Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163810 | XP_013468035.1 | 94.030 | 268 | 10 | 4 | 1 | 266 | 1 | 264 | 6.79e-179 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163810 | sp|O34614|YTQB_BACSU | 36.957 | 184 | 107 | 3 | 77 | 258 | 4 | 180 | 2.84e-26 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163810 | A0A072VJS6 | 94.030 | 268 | 10 | 4 | 1 | 266 | 1 | 264 | 3.24e-179 | 503 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020630 | Msa0163810 | 0.825363 | 4.883487e-54 | -8.615850e-47 |
| Msa0032120 | Msa0163810 | 0.817192 | 3.745375e-52 | -8.615850e-47 |
| Msa0038350 | Msa0163810 | -0.827178 | 1.805825e-54 | -8.615850e-47 |
| Msa0059960 | Msa0163810 | -0.800411 | 1.459321e-48 | -8.615850e-47 |
| Msa0159750 | Msa0163810 | 0.824614 | 7.335205e-54 | -8.615850e-47 |
| Msa0163810 | Msa0168100 | 0.801709 | 7.923740e-49 | -8.615850e-47 |
| Msa0163810 | Msa0170680 | 0.812863 | 3.422156e-51 | -8.615850e-47 |
| Msa0163810 | Msa0183610 | 0.801699 | 7.961553e-49 | -8.615850e-47 |
| Msa0163810 | Msa0185700 | 0.802841 | 4.632641e-49 | -8.615850e-47 |
| Msa0163810 | Msa0207000 | 0.814376 | 1.590075e-51 | -8.615850e-47 |
| Msa0163810 | Msa0258670 | -0.802757 | 4.822290e-49 | -8.615850e-47 |
| Msa0163810 | Msa0298940 | 0.824081 | 9.791649e-54 | -8.615850e-47 |
| Msa0163810 | Msa0318270 | 0.804485 | 2.112242e-49 | -8.615850e-47 |
| Msa0163810 | Msa0318310 | 0.800205 | 1.607680e-48 | -8.615850e-47 |
| Msa0163810 | Msa0342200 | 0.836723 | 7.918237e-57 | -8.615850e-47 |
| Msa0163810 | Msa0437710 | 0.829574 | 4.771620e-55 | -8.615850e-47 |
| Msa0163810 | Msa0509970 | 0.833678 | 4.646172e-56 | -8.615850e-47 |
| Msa0163810 | Msa0516450 | 0.803943 | 2.738675e-49 | -8.615850e-47 |
| Msa0163810 | Msa0524050 | 0.814302 | 1.651358e-51 | -8.615850e-47 |
| Msa0163810 | Msa0524120 | 0.803279 | 3.760004e-49 | -8.615850e-47 |
| Msa0163810 | Msa0526640 | -0.823857 | 1.105368e-53 | -8.615850e-47 |
| Msa0163810 | Msa0546380 | 0.808415 | 3.132701e-50 | -8.615850e-47 |
| Msa0163810 | Msa0557680 | 0.830715 | 2.512770e-55 | -8.615850e-47 |
| Msa0163810 | Msa0575250 | 0.800396 | 1.469576e-48 | -8.615850e-47 |
| Msa0163810 | Msa0576420 | 0.804154 | 2.475931e-49 | -8.615850e-47 |
| Msa0163810 | Msa0619330 | 0.805816 | 1.112050e-49 | -8.615850e-47 |
| Msa0163810 | Msa0624730 | 0.805264 | 1.451512e-49 | -8.615850e-47 |
| Msa0163810 | Msa0647000 | 0.817787 | 2.750501e-52 | -8.615850e-47 |
| Msa0163810 | Msa0657670 | 0.813024 | 3.154692e-51 | -8.615850e-47 |
| Msa0163810 | Msa0707780 | 0.805434 | 1.337549e-49 | -8.615850e-47 |
| Msa0163810 | Msa0730180 | 0.820399 | 7.002348e-53 | -8.615850e-47 |
| Msa0163810 | Msa0756480 | 0.802404 | 5.701443e-49 | -8.615850e-47 |
| Msa0163810 | Msa0770430 | 0.815761 | 7.831504e-52 | -8.615850e-47 |
| Msa0163810 | Msa0792510 | 0.823180 | 1.590887e-53 | -8.615850e-47 |
| Msa0163810 | Msa0835510 | 0.801600 | 8.341516e-49 | -8.615850e-47 |
| Msa0163810 | Msa0837990 | 0.826754 | 2.280084e-54 | -8.615850e-47 |
| Msa0163810 | Msa0846640 | 0.805778 | 1.132818e-49 | -8.615850e-47 |
| Msa0163810 | Msa0925160 | 0.810034 | 1.408749e-50 | -8.615850e-47 |
| Msa0163810 | Msa0937940 | 0.802470 | 5.524369e-49 | -8.615850e-47 |
| Msa0163810 | Msa0961420 | -0.803803 | 2.927764e-49 | -8.615850e-47 |
| Msa0163810 | Msa0970050 | 0.804631 | 1.969101e-49 | -8.615850e-47 |
| Msa0163810 | Msa0980440 | 0.805470 | 1.314386e-49 | -8.615850e-47 |
| Msa0163810 | Msa1008490 | 0.813606 | 2.350406e-51 | -8.615850e-47 |
| Msa0163810 | Msa1036390 | 0.827201 | 1.783193e-54 | -8.615850e-47 |
| Msa0163810 | Msa1046610 | 0.808834 | 2.548815e-50 | -8.615850e-47 |
| Msa0163810 | Msa1073840 | 0.806835 | 6.783277e-50 | -8.615850e-47 |
| Msa0163810 | Msa1076680 | 0.816712 | 4.802103e-52 | -8.615850e-47 |
| Msa0163810 | Msa1140010 | 0.805496 | 1.297863e-49 | -8.615850e-47 |
| Msa0163810 | Msa1223460 | 0.830403 | 2.995889e-55 | -8.615850e-47 |
| Msa0163810 | Msa1254950 | 0.801604 | 8.324368e-49 | -8.615850e-47 |
| Msa0163810 | Msa1262310 | 0.805559 | 1.259038e-49 | -8.615850e-47 |
| Msa0163810 | Msa1264560 | 0.803524 | 3.346259e-49 | -8.615850e-47 |
| Msa0163810 | Msa1265960 | 0.804758 | 1.852523e-49 | -8.615850e-47 |
| Msa0163810 | Msa1280120 | 0.821982 | 3.021386e-53 | -8.615850e-47 |
| Msa0163810 | Msa1295690 | 0.802079 | 6.650390e-49 | -8.615850e-47 |
| Msa0163810 | Msa1309240 | 0.817423 | 3.323283e-52 | -8.615850e-47 |
| Msa0163810 | Msa1310110 | 0.800262 | 1.565365e-48 | -8.615850e-47 |
| Msa0163810 | Msa1329990 | 0.809513 | 1.823125e-50 | -8.615850e-47 |
| Msa0163810 | Msa1373950 | 0.826996 | 1.996331e-54 | -8.615850e-47 |
| Msa0163810 | Msa1385900 | 0.802909 | 4.484283e-49 | -8.615850e-47 |
| Msa0163810 | Msa1398480 | 0.805432 | 1.338808e-49 | -8.615850e-47 |
| Msa0163810 | Msa1418200 | 0.814640 | 1.389635e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163810 | MtrunA17_Chr1g0179071 | 94.030 | 268 | 10 | 4 | 1 | 266 | 1 | 264 | 0.0 | 503 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163810 | AT1G16445.1 | 66.204 | 216 | 71 | 1 | 53 | 266 | 57 | 272 | 3.45e-105 | 306 |
Find 60 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGACTGTATCCCCTTTC+TGG | 0.172785 | 1_4:+42151427 | None:intergenic |
| CACCTTAGCATTGCGCAATT+TGG | 0.227250 | 1_4:-42151379 | Msa0163810:CDS |
| CTTCCTCTTTGGAAAGAAAA+AGG | 0.243053 | 1_4:-42152849 | Msa0163810:CDS |
| TATCTTCGGAATAAGAAAAT+TGG | 0.250552 | 1_4:+42148275 | None:intergenic |
| AGATAAGACTTCACTGTTAC+TGG | 0.271461 | 1_4:-42151298 | Msa0163810:CDS |
| CTTACTAGTATTGTTAAATA+AGG | 0.281883 | 1_4:+42148198 | None:intergenic |
| AGAGAAGCAACATTGATTTC+TGG | 0.299262 | 1_4:+42153031 | None:intergenic |
| CAATATTTGCCATAGTAAAA+TGG | 0.299706 | 1_4:-42150584 | Msa0163810:CDS |
| AGGCTTGTTGCCTTCAACTT+AGG | 0.315106 | 1_4:-42149627 | Msa0163810:CDS |
| ACCTGAAAAGGGAGAATCTT+TGG | 0.326774 | 1_4:+42152959 | None:intergenic |
| CTAGATTGTCTGTTGAGAAT+TGG | 0.341283 | 1_4:-42148343 | Msa0163810:CDS |
| AAGATCAGAAACAACATTAC+TGG | 0.374699 | 1_4:-42149571 | Msa0163810:CDS |
| ATGTAAATGGGTACCTGAAA+AGG | 0.383836 | 1_4:+42152947 | None:intergenic |
| TTCAACTTAGGTTATCTTCC+GGG | 0.393992 | 1_4:-42149615 | Msa0163810:CDS |
| GCAAGCTACAAATGCTAAAT+CGG | 0.395482 | 1_4:-42148313 | Msa0163810:CDS |
| ACATCACTGTCTGTTTCAAT+TGG | 0.399010 | 1_4:+42153147 | None:intergenic |
| GCAGGTATTTACATTATCTT+CGG | 0.414582 | 1_4:+42148261 | None:intergenic |
| CTTCAACTTAGGTTATCTTC+CGG | 0.423144 | 1_4:-42149616 | Msa0163810:CDS |
| CTCAGTAGTCCTCACCTCAT+TGG | 0.433397 | 1_4:+42151260 | None:intergenic |
| CTGGAGATGTTGGTTGGAGA+AGG | 0.436964 | 1_4:+42153050 | None:intergenic |
| TGGAGAAAGAAGAAGATTGA+AGG | 0.442468 | 1_4:+42152979 | None:intergenic |
| TGTTGGTTGGAGAAGGAAGA+AGG | 0.450022 | 1_4:+42153057 | None:intergenic |
| TTAGCATAGTGGTTTATGTC+GGG | 0.463191 | 1_4:-42149506 | Msa0163810:CDS |
| GTTGCTGATGAGTCACATAA+TGG | 0.464226 | 1_4:-42151357 | Msa0163810:CDS |
| GGAAACATGTTGTCCAGAAA+GGG | 0.472733 | 1_4:-42151440 | Msa0163810:CDS |
| TGGAAACATGTTGTCCAGAA+AGG | 0.487044 | 1_4:-42151441 | Msa0163810:CDS |
| AAGAAATATTACCGTCCACC+AGG | 0.491363 | 1_4:+42149480 | None:intergenic |
| CGGAAGATAACCTAAGTTGA+AGG | 0.503757 | 1_4:+42149617 | None:intergenic |
| TTGGAGAAGGAAGAAGGAAG+AGG | 0.510509 | 1_4:+42153063 | None:intergenic |
| AAATCTGTCCAGGGAAGAGT+TGG | 0.515730 | 1_4:-42148387 | Msa0163810:intron |
| AACCAAATTGCGCAATGCTA+AGG | 0.516356 | 1_4:+42151377 | None:intergenic |
| CGGAATAAGAAAATTGGTAT+CGG | 0.518914 | 1_4:+42148281 | None:intergenic |
| TGTAAATGGGTACCTGAAAA+GGG | 0.523883 | 1_4:+42152948 | None:intergenic |
| TGATTTCTGGAGATGTTGGT+TGG | 0.525157 | 1_4:+42153044 | None:intergenic |
| ATTATTTCTTTGTCACCTCC+CGG | 0.527941 | 1_4:+42149597 | None:intergenic |
| AGGAGGGCTTATTAGCATAG+TGG | 0.534041 | 1_4:-42149517 | Msa0163810:CDS |
| TCTGTCCAGGGAAGAGTTGG+AGG | 0.535087 | 1_4:-42148384 | Msa0163810:intron |
| CAATCAAGAAATCATATAGC+AGG | 0.536717 | 1_4:+42148243 | None:intergenic |
| TTCAAAGCAATGCCTACGTT+AGG | 0.555593 | 1_4:-42150552 | Msa0163810:intron |
| ACATTGATTTCTGGAGATGT+TGG | 0.556359 | 1_4:+42153040 | None:intergenic |
| ATTAGCATAGTGGTTTATGT+CGG | 0.565881 | 1_4:-42149507 | Msa0163810:CDS |
| ACTATGCTAATAAGCCCTCC+TGG | 0.566809 | 1_4:+42149519 | None:intergenic |
| GTTTATGTCGGGCACCCTGG+TGG | 0.569259 | 1_4:-42149495 | Msa0163810:CDS |
| TAATGGTTATGTGTACGCAT+TGG | 0.580443 | 1_4:-42151340 | Msa0163810:CDS |
| ATTGATGCGACATGTGGCAA+CGG | 0.582874 | 1_4:-42151408 | Msa0163810:CDS |
| ATGTCGGGCACCCTGGTGGA+CGG | 0.586367 | 1_4:-42149491 | Msa0163810:intron |
| GTGGTTTATGTCGGGCACCC+TGG | 0.587189 | 1_4:-42149498 | Msa0163810:CDS |
| AATGTAGAGAGAATAAAGAG+AGG | 0.590705 | 1_4:+42148133 | None:intergenic |
| AAAATTGGTATCGGAGCACA+TGG | 0.594476 | 1_4:+42148290 | None:intergenic |
| GCAAAGAGAATTCTAATACC+AGG | 0.619973 | 1_4:-42149537 | Msa0163810:CDS |
| GAAACATGTTGTCCAGAAAG+GGG | 0.631913 | 1_4:-42151439 | Msa0163810:CDS |
| ACAGTCATTGATGCGACATG+TGG | 0.650161 | 1_4:-42151414 | Msa0163810:CDS |
| AGAAATATTACCGTCCACCA+GGG | 0.662031 | 1_4:+42149481 | None:intergenic |
| GAAAATTGAGTACCTAACGT+AGG | 0.670575 | 1_4:+42150540 | None:intergenic |
| AGAGAATTCTAATACCAGGA+GGG | 0.674542 | 1_4:-42149533 | Msa0163810:CDS |
| AACTTAGGTTATCTTCCGGG+AGG | 0.678013 | 1_4:-42149612 | Msa0163810:CDS |
| TATTTGCCATAGTAAAATGG+AGG | 0.679977 | 1_4:-42150581 | Msa0163810:CDS |
| AGTATTGTTAAATAAGGACA+AGG | 0.682690 | 1_4:+42148204 | None:intergenic |
| AAGAGAATTCTAATACCAGG+AGG | 0.699018 | 1_4:-42149534 | Msa0163810:CDS |
| AGAATCGCTTAGTTCCAATG+AGG | 0.719596 | 1_4:-42151274 | Msa0163810:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTATTATTATTTTGTTTAA+TGG | + | chr1_4:42148304-42148323 | None:intergenic | 10.0% |
| !!! | TTATACTTTTTTTTAACTTA+TGG | - | chr1_4:42149056-42149075 | Msa0163810:intron | 10.0% |
| !!! | TTATTTTCTTTATGTATTAT+TGG | - | chr1_4:42151560-42151579 | Msa0163810:intron | 10.0% |
| !!! | ATTCTTTTTTTTCTTTTTTT+TGG | - | chr1_4:42151845-42151864 | Msa0163810:intron | 10.0% |
| !!! | TTCTTTTTTTTCTTTTTTTT+GGG | - | chr1_4:42151846-42151865 | Msa0163810:intron | 10.0% |
| !!! | AAGATTTTTATGATGTAAAT+GGG | + | chr1_4:42148370-42148389 | None:intergenic | 15.0% |
| !! | AAAACATATTTATAAAGTGA+GGG | + | chr1_4:42150363-42150382 | None:intergenic | 15.0% |
| !! | TAAAACATATTTATAAAGTG+AGG | + | chr1_4:42150364-42150383 | None:intergenic | 15.0% |
| !! | TTTAGTAAAATTTAAGAGTT+TGG | + | chr1_4:42151177-42151196 | None:intergenic | 15.0% |
| !!! | GTTTTTATCAATAACTAATA+TGG | - | chr1_4:42151211-42151230 | Msa0163810:intron | 15.0% |
| !! | ATGAATAAAATGAAAGTAAA+AGG | - | chr1_4:42151375-42151394 | Msa0163810:CDS | 15.0% |
| !! | AATTAATTATATAATAGCTC+AGG | + | chr1_4:42151491-42151510 | None:intergenic | 15.0% |
| !!! | TAAAGAAAATAATTTTACCA+TGG | + | chr1_4:42151552-42151571 | None:intergenic | 15.0% |
| !!! | TCTTTTTTTTCTTTTTTTTG+GGG | - | chr1_4:42151847-42151866 | Msa0163810:intron | 15.0% |
| !!! | TATTGTTATTGAGTATAATA+AGG | - | chr1_4:42152042-42152061 | Msa0163810:intron | 15.0% |
| !!! | ATTGTTATTGAGTATAATAA+GGG | - | chr1_4:42152043-42152062 | Msa0163810:intron | 15.0% |
| !! | TATGATATATGTGTTTAATT+AGG | + | chr1_4:42152325-42152344 | None:intergenic | 15.0% |
| !!! | ATTTAAAATCAATTAACAAC+AGG | + | chr1_4:42152824-42152843 | None:intergenic | 15.0% |
| !!! | GATTTTAAATAACTCATTTT+TGG | - | chr1_4:42152834-42152853 | Msa0163810:CDS | 15.0% |
| !!! | AGATTTAAAAGCATTATTAT+TGG | + | chr1_4:42152901-42152920 | None:intergenic | 15.0% |
| !!! | CAAGATTTTTATGATGTAAA+TGG | + | chr1_4:42148371-42148390 | None:intergenic | 20.0% |
| !!! | ATTACATTAAACTCAGTTTT+AGG | + | chr1_4:42148568-42148587 | None:intergenic | 20.0% |
| !!! | TAATTATATAGATTTGCTTG+AGG | - | chr1_4:42148795-42148814 | Msa0163810:intron | 20.0% |
| !! | CAAATTCTAATATGGTATTA+GGG | - | chr1_4:42148869-42148888 | Msa0163810:intron | 20.0% |
| !!! | TTTTTAACTTATGGAATGTT+TGG | - | chr1_4:42149065-42149084 | Msa0163810:intron | 20.0% |
| !! | AAAAACAATAACTCATATCA+AGG | + | chr1_4:42149826-42149845 | None:intergenic | 20.0% |
| !! | AAACATATTTATAAAGTGAG+GGG | + | chr1_4:42150362-42150381 | None:intergenic | 20.0% |
| !! | CTGAAAATATCAATATACAA+CGG | + | chr1_4:42150482-42150501 | None:intergenic | 20.0% |
| !! | GTAAAATATATTAGTGAGTA+TGG | + | chr1_4:42150864-42150883 | None:intergenic | 20.0% |
| !!! | TTTATTCATCTTTTCTTCAA+TGG | + | chr1_4:42151314-42151333 | None:intergenic | 20.0% |
| !!! | TTGTTATTGAGTATAATAAG+GGG | - | chr1_4:42152044-42152063 | Msa0163810:intron | 20.0% |
| !! | AATCAAAACATTATTGCTTA+AGG | + | chr1_4:42152077-42152096 | None:intergenic | 20.0% |
| !! | AGGTTGAAAGTTAAATATTT+GGG | + | chr1_4:42152170-42152189 | None:intergenic | 20.0% |
| !!! | TAGGTTGAAAGTTAAATATT+TGG | + | chr1_4:42152171-42152190 | None:intergenic | 20.0% |
| !!! | ATTGTTTTGTTTCATTAGTT+TGG | - | chr1_4:42152210-42152229 | Msa0163810:intron | 20.0% |
| !!! | TGTTGCTTTTGATTTTTTAA+TGG | - | chr1_4:42152238-42152257 | Msa0163810:intron | 20.0% |
| !! | TTAAATAAGTCAATCCAAAT+TGG | - | chr1_4:42152538-42152557 | Msa0163810:intron | 20.0% |
| !! | ATAAATATGACACATATGTA+AGG | - | chr1_4:42152695-42152714 | Msa0163810:intron | 20.0% |
| !! | ATGATACTAGTATCTTAAAA+TGG | - | chr1_4:42152790-42152809 | Msa0163810:intron | 20.0% |
| !! | CTTACTAGTATTGTTAAATA+AGG | + | chr1_4:42153107-42153126 | None:intergenic | 20.0% |
| ! | AAACCTGAAAACATGAAAAA+GGG | + | chr1_4:42148415-42148434 | None:intergenic | 25.0% |
| ! | TAAACCTGAAAACATGAAAA+AGG | + | chr1_4:42148416-42148435 | None:intergenic | 25.0% |
| ! | CATATTAGAATTTGGATTTC+AGG | + | chr1_4:42148863-42148882 | None:intergenic | 25.0% |
| ! | CTGAAATCCAAATTCTAATA+TGG | - | chr1_4:42148861-42148880 | Msa0163810:intron | 25.0% |
| ! | CCTAATACCATATTAGAATT+TGG | + | chr1_4:42148871-42148890 | None:intergenic | 25.0% |
| ! | CCAAATTCTAATATGGTATT+AGG | - | chr1_4:42148868-42148887 | Msa0163810:intron | 25.0% |
| ! | AGGGCCTATAATAAATTTAT+TGG | - | chr1_4:42148888-42148907 | Msa0163810:intron | 25.0% |
| ! | GGGCCTATAATAAATTTATT+GGG | - | chr1_4:42148889-42148908 | Msa0163810:intron | 25.0% |
| ! | TGGCCCAATAAATTTATTAT+AGG | + | chr1_4:42148895-42148914 | None:intergenic | 25.0% |
| ! | TATGAATAGTGACTATATGA+AGG | - | chr1_4:42148967-42148986 | Msa0163810:intron | 25.0% |
| ! | ATGAATAGTGACTATATGAA+GGG | - | chr1_4:42148968-42148987 | Msa0163810:intron | 25.0% |
| ! | ATCCAATCAAAATTCTAATG+AGG | - | chr1_4:42149033-42149052 | Msa0163810:intron | 25.0% |
| !!! | AACCTCATTAGAATTTTGAT+TGG | + | chr1_4:42149038-42149057 | None:intergenic | 25.0% |
| ! | AGAGTGAAAAATTTCATTTC+AGG | + | chr1_4:42149220-42149239 | None:intergenic | 25.0% |
| ! | TAAGAAGTCATAATCATTTG+TGG | - | chr1_4:42149567-42149586 | Msa0163810:CDS | 25.0% |
| !!! | TTATTGTTTTTGTTCCTACT+AGG | - | chr1_4:42149835-42149854 | Msa0163810:intron | 25.0% |
| !!! | TATTGTTTTTGTTCCTACTA+GGG | - | chr1_4:42149836-42149855 | Msa0163810:intron | 25.0% |
| ! | TTAACAGAATGAGCATTAAA+AGG | + | chr1_4:42150649-42150668 | None:intergenic | 25.0% |
| ! | CAATATTTGCCATAGTAAAA+TGG | - | chr1_4:42150718-42150737 | Msa0163810:intron | 25.0% |
| ! | AATATGTGTAAATAGTCACA+TGG | - | chr1_4:42150979-42150998 | Msa0163810:intron | 25.0% |
| ! | AAATGGAACAAATCAAATGT+TGG | + | chr1_4:42151067-42151086 | None:intergenic | 25.0% |
| !!! | AACATTTGATTTGTTCCATT+TGG | - | chr1_4:42151066-42151085 | Msa0163810:intron | 25.0% |
| ! | TGATAAAAACTGTATAGCTA+AGG | + | chr1_4:42151201-42151220 | None:intergenic | 25.0% |
| !! | TTTTATGAGAAAATACCTGA+TGG | + | chr1_4:42151245-42151264 | None:intergenic | 25.0% |
| !! | ATACAATGATTTTCATTCAC+TGG | - | chr1_4:42151341-42151360 | Msa0163810:CDS | 25.0% |
| ! | TTATATAATAGCTCAGGTTA+TGG | + | chr1_4:42151485-42151504 | None:intergenic | 25.0% |
| ! | AAGCATTTCTTGAAACTTTA+AGG | - | chr1_4:42151612-42151631 | Msa0163810:intron | 25.0% |
| !! | TTAAGCTCTGTTTTGTATAT+AGG | - | chr1_4:42151955-42151974 | Msa0163810:intron | 25.0% |
| ! | AAAACATTATTGCTTAAGGA+GGG | + | chr1_4:42152073-42152092 | None:intergenic | 25.0% |
| ! | GGTTGAAAGTTAAATATTTG+GGG | + | chr1_4:42152169-42152188 | None:intergenic | 25.0% |
| !! | AATATATTTAGTCCCTGTTT+TGG | - | chr1_4:42152292-42152311 | Msa0163810:intron | 25.0% |
| ! | TTATAGTATCCATTGCAAAA+TGG | - | chr1_4:42152573-42152592 | Msa0163810:intron | 25.0% |
| ! | ATACTAGTATCTTAAAATGG+AGG | - | chr1_4:42152793-42152812 | Msa0163810:intron | 25.0% |
| ! | TATCTTCGGAATAAGAAAAT+TGG | + | chr1_4:42153030-42153049 | None:intergenic | 25.0% |
| ! | AGTATTGTTAAATAAGGACA+AGG | + | chr1_4:42153101-42153120 | None:intergenic | 25.0% |
| !! | ATACCCTTTTTCATGTTTTC+AGG | - | chr1_4:42148409-42148428 | Msa0163810:intron | 30.0% |
| TACTTTACTTGATGCATCTT+TGG | - | chr1_4:42148511-42148530 | Msa0163810:intron | 30.0% | |
| ATGTAGAGAATCAATAACCA+TGG | + | chr1_4:42148627-42148646 | None:intergenic | 30.0% | |
| ! | TTATATAGATTTGCTTGAGG+CGG | - | chr1_4:42148798-42148817 | Msa0163810:intron | 30.0% |
| TTAGTCGTAGAATTGATAGA+AGG | - | chr1_4:42148827-42148846 | Msa0163810:intron | 30.0% | |
| TGAATAGTGACTATATGAAG+GGG | - | chr1_4:42148969-42148988 | Msa0163810:intron | 30.0% | |
| !! | AATGTTTGGATGAAGTGTTT+TGG | - | chr1_4:42149079-42149098 | Msa0163810:intron | 30.0% |
| !! | ATGTTTGGATGAAGTGTTTT+GGG | - | chr1_4:42149080-42149099 | Msa0163810:intron | 30.0% |
| TATGAAACTACATAAGAGCA+AGG | - | chr1_4:42149161-42149180 | Msa0163810:intron | 30.0% | |
| TTAAAACCCTCGTTTGAATA+AGG | - | chr1_4:42149253-42149272 | Msa0163810:intron | 30.0% | |
| ACATAAAAAGAACCCTCTAA+AGG | + | chr1_4:42149611-42149630 | None:intergenic | 30.0% | |
| !! | TCATTGATTCTATAGTAGCT+TGG | - | chr1_4:42149645-42149664 | Msa0163810:intron | 30.0% |
| TGAAGGTTTCAACTTTCAAT+TGG | - | chr1_4:42150068-42150087 | Msa0163810:intron | 30.0% | |
| TTTGATCATTTATAGCAGGA+TGG | + | chr1_4:42150559-42150578 | None:intergenic | 30.0% | |
| TCAGTTTGATCATTTATAGC+AGG | + | chr1_4:42150563-42150582 | None:intergenic | 30.0% | |
| !! | CAGTATTGAATTCTAGAACT+AGG | - | chr1_4:42150617-42150636 | Msa0163810:intron | 30.0% |
| TATTTGCCATAGTAAAATGG+AGG | - | chr1_4:42150721-42150740 | Msa0163810:intron | 30.0% | |
| AAATTTAAGAGTTTGGTCCA+CGG | + | chr1_4:42151170-42151189 | None:intergenic | 30.0% | |
| TAATATGCTGCAATACATGT+AGG | - | chr1_4:42151655-42151674 | Msa0163810:intron | 30.0% | |
| AAGATCAGAAACAACATTAC+TGG | - | chr1_4:42151731-42151750 | Msa0163810:intron | 30.0% | |
| ATTAGCATAGTGGTTTATGT+CGG | - | chr1_4:42151795-42151814 | Msa0163810:intron | 30.0% | |
| TACTTCAAACATAGAAAACC+AGG | + | chr1_4:42151933-42151952 | None:intergenic | 30.0% | |
| CAAAACATTATTGCTTAAGG+AGG | + | chr1_4:42152074-42152093 | None:intergenic | 30.0% | |
| GGCTAGTAAATACAATAGAT+TGG | - | chr1_4:42152259-42152278 | Msa0163810:intron | 30.0% | |
| GAGTCATCATGTTTAAACAA+CGG | - | chr1_4:42152603-42152622 | Msa0163810:intron | 30.0% | |
| AGTCATCATGTTTAAACAAC+GGG | - | chr1_4:42152604-42152623 | Msa0163810:intron | 30.0% | |
| AATATGTCAAGTCTTGGATT+TGG | - | chr1_4:42152654-42152673 | Msa0163810:intron | 30.0% | |
| AGATACTAGTATCATTCCAT+TGG | + | chr1_4:42152785-42152804 | None:intergenic | 30.0% | |
| ! | TAATGCTTTTAAATCTGTCC+AGG | - | chr1_4:42152905-42152924 | Msa0163810:intron | 30.0% |
| ! | AATGCTTTTAAATCTGTCCA+GGG | - | chr1_4:42152906-42152925 | Msa0163810:intron | 30.0% |
| CGGAATAAGAAAATTGGTAT+CGG | + | chr1_4:42153024-42153043 | None:intergenic | 30.0% | |
| GCAGGTATTTACATTATCTT+CGG | + | chr1_4:42153044-42153063 | None:intergenic | 30.0% | |
| CAATCAAGAAATCATATAGC+AGG | + | chr1_4:42153062-42153081 | None:intergenic | 30.0% | |
| AATGTAGAGAGAATAAAGAG+AGG | + | chr1_4:42153172-42153191 | None:intergenic | 30.0% | |
| ACATCACTGTCTGTTTCAAT+TGG | + | chr1_4:42148158-42148177 | None:intergenic | 35.0% | |
| !! | ACATTGATTTCTGGAGATGT+TGG | + | chr1_4:42148265-42148284 | None:intergenic | 35.0% |
| !! | AGAGAAGCAACATTGATTTC+TGG | + | chr1_4:42148274-42148293 | None:intergenic | 35.0% |
| TGGAGAAAGAAGAAGATTGA+AGG | + | chr1_4:42148326-42148345 | None:intergenic | 35.0% | |
| TGTAAATGGGTACCTGAAAA+GGG | + | chr1_4:42148357-42148376 | None:intergenic | 35.0% | |
| ATGTAAATGGGTACCTGAAA+AGG | + | chr1_4:42148358-42148377 | None:intergenic | 35.0% | |
| ! | CTTCCTCTTTGGAAAGAAAA+AGG | - | chr1_4:42148453-42148472 | Msa0163810:intron | 35.0% |
| ! | TTGCCTTTTTCTTTCCAAAG+AGG | + | chr1_4:42148459-42148478 | None:intergenic | 35.0% |
| TTGTTCTTACTTCACCTCAT+TGG | - | chr1_4:42148594-42148613 | Msa0163810:intron | 35.0% | |
| AGATGTTGAGAGTTTCACAT+GGG | - | chr1_4:42148937-42148956 | Msa0163810:intron | 35.0% | |
| !! | TGTTTGGATGAAGTGTTTTG+GGG | - | chr1_4:42149081-42149100 | Msa0163810:intron | 35.0% |
| AGCAAGGACATTACATTTCA+CGG | - | chr1_4:42149177-42149196 | Msa0163810:intron | 35.0% | |
| !!! | AAACGAGGGTTTTAAAGAGA+AGG | + | chr1_4:42149248-42149267 | None:intergenic | 35.0% |
| GCAAAACCTTATTCAAACGA+GGG | + | chr1_4:42149262-42149281 | None:intergenic | 35.0% | |
| AGCAAAACCTTATTCAAACG+AGG | + | chr1_4:42149263-42149282 | None:intergenic | 35.0% | |
| !!! | TTTTTTGTCATGTAGCCTAG+TGG | - | chr1_4:42149308-42149327 | Msa0163810:intron | 35.0% |
| TTCCCACTTATTCACCTTAA+GGG | + | chr1_4:42149345-42149364 | None:intergenic | 35.0% | |
| TTTCCCACTTATTCACCTTA+AGG | + | chr1_4:42149346-42149365 | None:intergenic | 35.0% | |
| TCTCTTTGCTTTACCTTTAG+AGG | - | chr1_4:42149595-42149614 | Msa0163810:CDS | 35.0% | |
| CTCTTTGCTTTACCTTTAGA+GGG | - | chr1_4:42149596-42149615 | Msa0163810:CDS | 35.0% | |
| !! | ACATTTTCCACATTTGTTGC+AGG | - | chr1_4:42149684-42149703 | Msa0163810:intron | 35.0% |
| ! | TTTTTGTTCCTACTAGGGTA+TGG | - | chr1_4:42149841-42149860 | Msa0163810:intron | 35.0% |
| TAATGGTTATGTGTACGCAT+TGG | - | chr1_4:42149962-42149981 | Msa0163810:intron | 35.0% | |
| AGATAAGACTTCACTGTTAC+TGG | - | chr1_4:42150004-42150023 | Msa0163810:intron | 35.0% | |
| TTTCAATTGGTGTAGAGTGT+GGG | - | chr1_4:42150081-42150100 | Msa0163810:intron | 35.0% | |
| !!! | TGTTTTAAAAAAGGGCAACC+CGG | - | chr1_4:42150174-42150193 | Msa0163810:intron | 35.0% |
| CTTGTGTAAAAAACAGGGTA+AGG | + | chr1_4:42150266-42150285 | None:intergenic | 35.0% | |
| !!! | TACCCTGTTTTTTACACAAG+AGG | - | chr1_4:42150266-42150285 | Msa0163810:intron | 35.0% |
| AGCCTCTTGTGTAAAAAACA+GGG | + | chr1_4:42150271-42150290 | None:intergenic | 35.0% | |
| ! | CAACTTCCTCCATTTTACTA+TGG | + | chr1_4:42150730-42150749 | None:intergenic | 35.0% |
| GAAAATTGAGTACCTAACGT+AGG | + | chr1_4:42150765-42150784 | None:intergenic | 35.0% | |
| GTGAAACAAAGTTGGAATTG+AGG | + | chr1_4:42150932-42150951 | None:intergenic | 35.0% | |
| ACATGCAAGTGAAACAAAGT+TGG | + | chr1_4:42150940-42150959 | None:intergenic | 35.0% | |
| !! | TTGATTTGTTCCATTTGGAG+CGG | - | chr1_4:42151071-42151090 | Msa0163810:intron | 35.0% |
| ! | TCATCTTTTCTTCAATGGTG+AGG | + | chr1_4:42151309-42151328 | None:intergenic | 35.0% |
| CTTCAACTTAGGTTATCTTC+CGG | - | chr1_4:42151686-42151705 | Msa0163810:intron | 35.0% | |
| TTCAACTTAGGTTATCTTCC+GGG | - | chr1_4:42151687-42151706 | Msa0163810:intron | 35.0% | |
| ! | ATTATTTCTTTGTCACCTCC+CGG | + | chr1_4:42151708-42151727 | None:intergenic | 35.0% |
| GCAAAGAGAATTCTAATACC+AGG | - | chr1_4:42151765-42151784 | Msa0163810:intron | 35.0% | |
| AAGAGAATTCTAATACCAGG+AGG | - | chr1_4:42151768-42151787 | Msa0163810:intron | 35.0% | |
| AGAGAATTCTAATACCAGGA+GGG | - | chr1_4:42151769-42151788 | Msa0163810:intron | 35.0% | |
| TTAGCATAGTGGTTTATGTC+GGG | - | chr1_4:42151796-42151815 | Msa0163810:intron | 35.0% | |
| ACATAGAAAACCAGGATGTT+TGG | + | chr1_4:42151925-42151944 | None:intergenic | 35.0% | |
| ! | GGCACATAAAGTATCAAACT+TGG | + | chr1_4:42152129-42152148 | None:intergenic | 35.0% |
| ! | TAAATACAATAGATTGGCCG+TGG | - | chr1_4:42152265-42152284 | Msa0163810:intron | 35.0% |
| ! | AAATACAATAGATTGGCCGT+GGG | - | chr1_4:42152266-42152285 | Msa0163810:intron | 35.0% |
| GACTAAATATATTGCTCCCA+CGG | + | chr1_4:42152285-42152304 | None:intergenic | 35.0% | |
| TTAGGCTGTTTACCAAAACA+GGG | + | chr1_4:42152307-42152326 | None:intergenic | 35.0% | |
| ATTAGGCTGTTTACCAAAAC+AGG | + | chr1_4:42152308-42152327 | None:intergenic | 35.0% | |
| GTAGTGTTATAGAGAGCTTA+TGG | - | chr1_4:42152447-42152466 | Msa0163810:intron | 35.0% | |
| AGATGGTTTAAGAGAGCTTA+TGG | + | chr1_4:42152491-42152510 | None:intergenic | 35.0% | |
| ! | GTCTAGAATATGTCAAGTCT+TGG | - | chr1_4:42152648-42152667 | Msa0163810:intron | 35.0% |
| ! | AAGTCTTGGATTTGGAACAT+CGG | - | chr1_4:42152662-42152681 | Msa0163810:intron | 35.0% |
| ! | TCAGATTTGGTAAATGCCAA+TGG | - | chr1_4:42152766-42152785 | Msa0163810:intron | 35.0% |
| TTGGCTTCAATTAACATGCT+TGG | - | chr1_4:42152853-42152872 | Msa0163810:CDS | 35.0% | |
| CTAGATTGTCTGTTGAGAAT+TGG | - | chr1_4:42152959-42152978 | Msa0163810:intron | 35.0% | |
| GCAAGCTACAAATGCTAAAT+CGG | - | chr1_4:42152989-42153008 | Msa0163810:CDS | 35.0% | |
| ! | TGATTTCTGGAGATGTTGGT+TGG | + | chr1_4:42148261-42148280 | None:intergenic | 40.0% |
| ! | TCCAAAGATTCTCCCTTTTC+AGG | - | chr1_4:42148342-42148361 | Msa0163810:CDS | 40.0% |
| ACCTGAAAAGGGAGAATCTT+TGG | + | chr1_4:42148346-42148365 | None:intergenic | 40.0% | |
| ! | GTTTTTGTGAGCTTCCTCTT+TGG | - | chr1_4:42148442-42148461 | Msa0163810:intron | 40.0% |
| ! | ACCTCATTGGTTAAATGCCA+TGG | - | chr1_4:42148607-42148626 | Msa0163810:intron | 40.0% |
| ACCATGGCATTTAACCAATG+AGG | + | chr1_4:42148611-42148630 | None:intergenic | 40.0% | |
| GAGATGTTGAGAGTTTCACA+TGG | - | chr1_4:42148936-42148955 | Msa0163810:intron | 40.0% | |
| !!! | TGAAGTGTTTTGGGGAAAGA+TGG | - | chr1_4:42149089-42149108 | Msa0163810:intron | 40.0% |
| !!! | GTTTTGGGGAAAGATGGAAT+TGG | - | chr1_4:42149095-42149114 | Msa0163810:intron | 40.0% |
| TGGCTAGAAATTCACCCTTA+AGG | - | chr1_4:42149328-42149347 | Msa0163810:intron | 40.0% | |
| TCACCCTTAAGGTGAATAAG+TGG | - | chr1_4:42149339-42149358 | Msa0163810:intron | 40.0% | |
| CACCCTTAAGGTGAATAAGT+GGG | - | chr1_4:42149340-42149359 | Msa0163810:intron | 40.0% | |
| AGGTGAATAAGTGGGAAATC+CGG | - | chr1_4:42149348-42149367 | Msa0163810:intron | 40.0% | |
| GGACATCACATTCTATATGC+AGG | + | chr1_4:42149390-42149409 | None:intergenic | 40.0% | |
| ATAGACTCCTGCAACAAATG+TGG | + | chr1_4:42149694-42149713 | None:intergenic | 40.0% | |
| ! | CATTTGTTGCAGGAGTCTAT+TGG | - | chr1_4:42149694-42149713 | Msa0163810:intron | 40.0% |
| ACATGTTTCCATACCCTAGT+AGG | + | chr1_4:42149852-42149871 | None:intergenic | 40.0% | |
| TGGAAACATGTTGTCCAGAA+AGG | - | chr1_4:42149861-42149880 | Msa0163810:intron | 40.0% | |
| GGAAACATGTTGTCCAGAAA+GGG | - | chr1_4:42149862-42149881 | Msa0163810:intron | 40.0% | |
| GAAACATGTTGTCCAGAAAG+GGG | - | chr1_4:42149863-42149882 | Msa0163810:intron | 40.0% | |
| AACCAAATTGCGCAATGCTA+AGG | + | chr1_4:42149928-42149947 | None:intergenic | 40.0% | |
| GTTGCTGATGAGTCACATAA+TGG | - | chr1_4:42149945-42149964 | Msa0163810:intron | 40.0% | |
| AGAATCGCTTAGTTCCAATG+AGG | - | chr1_4:42150028-42150047 | Msa0163810:intron | 40.0% | |
| CTTTCAATTGGTGTAGAGTG+TGG | - | chr1_4:42150080-42150099 | Msa0163810:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr1_4:42150240-42150259 | None:intergenic | 40.0% | |
| CAGCCTCTTGTGTAAAAAAC+AGG | + | chr1_4:42150272-42150291 | None:intergenic | 40.0% | |
| TATAAAGTGAGGGGTAACCT+TGG | + | chr1_4:42150353-42150372 | None:intergenic | 40.0% | |
| CAGAAAATATCACCGCAAAC+CGG | - | chr1_4:42150451-42150470 | Msa0163810:intron | 40.0% | |
| TCAATATACAACGGCTTGTC+CGG | + | chr1_4:42150473-42150492 | None:intergenic | 40.0% | |
| TTCAAAGCAATGCCTACGTT+AGG | - | chr1_4:42150750-42150769 | Msa0163810:intron | 40.0% | |
| CAGAGAGATGATGCAAGTTA+AGG | + | chr1_4:42150787-42150806 | None:intergenic | 40.0% | |
| AATATGGATCTCACTCCATC+AGG | - | chr1_4:42151227-42151246 | Msa0163810:intron | 40.0% | |
| ! | TTTTCTTCAATGGTGAGGCT+TGG | + | chr1_4:42151304-42151323 | None:intergenic | 40.0% |
| ! | CGGAAGATAACCTAAGTTGA+AGG | + | chr1_4:42151688-42151707 | None:intergenic | 40.0% |
| AGAAATATTACCGTCCACCA+GGG | + | chr1_4:42151824-42151843 | None:intergenic | 40.0% | |
| AAGAAATATTACCGTCCACC+AGG | + | chr1_4:42151825-42151844 | None:intergenic | 40.0% | |
| CTTTGTATTGCCAAACATCC+TGG | - | chr1_4:42151912-42151931 | Msa0163810:intron | 40.0% | |
| AACCTAGTCTGTTAACACAC+TGG | - | chr1_4:42152185-42152204 | Msa0163810:intron | 40.0% | |
| TACCAGTGTGTTAACAGACT+AGG | + | chr1_4:42152190-42152209 | None:intergenic | 40.0% | |
| ! | AGTCAATCCAAATTGGCTCT+TGG | - | chr1_4:42152545-42152564 | Msa0163810:intron | 40.0% |
| AAACACACCAAGAGCCAATT+TGG | + | chr1_4:42152555-42152574 | None:intergenic | 40.0% | |
| TCCATTGCAAAATGGCTGAT+TGG | - | chr1_4:42152581-42152600 | Msa0163810:intron | 40.0% | |
| !! | TCCAATCAGCCATTTTGCAA+TGG | + | chr1_4:42152585-42152604 | None:intergenic | 40.0% |
| TGTATCTCTCACTACAGAAG+AGG | - | chr1_4:42152739-42152758 | Msa0163810:intron | 40.0% | |
| CAGAAGAGGCAAATCAGATT+TGG | - | chr1_4:42152753-42152772 | Msa0163810:intron | 40.0% | |
| ! | AAAATTGGTATCGGAGCACA+TGG | + | chr1_4:42153015-42153034 | None:intergenic | 40.0% |
| TTGGAGAAGGAAGAAGGAAG+AGG | + | chr1_4:42148242-42148261 | None:intergenic | 45.0% | |
| ! | TGTTGGTTGGAGAAGGAAGA+AGG | + | chr1_4:42148248-42148267 | None:intergenic | 45.0% |
| TTGGGGAAAGATGGAATTGG+CGG | - | chr1_4:42149098-42149117 | Msa0163810:intron | 45.0% | |
| !! | AGGGTGAATTTCTAGCCACT+AGG | + | chr1_4:42149326-42149345 | None:intergenic | 45.0% |
| GGTGAATAAGTGGGAAATCC+GGG | - | chr1_4:42149349-42149368 | Msa0163810:intron | 45.0% | |
| GTGAATAAGTGGGAAATCCG+GGG | - | chr1_4:42149350-42149369 | Msa0163810:intron | 45.0% | |
| ACATTCTATATGCAGGTGCC+GGG | + | chr1_4:42149383-42149402 | None:intergenic | 45.0% | |
| CACATTCTATATGCAGGTGC+CGG | + | chr1_4:42149384-42149403 | None:intergenic | 45.0% | |
| !! | GAGCATAGCTCAAGTTGGTA+GGG | + | chr1_4:42149411-42149430 | None:intergenic | 45.0% |
| !! | TGAGCATAGCTCAAGTTGGT+AGG | + | chr1_4:42149412-42149431 | None:intergenic | 45.0% |
| TGTGTGAGCATAGCTCAAGT+TGG | + | chr1_4:42149416-42149435 | None:intergenic | 45.0% | |
| TGCAGGAGTCTATTGGCAAA+TGG | - | chr1_4:42149701-42149720 | Msa0163810:intron | 45.0% | |
| GCAGGAGTCTATTGGCAAAT+GGG | - | chr1_4:42149702-42149721 | Msa0163810:intron | 45.0% | |
| CAATGACTGTATCCCCTTTC+TGG | + | chr1_4:42149878-42149897 | None:intergenic | 45.0% | |
| ACAGTCATTGATGCGACATG+TGG | - | chr1_4:42149888-42149907 | Msa0163810:intron | 45.0% | |
| ATTGATGCGACATGTGGCAA+CGG | - | chr1_4:42149894-42149913 | Msa0163810:intron | 45.0% | |
| CACCTTAGCATTGCGCAATT+TGG | - | chr1_4:42149923-42149942 | Msa0163810:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr1_4:42150241-42150260 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr1_4:42150244-42150263 | None:intergenic | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr1_4:42150277-42150296 | Msa0163810:intron | 45.0% |
| GTTGTTGTCATGTGACCGAA+AGG | + | chr1_4:42150317-42150336 | None:intergenic | 45.0% | |
| CAACTTTACCAGTTGTGCCA+AGG | - | chr1_4:42150333-42150352 | Msa0163810:intron | 45.0% | |
| CTCACATTGCGTCACATGAA+TGG | - | chr1_4:42151002-42151021 | Msa0163810:intron | 45.0% | |
| CATTGCGTCACATGAATGGT+CGG | - | chr1_4:42151006-42151025 | Msa0163810:intron | 45.0% | |
| ATTGCGTCACATGAATGGTC+GGG | - | chr1_4:42151007-42151026 | Msa0163810:intron | 45.0% | |
| !! | CGGGCTTTAGAGGATGATTA+TGG | - | chr1_4:42151026-42151045 | Msa0163810:intron | 45.0% |
| TTTGAATTGAGAAGCCTCCG+TGG | - | chr1_4:42151150-42151169 | Msa0163810:intron | 45.0% | |
| TTTAAGAGTTTGGTCCACGG+AGG | + | chr1_4:42151167-42151186 | None:intergenic | 45.0% | |
| GTTAGCTGTGCTTGTAACCA+TGG | - | chr1_4:42151532-42151551 | Msa0163810:intron | 45.0% | |
| !! | AGGCTTGTTGCCTTCAACTT+AGG | - | chr1_4:42151675-42151694 | Msa0163810:intron | 45.0% |
| AACTTAGGTTATCTTCCGGG+AGG | - | chr1_4:42151690-42151709 | Msa0163810:intron | 45.0% | |
| ACTATGCTAATAAGCCCTCC+TGG | + | chr1_4:42151786-42151805 | None:intergenic | 45.0% | |
| AGGAGGGCTTATTAGCATAG+TGG | - | chr1_4:42151785-42151804 | Msa0163810:intron | 45.0% | |
| ATGCATAAGCACTAGCGAGA+TGG | + | chr1_4:42152508-42152527 | None:intergenic | 45.0% | |
| AAATCTGTCCAGGGAAGAGT+TGG | - | chr1_4:42152915-42152934 | Msa0163810:intron | 45.0% | |
| !!! | TTATTATTATTTTGTTTAAT+GGG | + | chr1_4:42148303-42148322 | None:intergenic | 5.0% |
| !!! | TTATAAATATGTTTTAAAAA+AGG | - | chr1_4:42150165-42150184 | Msa0163810:intron | 5.0% |
| !!! | TATAAATATGTTTTAAAAAA+GGG | - | chr1_4:42150166-42150185 | Msa0163810:intron | 5.0% |
| ! | CTGGAGATGTTGGTTGGAGA+AGG | + | chr1_4:42148255-42148274 | None:intergenic | 50.0% |
| ! | CGTCTGAAGCATGACTCGTA+TGG | + | chr1_4:42148915-42148934 | None:intergenic | 50.0% |
| AATAGCTAGCTCAAGTGGCG+AGG | + | chr1_4:42149000-42149019 | None:intergenic | 50.0% | |
| TCGCCACTTGAGCTAGCTAT+TGG | - | chr1_4:42148999-42149018 | Msa0163810:intron | 50.0% | |
| CGCCACTTGAGCTAGCTATT+GGG | - | chr1_4:42149000-42149019 | Msa0163810:intron | 50.0% | |
| GCCACTTGAGCTAGCTATTG+GGG | - | chr1_4:42149001-42149020 | Msa0163810:intron | 50.0% | |
| ACCCCAATAGCTAGCTCAAG+TGG | + | chr1_4:42149005-42149024 | None:intergenic | 50.0% | |
| ! | CATTCTATATGCAGGTGCCG+GGG | + | chr1_4:42149382-42149401 | None:intergenic | 50.0% |
| CGCTTAGTTCCAATGAGGTG+AGG | - | chr1_4:42150033-42150052 | Msa0163810:intron | 50.0% | |
| CTCAGTAGTCCTCACCTCAT+TGG | + | chr1_4:42150045-42150064 | None:intergenic | 50.0% | |
| CAATGAGGTGAGGACTACTG+AGG | - | chr1_4:42150043-42150062 | Msa0163810:intron | 50.0% | |
| TGAGGACTACTGAGGAGTGA+AGG | - | chr1_4:42150051-42150070 | Msa0163810:intron | 50.0% | |
| GACTTGAACCCGTGACCTTT+CGG | - | chr1_4:42150299-42150318 | Msa0163810:intron | 50.0% | |
| TCATGTGACCGAAAGGTCAC+GGG | + | chr1_4:42150310-42150329 | None:intergenic | 50.0% | |
| GTCATGTGACCGAAAGGTCA+CGG | + | chr1_4:42150311-42150330 | None:intergenic | 50.0% | |
| ! | CATGAATGGTCGGGCTTTAG+AGG | - | chr1_4:42151016-42151035 | Msa0163810:intron | 50.0% |
| GCTTGACATACCGCTCCAAA+TGG | + | chr1_4:42151084-42151103 | None:intergenic | 50.0% | |
| TGGAGCGGTATGTCAAGCAA+TGG | - | chr1_4:42151086-42151105 | Msa0163810:intron | 50.0% | |
| !! | GGGGCTGTTTTGCTATGTGA+AGG | + | chr1_4:42152150-42152169 | None:intergenic | 50.0% |
| AACAACCTCCAACTCTTCCC+TGG | + | chr1_4:42152926-42152945 | None:intergenic | 50.0% | |
| GAAATCCGGGGTTTGAACCC+CGG | - | chr1_4:42149362-42149381 | Msa0163810:intron | 55.0% | |
| ACTGAAGCTCCCGCATATGC+AGG | - | chr1_4:42150200-42150219 | Msa0163810:intron | 55.0% | |
| CTGAAGCTCCCGCATATGCA+GGG | - | chr1_4:42150201-42150220 | Msa0163810:intron | 55.0% | |
| TTCCCGAACCCTGCATATGC+GGG | + | chr1_4:42150212-42150231 | None:intergenic | 55.0% | |
| CTTCCCGAACCCTGCATATG+CGG | + | chr1_4:42150213-42150232 | None:intergenic | 55.0% | |
| GCATATGCAGGGTTCGGGAA+GGG | - | chr1_4:42150212-42150231 | Msa0163810:intron | 55.0% | |
| CATATGCAGGGTTCGGGAAG+GGG | - | chr1_4:42150213-42150232 | Msa0163810:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr1_4:42150298-42150317 | None:intergenic | 55.0% | |
| AGGGGTAACCTTGGCACAAC+TGG | + | chr1_4:42150344-42150363 | None:intergenic | 55.0% | |
| ! | ACAACGGCTTGTCCGGTTTG+CGG | + | chr1_4:42150466-42150485 | None:intergenic | 55.0% |
| TCTGTCCAGGGAAGAGTTGG+AGG | - | chr1_4:42152918-42152937 | Msa0163810:intron | 55.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | + | chr1_4:42150196-42150215 | None:intergenic | 60.0% | |
| GCTCCCGCATATGCAGGGTT+CGG | - | chr1_4:42150206-42150225 | Msa0163810:intron | 60.0% | |
| CTCCCGCATATGCAGGGTTC+GGG | - | chr1_4:42150207-42150226 | Msa0163810:intron | 60.0% | |
| CGCATATGCAGGGTTCGGGA+AGG | - | chr1_4:42150211-42150230 | Msa0163810:intron | 60.0% | |
| GTGGTTTATGTCGGGCACCC+TGG | - | chr1_4:42151804-42151823 | Msa0163810:intron | 60.0% | |
| GTTTATGTCGGGCACCCTGG+TGG | - | chr1_4:42151807-42151826 | Msa0163810:intron | 60.0% | |
| !! | AGGTGCCGGGGTTCAAACCC+CGG | + | chr1_4:42149370-42149389 | None:intergenic | 65.0% |
| TGCGGGAGCTTCAGTGCACC+GGG | + | chr1_4:42150195-42150214 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr1_4:42150226-42150245 | Msa0163810:intron | 65.0% | |
| ATGTCGGGCACCCTGGTGGA+CGG | - | chr1_4:42151811-42151830 | Msa0163810:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 42148128 | 42153196 | 42148128 | ID=Msa0163810;Name=Msa0163810 |
| chr1_4 | mRNA | 42148128 | 42153196 | 42148128 | ID=Msa0163810-mRNA-1;Parent=Msa0163810;Name=Msa0163810-mRNA-1;_AED=0.12;_eAED=0.12;_QI=46|1|1|1|1|1|6|146|266 |
| chr1_4 | exon | 42148128 | 42148397 | 42148128 | ID=Msa0163810-mRNA-1:exon:12241;Parent=Msa0163810-mRNA-1 |
| chr1_4 | exon | 42149492 | 42149647 | 42149492 | ID=Msa0163810-mRNA-1:exon:12240;Parent=Msa0163810-mRNA-1 |
| chr1_4 | exon | 42150553 | 42150626 | 42150553 | ID=Msa0163810-mRNA-1:exon:12239;Parent=Msa0163810-mRNA-1 |
| chr1_4 | exon | 42151275 | 42151467 | 42151275 | ID=Msa0163810-mRNA-1:exon:12238;Parent=Msa0163810-mRNA-1 |
| chr1_4 | exon | 42152830 | 42152893 | 42152830 | ID=Msa0163810-mRNA-1:exon:12237;Parent=Msa0163810-mRNA-1 |
| chr1_4 | exon | 42152961 | 42153196 | 42152961 | ID=Msa0163810-mRNA-1:exon:12236;Parent=Msa0163810-mRNA-1 |
| chr1_4 | five_prime_UTR | 42153151 | 42153196 | 42153151 | ID=Msa0163810-mRNA-1:five_prime_utr;Parent=Msa0163810-mRNA-1 |
| chr1_4 | CDS | 42152961 | 42153150 | 42152961 | ID=Msa0163810-mRNA-1:cds;Parent=Msa0163810-mRNA-1 |
| chr1_4 | CDS | 42152830 | 42152893 | 42152830 | ID=Msa0163810-mRNA-1:cds;Parent=Msa0163810-mRNA-1 |
| chr1_4 | CDS | 42151275 | 42151467 | 42151275 | ID=Msa0163810-mRNA-1:cds;Parent=Msa0163810-mRNA-1 |
| chr1_4 | CDS | 42150553 | 42150626 | 42150553 | ID=Msa0163810-mRNA-1:cds;Parent=Msa0163810-mRNA-1 |
| chr1_4 | CDS | 42149492 | 42149647 | 42149492 | ID=Msa0163810-mRNA-1:cds;Parent=Msa0163810-mRNA-1 |
| chr1_4 | CDS | 42148274 | 42148397 | 42148274 | ID=Msa0163810-mRNA-1:cds;Parent=Msa0163810-mRNA-1 |
| chr1_4 | three_prime_UTR | 42148128 | 42148273 | 42148128 | ID=Msa0163810-mRNA-1:three_prime_utr;Parent=Msa0163810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
