AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1140010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1140010 MtrunA17_Chr7g0221181 92.411 224 16 1 1 224 1 223 2.98e-155 429
Msa1140010 MtrunA17_Chr5g0397281 31.724 145 99 0 78 222 82 226 1.30e-27 106
Msa1140010 MtrunA17_Chr3g0126191 26.570 207 140 3 15 221 34 228 3.31e-24 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1140010 AT1G71480.1 54.464 224 85 4 9 224 2 216 7.92e-81 241
Msa1140010 AT1G71480.3 72.477 109 30 0 78 186 70 178 1.16e-55 176
Msa1140010 AT1G71480.2 67.073 82 27 0 78 159 70 151 5.52e-35 122
Msa1140010 AT5G41470.1 37.241 145 91 0 78 222 74 218 1.32e-34 124

Find 61 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAAGCTCTACATTATTT+TGG 0.131860 7_4:+11201199 Msa1140010:exon
ACAACCTTAGTAACTGAATT+TGG 0.196315 7_4:-11197900 None:intergenic
GAAGAAGAAGAGACAGAAAA+TGG 0.272859 7_4:+11197931 Msa1140010:CDS
GCATCCCCTGGCTTGATTGC+AGG 0.284009 7_4:-11200916 None:intergenic
GTCTTTCCCCGTCCCTTTGT+AGG 0.301901 7_4:+11198137 Msa1140010:CDS
AGTGGAGCATAAAATGTTTA+TGG 0.309641 7_4:+11197791 Msa1140010:exon
AAAACTGCATCCTTTGCTAT+AGG 0.316878 7_4:-11199210 None:intergenic
GTTACTAAGGTTGTTGGAAT+TGG 0.326378 7_4:+11197909 Msa1140010:CDS
AAGTTATATGATTAAGTTAT+GGG 0.335937 7_4:+11201399 Msa1140010:three_prime_UTR
AAACTGCATCCTTTGCTATA+GGG 0.357585 7_4:-11199209 None:intergenic
GTTGGAGTGACCTGGCATTT+AGG 0.360279 7_4:+11198398 Msa1140010:CDS
ATGTTGATTTGATTCTAGTT+TGG 0.373655 7_4:+11201260 Msa1140010:three_prime_UTR
AACAAACTGCAGATCCTTGC+TGG 0.380904 7_4:-11198342 None:intergenic
TGTTATTGATGATTTGTCTA+TGG 0.388290 7_4:+11198361 Msa1140010:CDS
GAAGTTATATGATTAAGTTA+TGG 0.397580 7_4:+11201398 Msa1140010:three_prime_UTR
AATTCAGTTACTAAGGTTGT+TGG 0.412689 7_4:+11197903 Msa1140010:CDS
TATATATTTATATTCAGAAA+AGG 0.434945 7_4:+11201331 Msa1140010:three_prime_UTR
TACTCCAAATTCAGTTACTA+AGG 0.438911 7_4:+11197896 Msa1140010:CDS
CAAGCCAGGGGATGCAACTT+TGG 0.445702 7_4:+11200924 Msa1140010:CDS
TATCGTTTGGAAGTGATCAA+TGG 0.466251 7_4:+11199233 Msa1140010:CDS
TTGAAGAGTCTATGTGGTGC+TGG 0.469794 7_4:+11197764 Msa1140010:five_prime_UTR
CTCTGAAAATTGTGTGTATG+AGG 0.478927 7_4:+11198109 Msa1140010:CDS
TATGTGACAAAGAAGTCAAA+GGG 0.489975 7_4:-11197863 None:intergenic
CTATGTGGTGCTGGGTGAAG+TGG 0.497004 7_4:+11197773 Msa1140010:five_prime_UTR
CATCCTTTGCTATAGGGAAA+GGG 0.498656 7_4:-11199203 None:intergenic
GTTGAACCTGCAATCAAGCC+AGG 0.510194 7_4:+11200910 Msa1140010:CDS
GCATCCTTTGCTATAGGGAA+AGG 0.517130 7_4:-11199204 None:intergenic
CCGTCCCTTTGTAGGTCGTA+AGG 0.521711 7_4:+11198145 Msa1140010:CDS
TCAACATACTACTAGTGTAA+AGG 0.527209 7_4:-11201244 None:intergenic
TCTTCAACGATTTCCTCAGT+TGG 0.530591 7_4:+11201163 Msa1140010:CDS
CATACCAAAGTTGCATCCCC+TGG 0.535620 7_4:-11200928 None:intergenic
AGTGGTGAGAAATTTCTATG+AGG 0.536419 7_4:+11198046 Msa1140010:CDS
TTGTAATGCACCTAAATGCC+AGG 0.543656 7_4:-11198408 None:intergenic
CTATGTGACAAAGAAGTCAA+AGG 0.545383 7_4:-11197864 None:intergenic
CATCATCTGTTGGAGTGACC+TGG 0.548677 7_4:+11198390 Msa1140010:CDS
GTGGTGAGAAATTTCTATGA+GGG 0.551876 7_4:+11198047 Msa1140010:CDS
CTTACGACCTACAAAGGGAC+GGG 0.552514 7_4:-11198144 None:intergenic
AGTTACCTTACGACCTACAA+AGG 0.560625 7_4:-11198150 None:intergenic
ATGGAGGACACATCATCTGT+TGG 0.564136 7_4:+11198380 Msa1140010:CDS
TCTGATAAACAGATATGGAC+GGG 0.577054 7_4:+11200882 Msa1140010:intron
GTTACCTTACGACCTACAAA+GGG 0.584739 7_4:-11198149 None:intergenic
TTGAACCTGCAATCAAGCCA+GGG 0.605419 7_4:+11200911 Msa1140010:CDS
TTCTGATAAACAGATATGGA+CGG 0.605638 7_4:+11200881 Msa1140010:intron
TGTAGATTCAGCTTCAACAG+TGG 0.614055 7_4:+11198028 Msa1140010:CDS
AAGCCCTTTCCCTATAGCAA+AGG 0.615944 7_4:+11199200 Msa1140010:CDS
TTAAGTTTGAAGAGTCTATG+TGG 0.616116 7_4:+11197758 Msa1140010:five_prime_UTR
GGGAATCAATGCACATGATG+TGG 0.616754 7_4:+11198067 Msa1140010:CDS
TGAAGAGTCTATGTGGTGCT+GGG 0.620856 7_4:+11197765 Msa1140010:five_prime_UTR
TATTGATGATTTGTCTATGG+AGG 0.624532 7_4:+11198364 Msa1140010:CDS
CAAAGGGACGGGGAAAGACA+AGG 0.637134 7_4:-11198133 None:intergenic
CAGTGATAAAGAGTGTGACA+TGG 0.641209 7_4:+11201138 Msa1140010:CDS
AAGAGACAGAAAATGGAATG+TGG 0.641597 7_4:+11197938 Msa1140010:CDS
TTTGTGAATGCAGAATGGAA+AGG 0.641736 7_4:+11199176 Msa1140010:intron
CCTTACGACCTACAAAGGGA+CGG 0.643834 7_4:-11198145 None:intergenic
GTTGTTATCATCAAAGTGTG+TGG 0.656507 7_4:-11198003 None:intergenic
TATAATCGGTCTGCCAACTG+AGG 0.665914 7_4:-11201176 None:intergenic
GTTCACTGAGTCTACCAGCA+AGG 0.668841 7_4:+11198328 Msa1140010:CDS
TTACGACCTACAAAGGGACG+GGG 0.679138 7_4:-11198143 None:intergenic
TGAACCTGCAATCAAGCCAG+GGG 0.698730 7_4:+11200912 Msa1140010:CDS
ATGTGACAAAGAAGTCAAAG+GGG 0.705440 7_4:-11197862 None:intergenic
AATGTGGCAGTTAATAACAG+TGG 0.787112 7_4:+11197954 Msa1140010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAATTAAAATAAATTTA+TGG - chr7_4:11198187-11198206 None:intergenic 0.0%
!! TAATAATTAAGACATAAATT+TGG - chr7_4:11198271-11198290 None:intergenic 10.0%
!! TATATATTTATATTCAGAAA+AGG + chr7_4:11201331-11201350 Msa1140010:three_prime_UTR 10.0%
!! AATTAAATAATTAAGTATGG+TGG + chr7_4:11198199-11198218 Msa1140010:intron 15.0%
!! ACTTAGAAGTTTATAAAAAT+TGG + chr7_4:11198226-11198245 Msa1140010:intron 15.0%
!!! TATAAAAATTGGTTTTTTAC+AGG + chr7_4:11198237-11198256 Msa1140010:intron 15.0%
!!! AATTATTAGTACTATTTTAC+AGG + chr7_4:11198283-11198302 Msa1140010:intron 15.0%
!! AAAAACTTACTACTAAATAA+GGG - chr7_4:11198716-11198735 None:intergenic 15.0%
!!! TATTGACATTTTTATTTTTG+AGG + chr7_4:11199046-11199065 Msa1140010:intron 15.0%
!!! ATTGACATTTTTATTTTTGA+GGG + chr7_4:11199047-11199066 Msa1140010:intron 15.0%
!! ATCTATTTAAATCTAAGTAT+GGG + chr7_4:11199565-11199584 Msa1140010:intron 15.0%
!! AAGTTATATGATTAAGTTAT+GGG + chr7_4:11201399-11201418 Msa1140010:three_prime_UTR 15.0%
!! AAAACTTACTACTAAATAAG+GGG - chr7_4:11198715-11198734 None:intergenic 20.0%
!! CAAAAACTTACTACTAAATA+AGG - chr7_4:11198717-11198736 None:intergenic 20.0%
!!! CTTATTTAGTAGTAAGTTTT+TGG + chr7_4:11198715-11198734 Msa1140010:intron 20.0%
!!! TTGACATTTTTATTTTTGAG+GGG + chr7_4:11199048-11199067 Msa1140010:intron 20.0%
!! GATCTATTTAAATCTAAGTA+TGG + chr7_4:11199564-11199583 Msa1140010:intron 20.0%
!! GGAAGACTATAAAAATTATT+TGG + chr7_4:11199820-11199839 Msa1140010:intron 20.0%
!!! GTATTTATTCTATTTCTCAA+TGG + chr7_4:11200284-11200303 Msa1140010:intron 20.0%
!!! ATATTTCTGATAAACAGATA+TGG + chr7_4:11200877-11200896 Msa1140010:intron 20.0%
!! GAAGTTATATGATTAAGTTA+TGG + chr7_4:11201398-11201417 Msa1140010:three_prime_UTR 20.0%
!! TGTTATTGATGATTTGTCTA+TGG + chr7_4:11198361-11198380 Msa1140010:CDS 25.0%
!! TCAATATGATGAGTTTTCAT+TGG - chr7_4:11199032-11199051 None:intergenic 25.0%
!! TTTACTTTGTAACCACATTT+TGG + chr7_4:11199095-11199114 Msa1140010:intron 25.0%
!!! AAAGTATTGGATTCTTTTTG+AGG + chr7_4:11199128-11199147 Msa1140010:intron 25.0%
! TGATGATTATATTCTTGTAG+AGG + chr7_4:11199511-11199530 Msa1140010:intron 25.0%
! CTTGGAAAACTATACAAAAT+CGG + chr7_4:11199872-11199891 Msa1140010:intron 25.0%
!! AATTTCTAAGCATTTGAGTT+GGG + chr7_4:11200662-11200681 Msa1140010:intron 25.0%
!! AAGAAACTTCAAGTTAAACT+GGG - chr7_4:11200706-11200725 None:intergenic 25.0%
!! AAAGAAACTTCAAGTTAAAC+TGG - chr7_4:11200707-11200726 None:intergenic 25.0%
!!! ATGTTGATTTGATTCTAGTT+TGG + chr7_4:11201260-11201279 Msa1140010:three_prime_UTR 25.0%
TTAAGTTTGAAGAGTCTATG+TGG + chr7_4:11197758-11197777 Msa1140010:five_prime_UTR 30.0%
AGTGGAGCATAAAATGTTTA+TGG + chr7_4:11197791-11197810 Msa1140010:exon 30.0%
TATGTGACAAAGAAGTCAAA+GGG - chr7_4:11197866-11197885 None:intergenic 30.0%
TACTCCAAATTCAGTTACTA+AGG + chr7_4:11197896-11197915 Msa1140010:CDS 30.0%
ACAACCTTAGTAACTGAATT+TGG - chr7_4:11197903-11197922 None:intergenic 30.0%
AATTCAGTTACTAAGGTTGT+TGG + chr7_4:11197903-11197922 Msa1140010:CDS 30.0%
! TATTGATGATTTGTCTATGG+AGG + chr7_4:11198364-11198383 Msa1140010:CDS 30.0%
GTAAGTCCAATATGTATAGA+TGG - chr7_4:11199003-11199022 None:intergenic 30.0%
TTGCAATCATTTCCAAAATG+TGG - chr7_4:11199110-11199129 None:intergenic 30.0%
TGGAAATGATTGCAAAGTAT+TGG + chr7_4:11199115-11199134 Msa1140010:intron 30.0%
ATTTGTTTGTGAATGCAGAA+TGG + chr7_4:11199171-11199190 Msa1140010:intron 30.0%
! ATTGGAGATATACGCTATTT+TGG + chr7_4:11199720-11199739 Msa1140010:intron 30.0%
ATCAAACCTTCAATAACAAG+TGG - chr7_4:11199990-11200009 None:intergenic 30.0%
TTTGATCCGAAATAGCAAAA+TGG + chr7_4:11200021-11200040 Msa1140010:intron 30.0%
! GTCACTTGTTTAAATTTTCC+AGG + chr7_4:11200081-11200100 Msa1140010:intron 30.0%
! ACTTGTTTAAATTTTCCAGG+TGG + chr7_4:11200084-11200103 Msa1140010:intron 30.0%
AGCTAAAATTTGTAACAGTG+TGG + chr7_4:11200129-11200148 Msa1140010:intron 30.0%
!! AAGTGGATTTTTCATGACAA+AGG + chr7_4:11200187-11200206 Msa1140010:intron 30.0%
TTCTGTATGCGTTAATTCAA+TGG + chr7_4:11200473-11200492 Msa1140010:intron 30.0%
! CTGTACTGTTTTATCAGTTA+AGG + chr7_4:11200499-11200518 Msa1140010:intron 30.0%
!! GATTTTGGCAGAATAGTTTA+TGG + chr7_4:11200527-11200546 Msa1140010:intron 30.0%
! ATGTGTGTTTCTTTGCTATA+TGG + chr7_4:11200631-11200650 Msa1140010:intron 30.0%
CAATTTCTAAGCATTTGAGT+TGG + chr7_4:11200661-11200680 Msa1140010:intron 30.0%
AGTTTCTTTACTCAGTTTAG+TGG + chr7_4:11200718-11200737 Msa1140010:intron 30.0%
TAATGTTCTTGTTCACATTC+AGG + chr7_4:11200756-11200775 Msa1140010:intron 30.0%
TTCTGATAAACAGATATGGA+CGG + chr7_4:11200881-11200900 Msa1140010:intron 30.0%
TACTATCGATATTTCTTCCT+CGG + chr7_4:11201043-11201062 Msa1140010:intron 30.0%
TTTGGAAACAATTAACATGC+AGG + chr7_4:11201115-11201134 Msa1140010:intron 30.0%
!! TGTAGAGCTTTTGCTATAAT+CGG - chr7_4:11201193-11201212 None:intergenic 30.0%
! GCAAAAGCTCTACATTATTT+TGG + chr7_4:11201199-11201218 Msa1140010:exon 30.0%
!!! AGCTCTACATTATTTTGGAA+AGG + chr7_4:11201204-11201223 Msa1140010:three_prime_UTR 30.0%
!!! GCTCTACATTATTTTGGAAA+GGG + chr7_4:11201205-11201224 Msa1140010:three_prime_UTR 30.0%
TCAACATACTACTAGTGTAA+AGG - chr7_4:11201247-11201266 None:intergenic 30.0%
ATGTGACAAAGAAGTCAAAG+GGG - chr7_4:11197865-11197884 None:intergenic 35.0%
CTATGTGACAAAGAAGTCAA+AGG - chr7_4:11197867-11197886 None:intergenic 35.0%
GTTACTAAGGTTGTTGGAAT+TGG + chr7_4:11197909-11197928 Msa1140010:CDS 35.0%
GAAGAAGAAGAGACAGAAAA+TGG + chr7_4:11197931-11197950 Msa1140010:CDS 35.0%
AAGAGACAGAAAATGGAATG+TGG + chr7_4:11197938-11197957 Msa1140010:CDS 35.0%
AATGTGGCAGTTAATAACAG+TGG + chr7_4:11197954-11197973 Msa1140010:CDS 35.0%
GTTGTTATCATCAAAGTGTG+TGG - chr7_4:11198006-11198025 None:intergenic 35.0%
AGTGGTGAGAAATTTCTATG+AGG + chr7_4:11198046-11198065 Msa1140010:CDS 35.0%
GTGGTGAGAAATTTCTATGA+GGG + chr7_4:11198047-11198066 Msa1140010:CDS 35.0%
! CTCTGAAAATTGTGTGTATG+AGG + chr7_4:11198109-11198128 Msa1140010:CDS 35.0%
TCAACTTTGTGTTTCAATGC+AGG - chr7_4:11198567-11198586 None:intergenic 35.0%
AAGTACTTTCTTCACTGCTT+TGG - chr7_4:11198624-11198643 None:intergenic 35.0%
! ACTTAGAAAGTGTGAAAAGC+AGG + chr7_4:11198669-11198688 Msa1140010:intron 35.0%
! CTTAGAAAGTGTGAAAAGCA+GGG + chr7_4:11198670-11198689 Msa1140010:intron 35.0%
AAAAGCAGGGTTTAAGTACT+CGG + chr7_4:11198683-11198702 Msa1140010:intron 35.0%
AGAACAATCAGTCAGTAGAT+TGG - chr7_4:11198761-11198780 None:intergenic 35.0%
AGTCCAATATGTATAGATGG+AGG - chr7_4:11199000-11199019 None:intergenic 35.0%
TTTGTGAATGCAGAATGGAA+AGG + chr7_4:11199176-11199195 Msa1140010:intron 35.0%
! AAACTGCATCCTTTGCTATA+GGG - chr7_4:11199212-11199231 None:intergenic 35.0%
! AAAACTGCATCCTTTGCTAT+AGG - chr7_4:11199213-11199232 None:intergenic 35.0%
! AGGATGCAGTTTTTATCGTT+TGG + chr7_4:11199220-11199239 Msa1140010:CDS 35.0%
TATCGTTTGGAAGTGATCAA+TGG + chr7_4:11199233-11199252 Msa1140010:CDS 35.0%
GGCTAAAAACTGAGAAAAGT+AGG + chr7_4:11199532-11199551 Msa1140010:intron 35.0%
AAACTGAGAAAAGTAGGTTG+TGG + chr7_4:11199538-11199557 Msa1140010:intron 35.0%
AAGATAGAGAGGTTAGAGAA+GGG + chr7_4:11199641-11199660 Msa1140010:intron 35.0%
AAGATCAGTGTGTTTAGTCT+TGG + chr7_4:11199694-11199713 Msa1140010:intron 35.0%
!! TGTGTTTAGTCTTGGATGAT+TGG + chr7_4:11199702-11199721 Msa1140010:intron 35.0%
TAGACTGTTTCCGTTATCTA+TGG + chr7_4:11199787-11199806 Msa1140010:intron 35.0%
ACTTTGACGTCCATAGATAA+CGG - chr7_4:11199800-11199819 None:intergenic 35.0%
CAATTATTCCACGCTTAACA+AGG - chr7_4:11199915-11199934 None:intergenic 35.0%
CTTGTTAAGCGTGGAATAAT+TGG + chr7_4:11199913-11199932 Msa1140010:intron 35.0%
ATCCGAAATAGCAAAATGGT+TGG + chr7_4:11200025-11200044 Msa1140010:intron 35.0%
TCCGAAATAGCAAAATGGTT+GGG + chr7_4:11200026-11200045 Msa1140010:intron 35.0%
!!! ACCCAACCATTTTGCTATTT+CGG - chr7_4:11200030-11200049 None:intergenic 35.0%
AATAGCAAAATGGTTGGGTT+TGG + chr7_4:11200031-11200050 Msa1140010:intron 35.0%
!! AAATTTTCCAGGTGGATTCA+AGG + chr7_4:11200092-11200111 Msa1140010:intron 35.0%
TCTCAATGGTTCACTTGTTT+AGG + chr7_4:11200298-11200317 Msa1140010:intron 35.0%
! ATGGTTCACTTGTTTAGGTT+TGG + chr7_4:11200303-11200322 Msa1140010:intron 35.0%
!! TGTTTAGGTTTGGTGTGTAA+TGG + chr7_4:11200313-11200332 Msa1140010:intron 35.0%
! TCAGTTAAGGTTGCAGATTT+TGG + chr7_4:11200512-11200531 Msa1140010:intron 35.0%
AAGAAACACATTCAAGCACA+AGG - chr7_4:11200786-11200805 None:intergenic 35.0%
TCTGATAAACAGATATGGAC+GGG + chr7_4:11200882-11200901 Msa1140010:intron 35.0%
ACTCAATAGCATCACTGATA+AGG - chr7_4:11200963-11200982 None:intergenic 35.0%
TTAGAAGACACTAAAATCCG+AGG - chr7_4:11201063-11201082 None:intergenic 35.0%
! AGCTATCAGTCTGATCTTTT+TGG + chr7_4:11201097-11201116 Msa1140010:intron 35.0%
TGTAGATTCAGCTTCAACAG+TGG + chr7_4:11198028-11198047 Msa1140010:CDS 40.0%
GTTACCTTACGACCTACAAA+GGG - chr7_4:11198152-11198171 None:intergenic 40.0%
AGTTACCTTACGACCTACAA+AGG - chr7_4:11198153-11198172 None:intergenic 40.0%
TTGTAATGCACCTAAATGCC+AGG - chr7_4:11198411-11198430 None:intergenic 40.0%
TACTTTCTTCACTGCTTTGG+AGG - chr7_4:11198621-11198640 None:intergenic 40.0%
!! ATCTGATGGGGCCATTTTAT+TGG + chr7_4:11198968-11198987 Msa1140010:intron 40.0%
!! TCTGATGGGGCCATTTTATT+GGG + chr7_4:11198969-11198988 Msa1140010:intron 40.0%
TGGCCTCCATCTATACATAT+TGG + chr7_4:11198994-11199013 Msa1140010:intron 40.0%
! CATCCTTTGCTATAGGGAAA+GGG - chr7_4:11199206-11199225 None:intergenic 40.0%
TTAACATGACGAGAGTAGCA+TGG + chr7_4:11199303-11199322 Msa1140010:intron 40.0%
!! TTTGCTCTGAAACTTGTGCT+TGG + chr7_4:11199340-11199359 Msa1140010:intron 40.0%
ATCTAAGTATGGGCATGTTG+AGG + chr7_4:11199575-11199594 Msa1140010:intron 40.0%
TCTAAGTATGGGCATGTTGA+GGG + chr7_4:11199576-11199595 Msa1140010:intron 40.0%
ATGTTGAGGGTTAAATCGGA+AGG + chr7_4:11199589-11199608 Msa1140010:intron 40.0%
TGTTGAGGGTTAAATCGGAA+GGG + chr7_4:11199590-11199609 Msa1140010:intron 40.0%
GAAGATAGAGAGGTTAGAGA+AGG + chr7_4:11199640-11199659 Msa1140010:intron 40.0%
GTTATCTATGGACGTCAAAG+TGG + chr7_4:11199799-11199818 Msa1140010:intron 40.0%
GCATGTGATCAGTCATTTGA+AGG + chr7_4:11199842-11199861 Msa1140010:intron 40.0%
!! TCATTTGAAGGTGTTTCGCT+TGG + chr7_4:11199854-11199873 Msa1140010:intron 40.0%
ACAAAATCGGTTACCAGCAA+AGG + chr7_4:11199885-11199904 Msa1140010:intron 40.0%
TTAACAAGGTTGTCCTTTGC+TGG - chr7_4:11199901-11199920 None:intergenic 40.0%
TAAGCGTGGAATAATTGGAG+AGG + chr7_4:11199918-11199937 Msa1140010:intron 40.0%
ACACTCATTTGTGTAGTGCA+GGG + chr7_4:11199941-11199960 Msa1140010:intron 40.0%
!! TGTGAGCCACTTGTTATTGA+AGG + chr7_4:11199981-11200000 Msa1140010:intron 40.0%
CAAAATGGTTGGGTTTGGAA+GGG + chr7_4:11200036-11200055 Msa1140010:intron 40.0%
AAAATGGTTGGGTTTGGAAG+GGG + chr7_4:11200037-11200056 Msa1140010:intron 40.0%
! TTGATTCCTAGCTCTCCAAA+CGG - chr7_4:11200169-11200188 None:intergenic 40.0%
! AACAGTCTAAAATGCTGCCA+TGG + chr7_4:11200233-11200252 Msa1140010:intron 40.0%
CTAAAATGCTGCCATGGAAT+TGG + chr7_4:11200239-11200258 Msa1140010:intron 40.0%
!! TTAGCTTGCAACCAATTCCA+TGG - chr7_4:11200253-11200272 None:intergenic 40.0%
CATATATACCTAGAGACGCA+GGG - chr7_4:11200369-11200388 None:intergenic 40.0%
ACAGAGGGAAAATTGCTTGA+AGG - chr7_4:11200570-11200589 None:intergenic 40.0%
AGGACACTCAAAACAACAGA+GGG - chr7_4:11200585-11200604 None:intergenic 40.0%
!! TGTTTTGAGTGTCCTGGTAT+TGG + chr7_4:11200590-11200609 Msa1140010:intron 40.0%
! GTGTTTCTTTGCTATATGGC+AGG + chr7_4:11200635-11200654 Msa1140010:intron 40.0%
! CAGTGATAAAGAGTGTGACA+TGG + chr7_4:11201138-11201157 Msa1140010:CDS 40.0%
TCTTCAACGATTTCCTCAGT+TGG + chr7_4:11201163-11201182 Msa1140010:CDS 40.0%
! CACTTTCACATTTTCTGCGT+TGG - chr7_4:11201308-11201327 None:intergenic 40.0%
TTGAAGAGTCTATGTGGTGC+TGG + chr7_4:11197764-11197783 Msa1140010:five_prime_UTR 45.0%
TGAAGAGTCTATGTGGTGCT+GGG + chr7_4:11197765-11197784 Msa1140010:five_prime_UTR 45.0%
GGGAATCAATGCACATGATG+TGG + chr7_4:11198067-11198086 Msa1140010:CDS 45.0%
AACAAACTGCAGATCCTTGC+TGG - chr7_4:11198345-11198364 None:intergenic 45.0%
ATGGAGGACACATCATCTGT+TGG + chr7_4:11198380-11198399 Msa1140010:CDS 45.0%
! ACAAAGTTGATCTCCTGAGC+TGG + chr7_4:11198577-11198596 Msa1140010:intron 45.0%
GATTGGAGCGTATCACAACT+CGG - chr7_4:11198744-11198763 None:intergenic 45.0%
GCTTGGCTATTGCTCTTATC+TGG + chr7_4:11198862-11198881 Msa1140010:intron 45.0%
AAGCCCTTTCCCTATAGCAA+AGG + chr7_4:11199200-11199219 Msa1140010:CDS 45.0%
! GCATCCTTTGCTATAGGGAA+AGG - chr7_4:11199207-11199226 None:intergenic 45.0%
GGGCATGTTGAGGGTTAAAT+CGG + chr7_4:11199585-11199604 Msa1140010:intron 45.0%
AGGGTTAAATCGGAAGGGTT+GGG + chr7_4:11199595-11199614 Msa1140010:intron 45.0%
CTCTCTATCTTCTTCCACCA+CGG - chr7_4:11199632-11199651 None:intergenic 45.0%
!! AGGTTAGAGAAGGGTGTTGA+GGG + chr7_4:11199650-11199669 Msa1140010:intron 45.0%
!!! CGCTATTTTGGTCGAAACTG+TGG + chr7_4:11199732-11199751 Msa1140010:intron 45.0%
AAGGACAACCTTGTTAAGCG+TGG + chr7_4:11199904-11199923 Msa1140010:intron 45.0%
GACACTCATTTGTGTAGTGC+AGG + chr7_4:11199940-11199959 Msa1140010:intron 45.0%
GCAAAATGGTTGGGTTTGGA+AGG + chr7_4:11200035-11200054 Msa1140010:intron 45.0%
!! TTTTCCAGGTGGATTCAAGG+AGG + chr7_4:11200095-11200114 Msa1140010:intron 45.0%
GTTAGCGTATTCAGTCCGTT+TGG + chr7_4:11200151-11200170 Msa1140010:intron 45.0%
TTGGAGAGCTAGGAATCAAG+TGG + chr7_4:11200170-11200189 Msa1140010:intron 45.0%
!! TAGGTTTGGTGTGTAATGGC+CGG + chr7_4:11200317-11200336 Msa1140010:intron 45.0%
AGACGCAGGGAAAAAAACAG+TGG - chr7_4:11200356-11200375 None:intergenic 45.0%
!!! GTTTTTTTCCCTGCGTCTCT+AGG + chr7_4:11200358-11200377 Msa1140010:intron 45.0%
CCATATATACCTAGAGACGC+AGG - chr7_4:11200370-11200389 None:intergenic 45.0%
CCTGCGTCTCTAGGTATATA+TGG + chr7_4:11200367-11200386 Msa1140010:intron 45.0%
GCGTCTCTAGGTATATATGG+TGG + chr7_4:11200370-11200389 Msa1140010:intron 45.0%
! GTTTAAGACGCTTCTGTGCA+AGG + chr7_4:11200442-11200461 Msa1140010:intron 45.0%
CAGGACACTCAAAACAACAG+AGG - chr7_4:11200586-11200605 None:intergenic 45.0%
!!! CTCTGTTGTTTTGAGTGTCC+TGG + chr7_4:11200584-11200603 Msa1140010:intron 45.0%
!! GTCCTGGTATTGGTGCTTTA+TGG + chr7_4:11200600-11200619 Msa1140010:intron 45.0%
! CTCCATAAAGCACCAATACC+AGG - chr7_4:11200605-11200624 None:intergenic 45.0%
TTGAACCTGCAATCAAGCCA+GGG + chr7_4:11200911-11200930 Msa1140010:CDS 45.0%
TATAATCGGTCTGCCAACTG+AGG - chr7_4:11201179-11201198 None:intergenic 45.0%
!! TTTAATTAAATAATTAAGTA+TGG + chr7_4:11198196-11198215 Msa1140010:intron 5.0%
TTACGACCTACAAAGGGACG+GGG - chr7_4:11198146-11198165 None:intergenic 50.0%
CTTACGACCTACAAAGGGAC+GGG - chr7_4:11198147-11198166 None:intergenic 50.0%
CCTTACGACCTACAAAGGGA+CGG - chr7_4:11198148-11198167 None:intergenic 50.0%
GTTCACTGAGTCTACCAGCA+AGG + chr7_4:11198328-11198347 Msa1140010:CDS 50.0%
CATCATCTGTTGGAGTGACC+TGG + chr7_4:11198390-11198409 Msa1140010:CDS 50.0%
GTTGGAGTGACCTGGCATTT+AGG + chr7_4:11198398-11198417 Msa1140010:CDS 50.0%
GAGGGTTATATCACCAGCTC+AGG - chr7_4:11198593-11198612 None:intergenic 50.0%
TCCTGCTCTTTGAGCTGTTG+AGG + chr7_4:11198792-11198811 Msa1140010:intron 50.0%
ACCTCAACAGCTCAAAGAGC+AGG - chr7_4:11198796-11198815 None:intergenic 50.0%
TGTTCCCCGATATCTGCCAT+CGG + chr7_4:11198831-11198850 Msa1140010:intron 50.0%
ACAACCCCGATGGCAGATAT+CGG - chr7_4:11198840-11198859 None:intergenic 50.0%
GAGCTAGTAAAGCTAGGCGT+GGG - chr7_4:11198942-11198961 None:intergenic 50.0%
GAGCTCGAGCTAGTAAAGCT+AGG - chr7_4:11198948-11198967 None:intergenic 50.0%
ACTAGCTCGAGCTCATCTGA+TGG + chr7_4:11198954-11198973 Msa1140010:intron 50.0%
CTAGCTCGAGCTCATCTGAT+GGG + chr7_4:11198955-11198974 Msa1140010:intron 50.0%
TAGCTCGAGCTCATCTGATG+GGG + chr7_4:11198956-11198975 Msa1140010:intron 50.0%
!! TGGGGCCATTTTATTGGGTC+TGG + chr7_4:11198974-11198993 Msa1140010:intron 50.0%
GGAGGCCAGACCCAATAAAA+TGG - chr7_4:11198982-11199001 None:intergenic 50.0%
GAGGGTTAAATCGGAAGGGT+TGG + chr7_4:11199594-11199613 Msa1140010:intron 50.0%
GTTGGGTGTTTGATTCACCG+TGG + chr7_4:11199612-11199631 Msa1140010:intron 50.0%
! CGTGGTGGAAGAAGATAGAG+AGG + chr7_4:11199630-11199649 Msa1140010:intron 50.0%
!! GAGGTTAGAGAAGGGTGTTG+AGG + chr7_4:11199649-11199668 Msa1140010:intron 50.0%
!! GGTTAGAGAAGGGTGTTGAG+GGG + chr7_4:11199651-11199670 Msa1140010:intron 50.0%
!! GTTAGAGAAGGGTGTTGAGG+GGG + chr7_4:11199652-11199671 Msa1140010:intron 50.0%
TGGTCGAAACTGTGGATGAC+TGG + chr7_4:11199740-11199759 Msa1140010:intron 50.0%
GGTCGAAACTGTGGATGACT+GGG + chr7_4:11199741-11199760 Msa1140010:intron 50.0%
TCTTCCTCCTTGAATCCACC+TGG - chr7_4:11200102-11200121 None:intergenic 50.0%
TTCAGTCCGTTTGGAGAGCT+AGG + chr7_4:11200160-11200179 Msa1140010:intron 50.0%
!! AGGTTTGGTGTGTAATGGCC+GGG + chr7_4:11200318-11200337 Msa1140010:intron 50.0%
GTTGAACCTGCAATCAAGCC+AGG + chr7_4:11200910-11200929 Msa1140010:CDS 50.0%
TGAACCTGCAATCAAGCCAG+GGG + chr7_4:11200912-11200931 Msa1140010:CDS 50.0%
CATACCAAAGTTGCATCCCC+TGG - chr7_4:11200931-11200950 None:intergenic 50.0%
! CTATGTGGTGCTGGGTGAAG+TGG + chr7_4:11197773-11197792 Msa1140010:five_prime_UTR 55.0%
CAAAGGGACGGGGAAAGACA+AGG - chr7_4:11198136-11198155 None:intergenic 55.0%
GTCTTTCCCCGTCCCTTTGT+AGG + chr7_4:11198137-11198156 Msa1140010:CDS 55.0%
CCGTCCCTTTGTAGGTCGTA+AGG + chr7_4:11198145-11198164 Msa1140010:CDS 55.0%
!! ACTGCTTTGGAGGAGCAGGA+GGG - chr7_4:11198611-11198630 None:intergenic 55.0%
!! CTTCACTGCTTTGGAGGAGC+AGG - chr7_4:11198615-11198634 None:intergenic 55.0%
TGGAGCGTATCACAACTCGG+AGG - chr7_4:11198741-11198760 None:intergenic 55.0%
GTTCCCCGATATCTGCCATC+GGG + chr7_4:11198832-11198851 Msa1140010:intron 55.0%
TTCCCCGATATCTGCCATCG+GGG + chr7_4:11198833-11198852 Msa1140010:intron 55.0%
AACCCCGATGGCAGATATCG+GGG - chr7_4:11198838-11198857 None:intergenic 55.0%
CAACCCCGATGGCAGATATC+GGG - chr7_4:11198839-11198858 None:intergenic 55.0%
CGAGCTAGTAAAGCTAGGCG+TGG - chr7_4:11198943-11198962 None:intergenic 55.0%
GGGTGTTTGATTCACCGTGG+TGG + chr7_4:11199615-11199634 Msa1140010:intron 55.0%
TGTGTAATGGCCGGGTGTTC+TGG + chr7_4:11200326-11200345 Msa1140010:intron 55.0%
CAGTGGTGTTCCAGAACACC+CGG - chr7_4:11200339-11200358 None:intergenic 55.0%
CAAGCCAGGGGATGCAACTT+TGG + chr7_4:11200924-11200943 Msa1140010:CDS 55.0%
!! CACTGCTTTGGAGGAGCAGG+AGG - chr7_4:11198612-11198631 None:intergenic 60.0%
! GGTGTTGAGGGGGCAAGTCA+GGG + chr7_4:11199662-11199681 Msa1140010:intron 60.0%
TTGAGGGGGCAAGTCAGGGT+TGG + chr7_4:11199666-11199685 Msa1140010:intron 60.0%
! GCATCCCCTGGCTTGATTGC+AGG - chr7_4:11200919-11200938 None:intergenic 60.0%
TGCCATCGGGGTTGTGCGCT+TGG + chr7_4:11198845-11198864 Msa1140010:intron 65.0%
AGCCAAGCGCACAACCCCGA+TGG - chr7_4:11198850-11198869 None:intergenic 65.0%
!! GGGTGTTGAGGGGGCAAGTC+AGG + chr7_4:11199661-11199680 Msa1140010:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 11197708 11201440 11197708 ID=Msa1140010;Name=Msa1140010
chr7_4 mRNA 11197708 11201440 11197708 ID=Msa1140010-mRNA-1;Parent=Msa1140010;Name=Msa1140010-mRNA-1;_AED=0.34;_eAED=0.34;_QI=96|1|1|1|1|1|5|241|224
chr7_4 exon 11197708 11198166 11197708 ID=Msa1140010-mRNA-1:exon:2648;Parent=Msa1140010-mRNA-1
chr7_4 exon 11198305 11198419 11198305 ID=Msa1140010-mRNA-1:exon:2649;Parent=Msa1140010-mRNA-1
chr7_4 exon 11199189 11199270 11199189 ID=Msa1140010-mRNA-1:exon:2650;Parent=Msa1140010-mRNA-1
chr7_4 exon 11200894 11200945 11200894 ID=Msa1140010-mRNA-1:exon:2651;Parent=Msa1140010-mRNA-1
chr7_4 exon 11201137 11201440 11201137 ID=Msa1140010-mRNA-1:exon:2652;Parent=Msa1140010-mRNA-1
chr7_4 five_prime_UTR 11197708 11197803 11197708 ID=Msa1140010-mRNA-1:five_prime_utr;Parent=Msa1140010-mRNA-1
chr7_4 CDS 11197804 11198166 11197804 ID=Msa1140010-mRNA-1:cds;Parent=Msa1140010-mRNA-1
chr7_4 CDS 11198305 11198419 11198305 ID=Msa1140010-mRNA-1:cds;Parent=Msa1140010-mRNA-1
chr7_4 CDS 11199189 11199270 11199189 ID=Msa1140010-mRNA-1:cds;Parent=Msa1140010-mRNA-1
chr7_4 CDS 11200894 11200945 11200894 ID=Msa1140010-mRNA-1:cds;Parent=Msa1140010-mRNA-1
chr7_4 CDS 11201137 11201199 11201137 ID=Msa1140010-mRNA-1:cds;Parent=Msa1140010-mRNA-1
chr7_4 three_prime_UTR 11201200 11201440 11201200 ID=Msa1140010-mRNA-1:three_prime_utr;Parent=Msa1140010-mRNA-1
Gene Sequence

>Msa1140010

ATGTTTATGGTGTGTAGTTCTAGTAGCAGCACACAAGTGCTAATATTGAACTCAGCTTCCCCTTTGACTTCTTTGTCACATAGAAGAATCTATACTCCAAATTCAGTTACTAAGGTTGTTGGAATTGGAAGAAGAAGAGACAGAAAATGGAATGTGGCAGTTAATAACAGTGGTGAAAGTAATTCAGTTACAACAACTACCACACACTTTGATGATAACAACGTTGTAGATTCAGCTTCAACAGTGGTGAGAAATTTCTATGAGGGAATCAATGCACATGATGTGGATTCTGTACAATATCTTATCTCTGAAAATTGTGTGTATGAGGACCTTGTCTTTCCCCGTCCCTTTGTAGGTCGTAAGGAAATTATAGAGTTCTTCAAAAAGTTCACTGAGTCTACCAGCAAGGATCTGCAGTTTGTTATTGATGATTTGTCTATGGAGGACACATCATCTGTTGGAGTGACCTGGCATTTAGAATGGAAAGGAAAGCCCTTTCCCTATAGCAAAGGATGCAGTTTTTATCGTTTGGAAGTGATCAATGGCAAGAGACAGATCACATATGGACGGGACTGTGTTGAACCTGCAATCAAGCCAGGGGATGCAACTTTGGCAGTGATAAAGAGTGTGACATGGCTTCTTCAACGATTTCCTCAGTTGGCAGACCGATTATAG

Protein sequence

>Msa1140010

MFMVCSSSSSTQVLILNSASPLTSLSHRRIYTPNSVTKVVGIGRRRDRKWNVAVNNSGESNSVTTTTTHFDDNNVVDSASTVVRNFYEGINAHDVDSVQYLISENCVYEDLVFPRPFVGRKEIIEFFKKFTESTSKDLQFVIDDLSMEDTSSVGVTWHLEWKGKPFPYSKGCSFYRLEVINGKRQITYGRDCVEPAIKPGDATLAVIKSVTWLLQRFPQLADRL*