AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0162810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0162810 MtrunA17_Chr1g0177751 96.096 666 8 4 1 665 1 649 0.0 1314
Msa0162810 MtrunA17_Chr7g0267481 63.752 709 164 24 1 665 1 660 0.0 775
Msa0162810 MtrunA17_Chr4g0025521 45.745 752 280 29 1 665 1 711 2.74e-161 480
Msa0162810 MtrunA17_Chr1g0155681 52.322 323 119 6 142 454 148 445 4.19e-96 308
Msa0162810 MtrunA17_Chr3g0141941 51.623 308 117 7 150 450 148 430 3.85e-91 292
Msa0162810 MtrunA17_Chr5g0403251 44.628 363 160 7 153 492 330 674 1.75e-84 281
Msa0162810 MtrunA17_Chr8g0373801 50.492 305 116 5 157 449 384 665 4.26e-83 279
Msa0162810 MtrunA17_Chr8g0387321 50.709 282 116 4 161 439 185 446 9.92e-76 254
Msa0162810 MtrunA17_Chr4g0028701 42.424 330 118 7 153 434 237 542 2.62e-69 238
Msa0162810 MtrunA17_Chr3g0141931 45.070 284 122 5 160 435 164 421 4.20e-68 229
Msa0162810 MtrunA17_Chr4g0008591 39.828 349 145 8 156 485 191 493 1.60e-66 229
Msa0162810 MtrunA17_Chr7g0240371 42.947 319 128 9 153 458 129 406 5.29e-64 220
Msa0162810 MtrunA17_Chr2g0327021 38.690 336 166 8 112 434 203 511 3.44e-62 218
Msa0162810 MtrunA17_Chr1g0151681 33.445 299 155 6 162 448 244 510 3.51e-45 169
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0162810 AT2G35940.3 49.335 752 222 25 1 665 1 680 0.0 548
Msa0162810 AT2G35940.1 49.335 752 222 25 1 665 1 680 0.0 548
Msa0162810 AT2G35940.2 49.335 752 222 25 1 665 1 680 0.0 548
Msa0162810 AT2G16400.1 51.456 309 115 5 144 450 97 372 3.29e-93 297
Msa0162810 AT4G34610.2 49.263 339 118 8 124 444 94 396 1.96e-88 286
Msa0162810 AT4G34610.4 49.263 339 118 8 124 444 94 396 1.96e-88 286
Msa0162810 AT4G34610.3 49.263 339 118 8 124 444 94 396 1.96e-88 286
Msa0162810 AT4G34610.1 49.263 339 118 8 124 444 94 396 1.96e-88 286
Msa0162810 AT1G75410.1 50.163 307 123 6 155 457 161 441 1.40e-87 283
Msa0162810 AT1G75410.2 50.163 307 123 6 155 457 161 441 1.40e-87 283
Msa0162810 AT1G19700.1 53.767 292 106 8 152 436 156 425 5.15e-87 283
Msa0162810 AT1G19700.3 53.767 292 106 8 152 436 156 425 5.15e-87 283
Msa0162810 AT1G19700.5 53.767 292 106 8 152 436 156 425 5.15e-87 283
Msa0162810 AT1G19700.4 53.767 292 106 8 152 436 156 425 5.15e-87 283
Msa0162810 AT1G19700.2 53.767 292 106 8 152 436 156 425 5.15e-87 283
Msa0162810 AT2G27220.1 45.125 359 138 9 163 511 78 387 5.62e-81 263
Msa0162810 AT2G27220.3 45.125 359 138 9 163 511 78 387 5.62e-81 263
Msa0162810 AT2G27220.2 42.971 377 138 10 163 511 78 405 5.34e-77 253
Msa0162810 AT4G36870.2 47.588 311 126 6 161 458 312 598 2.64e-76 259
Msa0162810 AT4G36870.1 47.588 311 126 6 161 458 312 598 2.64e-76 259
Msa0162810 AT2G23760.2 48.944 284 112 5 155 429 232 491 5.88e-74 250
Msa0162810 AT2G23760.1 48.944 284 112 5 155 429 232 491 5.88e-74 250
Msa0162810 AT2G23760.3 48.944 284 112 5 155 429 232 491 5.88e-74 250
Msa0162810 AT2G23760.4 45.794 321 119 8 155 429 232 543 8.68e-71 243
Msa0162810 AT1G75410.3 50.388 258 98 6 156 409 162 393 7.60e-70 233
Msa0162810 AT5G41410.1 43.599 289 132 4 164 438 196 467 9.36e-69 236
Msa0162810 AT1G75430.1 40.065 307 148 8 155 453 10 288 6.77e-61 205
Msa0162810 AT4G36870.4 46.332 259 106 5 161 410 312 546 5.34e-60 211
Msa0162810 AT5G02030.1 40.525 343 147 8 100 432 123 418 1.13e-59 210
Msa0162810 AT4G36870.3 45.914 257 106 5 161 408 312 544 8.84e-59 207
Msa0162810 AT4G32980.1 35.542 332 163 9 126 441 154 450 8.51e-51 184
Msa0162810 AT4G32980.2 35.542 332 163 9 126 441 154 450 8.51e-51 184
Msa0162810 AT2G27990.1 35.484 341 158 8 107 434 205 496 1.35e-48 180
Msa0162810 AT1G75430.2 37.872 235 129 7 155 381 10 235 2.78e-36 138
Msa0162810 AT2G27990.2 30.357 280 148 7 107 373 205 450 4.30e-26 112

Find 205 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCACGCGCCGCTGAATT+AGG 0.123053 1_4:+40333500 None:intergenic
GCTTCAAACGGCTGTGTTTC+GGG 0.133801 1_4:-40333386 Msa0162810:CDS
GAACAAATTTCAATGAAATT+TGG 0.179649 1_4:-40330413 Msa0162810:CDS
TCTTATTCGCAGCTCTAATT+TGG 0.208590 1_4:+40331468 None:intergenic
CCTCATTGTGACACATTATC+AGG 0.219156 1_4:-40330224 Msa0162810:CDS
TGCTTCAAACGGCTGTGTTT+CGG 0.238102 1_4:-40333387 Msa0162810:CDS
GTGGTGGAGGGAAGTGTTGC+CGG 0.239922 1_4:+40333670 None:intergenic
GATGAAGTTGTTAATGTTAA+TGG 0.243321 1_4:-40333308 Msa0162810:CDS
TAAAAGAAAGTGGTAATAAT+TGG 0.245416 1_4:+40329524 None:intergenic
TTCTTCCCAGTTGAATGTTT+TGG 0.246221 1_4:+40330177 None:intergenic
GAAATCTATGTGTTTACTTT+GGG 0.248997 1_4:-40329815 Msa0162810:three_prime_UTR
CATAGGGATTTGAAAGTATA+TGG 0.277303 1_4:-40329696 Msa0162810:three_prime_UTR
TAAATGCTCGAGTTCGTCTT+TGG 0.292125 1_4:-40330796 Msa0162810:CDS
AATTGTGCGGCAAACCTCTT+TGG 0.296812 1_4:+40330083 None:intergenic
TAATGTTAATGGTGGGATTA+AGG 0.300957 1_4:-40333297 Msa0162810:CDS
TAGAGCTGCGAATAAGAGTT+TGG 0.301506 1_4:-40331462 Msa0162810:CDS
ACTAATTTCATTGCTGGTTT+CGG 0.310210 1_4:-40330344 Msa0162810:CDS
AACCAAACTAATTTCATTGC+TGG 0.316269 1_4:-40330350 Msa0162810:CDS
AACCAGCAATGAAATTAGTT+TGG 0.317050 1_4:+40330348 None:intergenic
CCGGCGTGTGGCGGCGGCTG+CGG 0.320508 1_4:+40333728 None:intergenic
ATTATTAGTTGTTGTTTCAT+TGG 0.321824 1_4:+40330436 None:intergenic
CTGTTTCTGTTCTTCGTGCT+TGG 0.327008 1_4:-40331295 Msa0162810:CDS
TCTGGTGTTGTTGGTGGTGG+AGG 0.335542 1_4:+40333657 None:intergenic
TGAAATCTATGTGTTTACTT+TGG 0.342029 1_4:-40329816 Msa0162810:three_prime_UTR
ATATGGTACAGGTTTCAAAT+TGG 0.342374 1_4:-40330823 Msa0162810:intron
CTTCACGCGCCGCTGAATTA+GGG 0.345703 1_4:+40333501 None:intergenic
ACAAAGAGCTATTCAACAAT+TGG 0.347219 1_4:-40331369 Msa0162810:CDS
GCCAAACCAAAACATTCAAC+TGG 0.348082 1_4:-40330183 Msa0162810:CDS
TGGTGGAGGGAAGTGTTGCC+GGG 0.348095 1_4:+40333671 None:intergenic
GTGAATGTTAGAAACAATTC+AGG 0.352767 1_4:-40330551 Msa0162810:CDS
TTTGAACAAGTTGCAGGAAT+TGG 0.356194 1_4:-40331569 Msa0162810:CDS
TCCTCGTTTGAACAAGTTGC+AGG 0.356397 1_4:-40331575 Msa0162810:CDS
TAGAGATGGTTATTGTTTCA+TGG 0.358531 1_4:-40330375 Msa0162810:CDS
GGAAGTGTTGCCGGGGTGAT+TGG 0.360547 1_4:+40333679 None:intergenic
TTGTTTGGAATTGAAACTTT+TGG 0.360991 1_4:+40330622 None:intergenic
CTTATTTATGCCACAAAATC+CGG 0.365359 1_4:+40330056 None:intergenic
GTTGGTGGTGGTGATGGAAA+TGG 0.367432 1_4:-40333194 Msa0162810:CDS
GGAACTCTTTCTTGTGGAGT+TGG 0.373552 1_4:+40330662 None:intergenic
AACCATAGGAATGTCTTGTT+TGG 0.375205 1_4:+40330607 None:intergenic
TTTCTAACATTCACACCAAT+AGG 0.376813 1_4:+40330560 None:intergenic
ACACCATCAACTTCACCTAT+TGG 0.384849 1_4:-40330575 Msa0162810:CDS
ATTAGCGAAACAAATGAGTT+TGG 0.384850 1_4:-40330146 Msa0162810:CDS
TGGCGGCGGCTGCGGCGCGT+CGG 0.387133 1_4:+40333736 None:intergenic
CTTTCGGGCAATCCTCTTTG+AGG 0.389055 1_4:+40331320 None:intergenic
TGTTTAAAAGATGCAATTAC+CGG 0.390768 1_4:-40331491 Msa0162810:CDS
TGGAGATTGTTTGTAGGGCT+AGG 0.390769 1_4:+40331525 None:intergenic
CAAAACAAACAGGACTTACT+AGG 0.391251 1_4:-40330959 Msa0162810:CDS
TTCTCTTAAAGCAGGGAATC+TGG 0.394820 1_4:-40329878 Msa0162810:three_prime_UTR
GGTTCTGTTGGTGGTGGTGA+TGG 0.395350 1_4:-40333200 Msa0162810:CDS
TTATATATATGATCTATGTT+TGG 0.396100 1_4:+40334964 None:intergenic
TCATGGTTCCTCGTTCGCTT+TGG 0.399272 1_4:+40330488 None:intergenic
CATGAGGTTTCTGCTTTGCA+TGG 0.403905 1_4:-40333566 Msa0162810:CDS
GAATTTGATTATTCTAGTAT+AGG 0.405788 1_4:-40329757 Msa0162810:three_prime_UTR
AAGAACAGAAACAGATCTTT+CGG 0.408106 1_4:+40331304 None:intergenic
GGAGAAGGTGGTTCTGTTGG+TGG 0.408233 1_4:-40333209 Msa0162810:CDS
TTCAGCTTCACGGAACTTGA+TGG 0.410535 1_4:-40330527 Msa0162810:CDS
GTTTGCCGCACAATTGTTAC+CGG 0.411095 1_4:-40330075 Msa0162810:CDS
TTGGATTCTGTTTCCGAGGT+TGG 0.416477 1_4:+40330641 None:intergenic
TCATTGGACTTCACATGATT+CGG 0.418133 1_4:+40330452 None:intergenic
CATTCAACTGGGAAGAAGAT+TGG 0.418190 1_4:-40330171 Msa0162810:CDS
AGGAAATCACCATCTGCATT+TGG 0.421394 1_4:+40331594 None:intergenic
GCCGCTGAATTAGGGTCGGC+GGG 0.424159 1_4:+40333509 None:intergenic
TGAAGCCACACGCGCTACTC+AGG 0.424234 1_4:-40333483 Msa0162810:CDS
AGCTTACATGCTCAAGGGTC+AGG 0.425924 1_4:-40333449 Msa0162810:CDS
AGTTCTGGTGTTGTTGGTGG+TGG 0.426204 1_4:+40333654 None:intergenic
CGTGTTCCCATTGGTGGGTC+GGG 0.428031 1_4:-40333416 Msa0162810:CDS
TTATATCATAAAGTTTCAAT+TGG 0.431070 1_4:-40329624 Msa0162810:three_prime_UTR
AGTGGAGAAGGTGGTTCTGT+TGG 0.435026 1_4:-40333212 Msa0162810:CDS
ATTGCTTGGAGATTGTTTGT+AGG 0.441182 1_4:+40331519 None:intergenic
TTGGGAGAAGATGATAGCTT+TGG 0.441809 1_4:-40331443 Msa0162810:CDS
CATGTGTTTGTCTGAATCCT+TGG 0.446993 1_4:+40330986 None:intergenic
CCGCAGCCGCCGCCACACGC+CGG 0.448334 1_4:-40333728 Msa0162810:CDS
GAATCTTCAACTGCGGTTAG+TGG 0.448461 1_4:-40333230 Msa0162810:CDS
CACATGCTTGCAAAACAAAC+AGG 0.449703 1_4:-40330969 Msa0162810:CDS
CTGGTGTTGTTGGTGGTGGA+GGG 0.450438 1_4:+40333658 None:intergenic
AGAGCTGCGAATAAGAGTTT+GGG 0.451616 1_4:-40331461 Msa0162810:CDS
AGCTTTGGTGGCAAAATTGA+AGG 0.452290 1_4:-40331428 Msa0162810:CDS
AATCTTCCGATTTCCTCCAT+TGG 0.452740 1_4:+40330314 None:intergenic
GAACTCAAATGGTTCTATGC+AGG 0.455814 1_4:+40329727 None:intergenic
AGAACAGAAACAGATCTTTC+GGG 0.455936 1_4:+40331305 None:intergenic
TTGGTGGTGGTGATGGAAAT+GGG 0.457024 1_4:-40333193 Msa0162810:CDS
GAGGTCTCCAAGCATTATGA+TGG 0.458928 1_4:+40331339 None:intergenic
TTGCTTGGAGATTGTTTGTA+GGG 0.461175 1_4:+40331520 None:intergenic
TCACGCGCCACCACAGTTTG+TGG 0.464248 1_4:-40333627 Msa0162810:CDS
AGAGATGGTTATTGTTTCAT+GGG 0.464621 1_4:-40330374 Msa0162810:CDS
GGAGAAGATGATAGCTTTGG+TGG 0.464797 1_4:-40331440 Msa0162810:CDS
AATGGTGTTTCACTCACTCT+TGG 0.469626 1_4:-40330251 Msa0162810:CDS
TTTGCTTGATTTGTTGTCCT+CGG 0.470961 1_4:+40330715 None:intergenic
CACGCGCCACCACAGTTTGT+GGG 0.472024 1_4:-40333626 Msa0162810:CDS
ATGTACATTTCCTCCACCAT+TGG 0.475080 1_4:+40330770 None:intergenic
AGGTTACCGGCGTGTGGCGG+CGG 0.475653 1_4:+40333722 None:intergenic
GGAGATTGTTTGTAGGGCTA+GGG 0.477123 1_4:+40331526 None:intergenic
GCGTGTTCCCATTGGTGGGT+CGG 0.478334 1_4:-40333417 Msa0162810:CDS
CAAAGAGCTATTCAACAATT+GGG 0.478974 1_4:-40331368 Msa0162810:CDS
GAGATAAGTTCTGGTGTTGT+TGG 0.480326 1_4:+40333648 None:intergenic
CAATATCCAATGGAGGAAAT+CGG 0.481438 1_4:-40330320 Msa0162810:CDS
CATAAAACATATATTCTCAA+TGG 0.482468 1_4:+40329581 None:intergenic
TGGCATAAATAAGACATTGA+AGG 0.484822 1_4:-40330046 Msa0162810:exon
GACGAACCCGACCCACCAAT+GGG 0.487772 1_4:+40333410 None:intergenic
ACATAGATCATATATATAAG+AGG 0.491525 1_4:-40334960 Msa0162810:intron
GACGCGCGTGTTCCCATTGG+TGG 0.492130 1_4:-40333422 Msa0162810:CDS
TCGGTGATTGAAGAATTTCA+TGG 0.493060 1_4:+40330471 None:intergenic
TTGAGTTCTTAGATAGCATA+GGG 0.494340 1_4:-40329712 Msa0162810:three_prime_UTR
GAAGGTGGTTCTGTTGGTGG+TGG 0.495223 1_4:-40333206 Msa0162810:CDS
ATGCTATCTAAGAACTCAAA+TGG 0.497030 1_4:+40329716 None:intergenic
AAAATATGAAAATGTAATTG+AGG 0.497842 1_4:+40335447 None:intergenic
GTGGCAAAATTGAAGGGTCT+AGG 0.499962 1_4:-40331421 Msa0162810:CDS
TTGTAGGGCTAGGGCAGTGT+AGG 0.500467 1_4:+40331535 None:intergenic
GATTTGAAAGTATATGGTTG+AGG 0.502878 1_4:-40329690 Msa0162810:three_prime_UTR
AAGAAACACAATCAATGCTA+TGG 0.507673 1_4:+40329853 None:intergenic
GAATGATCCATCATAATGCT+TGG 0.508715 1_4:-40331346 Msa0162810:CDS
TTCCAAACAAGACATTCCTA+TGG 0.509814 1_4:-40330609 Msa0162810:CDS
CTGATTGTTCTGCCGAGAGC+GGG 0.510732 1_4:+40333600 None:intergenic
AACTCAAATGGTTCTATGCA+GGG 0.514516 1_4:+40329728 None:intergenic
AATGTACATGGAAGAGATGA+AGG 0.518111 1_4:-40330756 Msa0162810:CDS
CATAATAATTCAGAAATCCA+AGG 0.518498 1_4:-40333818 Msa0162810:CDS
CAATTCAGGATTCAGCTTCA+CGG 0.521074 1_4:-40330537 Msa0162810:CDS
GAAGCCACACGCGCTACTCA+GGG 0.521534 1_4:-40333482 Msa0162810:CDS
ACGCGCCACCACAGTTTGTG+GGG 0.522432 1_4:-40333625 Msa0162810:CDS
TTGTAGTGTATAAAGAAAGA+AGG 0.523070 1_4:-40329779 Msa0162810:three_prime_UTR
CGCCGCTGAATTAGGGTCGG+CGG 0.525952 1_4:+40333508 None:intergenic
AGATTATACAAATGAGGAAA+CGG 0.528279 1_4:-40330018 Msa0162810:three_prime_UTR
TCATTAAGCTTACATGCTCA+AGG 0.530266 1_4:-40333455 Msa0162810:CDS
TCATGAAAATGAGTGTTTGA+AGG 0.530375 1_4:+40333783 None:intergenic
AAATCTATGTGTTTACTTTG+GGG 0.532090 1_4:-40329814 Msa0162810:three_prime_UTR
AACTTTCAGTTGCAAGTGGA+AGG 0.533964 1_4:-40335004 Msa0162810:intron
CAATTTACATCACAATCTGC+AGG 0.534042 1_4:-40334686 Msa0162810:intron
AGACGAACCCGACCCACCAA+TGG 0.537440 1_4:+40333409 None:intergenic
ATGTGCGCTTCTCTTAAAGC+AGG 0.537510 1_4:-40329886 Msa0162810:three_prime_UTR
GGCATAAATAAGACATTGAA+GGG 0.538304 1_4:-40330045 Msa0162810:exon
ATGTGTTTGTCTGAATCCTT+GGG 0.538305 1_4:+40330987 None:intergenic
ATAAGTTCTGGTGTTGTTGG+TGG 0.538740 1_4:+40333651 None:intergenic
AACAGGACTTACTAGGAGCC+AGG 0.541927 1_4:-40330952 Msa0162810:intron
AGAAGCGCACATTTACATGT+TGG 0.543348 1_4:+40329897 None:intergenic
GGAAATAGATTATACAAATG+AGG 0.545128 1_4:-40330024 Msa0162810:three_prime_UTR
TCAACTGCGGTTAGTGGAGA+AGG 0.547613 1_4:-40333224 Msa0162810:CDS
TTATTATTACCTGAAAACCT+TGG 0.548405 1_4:+40330272 None:intergenic
ATTCGCAGCTCTAATTTGGC+CGG 0.548463 1_4:+40331472 None:intergenic
GTTAATTAACATGCTTGATG+AGG 0.549695 1_4:-40333111 Msa0162810:intron
TCGGGTTCGTCTGCTTCAAA+CGG 0.552442 1_4:-40333398 Msa0162810:CDS
CAGCCCCTGAGTAGCGCGTG+TGG 0.553355 1_4:+40333478 None:intergenic
TTTGAGTTCTTAGATAGCAT+AGG 0.555623 1_4:-40329713 Msa0162810:three_prime_UTR
GTGGCGCGTGAGATAAGTTC+TGG 0.557053 1_4:+40333639 None:intergenic
AGTTCGTCTTTGGAAACCAA+TGG 0.560987 1_4:-40330786 Msa0162810:CDS
GATGATAGACAAAGTAGAGA+TGG 0.562540 1_4:-40330389 Msa0162810:CDS
ACACCAATAGGTGAAGTTGA+TGG 0.562831 1_4:+40330572 None:intergenic
AAATATGAAAATGTAATTGA+GGG 0.562854 1_4:+40335448 None:intergenic
GAGGACGCGCGTGTTCCCAT+TGG 0.566554 1_4:-40333425 Msa0162810:CDS
GAGTAATTGATGTAACCTGA+TGG 0.567818 1_4:+40333758 None:intergenic
GAAGTTGTTAATGTTAATGG+TGG 0.567999 1_4:-40333305 Msa0162810:CDS
CTTCAAACGGCTGTGTTTCG+GGG 0.569323 1_4:-40333385 Msa0162810:CDS
TCTTTGGAAACCAATGGTGG+AGG 0.574109 1_4:-40330780 Msa0162810:CDS
GAAGGCCGTCAGAACCACCT+TGG 0.574186 1_4:+40333801 None:intergenic
ATGAAGGATCAAGAGCTGAA+TGG 0.575119 1_4:-40330740 Msa0162810:CDS
GAAATCCAAGGTGGTTCTGA+CGG 0.578996 1_4:-40333806 Msa0162810:CDS
CGCGCATGCAGTACAACATG+TGG 0.583615 1_4:-40333535 Msa0162810:CDS
GTTTGATTTCAGTTATCCCA+AGG 0.588172 1_4:-40331003 Msa0162810:CDS
ATTCAACTTTCAGTTGCAAG+TGG 0.592682 1_4:-40335008 Msa0162810:intron
TGTTGTACTGCATGCGCGGT+GGG 0.595977 1_4:+40333540 None:intergenic
ACGCGCGTGTTCCCATTGGT+GGG 0.596736 1_4:-40333421 Msa0162810:CDS
TAATATATATTTCTTAGCAT+AGG 0.597273 1_4:-40335389 Msa0162810:five_prime_UTR
AAGCAAGTCCAAAGCGAACG+AGG 0.604196 1_4:-40330496 Msa0162810:CDS
AATGGTGGAGGAAATGTACA+TGG 0.609719 1_4:-40330768 Msa0162810:CDS
TGTTGGAGAATCTTCAACTG+CGG 0.611838 1_4:-40333237 Msa0162810:CDS
CCCCGCCGACCCTAATTCAG+CGG 0.612266 1_4:-40333510 Msa0162810:CDS
TGGTTTCGGTCAATATCCAA+TGG 0.615136 1_4:-40330330 Msa0162810:CDS
TCGTCTTTGGAAACCAATGG+TGG 0.617524 1_4:-40330783 Msa0162810:CDS
TCGGCAGAACAATCAGTACA+TGG 0.621271 1_4:-40333593 Msa0162810:CDS
ACGCGCCGCTGAATTAGGGT+CGG 0.621487 1_4:+40333505 None:intergenic
TTTCATCGAAGGATCGTCAT+CGG 0.623127 1_4:+40330688 None:intergenic
GAGGTTGGAACTCTTTCTTG+TGG 0.623921 1_4:+40330656 None:intergenic
GCTTTGGTGGCAAAATTGAA+GGG 0.625009 1_4:-40331427 Msa0162810:CDS
AATATGAAAATGTAATTGAG+GGG 0.625866 1_4:+40335449 None:intergenic
CGCGCCACCACAGTTTGTGG+GGG 0.626295 1_4:-40333624 Msa0162810:CDS
AAGTTGTTAATGTTAATGGT+GGG 0.628751 1_4:-40333304 Msa0162810:CDS
GCAAAGCAGAAACCTCATGA+TGG 0.629561 1_4:+40333570 None:intergenic
CCAAACCAAAACATTCAACT+GGG 0.629955 1_4:-40330182 Msa0162810:CDS
ATATCACAACCAAATGCAGA+TGG 0.632389 1_4:-40331603 Msa0162810:CDS
CATTAAGCTTACATGCTCAA+GGG 0.634278 1_4:-40333454 Msa0162810:CDS
CACATGTTGTACTGCATGCG+CGG 0.634344 1_4:+40333536 None:intergenic
ATCAGTACATGGCCATCATG+AGG 0.634995 1_4:-40333582 Msa0162810:CDS
ATGCGGAACAATTTGCACCA+AGG 0.636094 1_4:-40330289 Msa0162810:CDS
TCCTGCAACTTGTTCAAACG+AGG 0.638911 1_4:+40331574 None:intergenic
TCAACATGCAGAATCCAAAG+AGG 0.639986 1_4:-40330097 Msa0162810:CDS
TGTGCGCTTCTCTTAAAGCA+GGG 0.642976 1_4:-40329885 Msa0162810:three_prime_UTR
ACTGATTGTTCTGCCGAGAG+CGG 0.645804 1_4:+40333599 None:intergenic
GGTGTTGAAACTGAAACCAT+AGG 0.645975 1_4:+40330593 None:intergenic
ACAAGGTTACCGGCGTGTGG+CGG 0.649540 1_4:+40333719 None:intergenic
AAAACAAGGTTACCGGCGTG+TGG 0.650178 1_4:+40333716 None:intergenic
ACTGCGGTTAGTGGAGAAGG+TGG 0.650559 1_4:-40333221 Msa0162810:CDS
GGTGGAGGGAAGTGTTGCCG+GGG 0.656423 1_4:+40333672 None:intergenic
TCAAGAGCTGAATGGTTCCG+AGG 0.663324 1_4:-40330732 Msa0162810:CDS
GGAAATCGGAAGATTTGATG+CGG 0.664371 1_4:-40330306 Msa0162810:CDS
CCTGATAATGTGTCACAATG+AGG 0.665244 1_4:+40330224 None:intergenic
AACTCAGCTGCCAATCACCC+CGG 0.666884 1_4:-40333689 Msa0162810:CDS
ACATGCTCAAGGGTCAGGCG+AGG 0.668836 1_4:-40333444 Msa0162810:CDS
TGTGAATAGATCAAAACATG+AGG 0.668986 1_4:+40335213 None:intergenic
ACAAGAAAGAGTTCCAACCT+CGG 0.675024 1_4:-40330654 Msa0162810:CDS
AAAATCCGGTAACAATTGTG+CGG 0.678724 1_4:+40330070 None:intergenic
AAGCCACACGCGCTACTCAG+GGG 0.685417 1_4:-40333481 Msa0162810:CDS
ATGTTGTACTGCATGCGCGG+TGG 0.691285 1_4:+40333539 None:intergenic
AATGCTTGGAGACCTCAAAG+AGG 0.697679 1_4:-40331332 Msa0162810:CDS
TTTCGGTCAATATCCAATGG+AGG 0.697787 1_4:-40330327 Msa0162810:CDS
AATAATTCAGAAATCCAAGG+TGG 0.720775 1_4:-40333815 Msa0162810:CDS
CCGCTGAATTAGGGTCGGCG+GGG 0.731123 1_4:+40333510 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATCATATAATTCAATA+TGG - chr1_4:40330726-40330745 Msa0162810:CDS 10.0%
!! CAAAAAAAAAAAACAATATT+AGG + chr1_4:40331969-40331988 None:intergenic 10.0%
!!! ACTCAAATTTATTTAATTTT+TGG - chr1_4:40332279-40332298 Msa0162810:intron 10.0%
!! AAAAAAAGGATAAAAAAAAA+CGG + chr1_4:40332743-40332762 None:intergenic 10.0%
!!! TTTTTATCCTTTTTTTTTTA+AGG - chr1_4:40332606-40332625 Msa0162810:intron 10.0%
!!! TTTTTATCCTTTTTTTTTTA+AGG + chr1_4:40332606-40332625 None:intergenic 10.0%
!! AAAAAAAGGATAAAAAAAAA+CGG - chr1_4:40332743-40332762 Msa0162810:intron 10.0%
!! AAAAAAAGGATAAAAAAAAA+CGG + chr1_4:40332743-40332762 None:intergenic 10.0%
!!! TTTTTATCCTTTTTTTTTTA+AGG - chr1_4:40332606-40332625 Msa0162810:intron 10.0%
!! AAAAAAAAAGGATAAAAAAA+CGG + chr1_4:40332741-40332760 None:intergenic 10.0%
!!! TTTTTTATCCTTTTTTTTTA+AGG - chr1_4:40332895-40332914 Msa0162810:intron 10.0%
!!! AAATCTAAAAACTAAAATTT+TGG + chr1_4:40333110-40333129 None:intergenic 10.0%
!!! ATTTTTCTTTTTTTTTTTTG+TGG + chr1_4:40333244-40333263 None:intergenic 10.0%
!!! TAAATTAACATTTTAGTTTT+TGG - chr1_4:40333788-40333807 Msa0162810:CDS 10.0%
!! TTAAAAAATTACTAAATTGA+CGG + chr1_4:40333858-40333877 None:intergenic 10.0%
!! AAATATGAAAATGTAATTGA+GGG + chr1_4:40329544-40329563 None:intergenic 15.0%
!! AAAATATGAAAATGTAATTG+AGG + chr1_4:40329545-40329564 None:intergenic 15.0%
!! TAATATATATTTCTTAGCAT+AGG - chr1_4:40329600-40329619 Msa0162810:three_prime_UTR 15.0%
!!! TTTTTCATAATTGAAATTCT+GGG + chr1_4:40329895-40329914 None:intergenic 15.0%
!!! TTTTTTCATAATTGAAATTC+TGG + chr1_4:40329896-40329915 None:intergenic 15.0%
!! TTATATATATGATCTATGTT+TGG + chr1_4:40330028-40330047 None:intergenic 15.0%
!!! CTGTAAAATATATATTGTTT+TGG - chr1_4:40330146-40330165 Msa0162810:CDS 15.0%
!!! AAAATATATATTGTTTTGGT+AGG - chr1_4:40330150-40330169 Msa0162810:CDS 15.0%
!!! AAATAGAAATCTTTTGTTTT+TGG + chr1_4:40330212-40330231 None:intergenic 15.0%
!!! AATTTGAATTTTCCAAATTA+AGG + chr1_4:40330701-40330720 None:intergenic 15.0%
!!! AAAAGTATAATCAATTAACA+TGG + chr1_4:40330765-40330784 None:intergenic 15.0%
!! GATATAAAAAAAACATTATG+TGG + chr1_4:40330938-40330957 None:intergenic 15.0%
!! AAGTAACAAAAAAAAATTGA+TGG - chr1_4:40331137-40331156 Msa0162810:intron 15.0%
!!! GAGTTAATTAAATTTAGTTT+TGG - chr1_4:40331909-40331928 Msa0162810:intron 15.0%
!!! TTACTTTTTAAGTATGATTA+AGG - chr1_4:40332145-40332164 Msa0162810:intron 15.0%
!!! AGAATTTATGTTTTTTAGAA+TGG - chr1_4:40332177-40332196 Msa0162810:intron 15.0%
!! ATTGTTTCCTTAAAAAAAAA+AGG + chr1_4:40332729-40332748 None:intergenic 15.0%
!! ATTGTTTCCTTAAAAAAAAA+AGG - chr1_4:40332729-40332748 Msa0162810:intron 15.0%
!! ATTGTTTCCTTAAAAAAAAA+AGG + chr1_4:40332729-40332748 None:intergenic 15.0%
!! AATTGTTTCCTTAAAAAAAA+AGG + chr1_4:40332728-40332747 None:intergenic 15.0%
!! TGTTTCCTTAAAAAAAAAAA+CGG + chr1_4:40333003-40333022 None:intergenic 15.0%
!!! TAAAAACTAAAATTTTGGAA+AGG + chr1_4:40333105-40333124 None:intergenic 15.0%
!!! TCTATCATTTTAAAATTCTA+AGG - chr1_4:40333144-40333163 Msa0162810:CDS 15.0%
!! ATACTAAAAATGAATTAATG+TGG - chr1_4:40333317-40333336 Msa0162810:CDS 15.0%
!!! TTTTATGATACTATTAGAAA+AGG - chr1_4:40333758-40333777 Msa0162810:CDS 15.0%
!! TTATATCATAAAGTTTCAAT+TGG - chr1_4:40335365-40335384 Msa0162810:five_prime_UTR 15.0%
!! ATAAGAAAAATAAAAGAAAG+TGG + chr1_4:40335478-40335497 None:intergenic 15.0%
!! AATATGAAAATGTAATTGAG+GGG + chr1_4:40329543-40329562 None:intergenic 20.0%
!!! ATTTTTTGTCCATAAATGAT+TGG - chr1_4:40329921-40329940 Msa0162810:three_prime_UTR 20.0%
!! TCATATTATCCAATCATTTA+TGG + chr1_4:40329933-40329952 None:intergenic 20.0%
!! ACATAGATCATATATATAAG+AGG - chr1_4:40330029-40330048 Msa0162810:three_prime_UTR 20.0%
!!! AAAAGATTTCTATTTCTCAT+AGG - chr1_4:40330217-40330236 Msa0162810:CDS 20.0%
!!! TTTTCTTTTAGTACAGAAAA+AGG + chr1_4:40330452-40330471 None:intergenic 20.0%
!! NNNNNNNNTTAATCACATGG+TGG + chr1_4:40330549-40330568 None:intergenic 20.0%
!! ATTTCATCTATACCTTAATT+TGG - chr1_4:40330686-40330705 Msa0162810:CDS 20.0%
!! ATAATCAATTAACATGGTAT+TGG + chr1_4:40330759-40330778 None:intergenic 20.0%
!! AATTTGATAGGAACTAAATT+TGG + chr1_4:40332006-40332025 None:intergenic 20.0%
!! TTAATTCATGTTTGATTCTA+TGG + chr1_4:40332387-40332406 None:intergenic 20.0%
!! GCATAAAAAAAAAATATGCA+AGG - chr1_4:40332465-40332484 Msa0162810:intron 20.0%
!!! TTGTTCATTGGTTTTTTTTT+TGG + chr1_4:40332966-40332985 None:intergenic 20.0%
!!! CTTAAAAAAAAAAACGGATT+CGG + chr1_4:40332997-40333016 None:intergenic 20.0%
!!! ATTTCTTGCAAATACTTTTA+TGG + chr1_4:40333202-40333221 None:intergenic 20.0%
!! TATTGATCATGTTAACAATA+TGG - chr1_4:40334149-40334168 Msa0162810:intron 20.0%
!!! ATTATTAGTTGTTGTTTCAT+TGG + chr1_4:40334556-40334575 None:intergenic 20.0%
!! GAACAAATTTCAATGAAATT+TGG - chr1_4:40334576-40334595 Msa0162810:intron 20.0%
!! GAATTTGATTATTCTAGTAT+AGG - chr1_4:40335232-40335251 Msa0162810:five_prime_UTR 20.0%
!!! ATTTTTGTAAGTTTTGAAGA+TGG - chr1_4:40335331-40335350 Msa0162810:five_prime_UTR 20.0%
!!! TTTTTGTAAGTTTTGAAGAT+GGG - chr1_4:40335332-40335351 Msa0162810:five_prime_UTR 20.0%
!! CATAAAACATATATTCTCAA+TGG + chr1_4:40335411-40335430 None:intergenic 20.0%
!!! CATTGAGAATATATGTTTTA+TGG - chr1_4:40335409-40335428 Msa0162810:five_prime_UTR 20.0%
!! TAAAAGAAAGTGGTAATAAT+TGG + chr1_4:40335468-40335487 None:intergenic 20.0%
!!! ATCTTTCTATAGCCTTTTTT+GGG + chr1_4:40329813-40329832 None:intergenic 25.0%
!!! TATCTTTCTATAGCCTTTTT+TGG + chr1_4:40329814-40329833 None:intergenic 25.0%
! AGATCATATATATAAGAGGT+TGG - chr1_4:40330033-40330052 Msa0162810:three_prime_UTR 25.0%
! TATAAGGACTTAAAAAGGAA+AGG + chr1_4:40330522-40330541 None:intergenic 25.0%
! GACTATATAAGGACTTAAAA+AGG + chr1_4:40330527-40330546 None:intergenic 25.0%
! TCTCAATAATTGAAGAAGAA+TGG + chr1_4:40330840-40330859 None:intergenic 25.0%
! AAATTCACAATTTGACATCT+TGG + chr1_4:40331032-40331051 None:intergenic 25.0%
! CATAATAATTCAGAAATCCA+AGG - chr1_4:40331171-40331190 Msa0162810:intron 25.0%
! GATGAAGTTGTTAATGTTAA+TGG - chr1_4:40331681-40331700 Msa0162810:intron 25.0%
! AAGTTGTTAATGTTAATGGT+GGG - chr1_4:40331685-40331704 Msa0162810:intron 25.0%
!!! GAAGAGTTTTGAGAAAAATA+AGG - chr1_4:40331728-40331747 Msa0162810:intron 25.0%
! TTTGAGAAAAATAAGGTTGT+TGG - chr1_4:40331735-40331754 Msa0162810:intron 25.0%
! CTTGAAAGAACAAATTTGAT+AGG + chr1_4:40332018-40332037 None:intergenic 25.0%
!!! TGTTTTTTTGACAGATAGAA+TGG - chr1_4:40332208-40332227 Msa0162810:intron 25.0%
!! GAATGGTTTTTATGCAAAAT+AGG - chr1_4:40332225-40332244 Msa0162810:intron 25.0%
! AAAAAAAAATATGCAAGGTC+CGG - chr1_4:40332470-40332489 Msa0162810:intron 25.0%
!! AGGATAAAAAAAAACGGATT+CGG + chr1_4:40332749-40332768 None:intergenic 25.0%
!! AGGATAAAAAAAAACGGATT+CGG - chr1_4:40332749-40332768 Msa0162810:intron 25.0%
!! AGGATAAAAAAAAACGGATT+CGG + chr1_4:40332749-40332768 None:intergenic 25.0%
!!! ATTGGTAATTTTTTTTGTGG+TGG + chr1_4:40332865-40332884 None:intergenic 25.0%
!! AAAGGATAAAAAAACGGATT+CGG + chr1_4:40332888-40332907 None:intergenic 25.0%
!!! TTCATTGGTTTTTTTTTTGG+TGG + chr1_4:40332963-40332982 None:intergenic 25.0%
!!! CGAATCCGTTTTTTTTTTTA+AGG - chr1_4:40332995-40333014 Msa0162810:intron 25.0%
!!! ACTAAAATTTTGGAAAGGAA+AGG + chr1_4:40333100-40333119 None:intergenic 25.0%
! ATGAATTAATGTGGTTTCTT+TGG - chr1_4:40333326-40333345 Msa0162810:CDS 25.0%
!! TTTTAAACATCGAAATTGCT+TGG + chr1_4:40333487-40333506 None:intergenic 25.0%
! TGTTTAAAAGATGCAATTAC+CGG - chr1_4:40333498-40333517 Msa0162810:CDS 25.0%
!! GATATATTCAGGTCTTTTAT+TGG - chr1_4:40333942-40333961 Msa0162810:intron 25.0%
!!! TTGTTTGGAATTGAAACTTT+TGG + chr1_4:40334370-40334389 None:intergenic 25.0%
! TTATTATTACCTGAAAACCT+TGG + chr1_4:40334720-40334739 None:intergenic 25.0%
!!! AGGTTTTCAGGTAATAATAA+TGG - chr1_4:40334720-40334739 Msa0162810:intron 25.0%
! GGAAATAGATTATACAAATG+AGG - chr1_4:40334965-40334984 Msa0162810:five_prime_UTR 25.0%
! AGATTATACAAATGAGGAAA+CGG - chr1_4:40334971-40334990 Msa0162810:five_prime_UTR 25.0%
! TGAAATCTATGTGTTTACTT+TGG - chr1_4:40335173-40335192 Msa0162810:intron 25.0%
! GAAATCTATGTGTTTACTTT+GGG - chr1_4:40335174-40335193 Msa0162810:intron 25.0%
! AAATCTATGTGTTTACTTTG+GGG - chr1_4:40335175-40335194 Msa0162810:intron 25.0%
! TTGTAGTGTATAAAGAAAGA+AGG - chr1_4:40335210-40335229 Msa0162810:intron 25.0%
!!! TTAGAACTATTTTTTTGGGG+GGG + chr1_4:40329676-40329695 None:intergenic 30.0%
!!! CTTAGAACTATTTTTTTGGG+GGG + chr1_4:40329677-40329696 None:intergenic 30.0%
!!! CCTTAGAACTATTTTTTTGG+GGG + chr1_4:40329678-40329697 None:intergenic 30.0%
!!! CCCTTAGAACTATTTTTTTG+GGG + chr1_4:40329679-40329698 None:intergenic 30.0%
!! CCCCAAAAAAATAGTTCTAA+GGG - chr1_4:40329676-40329695 Msa0162810:three_prime_UTR 30.0%
!!! CCCCTTAGAACTATTTTTTT+GGG + chr1_4:40329680-40329699 None:intergenic 30.0%
!! CCCAAAAAAATAGTTCTAAG+GGG - chr1_4:40329677-40329696 Msa0162810:three_prime_UTR 30.0%
!! CCAAAAAAATAGTTCTAAGG+GGG - chr1_4:40329678-40329697 Msa0162810:three_prime_UTR 30.0%
TGTGAATAGATCAAAACATG+AGG + chr1_4:40329779-40329798 None:intergenic 30.0%
!!! TCATGTTTTGATCTATTCAC+AGG - chr1_4:40329778-40329797 Msa0162810:three_prime_UTR 30.0%
!!! TCTTTCTATAGCCTTTTTTG+GGG + chr1_4:40329812-40329831 None:intergenic 30.0%
! AAGCTTTTTACAAAGGATAG+TGG + chr1_4:40330480-40330499 None:intergenic 30.0%
! ACATTTTACCTTTGTGAATC+TGG + chr1_4:40330899-40330918 None:intergenic 30.0%
AATAATTCAGAAATCCAAGG+TGG - chr1_4:40331174-40331193 Msa0162810:intron 30.0%
TCATGAAAATGAGTGTTTGA+AGG + chr1_4:40331209-40331228 None:intergenic 30.0%
GAAGTTGTTAATGTTAATGG+TGG - chr1_4:40331684-40331703 Msa0162810:intron 30.0%
! TAATGTTAATGGTGGGATTA+AGG - chr1_4:40331692-40331711 Msa0162810:intron 30.0%
GTTAATTAACATGCTTGATG+AGG - chr1_4:40331878-40331897 Msa0162810:intron 30.0%
! GTTCTTTCAAGTAATTGAGT+TGG - chr1_4:40332027-40332046 Msa0162810:intron 30.0%
ATTCATGTTTGATTCTATGG+TGG + chr1_4:40332384-40332403 None:intergenic 30.0%
AGTTGGTCATGGTTTAATAA+AGG + chr1_4:40332410-40332429 None:intergenic 30.0%
AAAAAAAATATGCAAGGTCC+GGG - chr1_4:40332471-40332490 Msa0162810:intron 30.0%
!!! TCATGGGTTTTTTTTTGTGA+TGG + chr1_4:40332561-40332580 None:intergenic 30.0%
! AAAAAAAAACGGATTCGGAT+TGG + chr1_4:40332754-40332773 None:intergenic 30.0%
! AAAAAAAAACGGATTCGGAT+TGG + chr1_4:40332754-40332773 None:intergenic 30.0%
!!! CGGATTGGTAATTTTTTTTG+TGG + chr1_4:40332868-40332887 None:intergenic 30.0%
! ATAAAAAAACGGATTCGGAT+TGG + chr1_4:40332883-40332902 None:intergenic 30.0%
! AAAAAAAAACGGATTCGGAT+TGG + chr1_4:40332754-40332773 None:intergenic 30.0%
!! AAAATTTTGGAAAGGAAAGG+AGG + chr1_4:40333097-40333116 None:intergenic 30.0%
!!! TTTGGATTGTTTTGGTTTGA+AGG - chr1_4:40333344-40333363 Msa0162810:CDS 30.0%
ACAAAGAGCTATTCAACAAT+TGG - chr1_4:40333620-40333639 Msa0162810:CDS 30.0%
CAAAGAGCTATTCAACAATT+GGG - chr1_4:40333621-40333640 Msa0162810:CDS 30.0%
AAGAACAGAAACAGATCTTT+CGG + chr1_4:40333688-40333707 None:intergenic 30.0%
! AAAAGTATAGCGAGTACTTA+CGG + chr1_4:40333741-40333760 None:intergenic 30.0%
!!! GTTTTTGGAATTGAAAGAGT+CGG - chr1_4:40333803-40333822 Msa0162810:CDS 30.0%
TCATTGAAGTCGATATATTC+AGG - chr1_4:40333931-40333950 Msa0162810:intron 30.0%
CACTTAATAAAGAAGTAAGG+AGG + chr1_4:40334066-40334085 None:intergenic 30.0%
CGACACTTAATAAAGAAGTA+AGG + chr1_4:40334069-40334088 None:intergenic 30.0%
TCATGTTAACAATATGGTAC+AGG - chr1_4:40334155-40334174 Msa0162810:intron 30.0%
ATATGGTACAGGTTTCAAAT+TGG - chr1_4:40334166-40334185 Msa0162810:intron 30.0%
TTTCTAACATTCACACCAAT+AGG + chr1_4:40334432-40334451 None:intergenic 30.0%
GTGAATGTTAGAAACAATTC+AGG - chr1_4:40334438-40334457 Msa0162810:intron 30.0%
TAGAGATGGTTATTGTTTCA+TGG - chr1_4:40334614-40334633 Msa0162810:intron 30.0%
AGAGATGGTTATTGTTTCAT+GGG - chr1_4:40334615-40334634 Msa0162810:intron 30.0%
AACCAAACTAATTTCATTGC+TGG - chr1_4:40334639-40334658 Msa0162810:intron 30.0%
AACCAGCAATGAAATTAGTT+TGG + chr1_4:40334644-40334663 None:intergenic 30.0%
!! ACTAATTTCATTGCTGGTTT+CGG - chr1_4:40334645-40334664 Msa0162810:intron 30.0%
ATTAGCGAAACAAATGAGTT+TGG - chr1_4:40334843-40334862 Msa0162810:intron 30.0%
CTTATTTATGCCACAAAATC+CGG + chr1_4:40334936-40334955 None:intergenic 30.0%
TGGCATAAATAAGACATTGA+AGG - chr1_4:40334943-40334962 Msa0162810:intron 30.0%
GGCATAAATAAGACATTGAA+GGG - chr1_4:40334944-40334963 Msa0162810:intron 30.0%
AAGAAACACAATCAATGCTA+TGG + chr1_4:40335139-40335158 None:intergenic 30.0%
ATGCTATCTAAGAACTCAAA+TGG + chr1_4:40335276-40335295 None:intergenic 30.0%
! TTTGAGTTCTTAGATAGCAT+AGG - chr1_4:40335276-40335295 Msa0162810:five_prime_UTR 30.0%
TTGAGTTCTTAGATAGCATA+GGG - chr1_4:40335277-40335296 Msa0162810:five_prime_UTR 30.0%
! CATAGGGATTTGAAAGTATA+TGG - chr1_4:40335293-40335312 Msa0162810:five_prime_UTR 30.0%
! GATTTGAAAGTATATGGTTG+AGG - chr1_4:40335299-40335318 Msa0162810:five_prime_UTR 30.0%
! CCCCCAAAAAAATAGTTCTA+AGG - chr1_4:40329675-40329694 Msa0162810:three_prime_UTR 35.0%
!!! CCCCCTTAGAACTATTTTTT+TGG + chr1_4:40329681-40329700 None:intergenic 35.0%
!!! CTTTCTATAGCCTTTTTTGG+GGG + chr1_4:40329811-40329830 None:intergenic 35.0%
ATTCAACTTTCAGTTGCAAG+TGG - chr1_4:40329981-40330000 Msa0162810:three_prime_UTR 35.0%
CAATTTACATCACAATCTGC+AGG - chr1_4:40330303-40330322 Msa0162810:CDS 35.0%
! CACATGGAAGCTTTTTACAA+AGG + chr1_4:40330487-40330506 None:intergenic 35.0%
!! ATCACATGGTGGACTATATA+AGG + chr1_4:40330538-40330557 None:intergenic 35.0%
TTTACCTTTGTGAATCTGGT+TGG + chr1_4:40330895-40330914 None:intergenic 35.0%
! CTCATTTTCATGAATCCATC+AGG - chr1_4:40331216-40331235 Msa0162810:intron 35.0%
GAGTAATTGATGTAACCTGA+TGG + chr1_4:40331234-40331253 None:intergenic 35.0%
GTTGAGAAAAACAAGGTTAC+CGG + chr1_4:40331283-40331302 None:intergenic 35.0%
TCATTAAGCTTACATGCTCA+AGG - chr1_4:40331534-40331553 Msa0162810:CDS 35.0%
CATTAAGCTTACATGCTCAA+GGG - chr1_4:40331535-40331554 Msa0162810:CDS 35.0%
!! CAAGTAATTGAGTTGGTAAC+TGG - chr1_4:40332034-40332053 Msa0162810:intron 35.0%
AAAAAAATATGCAAGGTCCG+GGG - chr1_4:40332472-40332491 Msa0162810:intron 35.0%
!!! GTTTTTTTTTGTGATGGTCG+GGG + chr1_4:40332555-40332574 None:intergenic 35.0%
!!! GGTTTTTTTTTGTGATGGTC+GGG + chr1_4:40332556-40332575 None:intergenic 35.0%
!!! GGGTTTTTTTTTGTGATGGT+CGG + chr1_4:40332557-40332576 None:intergenic 35.0%
!! TCGGATTGGTAATTGTTCAT+GGG + chr1_4:40332577-40332596 None:intergenic 35.0%
!! TTCGGATTGGTAATTGTTCA+TGG + chr1_4:40332578-40332597 None:intergenic 35.0%
AAACAATTACCAATCCTGCA+AGG - chr1_4:40332629-40332648 Msa0162810:intron 35.0%
AAACAATTACCAATCCTGCA+AGG + chr1_4:40332629-40332648 None:intergenic 35.0%
AAACAATTACCAATCCTGCA+AGG - chr1_4:40332629-40332648 Msa0162810:intron 35.0%
!!! AATTTTTTTTGTGGTGGCTG+AGG + chr1_4:40332859-40332878 None:intergenic 35.0%
AAACAATTACCAATCCTGCA+AGG - chr1_4:40332629-40332648 Msa0162810:intron 35.0%
!!! TTGGTTTTTTTTTTGGTGGC+CGG + chr1_4:40332959-40332978 None:intergenic 35.0%
!! TCGGATTGGTAATTGTTCAT+TGG + chr1_4:40332577-40332596 None:intergenic 35.0%
TGTGCTAGTAACAAGTGAAA+TGG - chr1_4:40333065-40333084 Msa0162810:intron 35.0%
! GTGGTTTCTTTGGATTGTTT+TGG - chr1_4:40333336-40333355 Msa0162810:CDS 35.0%
ATATCACAACCAAATGCAGA+TGG - chr1_4:40333386-40333405 Msa0162810:CDS 35.0%
TTTGAACAAGTTGCAGGAAT+TGG - chr1_4:40333420-40333439 Msa0162810:CDS 35.0%
TTGCTTGGAGATTGTTTGTA+GGG + chr1_4:40333472-40333491 None:intergenic 35.0%
ATTGCTTGGAGATTGTTTGT+AGG + chr1_4:40333473-40333492 None:intergenic 35.0%
! TCTTATTCGCAGCTCTAATT+TGG + chr1_4:40333524-40333543 None:intergenic 35.0%
GAATGATCCATCATAATGCT+TGG - chr1_4:40333643-40333662 Msa0162810:CDS 35.0%
AGAACAGAAACAGATCTTTC+GGG + chr1_4:40333687-40333706 None:intergenic 35.0%
ACGGACGTTAAACTATTCAA+AGG + chr1_4:40333839-40333858 None:intergenic 35.0%
! GTTTGATTTCAGTTATCCCA+AGG - chr1_4:40333986-40334005 Msa0162810:intron 35.0%
ATGTGTTTGTCTGAATCCTT+GGG + chr1_4:40334005-40334024 None:intergenic 35.0%
CAAAACAAACAGGACTTACT+AGG - chr1_4:40334030-40334049 Msa0162810:intron 35.0%
AATGTACATGGAAGAGATGA+AGG - chr1_4:40334233-40334252 Msa0162810:intron 35.0%
!! TTTGCTTGATTTGTTGTCCT+CGG + chr1_4:40334277-40334296 None:intergenic 35.0%
TTCCAAACAAGACATTCCTA+TGG - chr1_4:40334380-40334399 Msa0162810:intron 35.0%
! AACCATAGGAATGTCTTGTT+TGG + chr1_4:40334385-40334404 None:intergenic 35.0%
TCGGTGATTGAAGAATTTCA+TGG + chr1_4:40334521-40334540 None:intergenic 35.0%
TCATTGGACTTCACATGATT+CGG + chr1_4:40334540-40334559 None:intergenic 35.0%
GATGATAGACAAAGTAGAGA+TGG - chr1_4:40334600-40334619 Msa0162810:intron 35.0%
CAATATCCAATGGAGGAAAT+CGG - chr1_4:40334669-40334688 Msa0162810:intron 35.0%
CCAAACCAAAACATTCAACT+GGG - chr1_4:40334807-40334826 Msa0162810:intron 35.0%
! TTCTTCCCAGTTGAATGTTT+TGG + chr1_4:40334815-40334834 None:intergenic 35.0%
AAAATCCGGTAACAATTGTG+CGG + chr1_4:40334922-40334941 None:intergenic 35.0%
! ACAATTGTTACCGGATTTTG+TGG - chr1_4:40334923-40334942 Msa0162810:intron 35.0%
! AACTCAAATGGTTCTATGCA+GGG + chr1_4:40335264-40335283 None:intergenic 35.0%
!!! AGTTTTGAAGATGGGATAGA+TGG - chr1_4:40335340-40335359 Msa0162810:five_prime_UTR 35.0%
!!! GTTTTGAAGATGGGATAGAT+GGG - chr1_4:40335341-40335360 Msa0162810:five_prime_UTR 35.0%
AACTTTCAGTTGCAAGTGGA+AGG - chr1_4:40329985-40330004 Msa0162810:three_prime_UTR 40.0%
AAGGAGTGATGAGATACACA+TGG + chr1_4:40330503-40330522 None:intergenic 40.0%
!! TCTGGTTGGTGTGTTATTTG+TGG + chr1_4:40330881-40330900 None:intergenic 40.0%
! CAGCTGAGTTGAGAAAAACA+AGG + chr1_4:40331290-40331309 None:intergenic 40.0%
!! ATAAGTTCTGGTGTTGTTGG+TGG + chr1_4:40331341-40331360 None:intergenic 40.0%
!! GAGATAAGTTCTGGTGTTGT+TGG + chr1_4:40331344-40331363 None:intergenic 40.0%
TGTTGGAGAATCTTCAACTG+CGG - chr1_4:40331752-40331771 Msa0162810:intron 40.0%
!!! CAAATTTTTTGTGGTGGCTG+AGG + chr1_4:40332668-40332687 None:intergenic 40.0%
CAGCCACCACAAAAAATTTG+TGG - chr1_4:40332668-40332687 Msa0162810:intron 40.0%
!!! CCACCACAAATTTTTTGTGG+TGG + chr1_4:40332674-40332693 None:intergenic 40.0%
CCACCACAAAAAATTTGTGG+TGG - chr1_4:40332671-40332690 Msa0162810:intron 40.0%
!!! CAGCCACCACAAATTTTTTG+TGG + chr1_4:40332677-40332696 None:intergenic 40.0%
CAAAAAATTTGTGGTGGCTG+AGG - chr1_4:40332677-40332696 Msa0162810:intron 40.0%
!!! TGGTTTTTTTTTTGGTGGCC+GGG + chr1_4:40332958-40332977 None:intergenic 40.0%
GTTGTGATCACTACTAGGAT+TGG + chr1_4:40333030-40333049 None:intergenic 40.0%
TGTGAGTTGTGATCACTACT+AGG + chr1_4:40333035-40333054 None:intergenic 40.0%
!!! GGATTGTTTTGGTTTGAAGG+TGG - chr1_4:40333347-40333366 Msa0162810:CDS 40.0%
AGGAAATCACCATCTGCATT+TGG + chr1_4:40333398-40333417 None:intergenic 40.0%
TAGAGCTGCGAATAAGAGTT+TGG - chr1_4:40333527-40333546 Msa0162810:CDS 40.0%
AGAGCTGCGAATAAGAGTTT+GGG - chr1_4:40333528-40333547 Msa0162810:CDS 40.0%
TTGGGAGAAGATGATAGCTT+TGG - chr1_4:40333546-40333565 Msa0162810:CDS 40.0%
! AGCTTTGGTGGCAAAATTGA+AGG - chr1_4:40333561-40333580 Msa0162810:CDS 40.0%
! GCTTTGGTGGCAAAATTGAA+GGG - chr1_4:40333562-40333581 Msa0162810:CDS 40.0%
CATGTGTTTGTCTGAATCCT+TGG + chr1_4:40334006-40334025 None:intergenic 40.0%
CACATGCTTGCAAAACAAAC+AGG - chr1_4:40334020-40334039 Msa0162810:intron 40.0%
ATGCTCGCACTCGTTATTAA+AGG + chr1_4:40334097-40334116 None:intergenic 40.0%
TAAATGCTCGAGTTCGTCTT+TGG - chr1_4:40334193-40334212 Msa0162810:intron 40.0%
! AGTTCGTCTTTGGAAACCAA+TGG - chr1_4:40334203-40334222 Msa0162810:intron 40.0%
ATGTACATTTCCTCCACCAT+TGG + chr1_4:40334222-40334241 None:intergenic 40.0%
! AATGGTGGAGGAAATGTACA+TGG - chr1_4:40334221-40334240 Msa0162810:intron 40.0%
ATGAAGGATCAAGAGCTGAA+TGG - chr1_4:40334249-40334268 Msa0162810:intron 40.0%
TTTCATCGAAGGATCGTCAT+CGG + chr1_4:40334304-40334323 None:intergenic 40.0%
ACAAGAAAGAGTTCCAACCT+CGG - chr1_4:40334335-40334354 Msa0162810:intron 40.0%
! ACTTTTGGATTCTGTTTCCG+AGG + chr1_4:40334355-40334374 None:intergenic 40.0%
! GGTGTTGAAACTGAAACCAT+AGG + chr1_4:40334399-40334418 None:intergenic 40.0%
ACACCATCAACTTCACCTAT+TGG - chr1_4:40334414-40334433 Msa0162810:intron 40.0%
ACACCAATAGGTGAAGTTGA+TGG + chr1_4:40334420-40334439 None:intergenic 40.0%
CAATTCAGGATTCAGCTTCA+CGG - chr1_4:40334452-40334471 Msa0162810:intron 40.0%
TGGTTTCGGTCAATATCCAA+TGG - chr1_4:40334659-40334678 Msa0162810:intron 40.0%
TTTCGGTCAATATCCAATGG+AGG - chr1_4:40334662-40334681 Msa0162810:intron 40.0%
AATCTTCCGATTTCCTCCAT+TGG + chr1_4:40334678-40334697 None:intergenic 40.0%
GGAAATCGGAAGATTTGATG+CGG - chr1_4:40334683-40334702 Msa0162810:intron 40.0%
! CAATTTGCACCAAGGTTTTC+AGG - chr1_4:40334708-40334727 Msa0162810:five_prime_UTR 40.0%
AATGGTGTTTCACTCACTCT+TGG - chr1_4:40334738-40334757 Msa0162810:intron 40.0%
! CCTGATAATGTGTCACAATG+AGG + chr1_4:40334768-40334787 None:intergenic 40.0%
CCTCATTGTGACACATTATC+AGG - chr1_4:40334765-40334784 Msa0162810:intron 40.0%
GCCAAACCAAAACATTCAAC+TGG - chr1_4:40334806-40334825 Msa0162810:intron 40.0%
!!! CCCAGTTGAATGTTTTGGTT+TGG + chr1_4:40334810-40334829 None:intergenic 40.0%
CATTCAACTGGGAAGAAGAT+TGG - chr1_4:40334818-40334837 Msa0162810:intron 40.0%
TCAACATGCAGAATCCAAAG+AGG - chr1_4:40334892-40334911 Msa0162810:intron 40.0%
! AGAAGCGCACATTTACATGT+TGG + chr1_4:40335095-40335114 None:intergenic 40.0%
TTCTCTTAAAGCAGGGAATC+TGG - chr1_4:40335111-40335130 Msa0162810:intron 40.0%
! GAACTCAAATGGTTCTATGC+AGG + chr1_4:40335265-40335284 None:intergenic 40.0%
AAGAGAGAGAGAGAGAGAGA+GGG + chr1_4:40329648-40329667 None:intergenic 45.0%
!! ATAGTTCTAAGGGGGTTGCT+TGG - chr1_4:40329686-40329705 Msa0162810:three_prime_UTR 45.0%
AGGTACTTCTCCCCCAAAAA+AGG - chr1_4:40329798-40329817 Msa0162810:three_prime_UTR 45.0%
CACACCAACCAGATTCACAA+AGG - chr1_4:40330888-40330907 Msa0162810:intron 45.0%
!! GAAATCCAAGGTGGTTCTGA+CGG - chr1_4:40331183-40331202 Msa0162810:intron 45.0%
TCGGCAGAACAATCAGTACA+TGG - chr1_4:40331396-40331415 Msa0162810:CDS 45.0%
ATCAGTACATGGCCATCATG+AGG - chr1_4:40331407-40331426 Msa0162810:CDS 45.0%
GCAAAGCAGAAACCTCATGA+TGG + chr1_4:40331422-40331441 None:intergenic 45.0%
CATGAGGTTTCTGCTTTGCA+TGG - chr1_4:40331423-40331442 Msa0162810:CDS 45.0%
TGCTTCAAACGGCTGTGTTT+CGG - chr1_4:40331602-40331621 Msa0162810:CDS 45.0%
GAATCTTCAACTGCGGTTAG+TGG - chr1_4:40331759-40331778 Msa0162810:intron 45.0%
!! TTGGTGGTGGTGATGGAAAT+GGG - chr1_4:40331796-40331815 Msa0162810:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr1_4:40332437-40332456 Msa0162810:intron 45.0%
ATTACCAATCCTGCAAGGTC+CGG - chr1_4:40332634-40332653 Msa0162810:intron 45.0%
ATTACCAATCCTGCAAGGTC+CGG + chr1_4:40332634-40332653 None:intergenic 45.0%
ATTACCAATCCTGCAAGGTC+CGG - chr1_4:40332634-40332653 Msa0162810:intron 45.0%
ATTACCAATCCTGCAAGGTC+CGG - chr1_4:40332634-40332653 Msa0162810:intron 45.0%
!!! GGTTTTTTTTTTGGTGGCCG+GGG + chr1_4:40332957-40332976 None:intergenic 45.0%
TCCTCGTTTGAACAAGTTGC+AGG - chr1_4:40333414-40333433 Msa0162810:CDS 45.0%
! TCCTGCAACTTGTTCAAACG+AGG + chr1_4:40333418-40333437 None:intergenic 45.0%
GGAGATTGTTTGTAGGGCTA+GGG + chr1_4:40333466-40333485 None:intergenic 45.0%
TGGAGATTGTTTGTAGGGCT+AGG + chr1_4:40333467-40333486 None:intergenic 45.0%
! ATTCGCAGCTCTAATTTGGC+CGG + chr1_4:40333520-40333539 None:intergenic 45.0%
!! GGAGAAGATGATAGCTTTGG+TGG - chr1_4:40333549-40333568 Msa0162810:CDS 45.0%
GTGGCAAAATTGAAGGGTCT+AGG - chr1_4:40333568-40333587 Msa0162810:CDS 45.0%
GAGGTCTCCAAGCATTATGA+TGG + chr1_4:40333653-40333672 None:intergenic 45.0%
AATGCTTGGAGACCTCAAAG+AGG - chr1_4:40333657-40333676 Msa0162810:CDS 45.0%
!! CTGTTTCTGTTCTTCGTGCT+TGG - chr1_4:40333694-40333713 Msa0162810:CDS 45.0%
GTATAGCGAGTACTTACGGA+TGG + chr1_4:40333737-40333756 None:intergenic 45.0%
AAAGAAGTAAGGAGGTCACC+TGG + chr1_4:40334058-40334077 None:intergenic 45.0%
! TCGTCTTTGGAAACCAATGG+TGG - chr1_4:40334206-40334225 Msa0162810:intron 45.0%
! TCTTTGGAAACCAATGGTGG+AGG - chr1_4:40334209-40334228 Msa0162810:intron 45.0%
!!! GGAGTTGGTGTTTTCATCGA+AGG + chr1_4:40334315-40334334 None:intergenic 45.0%
GGAACTCTTTCTTGTGGAGT+TGG + chr1_4:40334330-40334349 None:intergenic 45.0%
GAGGTTGGAACTCTTTCTTG+TGG + chr1_4:40334336-40334355 None:intergenic 45.0%
TTGGATTCTGTTTCCGAGGT+TGG + chr1_4:40334351-40334370 None:intergenic 45.0%
TTCAGCTTCACGGAACTTGA+TGG - chr1_4:40334462-40334481 Msa0162810:intron 45.0%
ATGCGGAACAATTTGCACCA+AGG - chr1_4:40334700-40334719 Msa0162810:five_prime_UTR 45.0%
AATTGTGCGGCAAACCTCTT+TGG + chr1_4:40334909-40334928 None:intergenic 45.0%
GTTTGCCGCACAATTGTTAC+CGG - chr1_4:40334914-40334933 Msa0162810:intron 45.0%
ATGTGCGCTTCTCTTAAAGC+AGG - chr1_4:40335103-40335122 Msa0162810:intron 45.0%
TGTGCGCTTCTCTTAAAGCA+GGG - chr1_4:40335104-40335123 Msa0162810:intron 45.0%
GAAGAGAGAGAGAGAGAGAG+AGG + chr1_4:40329649-40329668 None:intergenic 50.0%
AAAACAAGGTTACCGGCGTG+TGG + chr1_4:40331276-40331295 None:intergenic 50.0%
!! AGTTCTGGTGTTGTTGGTGG+TGG + chr1_4:40331338-40331357 None:intergenic 50.0%
ACTGATTGTTCTGCCGAGAG+CGG + chr1_4:40331393-40331412 None:intergenic 50.0%
CACATGTTGTACTGCATGCG+CGG + chr1_4:40331456-40331475 None:intergenic 50.0%
AGCTTACATGCTCAAGGGTC+AGG - chr1_4:40331540-40331559 Msa0162810:CDS 50.0%
TCGGGTTCGTCTGCTTCAAA+CGG - chr1_4:40331591-40331610 Msa0162810:CDS 50.0%
GCTTCAAACGGCTGTGTTTC+GGG - chr1_4:40331603-40331622 Msa0162810:CDS 50.0%
CTTCAAACGGCTGTGTTTCG+GGG - chr1_4:40331604-40331623 Msa0162810:CDS 50.0%
TCAACTGCGGTTAGTGGAGA+AGG - chr1_4:40331765-40331784 Msa0162810:intron 50.0%
! AGTGGAGAAGGTGGTTCTGT+TGG - chr1_4:40331777-40331796 Msa0162810:intron 50.0%
!! GTTGGTGGTGGTGATGGAAA+TGG - chr1_4:40331795-40331814 Msa0162810:intron 50.0%
TTACCAATCCTGCAAGGTCC+GGG - chr1_4:40332635-40332654 Msa0162810:intron 50.0%
TTACCAATCCTGCAAGGTCC+GGG + chr1_4:40332635-40332654 None:intergenic 50.0%
TTACCAATCCTGCAAGGTCC+GGG - chr1_4:40332635-40332654 Msa0162810:intron 50.0%
TTACCAATCCTGCAAGGTCC+GGG - chr1_4:40332635-40332654 Msa0162810:intron 50.0%
CTTTCGGGCAATCCTCTTTG+AGG + chr1_4:40333672-40333691 None:intergenic 50.0%
AACAGGACTTACTAGGAGCC+AGG - chr1_4:40334037-40334056 Msa0162810:intron 50.0%
TCAAGAGCTGAATGGTTCCG+AGG - chr1_4:40334257-40334276 Msa0162810:intron 50.0%
GAGAGAGAGAGAGAGAGGGA+GGG + chr1_4:40329644-40329663 None:intergenic 55.0%
AGAGAGAGAGAGAGAGAGGG+AGG + chr1_4:40329645-40329664 None:intergenic 55.0%
AACTCAGCTGCCAATCACCC+CGG - chr1_4:40331300-40331319 Msa0162810:CDS 55.0%
!! CTGGTGTTGTTGGTGGTGGA+GGG + chr1_4:40331334-40331353 None:intergenic 55.0%
!! TCTGGTGTTGTTGGTGGTGG+AGG + chr1_4:40331335-40331354 None:intergenic 55.0%
GTGGCGCGTGAGATAAGTTC+TGG + chr1_4:40331353-40331372 None:intergenic 55.0%
CTGATTGTTCTGCCGAGAGC+GGG + chr1_4:40331392-40331411 None:intergenic 55.0%
TGTTGTACTGCATGCGCGGT+GGG + chr1_4:40331452-40331471 None:intergenic 55.0%
ATGTTGTACTGCATGCGCGG+TGG + chr1_4:40331453-40331472 None:intergenic 55.0%
CGCGCATGCAGTACAACATG+TGG - chr1_4:40331454-40331473 Msa0162810:CDS 55.0%
CTTCACGCGCCGCTGAATTA+GGG + chr1_4:40331491-40331510 None:intergenic 55.0%
ACTGCGGTTAGTGGAGAAGG+TGG - chr1_4:40331768-40331787 Msa0162810:intron 55.0%
! GGAGAAGGTGGTTCTGTTGG+TGG - chr1_4:40331780-40331799 Msa0162810:intron 55.0%
! GAAGGTGGTTCTGTTGGTGG+TGG - chr1_4:40331783-40331802 Msa0162810:intron 55.0%
!! GGTTCTGTTGGTGGTGGTGA+TGG - chr1_4:40331789-40331808 Msa0162810:intron 55.0%
CTCACGAGGACAGTTGGTCA+TGG + chr1_4:40332421-40332440 None:intergenic 55.0%
GCTAAGCTCACGAGGACAGT+TGG + chr1_4:40332427-40332446 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr1_4:40332435-40332454 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr1_4:40332432-40332451 Msa0162810:intron 55.0%
GGTTCGAACCCTGACCATCA+CGG - chr1_4:40332521-40332540 Msa0162810:intron 55.0%
GTTCGAACCCTGACCATCAC+GGG - chr1_4:40332522-40332541 Msa0162810:intron 55.0%
TTCGAACCCTGACCATCACG+GGG - chr1_4:40332523-40332542 Msa0162810:intron 55.0%
TTCGAACCCCGTGATGGTCA+GGG + chr1_4:40332532-40332551 None:intergenic 55.0%
TACCAATCCTGCAAGGTCCG+GGG - chr1_4:40332636-40332655 Msa0162810:intron 55.0%
TACCAATCCTGCAAGGTCCG+GGG + chr1_4:40332636-40332655 None:intergenic 55.0%
TACCAATCCTGCAAGGTCCG+GGG - chr1_4:40332636-40332655 Msa0162810:intron 55.0%
TACCAATCCTGCAAGGTCCG+GGG - chr1_4:40332636-40332655 Msa0162810:intron 55.0%
TTGTAGGGCTAGGGCAGTGT+AGG + chr1_4:40333457-40333476 None:intergenic 55.0%
GAAGGCCGTCAGAACCACCT+TGG + chr1_4:40331191-40331210 None:intergenic 60.0%
ACAAGGTTACCGGCGTGTGG+CGG + chr1_4:40331273-40331292 None:intergenic 60.0%
!! GGAAGTGTTGCCGGGGTGAT+TGG + chr1_4:40331313-40331332 None:intergenic 60.0%
!! TGGTGGAGGGAAGTGTTGCC+GGG + chr1_4:40331321-40331340 None:intergenic 60.0%
!! GTGGTGGAGGGAAGTGTTGC+CGG + chr1_4:40331322-40331341 None:intergenic 60.0%
TCACGCGCCACCACAGTTTG+TGG - chr1_4:40331362-40331381 Msa0162810:CDS 60.0%
CACGCGCCACCACAGTTTGT+GGG - chr1_4:40331363-40331382 Msa0162810:CDS 60.0%
ACGCGCCACCACAGTTTGTG+GGG - chr1_4:40331364-40331383 Msa0162810:CDS 60.0%
ACGCGCCGCTGAATTAGGGT+CGG + chr1_4:40331487-40331506 None:intergenic 60.0%
GCTTCACGCGCCGCTGAATT+AGG + chr1_4:40331492-40331511 None:intergenic 60.0%
TGAAGCCACACGCGCTACTC+AGG - chr1_4:40331506-40331525 Msa0162810:CDS 60.0%
GAAGCCACACGCGCTACTCA+GGG - chr1_4:40331507-40331526 Msa0162810:CDS 60.0%
AAGCCACACGCGCTACTCAG+GGG - chr1_4:40331508-40331527 Msa0162810:CDS 60.0%
ACATGCTCAAGGGTCAGGCG+AGG - chr1_4:40331545-40331564 Msa0162810:CDS 60.0%
ACGCGCGTGTTCCCATTGGT+GGG - chr1_4:40331568-40331587 Msa0162810:CDS 60.0%
! GCGTGTTCCCATTGGTGGGT+CGG - chr1_4:40331572-40331591 Msa0162810:CDS 60.0%
! CGTGTTCCCATTGGTGGGTC+GGG - chr1_4:40331573-40331592 Msa0162810:CDS 60.0%
GACGAACCCGACCCACCAAT+GGG + chr1_4:40331582-40331601 None:intergenic 60.0%
AGACGAACCCGACCCACCAA+TGG + chr1_4:40331583-40331602 None:intergenic 60.0%
GAACCCCTGCCACCACAATC+CGG - chr1_4:40332498-40332517 Msa0162810:intron 60.0%
AACCCCTGCCACCACAATCC+GGG - chr1_4:40332499-40332518 Msa0162810:intron 60.0%
AACCCCGGATTGTGGTGGCA+GGG + chr1_4:40332505-40332524 None:intergenic 60.0%
GTTCGAACCCCGGATTGTGG+TGG + chr1_4:40332510-40332529 None:intergenic 60.0%
AGGGTTCGAACCCCGGATTG+TGG + chr1_4:40332513-40332532 None:intergenic 60.0%
GATGGTCAGGGTTCGAACCC+CGG + chr1_4:40332520-40332539 None:intergenic 60.0%
GTTCGAACCCCGTGATGGTC+AGG + chr1_4:40332533-40332552 None:intergenic 60.0%
AACCCCGGACCTTGCAGGAT+TGG + chr1_4:40332704-40332723 None:intergenic 60.0%
AACCCCGGACCTTGCAGGAT+TGG - chr1_4:40332704-40332723 Msa0162810:intron 60.0%
AACCCCGGACCTTGCAGGAT+TGG + chr1_4:40332704-40332723 None:intergenic 60.0%
AACCCCGGACCTTGCAGGAT+TGG + chr1_4:40332704-40332723 None:intergenic 60.0%
!! GGTGGAGGGAAGTGTTGCCG+GGG + chr1_4:40331320-40331339 None:intergenic 65.0%
CGCGCCACCACAGTTTGTGG+GGG - chr1_4:40331365-40331384 Msa0162810:CDS 65.0%
GGGACCCCCACAAACTGTGG+TGG + chr1_4:40331372-40331391 None:intergenic 65.0%
AGCGGGACCCCCACAAACTG+TGG + chr1_4:40331375-40331394 None:intergenic 65.0%
GTTTGTGGGGGTCCCGCTCT+CGG - chr1_4:40331377-40331396 Msa0162810:CDS 65.0%
CCGCTGAATTAGGGTCGGCG+GGG + chr1_4:40331482-40331501 None:intergenic 65.0%
CCCCGCCGACCCTAATTCAG+CGG - chr1_4:40331479-40331498 Msa0162810:CDS 65.0%
GCCGCTGAATTAGGGTCGGC+GGG + chr1_4:40331483-40331502 None:intergenic 65.0%
CGCCGCTGAATTAGGGTCGG+CGG + chr1_4:40331484-40331503 None:intergenic 65.0%
GAGGACGCGCGTGTTCCCAT+TGG - chr1_4:40331564-40331583 Msa0162810:CDS 65.0%
GACGCGCGTGTTCCCATTGG+TGG - chr1_4:40331567-40331586 Msa0162810:CDS 65.0%
ACCCCTGCCACCACAATCCG+GGG - chr1_4:40332500-40332519 Msa0162810:intron 65.0%
ACCCCGGATTGTGGTGGCAG+GGG + chr1_4:40332504-40332523 None:intergenic 65.0%
GAACCCCGGATTGTGGTGGC+AGG + chr1_4:40332506-40332525 None:intergenic 65.0%
TCGGGGTTCGAACCCCGTGA+TGG + chr1_4:40332538-40332557 None:intergenic 65.0%
GTTCGAACCCCGGACCTTGC+AGG + chr1_4:40332699-40332718 None:intergenic 65.0%
GGTGGCTGAGGTTCGAACCC+CGG + chr1_4:40332689-40332708 None:intergenic 65.0%
GGTGGCTGAGGTTCGAACCC+CGG - chr1_4:40332689-40332708 Msa0162810:intron 65.0%
GTTCGAACCCCGGACCTTGC+AGG - chr1_4:40332699-40332718 Msa0162810:intron 65.0%
GTTCGAACCCCGGACCTTGC+AGG + chr1_4:40332699-40332718 None:intergenic 65.0%
GGTGGCTGAGGTTCGAACCC+CGG + chr1_4:40332689-40332708 None:intergenic 65.0%
GTTCGAACCCCGGACCTTGC+AGG + chr1_4:40332699-40332718 None:intergenic 65.0%
AAGGTCCGGGGTTCGAACCC+CGG - chr1_4:40332484-40332503 Msa0162810:intron 65.0%
AGGTTACCGGCGTGTGGCGG+CGG + chr1_4:40331270-40331289 None:intergenic 70.0%
CAGCCCCTGAGTAGCGCGTG+TGG + chr1_4:40331514-40331533 None:intergenic 70.0%
GGTGGCAGGGGTTCGAACCC+CGG + chr1_4:40332492-40332511 None:intergenic 70.0%
GGTGGCCGGGGTTCGAACCC+CGG + chr1_4:40332945-40332964 None:intergenic 75.0%
! TGGCGGCGGCTGCGGCGCGT+CGG + chr1_4:40331256-40331275 None:intergenic 85.0%
! CCGGCGTGTGGCGGCGGCTG+CGG + chr1_4:40331264-40331283 None:intergenic 85.0%
! CCGCAGCCGCCGCCACACGC+CGG - chr1_4:40331261-40331280 Msa0162810:intron 85.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 40329512 40335499 40329512 ID=Msa0162810;Name=Msa0162810
chr1_4 mRNA 40329512 40335499 40329512 ID=Msa0162810-mRNA-1;Parent=Msa0162810;Name=Msa0162810-mRNA-1;_AED=0.05;_eAED=0.05;_QI=420|0.83|0.85|1|0.5|0.42|7|549|665
chr1_4 exon 40329512 40330834 40329512 ID=Msa0162810-mRNA-1:exon:11672;Parent=Msa0162810-mRNA-1
chr1_4 exon 40330953 40331058 40330953 ID=Msa0162810-mRNA-1:exon:11671;Parent=Msa0162810-mRNA-1
chr1_4 exon 40331272 40331645 40331272 ID=Msa0162810-mRNA-1:exon:11670;Parent=Msa0162810-mRNA-1
chr1_4 exon 40333112 40333878 40333112 ID=Msa0162810-mRNA-1:exon:11669;Parent=Msa0162810-mRNA-1
chr1_4 exon 40334687 40334738 40334687 ID=Msa0162810-mRNA-1:exon:11668;Parent=Msa0162810-mRNA-1
chr1_4 exon 40334961 40335017 40334961 ID=Msa0162810-mRNA-1:exon:11667;Parent=Msa0162810-mRNA-1
chr1_4 exon 40335212 40335499 40335212 ID=Msa0162810-mRNA-1:exon:11666;Parent=Msa0162810-mRNA-1
chr1_4 five_prime_UTR 40335212 40335499 40335212 ID=Msa0162810-mRNA-1:five_prime_utr;Parent=Msa0162810-mRNA-1
chr1_4 five_prime_UTR 40334961 40335017 40334961 ID=Msa0162810-mRNA-1:five_prime_utr;Parent=Msa0162810-mRNA-1
chr1_4 five_prime_UTR 40334687 40334738 40334687 ID=Msa0162810-mRNA-1:five_prime_utr;Parent=Msa0162810-mRNA-1
chr1_4 five_prime_UTR 40333856 40333878 40333856 ID=Msa0162810-mRNA-1:five_prime_utr;Parent=Msa0162810-mRNA-1
chr1_4 CDS 40333112 40333855 40333112 ID=Msa0162810-mRNA-1:cds;Parent=Msa0162810-mRNA-1
chr1_4 CDS 40331272 40331645 40331272 ID=Msa0162810-mRNA-1:cds;Parent=Msa0162810-mRNA-1
chr1_4 CDS 40330953 40331058 40330953 ID=Msa0162810-mRNA-1:cds;Parent=Msa0162810-mRNA-1
chr1_4 CDS 40330061 40330834 40330061 ID=Msa0162810-mRNA-1:cds;Parent=Msa0162810-mRNA-1
chr1_4 three_prime_UTR 40329512 40330060 40329512 ID=Msa0162810-mRNA-1:three_prime_utr;Parent=Msa0162810-mRNA-1
Gene Sequence

>Msa0162810

ATGGCAACGTATTTTCATAATAATTCAGAAATCCAAGGTGGTTCTGACGGCCTTCAAACACTCATTTTCATGAATCCATCAGGTTACATCAATTACTCCGACGCGCCGCAGCCGCCGCCACACGCCGGTAACCTTGTTTTTCTCAACTCAGCTGCCAATCACCCCGGCAACACTTCCCTCCACCACCAACAACACCAGAACTTATCTCACGCGCCACCACAGTTTGTGGGGGTCCCGCTCTCGGCAGAACAATCAGTACATGGCCATCATGAGGTTTCTGCTTTGCATGGCTTCCCACCGCGCATGCAGTACAACATGTGGAACCCCGCCGACCCTAATTCAGCGGCGCGTGAAGCCACACGCGCTACTCAGGGGCTGTCATTAAGCTTACATGCTCAAGGGTCAGGCGAGGACGCGCGTGTTCCCATTGGTGGGTCGGGTTCGTCTGCTTCAAACGGCTGTGTTTCGGGGATACAGAGTGTGTTATTGAGTTCTAAGTATTTGAAAGCTACACAAGAATTACTTGATGAAGTTGTTAATGTTAATGGTGGGATTAAGGTTGAAAATGTTAAGAAGAGTTTTGAGAAAAATAAGGTTGTTGGAGAATCTTCAACTGCGGTTAGTGGAGAAGGTGGTTCTGTTGGTGGTGGTGATGGAAATGGGAAACGTAGCACTGAGTTATCAACTACTGAGAGACAAGAAATTCAGATGAAGAAAGCTAAGTTAATTAACATGCTTGATGAGGTGGAACAAAGATACAGACAATATCACAACCAAATGCAGATGGTGATTTCCTCGTTTGAACAAGTTGCAGGAATTGGTTCAGCAAGAACCTACACTGCCCTAGCCCTACAAACAATCTCCAAGCAATTTCGATGTTTAAAAGATGCAATTACCGGCCAAATTAGAGCTGCGAATAAGAGTTTGGGAGAAGATGATAGCTTTGGTGGCAAAATTGAAGGGTCTAGGCTCAAATATGTTGATCATCATTTAAGACAACAAAGAGCTATTCAACAATTGGGAATGATCCATCATAATGCTTGGAGACCTCAAAGAGGATTGCCCGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTTTTCGAACATTTTCTCCATCCGTCTTTTATTGGTTTTGTGCTGAAACAATATGAGTTTGATTTCAGTTATCCCAAGGATTCAGACAAACACATGCTTGCAAAACAAACAGGACTTACTAGGAGCCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGTCTTTGGAAACCAATGGTGGAGGAAATGTACATGGAAGAGATGAAGGATCAAGAGCTGAATGGTTCCGAGGACAACAAATCAAGCAAAAATACCGATGACGATCCTTCGATGAAAACACCAACTCCACAAGAAAGAGTTCCAACCTCGGAAACAGAATCCAAAAGTTTCAATTCCAAACAAGACATTCCTATGGTTTCAGTTTCAACACCATCAACTTCACCTATTGGTGTGAATGTTAGAAACAATTCAGGATTCAGCTTCACGGAACTTGATGGAATAACACAAGCAAGTCCAAAGCGAACGAGGAACCATGAAATTCTTCAATCACCGAATCATGTGAAGTCCAATGAAACAACAACTAATAATGAACAAATTTCAATGAAATTTGGTGATGATAGACAAAGTAGAGATGGTTATTGTTTCATGGGAAACCAAACTAATTTCATTGCTGGTTTCGGTCAATATCCAATGGAGGAAATCGGAAGATTTGATGCGGAACAATTTGCACCAAGGTTTTCAGGTAATAATAATGGTGTTTCACTCACTCTTGGTTTGCCTCATTGTGACACATTATCAGGAACACATCAAAGTTTTATGCCAAACCAAAACATTCAACTGGGAAGAAGATTGGACATTAGCGAAACAAATGAGTTTGGTGACTCTTCAGCTGCGTTTGAGAGTATCAACATGCAGAATCCAAAGAGGTTTGCCGCACAATTGTTACCGGATTTTGTGGCATAA
Protein sequence

>Msa0162810

MATYFHNNSEIQGGSDGLQTLIFMNPSGYINYSDAPQPPPHAGNLVFLNSAANHPGNTSLHHQQHQNLSHAPPQFVGVPLSAEQSVHGHHEVSALHGFPPRMQYNMWNPADPNSAAREATRATQGLSLSLHAQGSGEDARVPIGGSGSSASNGCVSGIQSVLLSSKYLKATQELLDEVVNVNGGIKVENVKKSFEKNKVVGESSTAVSGEGGSVGGGDGNGKRSTELSTTERQEIQMKKAKLINMLDEVEQRYRQYHNQMQMVISSFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEDDSFGGKIEGSRLKYVDHHLRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPSFIGFVLKQYEFDFSYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKDQELNGSEDNKSSKNTDDDPSMKTPTPQERVPTSETESKSFNSKQDIPMVSVSTPSTSPIGVNVRNNSGFSFTELDGITQASPKRTRNHEILQSPNHVKSNETTTNNEQISMKFGDDRQSRDGYCFMGNQTNFIAGFGQYPMEEIGRFDAEQFAPRFSGNNNGVSLTLGLPHCDTLSGTHQSFMPNQNIQLGRRLDISETNEFGDSSAAFESINMQNPKRFAAQLLPDFVA*