AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0514990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514990 MtrunA17_Chr3g0123861 98.858 438 5 0 1 438 1 438 0.0 890
Msa0514990 MtrunA17_Chr2g0333221 48.744 398 188 5 41 428 34 425 1.71e-129 383
Msa0514990 MtrunA17_Chr6g0478651 44.904 363 189 4 76 428 60 421 7.62e-99 305
Msa0514990 MtrunA17_Chr3g0087741 40.845 355 184 8 82 427 89 426 2.65e-71 231
Msa0514990 MtrunA17_Chr4g0010781 38.736 364 208 6 61 422 71 421 2.08e-70 229
Msa0514990 MtrunA17_Chr5g0426951 34.140 372 211 10 79 434 80 433 4.55e-63 211
Msa0514990 MtrunA17_Chr8g0334811 34.615 338 205 9 83 411 15 345 1.97e-52 181
Msa0514990 MtrunA17_Chr2g0322181 31.909 351 220 9 83 423 14 355 1.57e-38 144
Msa0514990 MtrunA17_Chr4g0025401 33.524 349 215 9 83 423 14 353 1.34e-37 141
Msa0514990 MtrunA17_Chr7g0269841 31.412 347 203 12 83 425 27 342 1.40e-34 131
Msa0514990 MtrunA17_Chr3g0138471 28.863 343 213 11 81 419 3 318 3.95e-30 119
Msa0514990 MtrunA17_Chr2g0282741 61.039 77 24 2 81 153 3 77 3.82e-21 94.0
Msa0514990 MtrunA17_Chr2g0282761 51.961 102 36 4 82 180 4 95 2.26e-20 91.7
Msa0514990 MtrunA17_Chr4g0040501 53.763 93 32 3 81 164 3 93 4.12e-20 91.3
Msa0514990 MtrunA17_Chr7g0242951 54.667 75 32 1 82 156 27 99 1.11e-18 88.6
Msa0514990 MtrunA17_Chr4g0006391 54.054 74 32 1 81 152 3 76 2.15e-18 85.9
Msa0514990 MtrunA17_Chr2g0324921 53.333 75 33 1 81 153 3 77 7.37e-18 84.3
Msa0514990 MtrunA17_Chr7g0253281 57.143 63 27 0 82 144 54 116 2.18e-16 79.7
Msa0514990 MtrunA17_Chr1g0209551 58.571 70 28 1 82 150 16 85 1.95e-15 77.8
Msa0514990 MtrunA17_Chr7g0263971 55.385 65 27 1 82 144 369 433 3.59e-15 77.4
Msa0514990 MtrunA17_Chr2g0295821 37.500 104 60 1 77 175 99 202 5.97e-15 75.9
Msa0514990 MtrunA17_Chr2g0328581 33.516 182 70 7 38 198 11 162 2.01e-14 72.0
Msa0514990 MtrunA17_Chr2g0295831 49.296 71 35 1 74 144 103 172 2.84e-14 72.0
Msa0514990 MtrunA17_Chr3g0091361 51.389 72 33 1 82 151 5 76 3.70e-14 71.2
Msa0514990 MtrunA17_Chr5g0414471 57.576 66 27 1 82 146 25 90 7.73e-14 73.2
Msa0514990 MtrunA17_Chr3g0093111 45.679 81 37 2 82 159 2 78 1.24e-13 71.6
Msa0514990 MtrunA17_Chr7g0271891 48.485 66 29 2 83 143 17 82 2.16e-13 67.8
Msa0514990 MtrunA17_Chr8g0344721 42.391 92 42 2 82 166 10 97 3.81e-13 68.9
Msa0514990 MtrunA17_Chr5g0399201 41.250 80 43 1 82 157 12 91 5.20e-13 70.9
Msa0514990 MtrunA17_Chr6g0460411 42.045 88 38 2 82 163 2 82 7.37e-13 67.8
Msa0514990 MtrunA17_Chr6g0460461 42.045 88 38 2 82 163 2 82 8.81e-13 67.4
Msa0514990 MtrunA17_Chr2g0307061 45.070 71 39 0 77 147 105 175 1.36e-12 68.9
Msa0514990 MtrunA17_Chr1g0159491 40.580 69 40 1 80 147 4 72 1.82e-12 62.8
Msa0514990 MtrunA17_Chr1g0173931 53.030 66 26 2 84 146 40 103 2.06e-12 67.4
Msa0514990 MtrunA17_Chr8g0352451 52.174 69 32 1 83 150 73 141 2.31e-12 68.6
Msa0514990 MtrunA17_Chr5g0393371 45.833 72 38 1 80 150 4 75 3.76e-12 67.8
Msa0514990 MtrunA17_Chr4g0021141 48.485 66 33 1 82 146 22 87 4.32e-12 63.5
Msa0514990 MtrunA17_Chr4g0010801 35.833 120 71 3 213 330 49 164 5.68e-12 64.7
Msa0514990 MtrunA17_Chr1g0206121 48.387 62 32 0 82 143 35 96 1.27e-11 65.5
Msa0514990 MtrunA17_Chr5g0415731 38.889 90 46 2 80 160 3 92 1.82e-11 62.0
Msa0514990 MtrunA17_Chr6g0460381 44.118 68 32 1 82 143 3 70 2.47e-11 62.8
Msa0514990 MtrunA17_Chr6g0476751 40.964 83 48 1 77 158 61 143 2.77e-11 65.9
Msa0514990 MtrunA17_Chr8g0378161 38.889 72 41 1 76 144 54 125 3.31e-11 62.4
Msa0514990 MtrunA17_Chr5g0415751 25.581 129 94 2 292 419 26 153 4.17e-11 61.2
Msa0514990 MtrunA17_Chr1g0178901 31.690 142 86 2 80 221 65 195 5.14e-11 64.7
Msa0514990 MtrunA17_Chr2g0301881 40.741 81 45 2 82 161 99 177 5.41e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514990 AT2G22360.1 72.210 439 115 5 1 434 1 437 0.0 654
Msa0514990 AT4G39960.1 67.929 449 131 5 1 438 1 447 0.0 620
Msa0514990 AT4G39960.2 67.929 449 131 5 1 438 1 447 0.0 620
Msa0514990 AT1G80030.4 51.743 373 162 7 70 428 62 430 1.59e-125 373
Msa0514990 AT1G80030.2 51.743 373 162 7 70 428 62 430 2.03e-125 373
Msa0514990 AT1G80030.3 51.743 373 162 7 70 428 62 430 2.03e-125 373
Msa0514990 AT1G80030.1 51.743 373 162 7 70 428 62 430 2.03e-125 373
Msa0514990 AT3G17830.1 46.076 395 196 6 42 425 29 417 1.81e-106 325
Msa0514990 AT5G48030.1 39.948 383 208 8 60 432 75 445 3.80e-76 245
Msa0514990 AT1G28210.1 33.994 353 211 6 82 427 48 385 1.15e-57 195
Msa0514990 AT1G28210.3 33.994 353 211 6 82 427 48 385 1.16e-57 195
Msa0514990 AT1G28210.2 33.994 353 211 6 82 427 48 385 1.98e-57 195
Msa0514990 AT5G22060.1 32.676 355 212 10 83 423 15 356 9.33e-43 155
Msa0514990 AT3G44110.1 32.782 363 220 11 83 434 15 364 4.33e-40 149
Msa0514990 AT3G44110.2 32.024 331 203 10 83 402 15 334 4.87e-34 130
Msa0514990 AT3G62600.1 29.577 355 217 11 75 425 19 344 2.08e-30 120
Msa0514990 AT5G01390.1 25.706 354 230 9 81 425 3 332 1.56e-29 118
Msa0514990 AT3G08910.1 27.568 370 190 13 81 425 3 319 2.03e-26 109
Msa0514990 AT3G08970.1 56.250 80 33 1 81 160 26 103 1.62e-20 94.7
Msa0514990 AT3G08970.2 56.250 80 33 1 81 160 26 103 1.62e-20 94.7
Msa0514990 AT5G25530.2 48.039 102 44 3 82 174 4 105 5.38e-20 91.3
Msa0514990 AT4G28480.2 54.054 74 32 1 82 153 4 77 2.73e-18 85.5
Msa0514990 AT4G28480.2 26.897 145 102 3 282 425 147 288 2.90e-11 64.7
Msa0514990 AT2G20560.1 50.000 88 40 2 81 164 3 90 3.39e-18 85.9
Msa0514990 AT2G20560.1 25.185 135 99 2 292 425 202 335 6.52e-12 67.0
Msa0514990 AT4G28480.1 54.054 74 32 1 82 153 4 77 4.69e-18 85.5
Msa0514990 AT5G25530.1 44.545 110 44 4 82 174 4 113 2.03e-17 83.6
Msa0514990 AT1G10350.1 49.333 75 36 1 81 153 3 77 6.52e-17 82.0
Msa0514990 AT1G10350.1 31.538 130 84 4 292 419 213 339 7.73e-11 63.9
Msa0514990 AT5G01390.3 52.778 72 32 1 81 150 3 74 8.03e-17 80.1
Msa0514990 AT5G01390.4 53.521 71 31 1 82 150 4 74 9.81e-17 79.7
Msa0514990 AT5G01390.2 52.778 72 32 1 81 150 3 74 1.46e-16 80.1
Msa0514990 AT3G47940.1 52.703 74 32 1 81 151 3 76 2.51e-16 80.5
Msa0514990 AT3G47940.1 24.865 185 131 5 238 419 160 339 6.52e-12 67.0
Msa0514990 AT1G59725.1 50.000 76 35 1 81 153 3 78 5.16e-16 79.3
Msa0514990 AT1G59725.1 27.692 130 90 3 292 419 194 321 4.76e-11 64.3
Msa0514990 AT1G59980.2 59.375 64 25 1 84 146 25 88 2.41e-15 77.8
Msa0514990 AT5G59610.2 46.753 77 41 0 66 142 57 133 3.29e-15 75.9
Msa0514990 AT1G59980.1 59.375 64 25 1 84 146 25 88 3.70e-15 77.4
Msa0514990 AT5G18140.1 52.381 63 30 0 82 144 77 139 6.25e-15 75.9
Msa0514990 AT1G56300.2 48.529 68 30 2 81 143 12 79 6.81e-15 71.2
Msa0514990 AT5G59610.1 46.753 77 41 0 66 142 57 133 7.98e-15 74.7
Msa0514990 AT5G59610.4 46.753 77 41 0 66 142 57 133 7.98e-15 74.7
Msa0514990 AT5G59610.3 46.753 77 41 0 66 142 57 133 8.72e-15 74.7
Msa0514990 AT5G59610.5 46.753 77 41 0 66 142 57 133 8.72e-15 74.7
Msa0514990 AT1G56300.1 50.000 66 28 2 83 143 14 79 1.56e-14 71.2
Msa0514990 AT2G41000.2 44.086 93 41 3 81 167 2 89 3.28e-14 72.0
Msa0514990 AT3G57340.1 38.095 105 56 2 77 172 108 212 4.38e-14 73.9
Msa0514990 AT3G57340.2 38.095 105 56 2 77 172 108 212 4.38e-14 73.9
Msa0514990 AT5G49060.2 49.315 73 36 1 74 146 92 163 6.00e-14 73.2
Msa0514990 AT5G49060.1 49.315 73 36 1 74 146 92 163 6.00e-14 73.2
Msa0514990 AT5G05750.1 35.185 108 62 1 77 176 109 216 6.19e-14 72.4
Msa0514990 AT2G41000.1 44.565 92 40 3 82 167 3 89 7.97e-14 70.1
Msa0514990 AT1G24120.1 56.061 66 28 1 82 146 20 85 1.15e-13 73.2
Msa0514990 AT1G68370.1 54.286 70 31 1 82 150 17 86 1.90e-13 72.0
Msa0514990 AT5G03160.1 50.769 65 30 1 82 144 370 434 2.97e-13 72.0
Msa0514990 AT4G39150.3 35.833 120 69 3 80 196 4 118 3.00e-13 71.2
Msa0514990 AT4G39150.1 35.833 120 69 3 80 196 4 118 3.00e-13 71.2
Msa0514990 AT4G39150.2 35.833 120 69 3 80 196 4 118 3.00e-13 71.2
Msa0514990 AT4G13830.3 42.683 82 42 2 80 158 64 143 1.98e-12 66.2
Msa0514990 AT2G21510.3 43.836 73 40 1 80 151 4 76 2.10e-12 68.6
Msa0514990 AT2G21510.1 43.836 73 40 1 80 151 4 76 2.10e-12 68.6
Msa0514990 AT4G13830.1 42.683 82 42 2 80 158 64 143 2.20e-12 65.1
Msa0514990 AT2G21510.2 43.836 73 40 1 80 151 4 76 2.28e-12 68.6
Msa0514990 AT2G21510.4 43.836 73 40 1 80 151 4 76 2.28e-12 68.6
Msa0514990 AT2G21510.5 43.836 73 40 1 80 151 4 76 2.38e-12 68.2
Msa0514990 AT5G06910.1 38.043 92 51 2 84 174 31 117 5.55e-12 66.6
Msa0514990 AT4G13830.2 42.683 82 42 2 80 158 64 143 5.76e-12 65.1
Msa0514990 AT1G76700.1 48.611 72 36 1 80 150 4 75 5.86e-12 67.4
Msa0514990 AT5G16650.1 50.000 66 32 1 82 146 11 76 8.25e-12 62.8
Msa0514990 AT2G17880.1 40.909 88 46 3 79 163 65 149 1.22e-11 63.2
Msa0514990 AT2G35720.1 43.836 73 37 1 82 150 15 87 1.27e-11 67.0
Msa0514990 AT1G79940.4 43.210 81 43 2 82 161 99 177 1.63e-11 66.6
Msa0514990 AT5G16650.2 50.794 63 30 1 82 143 11 73 1.67e-11 63.2
Msa0514990 AT1G79940.2 43.210 81 43 2 82 161 99 177 1.92e-11 66.6
Msa0514990 AT1G79940.3 43.210 81 43 2 82 161 99 177 1.92e-11 66.6
Msa0514990 AT1G79940.1 43.210 81 43 2 82 161 99 177 1.92e-11 66.6
Msa0514990 AT1G21080.3 38.542 96 49 2 80 174 4 90 3.27e-11 65.1
Msa0514990 AT4G37480.1 46.154 65 32 1 84 145 58 122 3.35e-11 65.5
Msa0514990 AT1G21080.1 45.833 72 38 1 80 150 4 75 3.55e-11 65.1
Msa0514990 AT5G37380.8 47.059 68 36 0 77 144 61 128 3.71e-11 65.1
Msa0514990 AT5G37380.4 47.059 68 36 0 77 144 61 128 3.71e-11 65.1
Msa0514990 AT5G37380.7 47.059 68 36 0 77 144 61 128 3.71e-11 65.1
Msa0514990 AT5G37380.2 47.059 68 36 0 77 144 61 128 3.71e-11 65.1
Msa0514990 AT5G37380.6 47.059 68 36 0 77 144 61 128 3.71e-11 65.1
Msa0514990 AT5G37380.1 47.059 68 36 0 77 144 61 128 3.71e-11 65.1
Msa0514990 AT5G37380.5 47.059 68 36 0 77 144 61 128 3.71e-11 65.1
Msa0514990 AT5G37380.3 47.059 68 36 0 77 144 61 128 3.71e-11 65.1
Msa0514990 AT5G37380.9 47.059 68 36 0 77 144 61 128 3.71e-11 65.1
Msa0514990 AT4G09350.1 41.772 79 44 1 67 143 91 169 4.99e-11 63.2
Msa0514990 AT2G25560.1 41.758 91 48 1 76 166 60 145 5.27e-11 65.1
Msa0514990 AT1G72070.1 44.262 61 32 1 73 133 30 88 5.42e-11 60.5
Msa0514990 AT4G36040.1 38.053 113 54 4 38 144 29 131 6.44e-11 61.2
Msa0514990 AT3G12170.2 34.188 117 64 4 66 174 24 135 7.71e-11 63.2
Msa0514990 AT1G72070.2 45.000 60 31 1 73 132 30 87 7.81e-11 58.9

Find 171 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATTCTGGTAGCCGTTTA+AGG 0.182163 3_4:-65949528 Msa0514990:CDS
ATATATGAAGGGGCATTATT+AGG 0.202462 3_4:-65954380 None:intergenic
ACAGCATTGGATTATATTCT+TGG 0.219663 3_4:-65948892 Msa0514990:three_prime_UTR
TTTGGGGAGGCAGGGCTTAA+AGG 0.247726 3_4:-65950084 Msa0514990:CDS
CGGTCCATATATGACAAATT+TGG 0.261820 3_4:-65950102 Msa0514990:CDS
TCACATCTGGATGATAATTT+CGG 0.265510 3_4:+65950637 None:intergenic
GAAAGAGAAACCTGTGTTAT+AGG 0.266276 3_4:+65954148 None:intergenic
TACAAGCAGGATAAGCTTTA+TGG 0.275354 3_4:-65952174 Msa0514990:CDS
GGTCCATATATGACAAATTT+GGG 0.277603 3_4:-65950101 Msa0514990:CDS
CTCCCCAAATTTGTCATATA+TGG 0.277754 3_4:+65950098 None:intergenic
AATCTTGGGGACTACAATTA+AGG 0.292885 3_4:-65949365 Msa0514990:CDS
AATGAAGCATCCATAATAAA+AGG 0.301948 3_4:+65949063 None:intergenic
CTTAAAGGTTCACCGGGATT+TGG 0.302482 3_4:-65950069 Msa0514990:CDS
GTCTTATATTGATGCAATCT+TGG 0.313538 3_4:-65949380 Msa0514990:CDS
ACCCCTTGCAGTACATGTTC+TGG 0.319612 3_4:-65949604 Msa0514990:CDS
TATATGAAGGGGCATTATTA+GGG 0.323028 3_4:-65954379 None:intergenic
GTTCCAGCCGGTGTGGATTC+TGG 0.326305 3_4:-65949541 Msa0514990:CDS
CCGGGATTTGGTGGAGGCAT+GGG 0.327029 3_4:-65950057 Msa0514990:CDS
TTGTAAATGTTTCAGCTTAC+CGG 0.333265 3_4:-65950668 Msa0514990:intron
CACATCTGGATGATAATTTC+GGG 0.342735 3_4:+65950638 None:intergenic
TGGTGCAGAAGAGAAATTTA+AGG 0.344525 3_4:-65950250 Msa0514990:CDS
TCTTATATTGATGCAATCTT+GGG 0.353264 3_4:-65949379 Msa0514990:CDS
CAAATCCGCCTATGTCTATA+AGG 0.354679 3_4:+65949011 None:intergenic
TAGATGGCAGTTACACCTTT+TGG 0.360482 3_4:-65953703 Msa0514990:CDS
TTCCAGAGTTACCTTCATTT+CGG 0.363610 3_4:+65949503 None:intergenic
TCTCGTTTAAGCACGGGATC+AGG 0.372793 3_4:+65949433 None:intergenic
CTTCATTTCGGACCCTTAAA+CGG 0.373498 3_4:+65949515 None:intergenic
CGGGATTTGGTGGAGGCATG+GGG 0.373624 3_4:-65950056 Msa0514990:CDS
CTTGGCTATTGTGGTGGATC+TGG 0.376282 3_4:+65953636 None:intergenic
ATTAAGGTTCCGACTGTAGA+TGG 0.378346 3_4:-65949349 Msa0514990:CDS
GGATTCTGGTAGCCGTTTAA+GGG 0.391936 3_4:-65949527 Msa0514990:CDS
ACCGGGATTTGGTGGAGGCA+TGG 0.393345 3_4:-65950058 Msa0514990:CDS
TGTGGTACTTGCGATGGTTC+AGG 0.397485 3_4:-65949766 Msa0514990:CDS
TTCATGACCTTGGTATATAT+AGG 0.399180 3_4:-65949042 Msa0514990:three_prime_UTR
ATGTAACACATGTGGTGGTC+AGG 0.403113 3_4:-65949716 Msa0514990:CDS
GGAAGGAGAGGATGAGGAAG+TGG 0.403515 3_4:+65954199 None:intergenic
AGCGACTCAAACAGATCAAA+AGG 0.403699 3_4:+65949931 None:intergenic
GATAATTTCGGGCTAGCTTC+CGG 0.405239 3_4:+65950649 None:intergenic
AATACTCACTTGTTCACATC+TGG 0.408035 3_4:+65950624 None:intergenic
GAAGTTGGAAGGAGAGGATG+AGG 0.414984 3_4:+65954193 None:intergenic
CAGGACTACTACACCGTCCT+TGG 0.424406 3_4:-65951888 Msa0514990:CDS
ACCAGGATCAACACTTGTTA+TGG 0.426673 3_4:-65949293 Msa0514990:CDS
GTGGATTTGAAAATCCCATC+TGG 0.440632 3_4:-65949322 Msa0514990:CDS
CCCCTTGCAGTACATGTTCT+GGG 0.441535 3_4:-65949603 Msa0514990:CDS
TATGACAAATTTGGGGAGGC+AGG 0.442220 3_4:-65950093 Msa0514990:CDS
GTACATGTTCTGGGGATGGC+CGG 0.445163 3_4:-65949594 Msa0514990:CDS
AGAGGGAATGAAAGGGAACT+TGG 0.445557 3_4:+65954267 None:intergenic
CATCTGGATGATTTAGTCCC+TGG 0.446833 3_4:+65949736 None:intergenic
TGCTGAATAAGAAGAATATG+AGG 0.451840 3_4:-65949252 Msa0514990:CDS
ACCTTATGCTGCAGAGATCC+TGG 0.451999 3_4:-65950270 Msa0514990:intron
CTGTTTGAGTCGCTATTTGA+GGG 0.452801 3_4:-65949922 Msa0514990:CDS
AGGACTACTACACCGTCCTT+GGG 0.453339 3_4:-65951887 Msa0514990:CDS
TAGTACATCAGCTACTCAAT+GGG 0.464566 3_4:-65953680 Msa0514990:CDS
GGAAAGAAAGGTGGTTCTCC+TGG 0.465052 3_4:-65949484 Msa0514990:CDS
TCTTGATGATGAAATTCCTC+TGG 0.466336 3_4:+65953762 None:intergenic
ACAGAAACAAACCAAACTAA+AGG 0.474632 3_4:-65954314 Msa0514990:five_prime_UTR
TTAAATTTCTCTTCTGCACC+AGG 0.476100 3_4:+65950252 None:intergenic
TTAGTCAGTGTTATTCATGA+AGG 0.476124 3_4:-65948861 Msa0514990:three_prime_UTR
ACCACCACATGTGTTACATC+TGG 0.476919 3_4:+65949720 None:intergenic
CAGAAACAAACCAAACTAAA+GGG 0.478482 3_4:-65954313 Msa0514990:five_prime_UTR
TGCTCGTCTTGCAATGGGAC+TGG 0.478835 3_4:-65949637 Msa0514990:CDS
TGACTTGCTCGTCTTGCAAT+GGG 0.482426 3_4:-65949642 Msa0514990:CDS
ACTGCTTGGGAGAGAGAAGT+TGG 0.485585 3_4:+65954178 None:intergenic
GCTTATAGAGAGGGAATGAA+AGG 0.488156 3_4:+65954259 None:intergenic
CGTTTAAGGGTCCGAAATGA+AGG 0.488601 3_4:-65949514 Msa0514990:CDS
TCTGTTTGAGTCGCTATTTG+AGG 0.489195 3_4:-65949923 Msa0514990:CDS
ATGACTTGCTCGTCTTGCAA+TGG 0.491631 3_4:-65949643 Msa0514990:CDS
ATGGTCGCAGCAGACAATCT+TGG 0.494344 3_4:-65949894 Msa0514990:CDS
TGCATCGTCGAAGGGGATCA+AGG 0.494975 3_4:-65952085 Msa0514990:CDS
CTACCAGAATCCACACCGGC+TGG 0.495088 3_4:+65949538 None:intergenic
GAAGGTAACTCTGGAAAGAA+AGG 0.495407 3_4:-65949496 Msa0514990:CDS
GGATGCTTCATTCATGACCT+TGG 0.503641 3_4:-65949052 Msa0514990:three_prime_UTR
TGGAAAAGGAGATAGAGATT+AGG 0.510570 3_4:-65949801 Msa0514990:CDS
GGTGTCTTCTCGTTTAAGCA+CGG 0.510856 3_4:+65949426 None:intergenic
TACATGTTCTGGGGATGGCC+GGG 0.512446 3_4:-65949593 Msa0514990:CDS
AAAGGTTCACCGGGATTTGG+TGG 0.514440 3_4:-65950066 Msa0514990:CDS
GTAGTACATCAGCTACTCAA+TGG 0.516566 3_4:-65953681 Msa0514990:CDS
TTATAGGCGCTGCTACTGCT+TGG 0.519361 3_4:+65954164 None:intergenic
TCTTGGAATGGAGCAATGAA+TGG 0.519565 3_4:-65949877 Msa0514990:CDS
GTGTCTTCTCGTTTAAGCAC+GGG 0.522378 3_4:+65949427 None:intergenic
GATCCTGGTTGTGTCCCAGA+TGG 0.522621 3_4:+65949307 None:intergenic
ACTAAATCTGAAATTAAGAC+TGG 0.522708 3_4:-65951849 Msa0514990:intron
TTTCTTGCAGTGCTACAAGC+AGG 0.523918 3_4:-65952187 Msa0514990:intron
TGCAGTACATGTTCTGGGGA+TGG 0.526866 3_4:-65949598 Msa0514990:CDS
GTGTCTTGATGATGCAAACT+TGG 0.526872 3_4:+65953618 None:intergenic
CACATGTGGTGGTCAGGGAC+GGG 0.527198 3_4:-65949710 Msa0514990:CDS
GCCATAACAAGTGTTGATCC+TGG 0.527492 3_4:+65949292 None:intergenic
TATAGGCGCTGCTACTGCTT+GGG 0.527938 3_4:+65954165 None:intergenic
AAAACTGATTGAGGAACTCT+CGG 0.528888 3_4:-65949170 Msa0514990:CDS
TGAGTCGCTATTTGAGGGCA+TGG 0.529744 3_4:-65949917 Msa0514990:CDS
GAGAGAGAAGTTGGAAGGAG+AGG 0.531344 3_4:+65954187 None:intergenic
ATCCTGGTTGTGTCCCAGAT+GGG 0.532879 3_4:+65949308 None:intergenic
CTCGTTTAAGCACGGGATCA+GGG 0.534085 3_4:+65949434 None:intergenic
CCCATGCCTCCACCAAATCC+CGG 0.534210 3_4:+65950057 None:intergenic
TTGTTACTCCTTATAGACAT+AGG 0.535142 3_4:-65949019 Msa0514990:three_prime_UTR
ACATAGGCGGATTTGAAGAA+AGG 0.536912 3_4:-65949003 Msa0514990:three_prime_UTR
ATCCCATCTGGGACACAACC+AGG 0.538117 3_4:-65949310 Msa0514990:CDS
TGATGCAAACTTGGCTATTG+TGG 0.538121 3_4:+65953627 None:intergenic
TAGTCAGTGTTATTCATGAA+GGG 0.538587 3_4:-65948860 Msa0514990:three_prime_UTR
CACTCAAACAAGGACTCCGT+TGG 0.539049 3_4:-65949683 Msa0514990:CDS
ACACTTGTTATGGCAAAGAA+AGG 0.539668 3_4:-65949283 Msa0514990:CDS
TCGCTATTTGAGGGCATGGA+TGG 0.540022 3_4:-65949913 Msa0514990:CDS
ATGACAAATTTGGGGAGGCA+GGG 0.541510 3_4:-65950092 Msa0514990:CDS
GTAGCTGATGTACTACCAAA+AGG 0.543027 3_4:+65953688 None:intergenic
ATCAAACTTTGCATCGTCGA+AGG 0.545133 3_4:-65952094 Msa0514990:CDS
ACTCAAACAAGGACTCCGTT+GGG 0.546387 3_4:-65949682 Msa0514990:CDS
CGCAGCAGACAATCTTGGAA+TGG 0.550184 3_4:-65949889 Msa0514990:CDS
TTTACAAGAATATAAAATGT+TGG 0.551313 3_4:+65949405 None:intergenic
CGGATTTGAAGAAAGGACAT+AGG 0.552842 3_4:-65948996 Msa0514990:three_prime_UTR
CGATGAGAGAAAACTGATTG+AGG 0.553553 3_4:-65949179 Msa0514990:CDS
CTTATAGAGAGGGAATGAAA+GGG 0.554331 3_4:+65954260 None:intergenic
GTCCGAAATGAAGGTAACTC+TGG 0.554384 3_4:-65949505 Msa0514990:CDS
TCAAACTTTGCATCGTCGAA+GGG 0.557101 3_4:-65952093 Msa0514990:CDS
ACACATGTGGTGGTCAGGGA+CGG 0.560533 3_4:-65949711 Msa0514990:CDS
CCCCAGAACATGTACTGCAA+GGG 0.565096 3_4:+65949602 None:intergenic
GGTTCACCGGGATTTGGTGG+AGG 0.565243 3_4:-65950063 Msa0514990:CDS
GGCAGGGCTTAAAGGTTCAC+CGG 0.569076 3_4:-65950076 Msa0514990:CDS
AGTAGCAGCGCCTATAACAC+AGG 0.569425 3_4:-65954158 Msa0514990:intron
CGGTATGAGATGATATTTCG+TGG 0.569871 3_4:-65949122 Msa0514990:exon
ATATTCTTCTTATTCAGCAG+AGG 0.569920 3_4:+65949256 None:intergenic
GGGAATTCGTCCTCAGATTG+TGG 0.570156 3_4:-65953659 Msa0514990:CDS
AGGCAACATTAGTGTAGTGT+AGG 0.574255 3_4:-65954339 Msa0514990:five_prime_UTR
GGGATTTGGTGGAGGCATGG+GGG 0.576356 3_4:-65950055 Msa0514990:intron
GCTGAATAAGAAGAATATGA+GGG 0.578910 3_4:-65949251 Msa0514990:CDS
AGCAAAGGCAAGACTGCCGC+CGG 0.579260 3_4:-65949142 Msa0514990:CDS
GCGACTCAAACAGATCAAAA+GGG 0.581128 3_4:+65949932 None:intergenic
TGTAACACATGTGGTGGTCA+GGG 0.583052 3_4:-65949715 Msa0514990:CDS
TGAACCTATATTAAAACGCA+AGG 0.584026 3_4:+65952118 None:intergenic
TCTTGTCAGATGATGAGAAA+CGG 0.584943 3_4:-65950122 Msa0514990:CDS
AACAAAGCGGATAAGTCTCA+AGG 0.588965 3_4:-65949563 Msa0514990:CDS
TCCCCAGAACATGTACTGCA+AGG 0.589752 3_4:+65949601 None:intergenic
CTTGGGAGAGAGAAGTTGGA+AGG 0.596682 3_4:+65954182 None:intergenic
GCAGGGCTTAAAGGTTCACC+GGG 0.602555 3_4:-65950075 Msa0514990:CDS
GGTTCCGACTGTAGATGGAA+TGG 0.604592 3_4:-65949344 Msa0514990:CDS
CACGAAATATCATCTCATAC+CGG 0.605585 3_4:+65949123 None:intergenic
GATGGTTCAGGAGCTAAACC+AGG 0.608802 3_4:-65949754 Msa0514990:CDS
GGGAATGAAAGGGAACTTGG+TGG 0.610006 3_4:+65954270 None:intergenic
AGAACAACAAAGAGGTCACC+AGG 0.612651 3_4:+65949466 None:intergenic
TGGATTTGAAAATCCCATCT+GGG 0.615278 3_4:-65949321 Msa0514990:CDS
CCCAGAACATGTACTGCAAG+GGG 0.617559 3_4:+65949603 None:intergenic
TCTCAAGGTTCCAGCCGGTG+TGG 0.618146 3_4:-65949548 Msa0514990:CDS
ATAAGTCTCAAGGTTCCAGC+CGG 0.620771 3_4:-65949553 Msa0514990:CDS
CTTATATTGATGCAATCTTG+GGG 0.623095 3_4:-65949378 Msa0514990:CDS
GACGGGTTGTCACTCAAACA+AGG 0.625091 3_4:-65949693 Msa0514990:CDS
TGCAAACTTGGCTATTGTGG+TGG 0.627230 3_4:+65953630 None:intergenic
GGTAACTCTGGAAAGAAAGG+TGG 0.630205 3_4:-65949493 Msa0514990:CDS
TTACTCCTTATAGACATAGG+CGG 0.632114 3_4:-65949016 Msa0514990:three_prime_UTR
GAACTCTCGGAGTTGAGCAA+AGG 0.632985 3_4:-65949157 Msa0514990:CDS
GAGAAGTGTGGTACTTGCGA+TGG 0.635595 3_4:-65949772 Msa0514990:CDS
TCCAGATGTAACACATGTGG+TGG 0.637762 3_4:-65949721 Msa0514990:CDS
TCCACCATTCCATCTACAGT+CGG 0.638944 3_4:+65949340 None:intergenic
GGAAATCAGTAATGCGTACG+AGG 0.643998 3_4:-65950229 Msa0514990:intron
GGACTACTACACCGTCCTTG+GGG 0.645334 3_4:-65951886 Msa0514990:CDS
CCCTTGCAGTACATGTTCTG+GGG 0.646072 3_4:-65949602 Msa0514990:CDS
GTGGATCTGGCCACAATCTG+AGG 0.648017 3_4:+65953649 None:intergenic
TAACTTCAAGAACAACAAAG+AGG 0.649565 3_4:+65949458 None:intergenic
GACTGCTGAAAGATACCCAA+CGG 0.649757 3_4:+65949667 None:intergenic
CAAACTTTGCATCGTCGAAG+GGG 0.657260 3_4:-65952092 Msa0514990:CDS
CATATATGACAAATTTGGGG+AGG 0.659382 3_4:-65950097 Msa0514990:CDS
GGTATGAGATGATATTTCGT+GGG 0.660372 3_4:-65949121 Msa0514990:exon
TCCGACTGTAGATGGAATGG+TGG 0.660929 3_4:-65949341 Msa0514990:CDS
GTCCATATATGACAAATTTG+GGG 0.662707 3_4:-65950100 Msa0514990:CDS
CTGAATAAGAAGAATATGAG+GGG 0.668517 3_4:-65949250 Msa0514990:CDS
TCATCCAGATGTAACACATG+TGG 0.669998 3_4:-65949724 Msa0514990:CDS
GTAACAACCTATATATACCA+AGG 0.685901 3_4:+65949035 None:intergenic
ATTAGGCGACTAGAGAAGTG+TGG 0.694061 3_4:-65949784 Msa0514990:CDS
GGGTTCTAGAAAGAGCGACA+AGG 0.694756 3_4:-65954359 Msa0514990:five_prime_UTR
ATGGTTCAGGAGCTAAACCA+GGG 0.708190 3_4:-65949753 Msa0514990:CDS
GAAATATCATCTCATACCGG+CGG 0.725473 3_4:+65949126 None:intergenic
AGTACATCAGCTACTCAATG+GGG 0.730358 3_4:-65953679 Msa0514990:CDS
ACGGCTACCAGAATCCACAC+CGG 0.739891 3_4:+65949534 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAGTTTATATAATATAAA+AGG + chr3_4:65951493-65951512 None:intergenic 10.0%
!!! ATTTTATTTTCCTTTTATTA+TGG - chr3_4:65954125-65954144 Msa0514990:intron 10.0%
!!! TTATTTATTTTCAATAACCA+AGG - chr3_4:65949220-65949239 Msa0514990:CDS 15.0%
!! TATATTTCATATTCATCAAA+TGG + chr3_4:65950391-65950410 None:intergenic 15.0%
!! TTAAATGTAAAAAATCCTAA+AGG - chr3_4:65950527-65950546 Msa0514990:intron 15.0%
!!! ATTTTCATTCTTCTAAAATA+CGG - chr3_4:65950590-65950609 Msa0514990:intron 15.0%
!!! TCTGTTTTTTTTTTTAACTT+AGG - chr3_4:65950670-65950689 Msa0514990:intron 15.0%
!!! CTTTTTATATTTTTTTACGA+GGG - chr3_4:65951200-65951219 Msa0514990:intron 15.0%
!!! AATTTTGAAAGTTTCAAATT+TGG + chr3_4:65952176-65952195 None:intergenic 15.0%
!!! ATTTCATTTCACTTTTTTTT+TGG - chr3_4:65952332-65952351 Msa0514990:intron 15.0%
!! TTTACAAGAATATAAAATGT+TGG + chr3_4:65953796-65953815 None:intergenic 15.0%
!!! TTACATTTTAGTTATATTCT+TGG - chr3_4:65954270-65954289 Msa0514990:five_prime_UTR 15.0%
!!! TTTTGAGAATATAGAATAGA+TGG - chr3_4:65949479-65949498 Msa0514990:CDS 20.0%
!!! TCTTATACCAAACTTTTTTA+TGG + chr3_4:65949696-65949715 None:intergenic 20.0%
!! ACTCCAATAAAATAAAATCA+CGG - chr3_4:65949999-65950018 Msa0514990:intron 20.0%
!! AGTAAATGTGAATAATTAAG+CGG + chr3_4:65950114-65950133 None:intergenic 20.0%
!!! TTTTTCTCAATCAATTCTTA+AGG - chr3_4:65950275-65950294 Msa0514990:intron 20.0%
!!! TTTTCTCAATCAATTCTTAA+GGG - chr3_4:65950276-65950295 Msa0514990:intron 20.0%
!! ATGAATTTGAAGAATCAAAT+AGG - chr3_4:65950496-65950515 Msa0514990:intron 20.0%
!!! GGATTTTTTACATTTAACAA+TGG + chr3_4:65950524-65950543 None:intergenic 20.0%
!!! TTTTAGAAGAATGAAAATAG+AGG + chr3_4:65950588-65950607 None:intergenic 20.0%
!! CCTCGTAAAAAAATATAAAA+AGG + chr3_4:65951202-65951221 None:intergenic 20.0%
!!! CCTTTTTATATTTTTTTACG+AGG - chr3_4:65951199-65951218 Msa0514990:intron 20.0%
!! ATAGTATTTCAATTAGTCAA+TGG + chr3_4:65951528-65951547 None:intergenic 20.0%
!!! TTAATTCTTGTTCTATGTTT+TGG + chr3_4:65951628-65951647 None:intergenic 20.0%
!! GAGTTATATTAAATGAGATT+TGG + chr3_4:65951920-65951939 None:intergenic 20.0%
!!! TAAATGTTTAGTTTGAACTT+CGG + chr3_4:65952313-65952332 None:intergenic 20.0%
!! AATTATGCAACTAGAAATTA+TGG + chr3_4:65952845-65952864 None:intergenic 20.0%
!!! TTGCATAATTTTTTTTCACA+TGG - chr3_4:65952855-65952874 Msa0514990:intron 20.0%
!! TTAAAATTCTCCATAATCTT+TGG + chr3_4:65953187-65953206 None:intergenic 20.0%
!! TGTAAAATCTTTGTGTTTAT+AGG - chr3_4:65953233-65953252 Msa0514990:intron 20.0%
! AGACGTTTGAATATTTGAAT+TGG + chr3_4:65949092-65949111 None:intergenic 25.0%
! ATCCAATCTATCAATAATGA+AGG + chr3_4:65949159-65949178 None:intergenic 25.0%
!!! CTACAAAAAGCACTTATTTT+CGG + chr3_4:65949379-65949398 None:intergenic 25.0%
! TCTCTTGTATATTACTTTGA+AGG - chr3_4:65949636-65949655 Msa0514990:CDS 25.0%
! TCTCATTGAAAAGAAATATC+CGG - chr3_4:65949799-65949818 Msa0514990:CDS 25.0%
! TACTGGAGTTAAGAAAAAAT+GGG - chr3_4:65949861-65949880 Msa0514990:CDS 25.0%
!!! TTATTTTATTGGAGTTCCAA+AGG + chr3_4:65949994-65950013 None:intergenic 25.0%
!!! ACACCGTGATTTTATTTTAT+TGG + chr3_4:65950005-65950024 None:intergenic 25.0%
! GTAAATGTGAATAATTAAGC+GGG + chr3_4:65950113-65950132 None:intergenic 25.0%
! GATTCAATTATTCAATCATC+TGG - chr3_4:65950251-65950270 Msa0514990:CDS 25.0%
! TCAAATTCATTGATGAGAAT+TGG + chr3_4:65950486-65950505 None:intergenic 25.0%
!!! AGAGGCATTGAATATTAAAT+AGG + chr3_4:65950570-65950589 None:intergenic 25.0%
!! TAATGCAGTGATTTAAAATG+AGG + chr3_4:65950746-65950765 None:intergenic 25.0%
! TAGATATTCAGCCAATATAT+TGG + chr3_4:65951275-65951294 None:intergenic 25.0%
!! ACTAAATCTGAAATTAAGAC+TGG - chr3_4:65951349-65951368 Msa0514990:intron 25.0%
! TACTCATAAAATGTTTGTGA+AGG - chr3_4:65951548-65951567 Msa0514990:intron 25.0%
! TCCTATATTCTTCTGTATTT+AGG - chr3_4:65951823-65951842 Msa0514990:intron 25.0%
! ACCTAAATACAGAAGAATAT+AGG + chr3_4:65951827-65951846 None:intergenic 25.0%
!!! AAAGAAGAGTATTGGTATTA+GGG + chr3_4:65951958-65951977 None:intergenic 25.0%
!!! TAAAGAAGAGTATTGGTATT+AGG + chr3_4:65951959-65951978 None:intergenic 25.0%
!! TTAAGGTTAAAGAAGAGTAT+TGG + chr3_4:65951966-65951985 None:intergenic 25.0%
!!! ATTTTGTTTAGTGCCAAAAA+AGG - chr3_4:65952141-65952160 Msa0514990:CDS 25.0%
! TGAAAGTTTCAAATTTGGTT+TGG + chr3_4:65952171-65952190 None:intergenic 25.0%
!!! TTTTTTTTGGTAATCAATGC+AGG - chr3_4:65952345-65952364 Msa0514990:intron 25.0%
! TATCAGAAACATCAATTACT+CGG - chr3_4:65952394-65952413 Msa0514990:intron 25.0%
! TAGAAAAGGAAAAAAAGAGT+GGG + chr3_4:65952661-65952680 None:intergenic 25.0%
! TTAGAAAAGGAAAAAAAGAG+TGG + chr3_4:65952662-65952681 None:intergenic 25.0%
! TAAGGTGAATACACATATAT+AGG + chr3_4:65952914-65952933 None:intergenic 25.0%
! TATGAACTAACCATGAATTA+GGG + chr3_4:65953024-65953043 None:intergenic 25.0%
! TTATGAACTAACCATGAATT+AGG + chr3_4:65953025-65953044 None:intergenic 25.0%
!! ATGTAACTATAATCCTTTTC+AGG - chr3_4:65953053-65953072 Msa0514990:intron 25.0%
!!! AACTTTAAAGAAGCTGTTTT+CGG - chr3_4:65953372-65953391 Msa0514990:intron 25.0%
!! AATGAAGCATCCATAATAAA+AGG + chr3_4:65954138-65954157 None:intergenic 25.0%
ACAGAAACAAACCAAACTAA+AGG - chr3_4:65948884-65948903 Msa0514990:three_prime_UTR 30.0%
CAGAAACAAACCAAACTAAA+GGG - chr3_4:65948885-65948904 Msa0514990:three_prime_UTR 30.0%
! TCTTCTTTTACCCTTTAGTT+TGG + chr3_4:65948898-65948917 None:intergenic 30.0%
!! GATTGTTTTGCTTATAGAGA+GGG + chr3_4:65948951-65948970 None:intergenic 30.0%
!! AGATTGTTTTGCTTATAGAG+AGG + chr3_4:65948952-65948971 None:intergenic 30.0%
CTCCTTCATTATTGATAGAT+TGG - chr3_4:65949154-65949173 Msa0514990:CDS 30.0%
!!! AACTTTTTTATGGCTATAGC+CGG + chr3_4:65949686-65949705 None:intergenic 30.0%
GCTATAGCCATAAAAAAGTT+TGG - chr3_4:65949686-65949705 Msa0514990:CDS 30.0%
!!! CATTTTTTCTTAACTCCAGT+AGG + chr3_4:65949862-65949881 None:intergenic 30.0%
CTACTGGAGTTAAGAAAAAA+TGG - chr3_4:65949860-65949879 Msa0514990:CDS 30.0%
ACTGGAGTTAAGAAAAAATG+GGG - chr3_4:65949862-65949881 Msa0514990:CDS 30.0%
CACCAAGAATCAATTCTATT+TGG + chr3_4:65950085-65950104 None:intergenic 30.0%
!! AGATTTTAGAAGAGACGATT+TGG + chr3_4:65950168-65950187 None:intergenic 30.0%
TAAAATCTGTATCATTCACC+TGG - chr3_4:65950180-65950199 Msa0514990:intron 30.0%
! ACAAATTGGTAGCACTATTT+AGG - chr3_4:65950349-65950368 Msa0514990:intron 30.0%
TATTCATCAAATGGCACAAA+TGG + chr3_4:65950382-65950401 None:intergenic 30.0%
!! TTCATTCTTCTAAAATACGG+AGG - chr3_4:65950593-65950612 Msa0514990:intron 30.0%
!! TCATTCTTCTAAAATACGGA+GGG - chr3_4:65950594-65950613 Msa0514990:intron 30.0%
ATTGTGATTAAATTGCGTTG+TGG - chr3_4:65950717-65950736 Msa0514990:intron 30.0%
TTGTGATTAAATTGCGTTGT+GGG - chr3_4:65950718-65950737 Msa0514990:intron 30.0%
!! GATTCCTTGCGTTTTAATAT+AGG - chr3_4:65951076-65951095 Msa0514990:intron 30.0%
TGAACCTATATTAAAACGCA+AGG + chr3_4:65951083-65951102 None:intergenic 30.0%
TCAAGAAGAATACTTTCACA+AGG + chr3_4:65951228-65951247 None:intergenic 30.0%
!! GAAAGTATTCTTCTTGAAGT+TGG - chr3_4:65951231-65951250 Msa0514990:intron 30.0%
ACTATGACCATCCAATATAT+TGG - chr3_4:65951261-65951280 Msa0514990:intron 30.0%
TATTCAGCCAATATATTGGA+TGG + chr3_4:65951271-65951290 None:intergenic 30.0%
! ATCACAGCTTTGATAACAAA+TGG + chr3_4:65951717-65951736 None:intergenic 30.0%
TCCTAATCATTCGTAGTTAA+CGG + chr3_4:65951780-65951799 None:intergenic 30.0%
!! CTTCTTCAGTATTGGTATTA+AGG + chr3_4:65951983-65952002 None:intergenic 30.0%
CTTAATACCAATACTGAAGA+AGG - chr3_4:65951981-65952000 Msa0514990:intron 30.0%
TTCAGATAAAATGTCTGTGA+AGG - chr3_4:65952004-65952023 Msa0514990:intron 30.0%
ACAAAATAAACAGCCGTTTA+GGG + chr3_4:65952128-65952147 None:intergenic 30.0%
AACAAAATAAACAGCCGTTT+AGG + chr3_4:65952129-65952148 None:intergenic 30.0%
ATCAGAAACATCAATTACTC+GGG - chr3_4:65952395-65952414 Msa0514990:intron 30.0%
TAACAATGCAATGATACCAT+GGG + chr3_4:65952500-65952519 None:intergenic 30.0%
TTAACAATGCAATGATACCA+TGG + chr3_4:65952501-65952520 None:intergenic 30.0%
TTGTAAATGTTTCAGCTTAC+CGG - chr3_4:65952530-65952549 Msa0514990:intron 30.0%
TCACATCTGGATGATAATTT+CGG + chr3_4:65952564-65952583 None:intergenic 30.0%
AGAAAGCAGATAACTTCAAT+GGG + chr3_4:65952616-65952635 None:intergenic 30.0%
TAGAAAGCAGATAACTTCAA+TGG + chr3_4:65952617-65952636 None:intergenic 30.0%
TCGGAGTTAAAGATTAGAAA+AGG + chr3_4:65952675-65952694 None:intergenic 30.0%
! TTGGTATAATCTAAGACACA+CGG + chr3_4:65952725-65952744 None:intergenic 30.0%
GGTCCATATATGACAAATTT+GGG - chr3_4:65953097-65953116 Msa0514990:intron 30.0%
GTCCATATATGACAAATTTG+GGG - chr3_4:65953098-65953117 Msa0514990:intron 30.0%
AAATTCTCCATAATCTTTGG+AGG + chr3_4:65953184-65953203 None:intergenic 30.0%
TAACTTCAAGAACAACAAAG+AGG + chr3_4:65953743-65953762 None:intergenic 30.0%
ATATTCTTCTTATTCAGCAG+AGG + chr3_4:65953945-65953964 None:intergenic 30.0%
TGCTGAATAAGAAGAATATG+AGG - chr3_4:65953946-65953965 Msa0514990:intron 30.0%
GCTGAATAAGAAGAATATGA+GGG - chr3_4:65953947-65953966 Msa0514990:intron 30.0%
CTGAATAAGAAGAATATGAG+GGG - chr3_4:65953948-65953967 Msa0514990:intron 30.0%
TTCATGACCTTGGTATATAT+AGG - chr3_4:65954156-65954175 Msa0514990:intron 30.0%
GTAACAACCTATATATACCA+AGG + chr3_4:65954166-65954185 None:intergenic 30.0%
TTGTTACTCCTTATAGACAT+AGG - chr3_4:65954179-65954198 Msa0514990:five_prime_UTR 30.0%
!! TCATCTATTGCTTGTTTTCT+TGG - chr3_4:65954244-65954263 Msa0514990:five_prime_UTR 30.0%
!!! ATGTTGTTTTTTGACAGCAT+TGG - chr3_4:65954293-65954312 Msa0514990:five_prime_UTR 30.0%
! ACAGCATTGGATTATATTCT+TGG - chr3_4:65954306-65954325 Msa0514990:five_prime_UTR 30.0%
! TTAGTCAGTGTTATTCATGA+AGG - chr3_4:65954337-65954356 Msa0514990:five_prime_UTR 30.0%
! TAGTCAGTGTTATTCATGAA+GGG - chr3_4:65954338-65954357 Msa0514990:five_prime_UTR 30.0%
CTTATAGAGAGGGAATGAAA+GGG + chr3_4:65948941-65948960 None:intergenic 35.0%
GAAAGAGAAACCTGTGTTAT+AGG + chr3_4:65949053-65949072 None:intergenic 35.0%
TGCATTAAGATAAGAAGCCT+TGG + chr3_4:65949240-65949259 None:intergenic 35.0%
CTCTGGCTGCAAAAAAATTA+AGG + chr3_4:65949422-65949441 None:intergenic 35.0%
!!! CTTAATTTTTTTGCAGCCAG+AGG - chr3_4:65949420-65949439 Msa0514990:CDS 35.0%
!! TCTTGATGATGAAATTCCTC+TGG + chr3_4:65949439-65949458 None:intergenic 35.0%
TAGTACATCAGCTACTCAAT+GGG - chr3_4:65949518-65949537 Msa0514990:CDS 35.0%
!!! ACTTTTTTATGGCTATAGCC+GGG + chr3_4:65949685-65949704 None:intergenic 35.0%
TTGAAAAGAAATATCCGGCA+AGG - chr3_4:65949804-65949823 Msa0514990:CDS 35.0%
TGAAAAGAAATATCCGGCAA+GGG - chr3_4:65949805-65949824 Msa0514990:CDS 35.0%
ATTCAGGGTTTAACCAAAAC+AGG + chr3_4:65949838-65949857 None:intergenic 35.0%
TTAACTCCAGTAGGAATTCA+GGG + chr3_4:65949853-65949872 None:intergenic 35.0%
! TTGTAATTTTGCCCAACCTT+TGG - chr3_4:65949975-65949994 Msa0514990:intron 35.0%
TTATTGGAGTTCCAAAGGTT+GGG + chr3_4:65949989-65950008 None:intergenic 35.0%
TTTATTGGAGTTCCAAAGGT+TGG + chr3_4:65949990-65950009 None:intergenic 35.0%
CTGAAAAATTCCACTTCTCT+TGG + chr3_4:65950053-65950072 None:intergenic 35.0%
! CGCCAAATAGAATTGATTCT+TGG - chr3_4:65950080-65950099 Msa0514990:CDS 35.0%
!! TTAGAAGAGACGATTTGGTT+TGG + chr3_4:65950163-65950182 None:intergenic 35.0%
ATCCATGAAATCGCACAAAT+TGG - chr3_4:65950335-65950354 Msa0514990:intron 35.0%
TACCAATTTGTGCGATTTCA+TGG + chr3_4:65950340-65950359 None:intergenic 35.0%
CAACTCACTATTCAGATGTT+AGG - chr3_4:65950844-65950863 Msa0514990:intron 35.0%
AAAACTGTTCCTACTGAGTA+AGG + chr3_4:65950945-65950964 None:intergenic 35.0%
AGCACTGCAAGAAAAATGAT+TGG + chr3_4:65951005-65951024 None:intergenic 35.0%
TACAAGCAGGATAAGCTTTA+TGG - chr3_4:65951024-65951043 Msa0514990:intron 35.0%
AGCAAAAAAGGTTGAACTTG+GGG + chr3_4:65951053-65951072 None:intergenic 35.0%
GAGCAAAAAAGGTTGAACTT+GGG + chr3_4:65951054-65951073 None:intergenic 35.0%
!!! CAAGTTCAACCTTTTTTGCT+CGG - chr3_4:65951053-65951072 Msa0514990:intron 35.0%
!!! AAGTTCAACCTTTTTTGCTC+GGG - chr3_4:65951054-65951073 Msa0514990:intron 35.0%
!!! TAGAATTTTTTGACACCCCA+AGG + chr3_4:65951330-65951349 None:intergenic 35.0%
AACGCATCAACTAATGATGA+TGG + chr3_4:65951416-65951435 None:intergenic 35.0%
TCTTGACAGAGTTAACTGTT+AGG + chr3_4:65951599-65951618 None:intergenic 35.0%
TCCGTTAACTACGAATGATT+AGG - chr3_4:65951776-65951795 Msa0514990:intron 35.0%
AACTACGAATGATTAGGATG+AGG - chr3_4:65951782-65951801 Msa0514990:intron 35.0%
ACTACGAATGATTAGGATGA+GGG - chr3_4:65951783-65951802 Msa0514990:intron 35.0%
ATCTGAACCTTCTTCAGTAT+TGG + chr3_4:65951991-65952010 None:intergenic 35.0%
TAGCAACAAGCATTATCAAG+TGG + chr3_4:65952081-65952100 None:intergenic 35.0%
CAAAATAAACAGCCGTTTAG+GGG + chr3_4:65952127-65952146 None:intergenic 35.0%
!!! TTGGTTTGGATGTCCTTTTT+TGG + chr3_4:65952157-65952176 None:intergenic 35.0%
TAATCGTCTTGATTGCTCTT+TGG - chr3_4:65952195-65952214 Msa0514990:intron 35.0%
!!! ACGTACAAGGATTCTAGTTT+TGG + chr3_4:65952259-65952278 None:intergenic 35.0%
AAAACTAGAATCCTTGTACG+TGG - chr3_4:65952258-65952277 Msa0514990:intron 35.0%
! TTTGGTAATCAATGCAGGAA+AGG - chr3_4:65952350-65952369 Msa0514990:intron 35.0%
TAATCAATGCAGGAAAGGTT+TGG - chr3_4:65952355-65952374 Msa0514990:intron 35.0%
GATGCTATGTGTGATTTACT+TGG - chr3_4:65952461-65952480 Msa0514990:intron 35.0%
AACAATGCAATGATACCATG+GGG + chr3_4:65952499-65952518 None:intergenic 35.0%
CACATCTGGATGATAATTTC+GGG + chr3_4:65952563-65952582 None:intergenic 35.0%
AATACTCACTTGTTCACATC+TGG + chr3_4:65952577-65952596 None:intergenic 35.0%
GTCCATAGCAATAGTGAAAT+CGG + chr3_4:65952694-65952713 None:intergenic 35.0%
CACTATTGCTATGGACAAAA+TGG - chr3_4:65952698-65952717 Msa0514990:intron 35.0%
ACTAGAAATTATGGCATGAC+AGG + chr3_4:65952836-65952855 None:intergenic 35.0%
TTAAATTTCTCTTCTGCACC+AGG + chr3_4:65952949-65952968 None:intergenic 35.0%
TGGTGCAGAAGAGAAATTTA+AGG - chr3_4:65952948-65952967 Msa0514990:intron 35.0%
TCTTGTCAGATGATGAGAAA+CGG - chr3_4:65953076-65953095 Msa0514990:intron 35.0%
CGGTCCATATATGACAAATT+TGG - chr3_4:65953096-65953115 Msa0514990:intron 35.0%
CTCCCCAAATTTGTCATATA+TGG + chr3_4:65953103-65953122 None:intergenic 35.0%
CATATATGACAAATTTGGGG+AGG - chr3_4:65953101-65953120 Msa0514990:intron 35.0%
! CATAATCTTTGGAGGTAACT+TGG + chr3_4:65953176-65953195 None:intergenic 35.0%
CAAGTTACCTCCAAAGATTA+TGG - chr3_4:65953174-65953193 Msa0514990:intron 35.0%
TGGAAAAGGAGATAGAGATT+AGG - chr3_4:65953397-65953416 Msa0514990:intron 35.0%
TTCCAGAGTTACCTTCATTT+CGG + chr3_4:65953698-65953717 None:intergenic 35.0%
AATCTTGGGGACTACAATTA+AGG - chr3_4:65953833-65953852 Msa0514990:intron 35.0%
TGGATTTGAAAATCCCATCT+GGG - chr3_4:65953877-65953896 Msa0514990:intron 35.0%
!! ACACTTGTTATGGCAAAGAA+AGG - chr3_4:65953915-65953934 Msa0514990:intron 35.0%
AAAACTGATTGAGGAACTCT+CGG - chr3_4:65954028-65954047 Msa0514990:intron 35.0%
CACGAAATATCATCTCATAC+CGG + chr3_4:65954078-65954097 None:intergenic 35.0%
GGTATGAGATGATATTTCGT+GGG - chr3_4:65954077-65954096 Msa0514990:intron 35.0%
TTACTCCTTATAGACATAGG+CGG - chr3_4:65954182-65954201 Msa0514990:five_prime_UTR 35.0%
AGGCAACATTAGTGTAGTGT+AGG - chr3_4:65948859-65948878 Msa0514990:three_prime_UTR 40.0%
GCTTATAGAGAGGGAATGAA+AGG + chr3_4:65948942-65948961 None:intergenic 40.0%
! TAGATGGCAGTTACACCTTT+TGG - chr3_4:65949495-65949514 Msa0514990:CDS 40.0%
GTAGCTGATGTACTACCAAA+AGG + chr3_4:65949513-65949532 None:intergenic 40.0%
GTAGTACATCAGCTACTCAA+TGG - chr3_4:65949517-65949536 Msa0514990:CDS 40.0%
AGTACATCAGCTACTCAATG+GGG - chr3_4:65949519-65949538 Msa0514990:CDS 40.0%
TGATGCAAACTTGGCTATTG+TGG + chr3_4:65949574-65949593 None:intergenic 40.0%
!! GTGTCTTGATGATGCAAACT+TGG + chr3_4:65949583-65949602 None:intergenic 40.0%
TTATCTGTCATATTGTGCCC+CGG - chr3_4:65949664-65949683 Msa0514990:CDS 40.0%
!!! CTTTTTTATGGCTATAGCCG+GGG + chr3_4:65949684-65949703 None:intergenic 40.0%
CAGCTACTATAGCTGACAAT+TGG + chr3_4:65949735-65949754 None:intergenic 40.0%
AGCTATAGTAGCTGTACTTC+TGG - chr3_4:65949741-65949760 Msa0514990:CDS 40.0%
GTTAAACCCTGAATTCCTAC+TGG - chr3_4:65949844-65949863 Msa0514990:CDS 40.0%
CTTAACTCCAGTAGGAATTC+AGG + chr3_4:65949854-65949873 None:intergenic 40.0%
GTTCAGTTGATTGTAGTGAG+TGG - chr3_4:65949903-65949922 Msa0514990:CDS 40.0%
TAGTGAGTGGAAGTGAATGT+TGG - chr3_4:65949916-65949935 Msa0514990:CDS 40.0%
AGTGAGTGGAAGTGAATGTT+GGG - chr3_4:65949917-65949936 Msa0514990:CDS 40.0%
CGAGCAAAAAAGGTTGAACT+TGG + chr3_4:65951055-65951074 None:intergenic 40.0%
ATCAAACTTTGCATCGTCGA+AGG - chr3_4:65951104-65951123 Msa0514990:intron 40.0%
TCAAACTTTGCATCGTCGAA+GGG - chr3_4:65951105-65951124 Msa0514990:intron 40.0%
!!! ATTTTTTGACACCCCAAGGA+CGG + chr3_4:65951326-65951345 None:intergenic 40.0%
AAATCATAGCAGTCAGGGAA+GGG + chr3_4:65951389-65951408 None:intergenic 40.0%
!! GCATCAACTAATGATGATGG+AGG + chr3_4:65951413-65951432 None:intergenic 40.0%
!! TTAACGGACTAAGGCTAATG+TGG + chr3_4:65951764-65951783 None:intergenic 40.0%
!! CATTCGTAGTTAACGGACTA+AGG + chr3_4:65951773-65951792 None:intergenic 40.0%
CAATTACTCGGGTTAATGAG+TGG - chr3_4:65952406-65952425 Msa0514990:intron 40.0%
ACAATGCAATGATACCATGG+GGG + chr3_4:65952498-65952517 None:intergenic 40.0%
GATAACTTCAATGGGAAGTG+AGG + chr3_4:65952608-65952627 None:intergenic 40.0%
CTCCGATTTCACTATTGCTA+TGG - chr3_4:65952689-65952708 Msa0514990:intron 40.0%
AAATGACATGCTGCAAGCAT+TGG + chr3_4:65952744-65952763 None:intergenic 40.0%
CTTCATCTAACAGGCAATTC+AGG + chr3_4:65952790-65952809 None:intergenic 40.0%
GCTAAACGACTTCATCTAAC+AGG + chr3_4:65952799-65952818 None:intergenic 40.0%
ATGACAGGTGAAAATGCACT+TGG + chr3_4:65952821-65952840 None:intergenic 40.0%
ACACAACTGACCCTAATTCA+TGG - chr3_4:65953011-65953030 Msa0514990:intron 40.0%
TCATCTGACAAGACCTGAAA+AGG + chr3_4:65953069-65953088 None:intergenic 40.0%
GCGACTCAAACAGATCAAAA+GGG + chr3_4:65953269-65953288 None:intergenic 40.0%
AGCGACTCAAACAGATCAAA+AGG + chr3_4:65953270-65953289 None:intergenic 40.0%
TCTGTTTGAGTCGCTATTTG+AGG - chr3_4:65953275-65953294 Msa0514990:intron 40.0%
CTGTTTGAGTCGCTATTTGA+GGG - chr3_4:65953276-65953295 Msa0514990:intron 40.0%
TCTTGGAATGGAGCAATGAA+TGG - chr3_4:65953321-65953340 Msa0514990:intron 40.0%
!! TAAAGAAGCTGTTTTCGGAG+TGG - chr3_4:65953377-65953396 Msa0514990:intron 40.0%
TCATCCAGATGTAACACATG+TGG - chr3_4:65953474-65953493 Msa0514990:intron 40.0%
AACAAAGCGGATAAGTCTCA+AGG - chr3_4:65953635-65953654 Msa0514990:CDS 40.0%
CTTCATTTCGGACCCTTAAA+CGG + chr3_4:65953686-65953705 None:intergenic 40.0%
! GAAGGTAACTCTGGAAAGAA+AGG - chr3_4:65953702-65953721 Msa0514990:CDS 40.0%
ATTAAGGTTCCGACTGTAGA+TGG - chr3_4:65953849-65953868 Msa0514990:intron 40.0%
GTGGATTTGAAAATCCCATC+TGG - chr3_4:65953876-65953895 Msa0514990:intron 40.0%
! ACCAGGATCAACACTTGTTA+TGG - chr3_4:65953905-65953924 Msa0514990:intron 40.0%
!!! TCATCGCTGCTCAGTTTTTT+AGG + chr3_4:65954005-65954024 None:intergenic 40.0%
CGATGAGAGAAAACTGATTG+AGG - chr3_4:65954019-65954038 Msa0514990:intron 40.0%
GAAATATCATCTCATACCGG+CGG + chr3_4:65954075-65954094 None:intergenic 40.0%
CGGTATGAGATGATATTTCG+TGG - chr3_4:65954076-65954095 Msa0514990:intron 40.0%
CAAATCCGCCTATGTCTATA+AGG + chr3_4:65954190-65954209 None:intergenic 40.0%
! ACATAGGCGGATTTGAAGAA+AGG - chr3_4:65954195-65954214 Msa0514990:five_prime_UTR 40.0%
CGGATTTGAAGAAAGGACAT+AGG - chr3_4:65954202-65954221 Msa0514990:five_prime_UTR 40.0%
AGAGGGAATGAAAGGGAACT+TGG + chr3_4:65948934-65948953 None:intergenic 45.0%
!! GCACTTATTTTCGGAGCAGA+GGG + chr3_4:65949370-65949389 None:intergenic 45.0%
!! AGCACTTATTTTCGGAGCAG+AGG + chr3_4:65949371-65949390 None:intergenic 45.0%
TGCAAACTTGGCTATTGTGG+TGG + chr3_4:65949571-65949590 None:intergenic 45.0%
! CAAGGGCTTATTGCCTGTTT+TGG - chr3_4:65949822-65949841 Msa0514990:CDS 45.0%
GTGGAAGTGAATGTTGGGAA+TGG - chr3_4:65949922-65949941 Msa0514990:CDS 45.0%
CAGTGAGTTTGGCAGAATCA+CGG - chr3_4:65949945-65949964 Msa0514990:CDS 45.0%
ACTTCTCTTGGCAGTGAGTT+TGG + chr3_4:65950041-65950060 None:intergenic 45.0%
AAACTCACTGCCAAGAGAAG+TGG - chr3_4:65950040-65950059 Msa0514990:intron 45.0%
AACATCGTGTCCTAGATGCA+AGG + chr3_4:65950218-65950237 None:intergenic 45.0%
GTGTTGAGTAGTGCTCCTTT+AGG + chr3_4:65950545-65950564 None:intergenic 45.0%
CCTACTGAGTAAGGATCTGT+TGG + chr3_4:65950936-65950955 None:intergenic 45.0%
CCAACAGATCCTTACTCAGT+AGG - chr3_4:65950933-65950952 Msa0514990:intron 45.0%
TTTCTTGCAGTGCTACAAGC+AGG - chr3_4:65951011-65951030 Msa0514990:intron 45.0%
CAAGGAATCCCGAGCAAAAA+AGG + chr3_4:65951065-65951084 None:intergenic 45.0%
CAAACTTTGCATCGTCGAAG+GGG - chr3_4:65951106-65951125 Msa0514990:intron 45.0%
TCTAATATGTACCCGCATGC+AGG - chr3_4:65951291-65951310 Msa0514990:intron 45.0%
CAAATCATAGCAGTCAGGGA+AGG + chr3_4:65951390-65951409 None:intergenic 45.0%
GAGGCAAATCATAGCAGTCA+GGG + chr3_4:65951394-65951413 None:intergenic 45.0%
CAAGTGGCAGACTTCTTTGA+TGG + chr3_4:65952065-65952084 None:intergenic 45.0%
TAAACAGCCGTTTAGGGGTT+GGG + chr3_4:65952122-65952141 None:intergenic 45.0%
ATAAACAGCCGTTTAGGGGT+TGG + chr3_4:65952123-65952142 None:intergenic 45.0%
CTCTTTGGTATTGTACTGCG+AGG - chr3_4:65952210-65952229 Msa0514990:intron 45.0%
! TTGAGCGGAAGTTTTCCAAG+AGG + chr3_4:65952285-65952304 None:intergenic 45.0%
! TGGTTATGCATTTTCCCCCA+TGG - chr3_4:65952481-65952500 Msa0514990:intron 45.0%
!! GATAATTTCGGGCTAGCTTC+CGG + chr3_4:65952552-65952571 None:intergenic 45.0%
AGTGGGAACAGAGCAAAAGA+CGG + chr3_4:65952644-65952663 None:intergenic 45.0%
GGAAATCAGTAATGCGTACG+AGG - chr3_4:65952969-65952988 Msa0514990:intron 45.0%
TGCGTACGAGGTAAAACTAG+AGG - chr3_4:65952981-65953000 Msa0514990:intron 45.0%
TATGACAAATTTGGGGAGGC+AGG - chr3_4:65953105-65953124 Msa0514990:intron 45.0%
ATGACAAATTTGGGGAGGCA+GGG - chr3_4:65953106-65953125 Msa0514990:intron 45.0%
CTTAAAGGTTCACCGGGATT+TGG - chr3_4:65953129-65953148 Msa0514990:intron 45.0%
!! AGCTGTTTTCGGAGTGGAAA+AGG - chr3_4:65953383-65953402 Msa0514990:intron 45.0%
ATTAGGCGACTAGAGAAGTG+TGG - chr3_4:65953414-65953433 Msa0514990:intron 45.0%
ATGGTTCAGGAGCTAAACCA+GGG - chr3_4:65953445-65953464 Msa0514990:intron 45.0%
CATCTGGATGATTTAGTCCC+TGG + chr3_4:65953465-65953484 None:intergenic 45.0%
TCCAGATGTAACACATGTGG+TGG - chr3_4:65953477-65953496 Msa0514990:intron 45.0%
ACCACCACATGTGTTACATC+TGG + chr3_4:65953481-65953500 None:intergenic 45.0%
ATGTAACACATGTGGTGGTC+AGG - chr3_4:65953482-65953501 Msa0514990:intron 45.0%
TGTAACACATGTGGTGGTCA+GGG - chr3_4:65953483-65953502 Msa0514990:intron 45.0%
ACTCAAACAAGGACTCCGTT+GGG - chr3_4:65953516-65953535 Msa0514990:intron 45.0%
GACTGCTGAAAGATACCCAA+CGG + chr3_4:65953534-65953553 None:intergenic 45.0%
!! ATGACTTGCTCGTCTTGCAA+TGG - chr3_4:65953555-65953574 Msa0514990:intron 45.0%
!! TGACTTGCTCGTCTTGCAAT+GGG - chr3_4:65953556-65953575 Msa0514990:intron 45.0%
!!! TCCGCTTTGTTTTTCTCACC+CGG + chr3_4:65953626-65953645 None:intergenic 45.0%
ATAAGTCTCAAGGTTCCAGC+CGG - chr3_4:65953645-65953664 Msa0514990:CDS 45.0%
TGGATTCTGGTAGCCGTTTA+AGG - chr3_4:65953670-65953689 Msa0514990:CDS 45.0%
GGATTCTGGTAGCCGTTTAA+GGG - chr3_4:65953671-65953690 Msa0514990:CDS 45.0%
CGTTTAAGGGTCCGAAATGA+AGG - chr3_4:65953684-65953703 Msa0514990:CDS 45.0%
GTCCGAAATGAAGGTAACTC+TGG - chr3_4:65953693-65953712 Msa0514990:CDS 45.0%
! GGTAACTCTGGAAAGAAAGG+TGG - chr3_4:65953705-65953724 Msa0514990:exon 45.0%
AGAACAACAAAGAGGTCACC+AGG + chr3_4:65953735-65953754 None:intergenic 45.0%
GTGTCTTCTCGTTTAAGCAC+GGG + chr3_4:65953774-65953793 None:intergenic 45.0%
GGTGTCTTCTCGTTTAAGCA+CGG + chr3_4:65953775-65953794 None:intergenic 45.0%
TCCACCATTCCATCTACAGT+CGG + chr3_4:65953861-65953880 None:intergenic 45.0%
!! GCCATAACAAGTGTTGATCC+TGG + chr3_4:65953909-65953928 None:intergenic 45.0%
GGATGCTTCATTCATGACCT+TGG - chr3_4:65954146-65954165 Msa0514990:intron 45.0%
!! GGGTTCTAGAAAGAGCGACA+AGG - chr3_4:65948839-65948858 Msa0514990:three_prime_UTR 50.0%
GGGAATGAAAGGGAACTTGG+TGG + chr3_4:65948931-65948950 None:intergenic 50.0%
GAAGTTGGAAGGAGAGGATG+AGG + chr3_4:65949008-65949027 None:intergenic 50.0%
GAGAGAGAAGTTGGAAGGAG+AGG + chr3_4:65949014-65949033 None:intergenic 50.0%
CTTGGGAGAGAGAAGTTGGA+AGG + chr3_4:65949019-65949038 None:intergenic 50.0%
ACTGCTTGGGAGAGAGAAGT+TGG + chr3_4:65949023-65949042 None:intergenic 50.0%
! TATAGGCGCTGCTACTGCTT+GGG + chr3_4:65949036-65949055 None:intergenic 50.0%
! TTATAGGCGCTGCTACTGCT+TGG + chr3_4:65949037-65949056 None:intergenic 50.0%
AGTAGCAGCGCCTATAACAC+AGG - chr3_4:65949040-65949059 Msa0514990:three_prime_UTR 50.0%
GGGAATTCGTCCTCAGATTG+TGG - chr3_4:65949539-65949558 Msa0514990:CDS 50.0%
!! CTTGGCTATTGTGGTGGATC+TGG + chr3_4:65949565-65949584 None:intergenic 50.0%
AACAGGCAATAAGCCCTTGC+CGG + chr3_4:65949821-65949840 None:intergenic 50.0%
GTTGGGAATGGCAGTGAGTT+TGG - chr3_4:65949934-65949953 Msa0514990:CDS 50.0%
TCGTGTCCTAGATGCAAGGT+GGG + chr3_4:65950214-65950233 None:intergenic 50.0%
ATCGTGTCCTAGATGCAAGG+TGG + chr3_4:65950215-65950234 None:intergenic 50.0%
GGAGGGTCTTACAAAGTCAC+TGG - chr3_4:65950611-65950630 Msa0514990:intron 50.0%
AGGACTACTACACCGTCCTT+GGG - chr3_4:65951311-65951330 Msa0514990:intron 50.0%
GGAGGCAAATCATAGCAGTC+AGG + chr3_4:65951395-65951414 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGCA+AGG - chr3_4:65951891-65951910 Msa0514990:intron 50.0%
AAACAGCCGTTTAGGGGTTG+GGG + chr3_4:65952121-65952140 None:intergenic 50.0%
ATCCTTGTACGTGGTCCTCT+TGG - chr3_4:65952267-65952286 Msa0514990:intron 50.0%
TTCCAAGAGGACCACGTACA+AGG + chr3_4:65952272-65952291 None:intergenic 50.0%
TGAACTTCGGCAGTCTTGAG+CGG + chr3_4:65952300-65952319 None:intergenic 50.0%
ACCTTATGCTGCAGAGATCC+TGG - chr3_4:65952928-65952947 Msa0514990:intron 50.0%
ACCAGGATCTCTGCAGCATA+AGG + chr3_4:65952932-65952951 None:intergenic 50.0%
AAAGGTTCACCGGGATTTGG+TGG - chr3_4:65953132-65953151 Msa0514990:intron 50.0%
TGAGTCGCTATTTGAGGGCA+TGG - chr3_4:65953281-65953300 Msa0514990:intron 50.0%
! TCGCTATTTGAGGGCATGGA+TGG - chr3_4:65953285-65953304 Msa0514990:intron 50.0%
ATGGTCGCAGCAGACAATCT+TGG - chr3_4:65953304-65953323 Msa0514990:intron 50.0%
CGCAGCAGACAATCTTGGAA+TGG - chr3_4:65953309-65953328 Msa0514990:intron 50.0%
! GAGAAGTGTGGTACTTGCGA+TGG - chr3_4:65953426-65953445 Msa0514990:intron 50.0%
TGTGGTACTTGCGATGGTTC+AGG - chr3_4:65953432-65953451 Msa0514990:intron 50.0%
GATGGTTCAGGAGCTAAACC+AGG - chr3_4:65953444-65953463 Msa0514990:intron 50.0%
!! GACGGGTTGTCACTCAAACA+AGG - chr3_4:65953505-65953524 Msa0514990:intron 50.0%
CACTCAAACAAGGACTCCGT+TGG - chr3_4:65953515-65953534 Msa0514990:intron 50.0%
ACCCCTTGCAGTACATGTTC+TGG - chr3_4:65953594-65953613 Msa0514990:intron 50.0%
CCCAGAACATGTACTGCAAG+GGG + chr3_4:65953598-65953617 None:intergenic 50.0%
CCCCTTGCAGTACATGTTCT+GGG - chr3_4:65953595-65953614 Msa0514990:intron 50.0%
CCCCAGAACATGTACTGCAA+GGG + chr3_4:65953599-65953618 None:intergenic 50.0%
CCCTTGCAGTACATGTTCTG+GGG - chr3_4:65953596-65953615 Msa0514990:intron 50.0%
TCCCCAGAACATGTACTGCA+AGG + chr3_4:65953600-65953619 None:intergenic 50.0%
!! TGCAGTACATGTTCTGGGGA+TGG - chr3_4:65953600-65953619 Msa0514990:intron 50.0%
GCCGGGTGAGAAAAACAAAG+CGG - chr3_4:65953622-65953641 Msa0514990:CDS 50.0%
GGAAAGAAAGGTGGTTCTCC+TGG - chr3_4:65953714-65953733 Msa0514990:exon 50.0%
CTCGTTTAAGCACGGGATCA+GGG + chr3_4:65953767-65953786 None:intergenic 50.0%
TCTCGTTTAAGCACGGGATC+AGG + chr3_4:65953768-65953787 None:intergenic 50.0%
GGTTCCGACTGTAGATGGAA+TGG - chr3_4:65953854-65953873 Msa0514990:intron 50.0%
TCCGACTGTAGATGGAATGG+TGG - chr3_4:65953857-65953876 Msa0514990:intron 50.0%
ATCCTGGTTGTGTCCCAGAT+GGG + chr3_4:65953893-65953912 None:intergenic 50.0%
GAACTCTCGGAGTTGAGCAA+AGG - chr3_4:65954041-65954060 Msa0514990:intron 50.0%
GGAAGGAGAGGATGAGGAAG+TGG + chr3_4:65949002-65949021 None:intergenic 55.0%
GTGGATCTGGCCACAATCTG+AGG + chr3_4:65949552-65949571 None:intergenic 55.0%
CTCTTGCCCACCTTGCATCT+AGG - chr3_4:65950205-65950224 Msa0514990:intron 55.0%
TGCATCGTCGAAGGGGATCA+AGG - chr3_4:65951113-65951132 Msa0514990:intron 55.0%
GGTGTAGTAGTCCTGCATGC+GGG + chr3_4:65951305-65951324 None:intergenic 55.0%
CGGTGTAGTAGTCCTGCATG+CGG + chr3_4:65951306-65951325 None:intergenic 55.0%
CAGGACTACTACACCGTCCT+TGG - chr3_4:65951310-65951329 Msa0514990:intron 55.0%
GGACTACTACACCGTCCTTG+GGG - chr3_4:65951312-65951331 Msa0514990:intron 55.0%
AACAGCCGTTTAGGGGTTGG+GGG + chr3_4:65952120-65952139 None:intergenic 55.0%
TTTGGGGAGGCAGGGCTTAA+AGG - chr3_4:65953114-65953133 Msa0514990:intron 55.0%
GGCAGGGCTTAAAGGTTCAC+CGG - chr3_4:65953122-65953141 Msa0514990:intron 55.0%
GCAGGGCTTAAAGGTTCACC+GGG - chr3_4:65953123-65953142 Msa0514990:intron 55.0%
ACACATGTGGTGGTCAGGGA+CGG - chr3_4:65953487-65953506 Msa0514990:intron 55.0%
TGCTCGTCTTGCAATGGGAC+TGG - chr3_4:65953561-65953580 Msa0514990:intron 55.0%
!! GTACATGTTCTGGGGATGGC+CGG - chr3_4:65953604-65953623 Msa0514990:intron 55.0%
!! TACATGTTCTGGGGATGGCC+GGG - chr3_4:65953605-65953624 Msa0514990:intron 55.0%
ACGGCTACCAGAATCCACAC+CGG + chr3_4:65953667-65953686 None:intergenic 55.0%
! ATCCCATCTGGGACACAACC+AGG - chr3_4:65953888-65953907 Msa0514990:intron 55.0%
GATCCTGGTTGTGTCCCAGA+TGG + chr3_4:65953894-65953913 None:intergenic 55.0%
ACCCTCCCCCAACCCCTAAA+CGG - chr3_4:65952112-65952131 Msa0514990:CDS 60.0%
!! GGTTCACCGGGATTTGGTGG+AGG - chr3_4:65953135-65953154 Msa0514990:intron 60.0%
!! ACCGGGATTTGGTGGAGGCA+TGG - chr3_4:65953140-65953159 Msa0514990:intron 60.0%
CCCATGCCTCCACCAAATCC+CGG + chr3_4:65953144-65953163 None:intergenic 60.0%
!! CCGGGATTTGGTGGAGGCAT+GGG - chr3_4:65953141-65953160 Msa0514990:intron 60.0%
!! CGGGATTTGGTGGAGGCATG+GGG - chr3_4:65953142-65953161 Msa0514990:intron 60.0%
!! GGGATTTGGTGGAGGCATGG+GGG - chr3_4:65953143-65953162 Msa0514990:intron 60.0%
CACATGTGGTGGTCAGGGAC+GGG - chr3_4:65953488-65953507 Msa0514990:intron 60.0%
TCTCAAGGTTCCAGCCGGTG+TGG - chr3_4:65953650-65953669 Msa0514990:CDS 60.0%
GTTCCAGCCGGTGTGGATTC+TGG - chr3_4:65953657-65953676 Msa0514990:CDS 60.0%
CTACCAGAATCCACACCGGC+TGG + chr3_4:65953663-65953682 None:intergenic 60.0%
AGCAAAGGCAAGACTGCCGC+CGG - chr3_4:65954056-65954075 Msa0514990:intron 60.0%
GCAAGGTGGGCAAGAGAGCC+AGG + chr3_4:65950201-65950220 None:intergenic 65.0%
GCCGTTTAGGGGTTGGGGGA+GGG + chr3_4:65952116-65952135 None:intergenic 65.0%
AGCCGTTTAGGGGTTGGGGG+AGG + chr3_4:65952117-65952136 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 65948830 65954390 65948830 ID=Msa0514990;Name=Msa0514990
chr3_4 mRNA 65948830 65954390 65948830 ID=Msa0514990-mRNA-1;Parent=Msa0514990;Name=Msa0514990-mRNA-1;_AED=0.05;_eAED=0.05;_QI=294|1|1|1|0.85|0.75|8|302|438
chr3_4 exon 65948830 65949965 65948830 ID=Msa0514990-mRNA-1:exon:16961;Parent=Msa0514990-mRNA-1
chr3_4 exon 65950056 65950145 65950056 ID=Msa0514990-mRNA-1:exon:16960;Parent=Msa0514990-mRNA-1
chr3_4 exon 65950230 65950278 65950230 ID=Msa0514990-mRNA-1:exon:16959;Parent=Msa0514990-mRNA-1
chr3_4 exon 65950633 65950675 65950633 ID=Msa0514990-mRNA-1:exon:16958;Parent=Msa0514990-mRNA-1
chr3_4 exon 65951850 65951907 65951850 ID=Msa0514990-mRNA-1:exon:16957;Parent=Msa0514990-mRNA-1
chr3_4 exon 65952064 65952199 65952064 ID=Msa0514990-mRNA-1:exon:16956;Parent=Msa0514990-mRNA-1
chr3_4 exon 65953616 65953784 65953616 ID=Msa0514990-mRNA-1:exon:16955;Parent=Msa0514990-mRNA-1
chr3_4 exon 65954159 65954390 65954159 ID=Msa0514990-mRNA-1:exon:16954;Parent=Msa0514990-mRNA-1
chr3_4 five_prime_UTR 65954159 65954390 65954159 ID=Msa0514990-mRNA-1:five_prime_utr;Parent=Msa0514990-mRNA-1
chr3_4 five_prime_UTR 65953723 65953784 65953723 ID=Msa0514990-mRNA-1:five_prime_utr;Parent=Msa0514990-mRNA-1
chr3_4 CDS 65953616 65953722 65953616 ID=Msa0514990-mRNA-1:cds;Parent=Msa0514990-mRNA-1
chr3_4 CDS 65952064 65952199 65952064 ID=Msa0514990-mRNA-1:cds;Parent=Msa0514990-mRNA-1
chr3_4 CDS 65951850 65951907 65951850 ID=Msa0514990-mRNA-1:cds;Parent=Msa0514990-mRNA-1
chr3_4 CDS 65950633 65950675 65950633 ID=Msa0514990-mRNA-1:cds;Parent=Msa0514990-mRNA-1
chr3_4 CDS 65950230 65950278 65950230 ID=Msa0514990-mRNA-1:cds;Parent=Msa0514990-mRNA-1
chr3_4 CDS 65950056 65950145 65950056 ID=Msa0514990-mRNA-1:cds;Parent=Msa0514990-mRNA-1
chr3_4 CDS 65949132 65949965 65949132 ID=Msa0514990-mRNA-1:cds;Parent=Msa0514990-mRNA-1
chr3_4 three_prime_UTR 65948830 65949131 65948830 ID=Msa0514990-mRNA-1:three_prime_utr;Parent=Msa0514990-mRNA-1
Gene Sequence

>Msa0514990

ATGGCAGTTACACCTTTTGGTAGTACATCAGCTACTCAATGGGGAATTCGTCCTCAGATTGTGGCCAGATCCACCACAATAGCCAAGTTTGCATCATCAAGACACAATGCTACAAGCAGGATAAGCTTTATGGCTGCCCCAAGTTCAACCTTTTTTGCTCGGGATTCCTTGCGTTTTAATATAGGTTCACATCAAACTTTGCATCGTCGAAGGGGATCAAGGTTGATAGTTAGAGCAGATGCAGACTACTACACCGTCCTTGGGGTGTCAAAAAATTCTACTAAATCTGAAATTAAGACTGCTTACCGGAAGCTAGCCCGAAATTATCATCCAGATGTGAACAAAGATCCTGGTGCAGAAGAGAAATTTAAGGAAATCAGTAATGCGTACGAGGTCTTGTCAGATGATGAGAAACGGTCCATATATGACAAATTTGGGGAGGCAGGGCTTAAAGGTTCACCGGGATTTGGTGGAGGCATGGGGGATTTCAGCAACCCTTTTGATCTGTTTGAGTCGCTATTTGAGGGCATGGATGGTCGCAGCAGACAATCTTGGAATGGAGCAATGAATGGCGAAGATGAGTATTACAGTCTTGTTTTGAACTTTAAAGAAGCTGTTTTCGGAGTGGAAAAGGAGATAGAGATTAGGCGACTAGAGAAGTGTGGTACTTGCGATGGTTCAGGAGCTAAACCAGGGACTAAATCATCCAGATGTAACACATGTGGTGGTCAGGGACGGGTTGTCACTCAAACAAGGACTCCGTTGGGTATCTTTCAGCAGTCTATGACTTGCTCGTCTTGCAATGGGACTGGAGAAACTCGAACCCCTTGCAGTACATGTTCTGGGGATGGCCGGGTGAGAAAAACAAAGCGGATAAGTCTCAAGGTTCCAGCCGGTGTGGATTCTGGTAGCCGTTTAAGGGTCCGAAATGAAGGTAACTCTGGAAAGAAAGGTGGTTCTCCTGGTGACCTCTTTGTTGTTCTTGAAGTTATCCCTGATCCCGTGCTTAAACGAGAAGACACCAACATTTTATATTCTTGTAAAGTGTCTTATATTGATGCAATCTTGGGGACTACAATTAAGGTTCCGACTGTAGATGGAATGGTGGATTTGAAAATCCCATCTGGGACACAACCAGGATCAACACTTGTTATGGCAAAGAAAGGTGTTCCTCTGCTGAATAAGAAGAATATGAGGGGCGATCAATTCGTTCGAGTGCAAGTTGAGATTCCTAAAAAACTGAGCAGCGATGAGAGAAAACTGATTGAGGAACTCTCGGAGTTGAGCAAAGGCAAGACTGCCGCCGGTATGAGATGA
Protein sequence

>Msa0514990

MAVTPFGSTSATQWGIRPQIVARSTTIAKFASSRHNATSRISFMAAPSSTFFARDSLRFNIGSHQTLHRRRGSRLIVRADADYYTVLGVSKNSTKSEIKTAYRKLARNYHPDVNKDPGAEEKFKEISNAYEVLSDDEKRSIYDKFGEAGLKGSPGFGGGMGDFSNPFDLFESLFEGMDGRSRQSWNGAMNGEDEYYSLVLNFKEAVFGVEKEIEIRRLEKCGTCDGSGAKPGTKSSRCNTCGGQGRVVTQTRTPLGIFQQSMTCSSCNGTGETRTPCSTCSGDGRVRKTKRISLKVPAGVDSGSRLRVRNEGNSGKKGGSPGDLFVVLEVIPDPVLKREDTNILYSCKVSYIDAILGTTIKVPTVDGMVDLKIPSGTQPGSTLVMAKKGVPLLNKKNMRGDQFVRVQVEIPKKLSSDERKLIEELSELSKGKTAAGMR*