAATATCACCTCCAG+AGG 0.701328 1_3:-61235693 None:intergenic
CTATTGGATTCTGATGCACG+GGG 0.718864 1_3:+61239485 Msa0130800:three_prime_UTR
AAAAGAAACGAAGATTCGTG+CGG 0.746406 1_3:+61235574 Msa0130800:CDS
ATTTCTTTGAGAAAACTGGG+AGG 0.747999 1_3:-61235482 None:intergenic
CCACACTATCAGGTACACAG+TGG 0.767108 1_3:-61237635 None:intergenic
TTTGACATCATGCCACACAG+AGG 0.768017 1_3:+61239553 Msa0130800:three_prime_UTR
TGATTGCGAGAGCCTCTGTG+TGG 0.771204 1_3:-61239565 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCTATAATGAAAATATTA+AGG + chr1_3:61235634-61235653 Msa0130800:CDS 10.0%
!! TTTCTATCAAATTTAATTAA+AGG + chr1_3:61235730-61235749 Msa0130800:intron 10.0%
!!! CTTATATTATTTTTCATTTT+TGG + chr1_3:61237449-61237468 Msa0130800:intron 10.0%
!! AAAAATTGAAATATTATTGT+TGG - chr1_3:61239244-61239263 None:intergenic 10.0%
!!! ATTTTATTCATAAATATGTA+AGG - chr1_3:61239802-61239821 None:intergenic 10.0%
!! TGTTAGATATTAATTAGAAT+TGG + chr1_3:61236259-61236278 Msa0130800:intron 15.0%
!! TTATCTTAGAAATAATAACA+CGG - chr1_3:61237476-61237495 None:intergenic 15.0%
!! ATTTAAGCAATAAATAATAC+AGG + chr1_3:61238187-61238206 Msa0130800:intron 15.0%
!!! AATTTTTTTTTTGGTACAAA+TGG + chr1_3:61239257-61239276 Msa0130800:intron 15.0%
!! GTAAAAAAATTAAACTAGAT+AGG + chr1_3:61239624-61239643 Msa0130800:three_prime_UTR 15.0%
!!! TATGTATTGTAATTTGTAAA+TGG + chr1_3:61239712-61239731 Msa0130800:three_prime_UTR 15.0%
!! AATTACCAAAAACAAGAAAA+AGG + chr1_3:61235547-61235566 Msa0130800:CDS 20.0%
!! ATTACCAAAAACAAGAAAAA+GGG + chr1_3:61235548-61235567 Msa0130800:CDS 20.0%
!! CTATAATGAAAATATTAAGG+AGG + chr1_3:61235637-61235656 Msa0130800:CDS 20.0%
!! TGATAGAAATTGAAAGTAAA+TGG - chr1_3:61235719-61235738 None:intergenic 20.0%
!! TGAATTGTATCAGAATTTAA+TGG + chr1_3:61235876-61235895 Msa0130800:intron 20.0%
!!! TGTGAAGAACTAATTTTTAA+AGG + chr1_3:61236069-61236088 Msa0130800:CDS 20.0%
!! TTATGAAATTTCACCAAATT+AGG + chr1_3:61236147-61236166 Msa0130800:intron 20.0%
!! GAATTGGTTAAAATTGTTTA+AGG + chr1_3:61236275-61236294 Msa0130800:intron 20.0%
!! TTAGTAGTCAATATTGTTTA+AGG - chr1_3:61236428-61236447 None:intergenic 20.0%
!! AATATTAATAAAGCTCAAAG+TGG - chr1_3:61236856-61236875 None:intergenic 20.0%
!!! ATACAATTTTCTGTCTTTTT+AGG + chr1_3:61236935-61236954 Msa0130800:intron 20.0%
!!! TCTTTTGAAAAATTAGATGA+CGG - chr1_3:61237259-61237278 None:intergenic 20.0%
!! TAACGAAGTATATGTATTAA+AGG - chr1_3:61238422-61238441 None:intergenic 20.0%
!!! AAATCAAGCTTAAAGATTTT+TGG + chr1_3:61238727-61238746 Msa0130800:intron 20.0%
!! AAGAAAAATAAGAGAATTTG+TGG - chr1_3:61238934-61238953 None:intergenic 20.0%
!!! ATTTGTTGTACTTTTATTTC+AGG + chr1_3:61239294-61239313 Msa0130800:intron 20.0%
!!! AAAGCTAATTCTTAATTTGT+TGG + chr1_3:61239377-61239396 Msa0130800:exon 20.0%
!!! CTACATATTTTAGAAGAATT+GGG + chr1_3:61239602-61239621 Msa0130800:three_prime_UTR 20.0%
! AAAAAGATAGTATTACTGAG+AGG + chr1_3:61235076-61235095 Msa0130800:five_prime_UTR 25.0%
! AAAAGATAGTATTACTGAGA+GGG + chr1_3:61235077-61235096 Msa0130800:five_prime_UTR 25.0%
!!! CTTTTCTGATTTTTTTGTAC+CGG - chr1_3:61235522-61235541 None:intergenic 25.0%
!!! AGAACTAATTTTTAAAGGCA+AGG + chr1_3:61236074-61236093 Msa0130800:CDS 25.0%
! TTAAGTGATCAATGAAATCA+TGG - chr1_3:61236205-61236224 None:intergenic 25.0%
! TGATTTCATTGATCACTTAA+TGG + chr1_3:61236205-61236224 Msa0130800:intron 25.0%
! ATCTAACAGCTTAGATAAAA+TGG - chr1_3:61236247-61236266 None:intergenic 25.0%
! CGTTATATTAGTTATACCTT+AGG + chr1_3:61236331-61236350 Msa0130800:intron 25.0%
! TACCTTAGGATTCTTATATA+AGG + chr1_3:61236345-61236364 Msa0130800:intron 25.0%
!!! CTTCTAGAAACTAATGTTTT+TGG + chr1_3:61236522-61236541 Msa0130800:intron 25.0%
!! TTATGAGAAAAACACTTTTG+TGG + chr1_3:61236546-61236565 Msa0130800:intron 25.0%
! ACATAGATATTATCCTTTGA+GGG - chr1_3:61236591-61236610 None:intergenic 25.0%
! AAGGATAATATCTATGTCAA+TGG + chr1_3:61236594-61236613 Msa0130800:CDS 25.0%
!! TATCATTTTACATACCCTTT+TGG - chr1_3:61236672-61236691 None:intergenic 25.0%
! CTATGCAAATGAATTCAAAA+GGG + chr1_3:61236699-61236718 Msa0130800:intron 25.0%
! GGAGAGAACATTATTATAAA+TGG - chr1_3:61236979-61236998 None:intergenic 25.0%
!!! ATAAAATTGTTTTCAGGTGA+TGG - chr1_3:61237000-61237019 None:intergenic 25.0%
!! CTGGAAATAAAATTGTTTTC+AGG - chr1_3:61237006-61237025 None:intergenic 25.0%
!!! CTGAAAACAATTTTATTTCC+AGG + chr1_3:61237004-61237023 Msa0130800:intron 25.0%
! TTACTTATTGTGACTAATGA+TGG + chr1_3:61237098-61237117 Msa0130800:CDS 25.0%
!! TTTTTGCTAGGACTTTATAA+AGG + chr1_3:61237380-61237399 Msa0130800:intron 25.0%
! GTAACTTACATTATTACGTT+TGG + chr1_3:61237426-61237445 Msa0130800:intron 25.0%
!! TAATCCATACTTAGTGTTTT+AGG + chr1_3:61237850-61237869 Msa0130800:intron 25.0%
! TATTCCTAAAACACTAAGTA+TGG - chr1_3:61237857-61237876 None:intergenic 25.0%
!!! TACTTAGTGTTTTAGGAATA+TGG + chr1_3:61237857-61237876 Msa0130800:intron 25.0%
!!! GGTCAGAGTTTTTTTTAAAA+AGG - chr1_3:61238124-61238143 None:intergenic 25.0%
!! ATCTTGATAATTCAGATACA+AGG - chr1_3:61238223-61238242 None:intergenic 25.0%
! TTGTATCTGAATTATCAAGA+TGG + chr1_3:61238222-61238241 Msa0130800:intron 25.0%
! AATGCTTGCTTGATTTAATT+TGG + chr1_3:61238325-61238344 Msa0130800:intron 25.0%
!!! GATTTAATTTGGATTCTCAT+AGG + chr1_3:61238336-61238355 Msa0130800:intron 25.0%
!!! ACATGGAGAGTATTATATTA+TGG - chr1_3:61238630-61238649 None:intergenic 25.0%
!! GATGTATTTTACATAAAGCA+AGG - chr1_3:61238703-61238722 None:intergenic 25.0%
! TGATGGCAACATATAATAAA+GGG + chr1_3:61238815-61238834 Msa0130800:intron 25.0%
! TATAGTCACTCATTTATCTT+GGG - chr1_3:61239043-61239062 None:intergenic 25.0%
!!! GCTACATATTTTAGAAGAAT+TGG + chr1_3:61239601-61239620 Msa0130800:three_prime_UTR 25.0%
! AAATTAAACTAGATAGGAAG+CGG + chr1_3:61239630-61239649 Msa0130800:three_prime_UTR 25.0%
!! TAACCTAATGATGTTAGTTT+AGG + chr1_3:61239751-61239770 Msa0130800:three_prime_UTR 25.0%
AATTGCAGGGAATTAAAACT+GGG - chr1_3:61235182-61235201 None:intergenic 30.0%
!! AGTAAGTTTGGTTGATTTGA+TGG - chr1_3:61235261-61235280 None:intergenic 30.0%
AGAGAAAGAGATGTTGAATT+TGG - chr1_3:61235327-61235346 None:intergenic 30.0%
CGGTACAAAAAAATCAGAAA+AGG + chr1_3:61235520-61235539 Msa0130800:CDS 30.0%
!!! TTCACCCTTTTTCTTGTTTT+TGG - chr1_3:61235555-61235574 None:intergenic 30.0%
GGTGAAATTTCATAATTGCA+GGG - chr1_3:61236142-61236161 None:intergenic 30.0%
TGGTGAAATTTCATAATTGC+AGG - chr1_3:61236143-61236162 None:intergenic 30.0%
TGCTGCTAAAAAACCTAATT+TGG - chr1_3:61236163-61236182 None:intergenic 30.0%
CACCTTATATAAGAATCCTA+AGG - chr1_3:61236350-61236369 None:intergenic 30.0%
!! GAATGAACAAGTTGATATGA+TGG - chr1_3:61236382-61236401 None:intergenic 30.0%
GACATAGATATTATCCTTTG+AGG - chr1_3:61236592-61236611 None:intergenic 30.0%
! CCTTTTGAATTCATTTGCAT+AGG - chr1_3:61236701-61236720 None:intergenic 30.0%
CCTATGCAAATGAATTCAAA+AGG + chr1_3:61236698-61236717 Msa0130800:intron 30.0%
ATGTAATTGCATCACTTATC+AGG - chr1_3:61236745-61236764 None:intergenic 30.0%
! TGATGCAATTACATTTTCAC+AGG + chr1_3:61236751-61236770 Msa0130800:intron 30.0%
!!! TTGATGATTTTTTGAGCAGT+TGG + chr1_3:61236823-61236842 Msa0130800:CDS 30.0%
!!! TGATGATTTTTTGAGCAGTT+GGG + chr1_3:61236824-61236843 Msa0130800:CDS 30.0%
CCAAACTAATGAAAAAGTTC+AGG - chr1_3:61237315-61237334 None:intergenic 30.0%
!!! CCTGAACTTTTTCATTAGTT+TGG + chr1_3:61237312-61237331 Msa0130800:intron 30.0%
TAGAAAATGAGAGAAATCAC+AGG - chr1_3:61237514-61237533 None:intergenic 30.0%
AGATACATTGCAACAGTTAA+TGG + chr1_3:61237555-61237574 Msa0130800:intron 30.0%
! TTAATGGTCTAGTTCATAAG+AGG + chr1_3:61237571-61237590 Msa0130800:CDS 30.0%
AAAAATTCACAACCAGTGTT+GGG - chr1_3:61237752-61237771 None:intergenic 30.0%
TAAAAATTCACAACCAGTGT+TGG - chr1_3:61237753-61237772 None:intergenic 30.0%
AGTCAATAACTTCATGCTTA+CGG - chr1_3:61237887-61237906 None:intergenic 30.0%
CATAGATATCTACATACATG+TGG - chr1_3:61237954-61237973 None:intergenic 30.0%
!! AAGAGTTCTAGAACAAAATG+GGG - chr1_3:61238078-61238097 None:intergenic 30.0%
!! CAAGAGTTCTAGAACAAAAT+GGG - chr1_3:61238079-61238098 None:intergenic 30.0%
!! TCAAGAGTTCTAGAACAAAA+TGG - chr1_3:61238080-61238099 None:intergenic 30.0%
TTCCATGTTTCACATTTCTT+AGG + chr1_3:61238542-61238561 Msa0130800:intron 30.0%
!!! AAGCTTAAAGATTTTTGGTG+TGG + chr1_3:61238732-61238751 Msa0130800:intron 30.0%
GTGATGGCAACATATAATAA+AGG + chr1_3:61238814-61238833 Msa0130800:intron 30.0%
GATGGCAACATATAATAAAG+GGG + chr1_3:61238816-61238835 Msa0130800:intron 30.0%
AGGTATCTTATCATTGGATT+CGG + chr1_3:61238856-61238875 Msa0130800:intron 30.0%
AGATCTATAGACATCATACA+AGG - chr1_3:61238976-61238995 None:intergenic 30.0%
ATAGTCACTCATTTATCTTG+GGG - chr1_3:61239042-61239061 None:intergenic 30.0%
GTATAGTCACTCATTTATCT+TGG - chr1_3:61239044-61239063 None:intergenic 30.0%
! AAAAGCACAAAATTTACCCA+AGG - chr1_3:61239154-61239173 None:intergenic 30.0%
!! TTGTACTTTTATTTCAGGCT+AGG + chr1_3:61239299-61239318 Msa0130800:intron 30.0%
!! TGTACTTTTATTTCAGGCTA+GGG + chr1_3:61239300-61239319 Msa0130800:intron 30.0%
TAAAGCTATCATCAATGAGT+TGG + chr1_3:61239441-61239460 Msa0130800:three_prime_UTR 30.0%
TCCAATAGCTCAAATCAAAA+AGG - chr1_3:61239473-61239492 None:intergenic 30.0%
! TTTTCATATGATCATGCATG+AGG + chr1_3:61239659-61239678 Msa0130800:three_prime_UTR 30.0%
CTAACATCATTAGGTTATTC+AGG - chr1_3:61239748-61239767 None:intergenic 30.0%
TTGCCTAAACTAACATCATT+AGG - chr1_3:61239757-61239776 None:intergenic 30.0%
AACCCATACATACTATTCTC+CGG + chr1_3:61235100-61235119 Msa0130800:five_prime_UTR 35.0%
TTCGTTTCTATCTTATCCGT+TGG - chr1_3:61235136-61235155 None:intergenic 35.0%
GAATTGCAGGGAATTAAAAC+TGG - chr1_3:61235183-61235202 None:intergenic 35.0%
CATTTCTTCTTCGAATTGCA+GGG - chr1_3:61235195-61235214 None:intergenic 35.0%
CTGCAATTCGAAGAAGAAAT+GGG + chr1_3:61235194-61235213 Msa0130800:exon 35.0%
!! AAGTTTGGTTGATTTGATGG+TGG - chr1_3:61235258-61235277 None:intergenic 35.0%
AGAGATGTTGAATTTGGAAG+AGG - chr1_3:61235321-61235340 None:intergenic 35.0%
! ATTTCTTTGAGAAAACTGGG+AGG - chr1_3:61235485-61235504 None:intergenic 35.0%
! TCCCAGTTTTCTCAAAGAAA+TGG + chr1_3:61235484-61235503 Msa0130800:CDS 35.0%
! GCCATTTCTTTGAGAAAACT+GGG - chr1_3:61235488-61235507 None:intergenic 35.0%
! AGCCATTTCTTTGAGAAAAC+TGG - chr1_3:61235489-61235508 None:intergenic 35.0%
AAAAGAAACGAAGATTCGTG+CGG + chr1_3:61235574-61235593 Msa0130800:CDS 35.0%
GAAAATATTAAGGAGGACTC+CGG + chr1_3:61235644-61235663 Msa0130800:CDS 35.0%
!! GTTTAGCTTGAAAAGTAGAG+AGG + chr1_3:61235936-61235955 Msa0130800:intron 35.0%
AAAGGCAAGGTTACTGTTAA+CGG + chr1_3:61236087-61236106 Msa0130800:CDS 35.0%
AAGGCAAGATAAACTTTGTG+AGG - chr1_3:61236642-61236661 None:intergenic 35.0%
TTGCCTTGAACAAACCAAAA+GGG + chr1_3:61236655-61236674 Msa0130800:CDS 35.0%
!!! ATACCCTTTTGGTTTGTTCA+AGG - chr1_3:61236661-61236680 None:intergenic 35.0%
ATTGCATCACTTATCAGGAT+AGG - chr1_3:61236740-61236759 None:intergenic 35.0%
! TACAGTAAATAGTCTTGGTG+GGG - chr1_3:61237051-61237070 None:intergenic 35.0%
! CTACAGTAAATAGTCTTGGT+GGG - chr1_3:61237052-61237071 None:intergenic 35.0%
CACCAAGACTATTTACTGTA+GGG + chr1_3:61237051-61237070 Msa0130800:CDS 35.0%
TTGTGACTAATGATGGTATG+TGG + chr1_3:61237105-61237124 Msa0130800:intron 35.0%
TATCTCTGTTGAGTGAATAG+TGG + chr1_3:61237147-61237166 Msa0130800:intron 35.0%
TGGATTTGTATCGCATGTAT+AGG + chr1_3:61237332-61237351 Msa0130800:intron 35.0%
! AATTGTTGTTCCCTCACTTA+TGG - chr1_3:61237607-61237626 None:intergenic 35.0%
TGTTTCATGTGACACTACTT+TGG + chr1_3:61237908-61237927 Msa0130800:intron 35.0%
! TTTTCTTTGACTGCAGTCAT+AGG + chr1_3:61237988-61238007 Msa0130800:intron 35.0%
TTCAGATACAAGGATGTCAA+TGG - chr1_3:61238213-61238232 None:intergenic 35.0%
! TAGAACTTTGGGCATTTTGA+GGG - chr1_3:61238450-61238469 None:intergenic 35.0%
! TTAGAACTTTGGGCATTTTG+AGG - chr1_3:61238451-61238470 None:intergenic 35.0%
TGCTCAAGCATTAGAACTTT+GGG - chr1_3:61238461-61238480 None:intergenic 35.0%
ATGCTCAAGCATTAGAACTT+TGG - chr1_3:61238462-61238481 None:intergenic 35.0%
AAAACTGTGAAAATGCCCAA+AGG + chr1_3:61238501-61238520 Msa0130800:intron 35.0%
TTGTCTAGTATGAGACCTTT+GGG - chr1_3:61238519-61238538 None:intergenic 35.0%
ATTGTCTAGTATGAGACCTT+TGG - chr1_3:61238520-61238539 None:intergenic 35.0%
CTCCTAAGAAATGTGAAACA+TGG - chr1_3:61238547-61238566 None:intergenic 35.0%
ATAGACACTGTCAAACAACA+TGG - chr1_3:61238647-61238666 None:intergenic 35.0%
!!! AGATTTTTGGTGTGGCATAT+AGG + chr1_3:61238740-61238759 Msa0130800:intron 35.0%
GGAAATTTGACATGATGTGA+TGG + chr1_3:61238798-61238817 Msa0130800:intron 35.0%
GGGATTAAGATTTAAGAGTG+AGG + chr1_3:61238836-61238855 Msa0130800:intron 35.0%
! AGAGTGAGGTATCTTATCAT+TGG + chr1_3:61238850-61238869 Msa0130800:intron 35.0%
GGTATCTTATCATTGGATTC+GGG + chr1_3:61238857-61238876 Msa0130800:intron 35.0%
GTATCTTATCATTGGATTCG+GGG + chr1_3:61238858-61238877 Msa0130800:intron 35.0%
TATCTTATCATTGGATTCGG+GGG + chr1_3:61238859-61238878 Msa0130800:intron 35.0%
! TCCGACAAATCTAAAAGCAT+TGG + chr1_3:61239340-61239359 Msa0130800:CDS 35.0%
! CCCAATGCTTTTAGATTTGT+CGG - chr1_3:61239344-61239363 None:intergenic 35.0%
!! CCGACAAATCTAAAAGCATT+GGG + chr1_3:61239341-61239360 Msa0130800:CDS 35.0%
!! ACAAATCTAAAAGCATTGGG+AGG + chr1_3:61239344-61239363 Msa0130800:CDS 35.0%
TCCTCGTGCTTATTCATATT+TGG + chr1_3:61239412-61239431 Msa0130800:three_prime_UTR 35.0%
TCCAAATATGAATAAGCACG+AGG - chr1_3:61239416-61239435 None:intergenic 35.0%
! AGCTCAAATCAAAAAGGCAT+TGG - chr1_3:61239467-61239486 None:intergenic 35.0%
!!! GCCTTTTTGATTTGAGCTAT+TGG + chr1_3:61239469-61239488 Msa0130800:three_prime_UTR 35.0%
ATATGATCATGCATGAGGTT+GGG + chr1_3:61239664-61239683 Msa0130800:three_prime_UTR 35.0%
ACCCATACATACTATTCTCC+GGG + chr1_3:61235101-61235120 Msa0130800:five_prime_UTR 40.0%
ACCCGGAGAATAGTATGTAT+GGG - chr1_3:61235105-61235124 None:intergenic 40.0%
TACCCGGAGAATAGTATGTA+TGG - chr1_3:61235106-61235125 None:intergenic 40.0%
CCATTTCTTCTTCGAATTGC+AGG - chr1_3:61235196-61235215 None:intergenic 40.0%
CCTGCAATTCGAAGAAGAAA+TGG + chr1_3:61235193-61235212 Msa0130800:exon 40.0%
GATGTTGAATTTGGAAGAGG+AGG - chr1_3:61235318-61235337 None:intergenic 40.0%
GAAATGGCTAATGCTCAAAC+CGG + chr1_3:61235500-61235519 Msa0130800:CDS 40.0%
TAACTGAATATCACCTCCAG+AGG - chr1_3:61235696-61235715 None:intergenic 40.0%
TGTTGTGTCAATGTCGTGTA+TGG + chr1_3:61235775-61235794 Msa0130800:intron 40.0%
ACACGTTTAGTCCAGTAGTT+CGG - chr1_3:61235996-61236015 None:intergenic 40.0%
TTCTGCTTTCAGTTGCATCT+AGG + chr1_3:61236040-61236059 Msa0130800:intron 40.0%
TTCTGTCTGTAATACACCTC+AGG + chr1_3:61236110-61236129 Msa0130800:CDS 40.0%
!! ACAAGTTGATATGATGGCGT+AGG - chr1_3:61236376-61236395 None:intergenic 40.0%
TTGTGGTGTGTAGACTAAAG+TGG + chr1_3:61236563-61236582 Msa0130800:intron 40.0%
CTTGCCTTGAACAAACCAAA+AGG + chr1_3:61236654-61236673 Msa0130800:CDS 40.0%
ACAGGTACATATGCTCATCT+GGG + chr1_3:61236769-61236788 Msa0130800:intron 40.0%
!! TTCCAGGATAAAAAGCATCC+AGG + chr1_3:61237020-61237039 Msa0130800:intron 40.0%
! ACAGTAAATAGTCTTGGTGG+GGG - chr1_3:61237050-61237069 None:intergenic 40.0%
! CCTACAGTAAATAGTCTTGG+TGG - chr1_3:61237053-61237072 None:intergenic 40.0%
CCACCAAGACTATTTACTGT+AGG + chr1_3:61237050-61237069 Msa0130800:CDS 40.0%
CCTAGCAAAAATCTTGTGAG+AGG - chr1_3:61237371-61237390 None:intergenic 40.0%
! CCTCTCACAAGATTTTTGCT+AGG + chr1_3:61237368-61237387 Msa0130800:intron 40.0%
AATGAGAGAAATCACAGGAG+TGG - chr1_3:61237509-61237528 None:intergenic 40.0%
CACTTAACAGCCATAAGTGA+GGG + chr1_3:61237594-61237613 Msa0130800:CDS 40.0%
AAGTGAGGGAACAACAATTG+AGG + chr1_3:61237608-61237627 Msa0130800:CDS 40.0%
AGTGAGGGAACAACAATTGA+GGG + chr1_3:61237609-61237628 Msa0130800:CDS 40.0%
AGTCGAGATCTTTGTGTATC+CGG - chr1_3:61237678-61237697 None:intergenic 40.0%
AAGATCTCGACTTCGTATTG+TGG + chr1_3:61237686-61237705 Msa0130800:CDS 40.0%
TCTGACCGTTAACGTGAAAA+TGG + chr1_3:61238137-61238156 Msa0130800:intron 40.0%
CTGACCGTTAACGTGAAAAT+GGG + chr1_3:61238138-61238157 Msa0130800:intron 40.0%
! CATGCCCATTTTCACGTTAA+CGG - chr1_3:61238145-61238164 None:intergenic 40.0%
GGCATGTCGTATGGTAAAAT+TGG + chr1_3:61238159-61238178 Msa0130800:intron 40.0%
GGATTCTCATAGGTTCATGA+TGG + chr1_3:61238346-61238365 Msa0130800:intron 40.0%
! TCTCATAGGTTCATGATGGA+AGG + chr1_3:61238350-61238369 Msa0130800:intron 40.0%
!! CGTGAACTTGTTAAAAGTGC+TGG + chr1_3:61238385-61238404 Msa0130800:CDS 40.0%
!! TGTTAAAAGTGCTGGACTTG+AGG + chr1_3:61238393-61238412 Msa0130800:CDS 40.0%
GCGCATTAGAGAGTTAGAAA+GGG + chr1_3:61238776-61238795 Msa0130800:intron 40.0%
CGCATTAGAGAGTTAGAAAG+GGG + chr1_3:61238777-61238796 Msa0130800:intron 40.0%
!!! TTTTGGGTTTTGGCATTAGG+AGG + chr1_3:61238883-61238902 Msa0130800:intron 40.0%
! GTGGATTACAGTATCACAGA+GGG - chr1_3:61238915-61238934 None:intergenic 40.0%
! TGTGGATTACAGTATCACAG+AGG - chr1_3:61238916-61238935 None:intergenic 40.0%
TCATTAAAGCGAGTTCGCAT+CGG + chr1_3:61239107-61239126 Msa0130800:CDS 40.0%
AAAATTTACCCAAGGTCTGG+TGG - chr1_3:61239146-61239165 None:intergenic 40.0%
CACAAAATTTACCCAAGGTC+TGG - chr1_3:61239149-61239168 None:intergenic 40.0%
! TCCTTACTCCTTAGTTCTCA+AGG + chr1_3:61239179-61239198 Msa0130800:intron 40.0%
! CCTTACTCCTTAGTTCTCAA+GGG + chr1_3:61239180-61239199 Msa0130800:intron 40.0%
AAAGACTCCCTTGAGAACTA+AGG - chr1_3:61239190-61239209 None:intergenic 40.0%
AGCTATTGGATTCTGATGCA+CGG + chr1_3:61239483-61239502 Msa0130800:three_prime_UTR 40.0%
!! CAAACGCTCTAGAAAGTTTG+TGG - chr1_3:61239537-61239556 None:intergenic 40.0%
CATATGATCATGCATGAGGT+TGG + chr1_3:61239663-61239682 Msa0130800:three_prime_UTR 40.0%
! CGAAGAAGAAATGGGTTCAG+CGG + chr1_3:61235202-61235221 Msa0130800:exon 45.0%
GCGGAAGGTAGAAGTAAGTT+TGG - chr1_3:61235273-61235292 None:intergenic 45.0%
AAGAGGAGGAACAAGTGAAG+CGG - chr1_3:61235304-61235323 None:intergenic 45.0%
! GGCTTAGGTTTGGGATTAGA+CGG - chr1_3:61235350-61235369 None:intergenic 45.0%
ACAATCCACGGAATCATGAG+AGG - chr1_3:61235422-61235441 None:intergenic 45.0%
! ATGATTCCGTGGATTGTTCG+CGG + chr1_3:61235425-61235444 Msa0130800:CDS 45.0%
! TCTTTGAGAAAACTGGGAGG+AGG - chr1_3:61235482-61235501 None:intergenic 45.0%
!!! CTAGCCGCTTTTGAATACTG+CGG - chr1_3:61235611-61235630 None:intergenic 45.0%
AACCTTACTGAGACGAGTAC+CGG - chr1_3:61235666-61235685 None:intergenic 45.0%
GATGCAACTGAAAGCAGAAG+AGG - chr1_3:61236039-61236058 None:intergenic 45.0%
AATTGCAGGGAACAAACCTG+AGG - chr1_3:61236129-61236148 None:intergenic 45.0%
GACTAAAGTGGATCCCTCAA+AGG + chr1_3:61236575-61236594 Msa0130800:intron 45.0%
CACAGGTACATATGCTCATC+TGG + chr1_3:61236768-61236787 Msa0130800:intron 45.0%
CAGGTACATATGCTCATCTG+GGG + chr1_3:61236770-61236789 Msa0130800:intron 45.0%
CATATGCTCATCTGGGGAAA+AGG + chr1_3:61236776-61236795 Msa0130800:CDS 45.0%
!! CTCCTGGATGCTTTTTATCC+TGG - chr1_3:61237025-61237044 None:intergenic 45.0%
CGCCCTACAGTAAATAGTCT+TGG - chr1_3:61237056-61237075 None:intergenic 45.0%
GCCTTGATGTTGCAACTACT+GGG + chr1_3:61237075-61237094 Msa0130800:CDS 45.0%
ACCCAGTAGTTGCAACATCA+AGG - chr1_3:61237079-61237098 None:intergenic 45.0%
ATCCAATGCTTCTTGTTCGC+AGG + chr1_3:61237208-61237227 Msa0130800:intron 45.0%
GCACTTAACAGCCATAAGTG+AGG + chr1_3:61237593-61237612 Msa0130800:CDS 45.0%
GGAAGTAACTCCACACTATC+AGG - chr1_3:61237648-61237667 None:intergenic 45.0%
TCAACTATGCTACCCAACAC+TGG + chr1_3:61237737-61237756 Msa0130800:intron 45.0%
GTGAAAATGGGCATGTCGTA+TGG + chr1_3:61238150-61238169 Msa0130800:intron 45.0%
GGCGCATTAGAGAGTTAGAA+AGG + chr1_3:61238775-61238794 Msa0130800:intron 45.0%
!!! GGCTTTTGGGTTTTGGCATT+AGG + chr1_3:61238880-61238899 Msa0130800:intron 45.0%
GTCACTCATTTATCTTGGGG+AGG - chr1_3:61239039-61239058 None:intergenic 45.0%
TTTAGACTTCCACCAGACCT+TGG + chr1_3:61239134-61239153 Msa0130800:CDS 45.0%
TTAGACTTCCACCAGACCTT+GGG + chr1_3:61239135-61239154 Msa0130800:CDS 45.0%
CCCTTGAGAACTAAGGAGTA+AGG - chr1_3:61239183-61239202 None:intergenic 45.0%
GCTATTGGATTCTGATGCAC+GGG + chr1_3:61239484-61239503 Msa0130800:three_prime_UTR 45.0%
CTATTGGATTCTGATGCACG+GGG + chr1_3:61239485-61239504 Msa0130800:three_prime_UTR 45.0%
TTTGACATCATGCCACACAG+AGG + chr1_3:61239553-61239572 Msa0130800:three_prime_UTR 45.0%
CATGCATGAGGTTGGGATAT+TGG + chr1_3:61239671-61239690 Msa0130800:three_prime_UTR 45.0%
!!! TAATATTTCAATTTTTTTTT+TGG + chr1_3:61239248-61239267 Msa0130800:intron 5.0%
!! ATCCGTTGGCTTTGCATACC+CGG - chr1_3:61235122-61235141 None:intergenic 50.0%
! AATGGGTTCAGCGGCAACAA+TGG + chr1_3:61235211-61235230 Msa0130800:exon 50.0%
AGAGGAGGAACAAGTGAAGC+GGG - chr1_3:61235303-61235322 None:intergenic 50.0%
!!! TTGAGTTTTGGGCTGAGGAG+CGG - chr1_3:61235372-61235391 None:intergenic 50.0%
!! TGGTCGGGGGTTTGAGTTTT+GGG - chr1_3:61235383-61235402 None:intergenic 50.0%
AAGGTCCTCTCATGATTCCG+TGG + chr1_3:61235414-61235433 Msa0130800:CDS 50.0%
CGCAGTATTCAAAAGCGGCT+AGG + chr1_3:61235609-61235628 Msa0130800:CDS 50.0%
AGTAAGGTTCTTGCAGCCTC+TGG + chr1_3:61235677-61235696 Msa0130800:CDS 50.0%
TGCCTCATGATCCGAACTAC+TGG + chr1_3:61235982-61236001 Msa0130800:intron 50.0%
GTCCAGTAGTTCGGATCATG+AGG - chr1_3:61235987-61236006 None:intergenic 50.0%
ACTTTGTGAGGCTGCCTCTT+AGG - chr1_3:61236630-61236649 None:intergenic 50.0%
CGCCTTGATGTTGCAACTAC+TGG + chr1_3:61237074-61237093 Msa0130800:CDS 50.0%
! CTCCTGCGAACAAGAAGCAT+TGG - chr1_3:61237213-61237232 None:intergenic 50.0%
CCACACTATCAGGTACACAG+TGG - chr1_3:61237638-61237657 None:intergenic 50.0%
! CCACTGTGTACCTGATAGTG+TGG + chr1_3:61237635-61237654 Msa0130800:CDS 50.0%
GGAGTTACTTCCACGTATGC+CGG + chr1_3:61237656-61237675 Msa0130800:CDS 50.0%
CTTTGTGTATCCGGCATACG+TGG - chr1_3:61237669-61237688 None:intergenic 50.0%
GCATATAGGAAGCCCTGAGT+GGG + chr1_3:61238754-61238773 Msa0130800:intron 50.0%
! TCATTGGATTCGGGGGCTTT+TGG + chr1_3:61238866-61238885 Msa0130800:intron 50.0%
! CATTGGATTCGGGGGCTTTT+GGG + chr1_3:61238867-61238886 Msa0130800:intron 50.0%
!!! ATTCGGGGGCTTTTGGGTTT+TGG + chr1_3:61238873-61238892 Msa0130800:intron 50.0%
TTAAAGCGAGTTCGCATCGG+TGG + chr1_3:61239110-61239129 Msa0130800:CDS 50.0%
! TGATGCACGGGGCATTACTT+GGG + chr1_3:61239496-61239515 Msa0130800:three_prime_UTR 50.0%
GCATGAGGTTGGGATATTGG+TGG + chr1_3:61239674-61239693 Msa0130800:three_prime_UTR 50.0%
CTCCGGGTATGCAAAGCCAA+CGG + chr1_3:61235117-61235136 Msa0130800:five_prime_UTR 55.0%
AGGAGGAACAAGTGAAGCGG+GGG - chr1_3:61235301-61235320 None:intergenic 55.0%
GAGGAGGAACAAGTGAAGCG+GGG - chr1_3:61235302-61235321 None:intergenic 55.0%
! TGAGGAGCGGGCTTAGGTTT+GGG - chr1_3:61235359-61235378 None:intergenic 55.0%
!!! TGAGTTTTGGGCTGAGGAGC+GGG - chr1_3:61235371-61235390 None:intergenic 55.0%
!!! GGGGTTTGAGTTTTGGGCTG+AGG - chr1_3:61235377-61235396 None:intergenic 55.0%
!! GTGGTCGGGGGTTTGAGTTT+TGG - chr1_3:61235384-61235403 None:intergenic 55.0%
ACCTTCGTCATCGTCGTGGT+CGG - chr1_3:61235399-61235418 None:intergenic 55.0%
TCTTCGCCGCGAACAATCCA+CGG - chr1_3:61235434-61235453 None:intergenic 55.0%
TGGATTGTTCGCGGCGAAGA+TGG + chr1_3:61235434-61235453 Msa0130800:CDS 55.0%
GCCGCCGCAGTATTCAAAAG+CGG + chr1_3:61235604-61235623 Msa0130800:CDS 55.0%
!!! GCCGCTTTTGAATACTGCGG+CGG - chr1_3:61235608-61235627 None:intergenic 55.0%
CTCCGGTACTCGTCTCAGTA+AGG + chr1_3:61235661-61235680 Msa0130800:CDS 55.0%
AAGGTTCTTGCAGCCTCTGG+AGG + chr1_3:61235680-61235699 Msa0130800:CDS 55.0%
ATGGAAGCCGCCTTCCTAAG+AGG + chr1_3:61236613-61236632 Msa0130800:CDS 55.0%
TGTGAGGCTGCCTCTTAGGA+AGG - chr1_3:61236626-61236645 None:intergenic 55.0%
GGCATATAGGAAGCCCTGAG+TGG + chr1_3:61238753-61238772 Msa0130800:intron 55.0%
CTCTCTAATGCGCCCACTCA+GGG - chr1_3:61238769-61238788 None:intergenic 55.0%
ACTCTCTAATGCGCCCACTC+AGG - chr1_3:61238770-61238789 None:intergenic 55.0%
! CTGATGCACGGGGCATTACT+TGG + chr1_3:61239495-61239514 Msa0130800:three_prime_UTR 55.0%
TGATTGCGAGAGCCTCTGTG+TGG - chr1_3:61239568-61239587 None:intergenic 55.0%
AAGTGAAGCGGGGGAGAGTG+CGG - chr1_3:61235292-61235311 None:intergenic 60.0%
! CTGAGGAGCGGGCTTAGGTT+TGG - chr1_3:61235360-61235379 None:intergenic 60.0%
TTCGTCATCGTCGTGGTCGG+GGG - chr1_3:61235396-61235415 None:intergenic 60.0%
CTTCGTCATCGTCGTGGTCG+GGG - chr1_3:61235397-61235416 None:intergenic 60.0%
CCTTCGTCATCGTCGTGGTC+GGG - chr1_3:61235398-61235417 None:intergenic 60.0%
GAGGACCTTCGTCATCGTCG+TGG - chr1_3:61235403-61235422 None:intergenic 60.0%
GAGGCTGCCTCTTAGGAAGG+CGG - chr1_3:61236623-61236642 None:intergenic 60.0%
!! AGTCTTGGTGGGGGTACTCC+TGG - chr1_3:61237041-61237060 None:intergenic 60.0%
! TTGGGCTGAGGAGCGGGCTT+AGG - chr1_3:61235365-61235384 None:intergenic 65.0%
CCCGACCACGACGATGACGA+AGG + chr1_3:61235395-61235414 Msa0130800:CDS 65.0%
! GAAGCGGGGGAGAGTGCGGA+AGG - chr1_3:61235288-61235307 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 61235067 61239840 61235067 ID=Msa0130800;Name=Msa0130800
chr1_3 mRNA 61235067 61239840 61235067 ID=Msa0130800-mRNA-1;Parent=Msa0130800;Name=Msa0130800-mRNA-1;_AED=0.16;_eAED=0.16;_QI=145|1|1|1|1|1|10|449|408
chr1_3 exon 61235067 61235701 61235067 ID=Msa0130800-mRNA-1:exon:20259;Parent=Msa0130800-mRNA-1
chr1_3 exon 61236052 61236131 61236052 ID=Msa0130800-mRNA-1:exon:20260;Parent=Msa0130800-mRNA-1
chr1_3 exon 61236576 61236676 61236576 ID=Msa0130800-mRNA-1:exon:20261;Parent=Msa0130800-mRNA-1
chr1_3 exon 61236773 61236845 61236773 ID=Msa0130800-mRNA-1:exon:20262;Parent=Msa0130800-mRNA-1
chr1_3 exon 61237026 61237119 61237026 ID=Msa0130800-mRNA-1:exon:20263;Parent=Msa0130800-mRNA-1
chr1_3 exon 61237230 61237278 61237230 ID=Msa0130800-mRNA-1:exon:20264;Parent=Msa0130800-mRNA-1
chr1_3 exon 61237557 61237707 61237557 ID=Msa0130800-mRNA-1:exon:20265;Parent=Msa0130800-mRNA-1
chr1_3 exon 61238358 61238414 61238358 ID=Msa0130800-mRNA-1:exon:20266;Parent=Msa0130800-mRNA-1
chr1_3 exon 61239101 61239156 61239101 ID=Msa0130800-mRNA-1:exon:20267;Parent=Msa0130800-mRNA-1
chr1_3 exon 61239316 61239840 61239316 ID=Msa0130800-mRNA-1:exon:20268;Parent=Msa0130800-mRNA-1
chr1_3 five_prime_UTR 61235067 61235211 61235067 ID=Msa0130800-mRNA-1:five_prime_utr;Parent=Msa0130800-mRNA-1
chr1_3 CDS 61235212 61235701 61235212 ID=Msa0130800-mRNA-1:cds;Parent=Msa0130800-mRNA-1
chr1_3 CDS 61236052 61236131 61236052 ID=Msa0130800-mRNA-1:cds;Parent=Msa0130800-mRNA-1
chr1_3 CDS 61236576 61236676 61236576 ID=Msa0130800-mRNA-1:cds;Parent=Msa0130800-mRNA-1
chr1_3 CDS 61236773 61236845 61236773 ID=Msa0130800-mRNA-1:cds;Parent=Msa0130800-mRNA-1
chr1_3 CDS 61237026 61237119 61237026 ID=Msa0130800-mRNA-1:cds;Parent=Msa0130800-mRNA-1
chr1_3 CDS 61237230 61237278 61237230 ID=Msa0130800-mRNA-1:cds;Parent=Msa0130800-mRNA-1
chr1_3 CDS 61237557 61237707 61237557 ID=Msa0130800-mRNA-1:cds;Parent=Msa0130800-mRNA-1
chr1_3 CDS 61238358 61238414 61238358 ID=Msa0130800-mRNA-1:cds;Parent=Msa0130800-mRNA-1
chr1_3 CDS 61239101 61239156 61239101 ID=Msa0130800-mRNA-1:cds;Parent=Msa0130800-mRNA-1
chr1_3 CDS 61239316 61239391 61239316 ID=Msa0130800-mRNA-1:cds;Parent=Msa0130800-mRNA-1
chr1_3 three_prime_UTR 61239392 61239840 61239392 ID=Msa0130800-mRNA-1:three_prime_utr;Parent=Msa0130800-mRNA-1
Gene Sequence

>Msa0130800

ATGGGTTCAGCGGCAACAATGGCAATGACAGCACTCTATTTTACCACCATCAAATCAACCAAACTTACTTCTACCTTCCGCACTCTCCCCCGCTTCACTTGTTCCTCCTCTTCCAAATTCAACATCTCTTTCTCTCCGTCTAATCCCAAACCTAAGCCCGCTCCTCAGCCCAAAACTCAAACCCCCGACCACGACGATGACGAAGGTCCTCTCATGATTCCGTGGATTGTTCGCGGCGAAGATGGCAACTTCAAGCTTCTATCAGAGCCTCCTCCCAGTTTTCTCAAAGAAATGGCTAATGCTCAAACCGGTACAAAAAAATCAGAAAAGGATCAAATTACCAAAAACAAGAAAAAGGGTGAAAAAGAAACGAAGATTCGTGCGGTGACAACGCCGCCGCAGTATTCAAAAGCGGCTAGGAGATTCTATAATGAAAATATTAAGGAGGACTCCGGTACTCGTCTCAGTAAGGTTCTTGCAGCCTCTGGAGTTGCATCTAGGAGAAGCTGTGAAGAACTAATTTTTAAAGGCAAGGTTACTGTTAACGGTTCTGTCTGTAATACACCTCAGACTAAAGTGGATCCCTCAAAGGATAATATCTATGTCAATGGAAGCCGCCTTCCTAAGAGGCAGCCTCACAAAGTTTATCTTGCCTTGAACAAACCAAAAGGGTACATATGCTCATCTGGGGAAAAGGAGTCTAAATCTGTTATAAGTCTATTTGATGATTTTTTGAGCAGTTGGGATAAAAAGCATCCAGGAGTACCCCCACCAAGACTATTTACTGTAGGGCGCCTTGATGTTGCAACTACTGGGTTACTTATTGTGACTAATGATGGAGATTTTGCTCAAAAACTTTCACATCCGTCATCTAATTTTTCAAAAGAATACATTGCAACAGTTAATGGTCTAGTTCATAAGAGGCACTTAACAGCCATAAGTGAGGGAACAACAATTGAGGGTGTCCACTGTGTACCTGATAGTGTGGAGTTACTTCCACGTATGCCGGATACACAAAGATCTCGACTTCGTATTGTGGTTCATGATGGAAGGAAGCATGAAGTTCGTGAACTTGTTAAAAGTGCTGGACTTGAGATTCATTCATTAAAGCGAGTTCGCATCGGTGGTTTTAGACTTCCACCAGACCTTGGGCTAGGGAAGTACATTGAGCTAAATCCGACAAATCTAAAAGCATTGGGAGGAAGAGTTAACAAAGCTAATTCTTAA

Protein sequence

>Msa0130800

MGSAATMAMTALYFTTIKSTKLTSTFRTLPRFTCSSSSKFNISFSPSNPKPKPAPQPKTQTPDHDDDEGPLMIPWIVRGEDGNFKLLSEPPPSFLKEMANAQTGTKKSEKDQITKNKKKGEKETKIRAVTTPPQYSKAARRFYNENIKEDSGTRLSKVLAASGVASRRSCEELIFKGKVTVNGSVCNTPQTKVDPSKDNIYVNGSRLPKRQPHKVYLALNKPKGYICSSGEKESKSVISLFDDFLSSWDKKHPGVPPPRLFTVGRLDVATTGLLIVTNDGDFAQKLSHPSSNFSKEYIATVNGLVHKRHLTAISEGTTIEGVHCVPDSVELLPRMPDTQRSRLRIVVHDGRKHEVRELVKSAGLEIHSLKRVRIGGFRLPPDLGLGKYIELNPTNLKALGGRVNKANS*