AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0081290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081290 MtrunA17_Chr1g0193701 87.589 282 25 4 1 280 1 274 3.45e-176 486
Msa0081290 MtrunA17_Chr8g0384911 37.975 158 82 4 106 262 107 249 2.25e-20 90.9
Msa0081290 MtrunA17_Chr8g0384911 29.545 176 100 5 99 270 350 505 4.77e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081290 AT4G01650.2 60.204 196 72 3 84 275 16 209 7.25e-81 243
Msa0081290 AT4G01650.1 60.204 196 72 3 84 275 93 286 7.38e-80 243
Msa0081290 AT4G01650.3 64.885 131 42 2 84 212 93 221 6.75e-56 180
Msa0081290 AT5G08720.1 38.415 164 85 4 106 268 97 245 1.28e-22 97.8
Msa0081290 AT5G08720.1 27.717 184 111 4 99 280 328 491 1.25e-13 71.2

Find 82 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCACCCCTTACGGATTTA+AGG 0.163287 1_2:+59787571 None:intergenic
CTGCAAGAGTCGAGCAAAAT+TGG 0.187080 1_2:+59790212 None:intergenic
ATCATCATCGGTGTCGTTTA+AGG 0.240676 1_2:+59790470 None:intergenic
AACGACACCGATGATGATTC+TGG 0.246364 1_2:-59790465 Msa0081290:CDS
TTCAGCTCTTCGAAGGAAAA+TGG 0.305062 1_2:-59788430 Msa0081290:CDS
AGGTTGGCTGATTTCATTCC+TGG 0.313493 1_2:-59790267 Msa0081290:CDS
CTCAGTAAATTGATCCAAAA+AGG 0.327199 1_2:-59790237 Msa0081290:CDS
CTAAAATATCTCCCAAGTTC+TGG 0.331036 1_2:-59787402 Msa0081290:three_prime_UTR
GGAGAGCAGAACTTGGCATT+TGG 0.347544 1_2:-59788560 Msa0081290:CDS
ACGCTTCACTTGATTCCATT+TGG 0.351261 1_2:-59790311 Msa0081290:CDS
GAGAGCAGAACTTGGCATTT+GGG 0.357576 1_2:-59788559 Msa0081290:CDS
AGAGAAGAAAAGGGTGGAAA+TGG 0.362769 1_2:+59790590 None:intergenic
CGAAGATGTGGTTGCCCGTT+CGG 0.371633 1_2:-59787632 Msa0081290:CDS
AGGAAAGTTTGCGTGGAAAC+TGG 0.376996 1_2:+59790642 None:intergenic
TAATACAAGTAAAGTTCATT+TGG 0.385292 1_2:-59787473 Msa0081290:three_prime_UTR
TCGGTGTCGTTTAAGGTGGT+TGG 0.404356 1_2:+59790477 None:intergenic
CGGTGTCGTTTAAGGTGGTT+GGG 0.405611 1_2:+59790478 None:intergenic
TCAGAGTCGTTGGTTGAAGA+TGG 0.419018 1_2:-59790405 Msa0081290:CDS
TTTCTGAGCTTCACCCCTTA+CGG 0.425093 1_2:+59787563 None:intergenic
TAAGGTGGTTGGGTTGTGTT+TGG 0.430644 1_2:+59790488 None:intergenic
CTACCCTCTATCAGCCGAAC+GGG 0.437593 1_2:+59787618 None:intergenic
GGGTTAAAATTTGATGCTAA+AGG 0.447148 1_2:-59788539 Msa0081290:CDS
ATCAGTCAAGATATTCCAAA+TGG 0.452946 1_2:+59790296 None:intergenic
TGATGATTCTGGGACTCTAT+TGG 0.453023 1_2:-59790454 Msa0081290:CDS
TTTGGTGTCAATTCTCACTT+AGG 0.457581 1_2:-59787455 Msa0081290:three_prime_UTR
CGAACGGGCAACCACATCTT+CGG 0.459917 1_2:+59787633 None:intergenic
GTCGTGTTAATTTCTCGAAC+CGG 0.460132 1_2:+59787681 None:intergenic
TGCATTATCAATTGTGGTTG+TGG 0.464495 1_2:-59790758 Msa0081290:five_prime_UTR
TGCAAGAGTCGAGCAAAATT+GGG 0.469520 1_2:+59790213 None:intergenic
GTTGCCCGTTCGGCTGATAG+AGG 0.471438 1_2:-59787622 Msa0081290:CDS
CAGAGTCGTTGGTTGAAGAT+GGG 0.478415 1_2:-59790404 Msa0081290:CDS
ATAGACTTCAAGATGATTGA+AGG 0.479763 1_2:-59788458 Msa0081290:CDS
CTTGACTGATTATGAAAGGT+TGG 0.487454 1_2:-59790283 Msa0081290:CDS
GAGGGTGTGAAATGAAAAGG+GGG 0.500049 1_2:+59790564 None:intergenic
ACGACACCGATGATGATTCT+GGG 0.503280 1_2:-59790464 Msa0081290:CDS
GTGTGGTCCAGTCCAGAACT+TGG 0.506799 1_2:+59787390 None:intergenic
AAAAGAACCTTAAATCCGTA+AGG 0.508599 1_2:-59787578 Msa0081290:CDS
GCATTATCAATTGTGGTTGT+GGG 0.509291 1_2:-59790757 Msa0081290:five_prime_UTR
GTGAGGGTGTGAAATGAAAA+GGG 0.510813 1_2:+59790562 None:intergenic
GGTGAGGGTGTGAAATGAAA+AGG 0.512236 1_2:+59790561 None:intergenic
GAAATGGAAGCCGGTGGTGA+TGG 0.514183 1_2:+59790606 None:intergenic
ATATCTCCCAAGTTCTGGAC+TGG 0.517727 1_2:-59787397 Msa0081290:three_prime_UTR
AGTTGAAGATTCAGAGTCGT+TGG 0.518855 1_2:-59790415 Msa0081290:CDS
GAATTGGAGACTCTTCCATC+TGG 0.520472 1_2:-59788494 Msa0081290:CDS
TTAACCTGCATTATCAATTG+TGG 0.521133 1_2:-59790764 Msa0081290:five_prime_UTR
TGAGGGTGTGAAATGAAAAG+GGG 0.522808 1_2:+59790563 None:intergenic
ACAAGAGAAAGAGAATATAC+AGG 0.525886 1_2:-59790704 Msa0081290:five_prime_UTR
TGGAAGTTGTGAGGACTCTC+CGG 0.533175 1_2:-59787700 Msa0081290:CDS
ACAGATTGGAGAGCAGAACT+TGG 0.540322 1_2:-59788567 Msa0081290:intron
CCCTCTTCAACCATCACCAC+CGG 0.549271 1_2:-59790616 Msa0081290:CDS
AAAGAACCTTAAATCCGTAA+GGG 0.553093 1_2:-59787577 Msa0081290:CDS
GATGTTTAACGAACATGACT+TGG 0.555776 1_2:+59790539 None:intergenic
TAGACTTCAAGATGATTGAA+GGG 0.561714 1_2:-59788457 Msa0081290:CDS
GCCGGTGGTGATGGTTGAAG+AGG 0.565263 1_2:+59790615 None:intergenic
ATTCACGCAGAATTGAGTCT+AGG 0.570895 1_2:-59790344 Msa0081290:CDS
AGAGTCGTTGGTTGAAGATG+GGG 0.585019 1_2:-59790403 Msa0081290:CDS
AGGGAGTAGGAAAGTTTGCG+TGG 0.586983 1_2:+59790635 None:intergenic
ATCATCGGTGTCGTTTAAGG+TGG 0.588547 1_2:+59790473 None:intergenic
TTGGAAGCGCGATACAAAGA+AGG 0.590076 1_2:+59790507 None:intergenic
TTGCCCGTTCGGCTGATAGA+GGG 0.591142 1_2:-59787621 Msa0081290:CDS
ATGTCACGCTTCATACCAGA+TGG 0.591702 1_2:+59788479 None:intergenic
AACGAACATGACTTGGGTGA+GGG 0.599864 1_2:+59790546 None:intergenic
ATATCTTGACTGATTATGAA+AGG 0.602548 1_2:-59790287 Msa0081290:CDS
AAAAGGGTGGAAATGGAAGC+CGG 0.605384 1_2:+59790597 None:intergenic
ATGTTTAACGAACATGACTT+GGG 0.610648 1_2:+59790540 None:intergenic
ACAACCACAATTGATAATGC+AGG 0.610655 1_2:+59790760 None:intergenic
AGACTTCAAGATGATTGAAG+GGG 0.615498 1_2:-59788456 Msa0081290:CDS
AATTTACTGAGGGCAAGACC+AGG 0.620856 1_2:+59790249 None:intergenic
AAGAACCTTAAATCCGTAAG+GGG 0.627039 1_2:-59787576 Msa0081290:CDS
CCGGTGGTGATGGTTGAAGA+GGG 0.627951 1_2:+59790616 None:intergenic
TAACGAACATGACTTGGGTG+AGG 0.630441 1_2:+59790545 None:intergenic
TGTGGTCCAGTCCAGAACTT+GGG 0.631356 1_2:+59787391 None:intergenic
GTGATGGTTGAAGAGGGAGT+AGG 0.631455 1_2:+59790622 None:intergenic
TCTACCCTCTATCAGCCGAA+CGG 0.635039 1_2:+59787617 None:intergenic
TTTCAGCGATGGAAGTTGTG+AGG 0.646341 1_2:-59787709 Msa0081290:CDS
TAGAGTCCCAGAATCATCAT+CGG 0.656535 1_2:+59790458 None:intergenic
GGGGTGAGAGAAGAAAAGGG+TGG 0.670192 1_2:+59790584 None:intergenic
TGGGACTCTATTGGTGACAG+AGG 0.685716 1_2:-59790445 Msa0081290:CDS
TTGATGTTAAGCCGAAGATG+TGG 0.693995 1_2:-59787644 Msa0081290:CDS
ATCTTTGACTCAATCAACGT+AGG 0.697511 1_2:+59790807 None:intergenic
AGGGTGTGAAATGAAAAGGG+GGG 0.736177 1_2:+59790565 None:intergenic
AGGGTGGAAATGGAAGCCGG+TGG 0.769057 1_2:+59790600 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTCATTTTTTATTAAT+CGG - chr1_2:59788129-59788148 Msa0081290:intron 10.0%
!! ATAAGAAGAAAAAAAAAAAT+AGG - chr1_2:59788997-59789016 Msa0081290:intron 10.0%
!!! CTTTTCATTTTTTATTAATC+GGG - chr1_2:59788130-59788149 Msa0081290:intron 15.0%
!! TAATCTTTAATATGGATAAT+GGG + chr1_2:59788308-59788327 None:intergenic 15.0%
!! ATAATCTTTAATATGGATAA+TGG + chr1_2:59788309-59788328 None:intergenic 15.0%
!! AATACACATAATCTTTAATA+TGG + chr1_2:59788316-59788335 None:intergenic 15.0%
!! ATATTAAAGATTATGTGTAT+TGG - chr1_2:59788315-59788334 Msa0081290:intron 15.0%
!!! ACTTGATTTTATTAAATTCA+CGG - chr1_2:59788478-59788497 Msa0081290:CDS 15.0%
!! TTGTTTATATTGCAAATTTA+GGG + chr1_2:59788756-59788775 None:intergenic 15.0%
!! TTTGTTTATATTGCAAATTT+AGG + chr1_2:59788757-59788776 None:intergenic 15.0%
!!! ATTGTTATTTTCATCAAATA+CGG - chr1_2:59788869-59788888 Msa0081290:intron 15.0%
!!! ATTTTCTTGAAAAGTAAATT+TGG - chr1_2:59789578-59789597 Msa0081290:intron 15.0%
!! TCGAAAACAAAATAAAAATA+AGG + chr1_2:59789990-59790009 None:intergenic 15.0%
!! TTGTAATTAAAAGTAAAAAC+AGG - chr1_2:59790108-59790127 Msa0081290:intron 15.0%
!!! TTATGTAAATTTTAGAAACT+AGG + chr1_2:59790175-59790194 None:intergenic 15.0%
!! TAAAATTTACATAAACTTAG+TGG - chr1_2:59790181-59790200 Msa0081290:intron 15.0%
!!! TAGGAATTACTCTAATTTTT+TGG + chr1_2:59788265-59788284 None:intergenic 20.0%
!! ATTCTAGATATAAAAGTAGT+AGG - chr1_2:59788503-59788522 Msa0081290:CDS 20.0%
!!! AAACTGTATAGTTCTAAATA+GGG - chr1_2:59788599-59788618 Msa0081290:intron 20.0%
!!! AAATGCTGTATTTTATAGTT+TGG - chr1_2:59788697-59788716 Msa0081290:intron 20.0%
!!! TATGTTTTAGCATTTAAAAC+CGG + chr1_2:59788908-59788927 None:intergenic 20.0%
!!! AGGATATGATTTTGAATATT+AGG - chr1_2:59789362-59789381 Msa0081290:intron 20.0%
!! GGTTAAAATTAAACTGTATA+TGG - chr1_2:59789383-59789402 Msa0081290:intron 20.0%
!!! AAATAAGGTATCATTTAAAG+AGG + chr1_2:59789975-59789994 None:intergenic 20.0%
!! TGGTGAAAATAATGAAAAAT+TGG + chr1_2:59790035-59790054 None:intergenic 20.0%
!!! ACAATTTTTTAAACCAAACA+TGG - chr1_2:59790148-59790167 Msa0081290:intron 20.0%
!! AATTGCACATATTGAAAATT+GGG + chr1_2:59790359-59790378 None:intergenic 20.0%
!! TAATACAAGTAAAGTTCATT+TGG - chr1_2:59790729-59790748 Msa0081290:five_prime_UTR 20.0%
! ATATCTTGACTGATTATGAA+AGG - chr1_2:59787915-59787934 Msa0081290:intron 25.0%
!! TTTTTGGATCAATTTACTGA+GGG + chr1_2:59787966-59787985 None:intergenic 25.0%
! ATATTGTATTAGTGTTGTGT+TGG - chr1_2:59788096-59788115 Msa0081290:intron 25.0%
! TATTGTATTAGTGTTGTGTT+GGG - chr1_2:59788097-59788116 Msa0081290:intron 25.0%
!!! TTCATTTTTTATTAATCGGG+CGG - chr1_2:59788133-59788152 Msa0081290:intron 25.0%
! AATAATACAACCTAGAAAGT+AGG + chr1_2:59788284-59788303 None:intergenic 25.0%
! TAGATATAAAAGTAGTAGGA+AGG - chr1_2:59788507-59788526 Msa0081290:CDS 25.0%
! AGATATAAAAGTAGTAGGAA+GGG - chr1_2:59788508-59788527 Msa0081290:CDS 25.0%
!! TTAGAACTATACAGTTTGTT+TGG + chr1_2:59788596-59788615 None:intergenic 25.0%
!!! CAAACTGTATAGTTCTAAAT+AGG - chr1_2:59788598-59788617 Msa0081290:intron 25.0%
!!! AACAAAAGTCTTATTGATTG+AGG - chr1_2:59788771-59788790 Msa0081290:intron 25.0%
!!! ACAAAAGTCTTATTGATTGA+GGG - chr1_2:59788772-59788791 Msa0081290:intron 25.0%
!! GTTTTCAATTCAATGTAGTT+TGG - chr1_2:59788812-59788831 Msa0081290:intron 25.0%
! TTAAAATAAAAAGCCACTCA+TGG + chr1_2:59789085-59789104 None:intergenic 25.0%
! TATGATTTCCATATATGTCA+TGG - chr1_2:59789167-59789186 Msa0081290:intron 25.0%
! TAACTATACCTTTAAACTGT+GGG - chr1_2:59789232-59789251 Msa0081290:intron 25.0%
! TAACTTGGAGAAAGTAAATT+AGG + chr1_2:59789473-59789492 None:intergenic 25.0%
!! CATTGAATTTCTAAAGGTTA+AGG + chr1_2:59789499-59789518 None:intergenic 25.0%
!! CTTAACCTTTAGAAATTCAA+TGG - chr1_2:59789497-59789516 Msa0081290:intron 25.0%
!!! AGATTGTTTTGAGAAAGAAT+TGG - chr1_2:59789692-59789711 Msa0081290:intron 25.0%
!!! TTGGATTTTTAGAACTGAAT+AGG - chr1_2:59789927-59789946 Msa0081290:intron 25.0%
! AAAAACAGGAGTTGAAAATT+AGG - chr1_2:59790122-59790141 Msa0081290:intron 25.0%
! ATTGCACATATTGAAAATTG+GGG + chr1_2:59790358-59790377 None:intergenic 25.0%
! CAATTGCACATATTGAAAAT+TGG + chr1_2:59790360-59790379 None:intergenic 25.0%
!!! ATTACATTTTGAAACCATGT+AGG - chr1_2:59790405-59790424 Msa0081290:CDS 25.0%
TTAACCTGCATTATCAATTG+TGG - chr1_2:59787438-59787457 Msa0081290:three_prime_UTR 30.0%
ACAAGAGAAAGAGAATATAC+AGG - chr1_2:59787498-59787517 Msa0081290:three_prime_UTR 30.0%
ATGTTTAACGAACATGACTT+GGG + chr1_2:59787665-59787684 None:intergenic 30.0%
ATCAGTCAAGATATTCCAAA+TGG + chr1_2:59787909-59787928 None:intergenic 30.0%
! CTTTTTGGATCAATTTACTG+AGG + chr1_2:59787967-59787986 None:intergenic 30.0%
CTCAGTAAATTGATCCAAAA+AGG - chr1_2:59787965-59787984 Msa0081290:intron 30.0%
!!! TCATTTTTTATTAATCGGGC+GGG - chr1_2:59788134-59788153 Msa0081290:intron 30.0%
ATATCAACATTGTTGAGCTA+GGG + chr1_2:59788183-59788202 None:intergenic 30.0%
AATATCAACATTGTTGAGCT+AGG + chr1_2:59788184-59788203 None:intergenic 30.0%
TAGAGTAATTCCTACTTTCT+AGG - chr1_2:59788271-59788290 Msa0081290:intron 30.0%
GATATAAAAGTAGTAGGAAG+GGG - chr1_2:59788509-59788528 Msa0081290:CDS 30.0%
TTGACATAAAATGACCTTGT+TGG + chr1_2:59788550-59788569 None:intergenic 30.0%
!!! TTGGTTTTGCTTCTTTGTAA+TGG - chr1_2:59788716-59788735 Msa0081290:intron 30.0%
! TATATTGCAAATTTAGGGCA+AGG + chr1_2:59788751-59788770 None:intergenic 30.0%
!! CAAAAGTCTTATTGATTGAG+GGG - chr1_2:59788773-59788792 Msa0081290:intron 30.0%
TTCTTATCTACTCTAGTATG+AGG + chr1_2:59788984-59789003 None:intergenic 30.0%
ATAGGTCAACATGATTATGT+TGG - chr1_2:59789015-59789034 Msa0081290:intron 30.0%
TGCTTTAACAGTAACACTTT+AGG + chr1_2:59789055-59789074 None:intergenic 30.0%
! AAGTGTTACTGTTAAAGCAT+AGG - chr1_2:59789056-59789075 Msa0081290:intron 30.0%
ATGATTATATGCCATGAAGT+AGG + chr1_2:59789121-59789140 None:intergenic 30.0%
CATAACTTCCATGACATATA+TGG + chr1_2:59789178-59789197 None:intergenic 30.0%
GTAACTATACCTTTAAACTG+TGG - chr1_2:59789231-59789250 Msa0081290:intron 30.0%
TAAAGGTTAAGGTTGTAACT+TGG + chr1_2:59789488-59789507 None:intergenic 30.0%
! TTTTTCCCTGTTCGTAAATT+TGG - chr1_2:59789547-59789566 Msa0081290:intron 30.0%
TCAAACCAAATTTACGAACA+GGG + chr1_2:59789555-59789574 None:intergenic 30.0%
TTCAAACCAAATTTACGAAC+AGG + chr1_2:59789556-59789575 None:intergenic 30.0%
GTTCCATTATCTTAACAGAT+TGG - chr1_2:59789621-59789640 Msa0081290:intron 30.0%
TCTCCAATCTGTTAAGATAA+TGG + chr1_2:59789627-59789646 None:intergenic 30.0%
GGGTTAAAATTTGATGCTAA+AGG - chr1_2:59789663-59789682 Msa0081290:intron 30.0%
ATAGACTTCAAGATGATTGA+AGG - chr1_2:59789744-59789763 Msa0081290:intron 30.0%
TAGACTTCAAGATGATTGAA+GGG - chr1_2:59789745-59789764 Msa0081290:intron 30.0%
CAGAAGAATTCTAATAAGAG+GGG + chr1_2:59789828-59789847 None:intergenic 30.0%
CCAGAAGAATTCTAATAAGA+GGG + chr1_2:59789829-59789848 None:intergenic 30.0%
TCCAGAAGAATTCTAATAAG+AGG + chr1_2:59789830-59789849 None:intergenic 30.0%
!! CGCAAGTATTTTTCAAATGT+TGG - chr1_2:59789908-59789927 Msa0081290:intron 30.0%
!! TTTTGGTAACCAACTACAAA+TGG - chr1_2:59790220-59790239 Msa0081290:CDS 30.0%
AAAAGAACCTTAAATCCGTA+AGG - chr1_2:59790624-59790643 Msa0081290:CDS 30.0%
AAAGAACCTTAAATCCGTAA+GGG - chr1_2:59790625-59790644 Msa0081290:CDS 30.0%
! AGAACTTGGGAGATATTTTA+GGG + chr1_2:59790801-59790820 None:intergenic 30.0%
ATCTTTGACTCAATCAACGT+AGG + chr1_2:59787398-59787417 None:intergenic 35.0%
!! ACAACCACAATTGATAATGC+AGG + chr1_2:59787445-59787464 None:intergenic 35.0%
TGCATTATCAATTGTGGTTG+TGG - chr1_2:59787444-59787463 Msa0081290:three_prime_UTR 35.0%
GCATTATCAATTGTGGTTGT+GGG - chr1_2:59787445-59787464 Msa0081290:three_prime_UTR 35.0%
GATGTTTAACGAACATGACT+TGG + chr1_2:59787666-59787685 None:intergenic 35.0%
CTTGACTGATTATGAAAGGT+TGG - chr1_2:59787919-59787938 Msa0081290:intron 35.0%
TCTTGCAGGTATAATGCAAT+TGG - chr1_2:59788005-59788024 Msa0081290:intron 35.0%
CTTGCAGGTATAATGCAATT+GGG - chr1_2:59788006-59788025 Msa0081290:intron 35.0%
TTGCAGGTATAATGCAATTG+GGG - chr1_2:59788007-59788026 Msa0081290:intron 35.0%
TAAGTTAGACACATTCACTC+AGG - chr1_2:59788206-59788225 Msa0081290:intron 35.0%
!! TTTTTGGTCTGTAAACGAAG+TGG + chr1_2:59788249-59788268 None:intergenic 35.0%
TATGTGTATTGGACACAACA+CGG - chr1_2:59788326-59788345 Msa0081290:intron 35.0%
GTTTAGTTGCATGCTTGATT+TGG - chr1_2:59788382-59788401 Msa0081290:intron 35.0%
ACATAAAATGACCTTGTTGG+TGG + chr1_2:59788547-59788566 None:intergenic 35.0%
! AAATTTAGGGCAAGGTCATA+AGG + chr1_2:59788743-59788762 None:intergenic 35.0%
TTATCTACTCTAGTATGAGG+TGG + chr1_2:59788981-59789000 None:intergenic 35.0%
AGTTATGTATGCATCAATCG+TGG - chr1_2:59789191-59789210 Msa0081290:intron 35.0%
GTTATGTATGCATCAATCGT+GGG - chr1_2:59789192-59789211 Msa0081290:intron 35.0%
!!! GTTTTTTGTGACAGATAGAC+AGG - chr1_2:59789342-59789361 Msa0081290:intron 35.0%
AGACTTCAAGATGATTGAAG+GGG - chr1_2:59789746-59789765 Msa0081290:intron 35.0%
! AGGAAAATGGTCTATTTTGC+AGG - chr1_2:59789785-59789804 Msa0081290:intron 35.0%
! AAATGGTCTATTTTGCAGGT+AGG - chr1_2:59789789-59789808 Msa0081290:intron 35.0%
CCCTCTTATTAGAATTCTTC+TGG - chr1_2:59789826-59789845 Msa0081290:intron 35.0%
! AGTTTGCATGGTTTTTATGC+TGG + chr1_2:59789854-59789873 None:intergenic 35.0%
! ATTTTCACCATTTCCTATGC+TGG - chr1_2:59790045-59790064 Msa0081290:intron 35.0%
TTAGAAACTAGGACCATGTT+TGG + chr1_2:59790164-59790183 None:intergenic 35.0%
!!! GATTCTAGCTAGCGTTTTTT+TGG - chr1_2:59790203-59790222 Msa0081290:intron 35.0%
AAATGGAGTGCATCTTATCT+TGG - chr1_2:59790237-59790256 Msa0081290:CDS 35.0%
! TATTCAGGTTATTGACCAAG+TGG - chr1_2:59790272-59790291 Msa0081290:CDS 35.0%
! ATTCAGGTTATTGACCAAGT+GGG - chr1_2:59790273-59790292 Msa0081290:CDS 35.0%
ATCATAATCACAATCCCACT+TGG + chr1_2:59790290-59790309 None:intergenic 35.0%
CACATATTGAAAATTGGGGA+AGG + chr1_2:59790354-59790373 None:intergenic 35.0%
! ACTTGTTGAATACTCCTACA+TGG + chr1_2:59790422-59790441 None:intergenic 35.0%
AAGAACCTTAAATCCGTAAG+GGG - chr1_2:59790626-59790645 Msa0081290:CDS 35.0%
!! TTTGGTGTCAATTCTCACTT+AGG - chr1_2:59790747-59790766 Msa0081290:five_prime_UTR 35.0%
!! GAACTTGGGAGATATTTTAG+GGG + chr1_2:59790800-59790819 None:intergenic 35.0%
! CAGAACTTGGGAGATATTTT+AGG + chr1_2:59790802-59790821 None:intergenic 35.0%
CTAAAATATCTCCCAAGTTC+TGG - chr1_2:59790800-59790819 Msa0081290:five_prime_UTR 35.0%
AGAGAAGAAAAGGGTGGAAA+TGG + chr1_2:59787615-59787634 None:intergenic 40.0%
! TGAGGGTGTGAAATGAAAAG+GGG + chr1_2:59787642-59787661 None:intergenic 40.0%
! GTGAGGGTGTGAAATGAAAA+GGG + chr1_2:59787643-59787662 None:intergenic 40.0%
!! ATCATCATCGGTGTCGTTTA+AGG + chr1_2:59787735-59787754 None:intergenic 40.0%
TAGAGTCCCAGAATCATCAT+CGG + chr1_2:59787747-59787766 None:intergenic 40.0%
!! TGATGATTCTGGGACTCTAT+TGG - chr1_2:59787748-59787767 Msa0081290:intron 40.0%
AGTTGAAGATTCAGAGTCGT+TGG - chr1_2:59787787-59787806 Msa0081290:intron 40.0%
ATTCACGCAGAATTGAGTCT+AGG - chr1_2:59787858-59787877 Msa0081290:intron 40.0%
ACGCTTCACTTGATTCCATT+TGG - chr1_2:59787891-59787910 Msa0081290:intron 40.0%
! GAGCAAAATTGGGACCTTTT+TGG + chr1_2:59787982-59788001 None:intergenic 40.0%
TGCAAGAGTCGAGCAAAATT+GGG + chr1_2:59787992-59788011 None:intergenic 40.0%
!! CATGCTTGATTTGGCAAGTT+TGG - chr1_2:59788391-59788410 Msa0081290:intron 40.0%
!! GGTAACTTCTAGTTTGCTCA+GGG + chr1_2:59788575-59788594 None:intergenic 40.0%
!! TGGTAACTTCTAGTTTGCTC+AGG + chr1_2:59788576-59788595 None:intergenic 40.0%
TTAGATGCAGCCACTGTATT+AGG + chr1_2:59788630-59788649 None:intergenic 40.0%
! AGCATTTAAAACCGGTCCAA+CGG + chr1_2:59788900-59788919 None:intergenic 40.0%
! ATGTGAAGCATCCTACTTCA+TGG - chr1_2:59789107-59789126 Msa0081290:intron 40.0%
TCAGTACTCCCACAGTTTAA+AGG + chr1_2:59789243-59789262 None:intergenic 40.0%
TCCAAGCAATACACATCAGT+TGG - chr1_2:59789280-59789299 Msa0081290:intron 40.0%
ACCAACTGATGTGTATTGCT+TGG + chr1_2:59789284-59789303 None:intergenic 40.0%
CATCATAGCATAGCCAAGTA+TGG - chr1_2:59789414-59789433 Msa0081290:intron 40.0%
! CCTTTAGAAATTCAATGGCG+CGG - chr1_2:59789502-59789521 Msa0081290:intron 40.0%
TTCAGCTCTTCGAAGGAAAA+TGG - chr1_2:59789772-59789791 Msa0081290:intron 40.0%
! CAGAGAAGTGCATAAAACTC+TGG + chr1_2:59789885-59789904 None:intergenic 40.0%
AGATGCACTCCATTTGTAGT+TGG + chr1_2:59790232-59790251 None:intergenic 40.0%
TGGAAAGTCTGCGATTATTC+AGG - chr1_2:59790257-59790276 Msa0081290:CDS 40.0%
GCTAACATCCTAGACAATGA+TGG - chr1_2:59790460-59790479 Msa0081290:CDS 40.0%
CTGCAAAACCATCATTGTCT+AGG + chr1_2:59790471-59790490 None:intergenic 40.0%
GTCGTGTTAATTTCTCGAAC+CGG + chr1_2:59790524-59790543 None:intergenic 40.0%
TTGATGTTAAGCCGAAGATG+TGG - chr1_2:59790558-59790577 Msa0081290:CDS 40.0%
!! GATATTTTAGGGGCGGAATA+TGG + chr1_2:59790790-59790809 None:intergenic 40.0%
AGGAAAGTTTGCGTGGAAAC+TGG + chr1_2:59787563-59787582 None:intergenic 45.0%
AAAAGGGTGGAAATGGAAGC+CGG + chr1_2:59787608-59787627 None:intergenic 45.0%
AGGGTGTGAAATGAAAAGGG+GGG + chr1_2:59787640-59787659 None:intergenic 45.0%
! GAGGGTGTGAAATGAAAAGG+GGG + chr1_2:59787641-59787660 None:intergenic 45.0%
! GGTGAGGGTGTGAAATGAAA+AGG + chr1_2:59787644-59787663 None:intergenic 45.0%
! AACGAACATGACTTGGGTGA+GGG + chr1_2:59787659-59787678 None:intergenic 45.0%
! TAACGAACATGACTTGGGTG+AGG + chr1_2:59787660-59787679 None:intergenic 45.0%
! TTGGAAGCGCGATACAAAGA+AGG + chr1_2:59787698-59787717 None:intergenic 45.0%
! TAAGGTGGTTGGGTTGTGTT+TGG + chr1_2:59787717-59787736 None:intergenic 45.0%
!! ATCATCGGTGTCGTTTAAGG+TGG + chr1_2:59787732-59787751 None:intergenic 45.0%
AACGACACCGATGATGATTC+TGG - chr1_2:59787737-59787756 Msa0081290:intron 45.0%
ACGACACCGATGATGATTCT+GGG - chr1_2:59787738-59787757 Msa0081290:intron 45.0%
! TCAGAGTCGTTGGTTGAAGA+TGG - chr1_2:59787797-59787816 Msa0081290:intron 45.0%
! CAGAGTCGTTGGTTGAAGAT+GGG - chr1_2:59787798-59787817 Msa0081290:intron 45.0%
! AGAGTCGTTGGTTGAAGATG+GGG - chr1_2:59787799-59787818 Msa0081290:intron 45.0%
! AGGTTGGCTGATTTCATTCC+TGG - chr1_2:59787935-59787954 Msa0081290:intron 45.0%
AATTTACTGAGGGCAAGACC+AGG + chr1_2:59787956-59787975 None:intergenic 45.0%
CTGCAAGAGTCGAGCAAAAT+TGG + chr1_2:59787993-59788012 None:intergenic 45.0%
! CAATTTTGCTCGACTCTTGC+AGG - chr1_2:59787991-59788010 Msa0081290:intron 45.0%
TAAACGAAGTGGCAAGCACA+AGG + chr1_2:59788238-59788257 None:intergenic 45.0%
TCACGAGGAACTGTGCTATA+AGG - chr1_2:59788352-59788371 Msa0081290:intron 45.0%
! AATGACCTTGTTGGTGGATG+AGG + chr1_2:59788541-59788560 None:intergenic 45.0%
TAGGGACCTTCCTAATACAG+TGG - chr1_2:59788617-59788636 Msa0081290:intron 45.0%
ATGCAGCCACTGTATTAGGA+AGG + chr1_2:59788626-59788645 None:intergenic 45.0%
ATCAAATACGGTCAGTCCGT+TGG - chr1_2:59788881-59788900 Msa0081290:intron 45.0%
ACTCTAGTATGAGGTGGTTG+TGG + chr1_2:59788975-59788994 None:intergenic 45.0%
ATGTATGCATCAATCGTGGG+TGG - chr1_2:59789195-59789214 Msa0081290:intron 45.0%
!! AACTGTGGGAGTACTGATCT+TGG - chr1_2:59789246-59789265 Msa0081290:intron 45.0%
CCTTGCAGCAAAACCATACT+TGG + chr1_2:59789430-59789449 None:intergenic 45.0%
!! CCAAGTATGGTTTTGCTGCA+AGG - chr1_2:59789427-59789446 Msa0081290:intron 45.0%
CCGCGCCATTGAATTTCTAA+AGG + chr1_2:59789505-59789524 None:intergenic 45.0%
ACAGATTGGAGAGCAGAACT+TGG - chr1_2:59789635-59789654 Msa0081290:intron 45.0%
GAGAGCAGAACTTGGCATTT+GGG - chr1_2:59789643-59789662 Msa0081290:intron 45.0%
GAATTGGAGACTCTTCCATC+TGG - chr1_2:59789708-59789727 Msa0081290:intron 45.0%
ATGTCACGCTTCATACCAGA+TGG + chr1_2:59789726-59789745 None:intergenic 45.0%
! ACCATTTCCTATGCTGGTCT+TGG - chr1_2:59790051-59790070 Msa0081290:intron 45.0%
TCCAAGACCAGCATAGGAAA+TGG + chr1_2:59790055-59790074 None:intergenic 45.0%
! GTGTTTTCCAAGACCAGCAT+AGG + chr1_2:59790061-59790080 None:intergenic 45.0%
! GTTTTGCAGACTTTCAGCGA+TGG - chr1_2:59790482-59790501 Msa0081290:CDS 45.0%
TTTCAGCGATGGAAGTTGTG+AGG - chr1_2:59790493-59790512 Msa0081290:CDS 45.0%
CTTCACCCCTTACGGATTTA+AGG + chr1_2:59790634-59790653 None:intergenic 45.0%
TTTCTGAGCTTCACCCCTTA+CGG + chr1_2:59790642-59790661 None:intergenic 45.0%
!! CTTGGGAGATATTTTAGGGG+CGG + chr1_2:59790797-59790816 None:intergenic 45.0%
!! ATATCTCCCAAGTTCTGGAC+TGG - chr1_2:59790805-59790824 Msa0081290:five_prime_UTR 45.0%
AGGGAGTAGGAAAGTTTGCG+TGG + chr1_2:59787570-59787589 None:intergenic 50.0%
GTGATGGTTGAAGAGGGAGT+AGG + chr1_2:59787583-59787602 None:intergenic 50.0%
AGGGGGGTGAGAGAAGAAAA+GGG + chr1_2:59787624-59787643 None:intergenic 50.0%
AAGGGGGGTGAGAGAAGAAA+AGG + chr1_2:59787625-59787644 None:intergenic 50.0%
!! CGGTGTCGTTTAAGGTGGTT+GGG + chr1_2:59787727-59787746 None:intergenic 50.0%
!! TCGGTGTCGTTTAAGGTGGT+TGG + chr1_2:59787728-59787747 None:intergenic 50.0%
! TGGGACTCTATTGGTGACAG+AGG - chr1_2:59787757-59787776 Msa0081290:intron 50.0%
TTCCTCCTCATCCACCAACA+AGG - chr1_2:59788533-59788552 Msa0081290:CDS 50.0%
GGCGTCTATTAGGGTAATGC+AGG + chr1_2:59788932-59788951 None:intergenic 50.0%
GTGGTTGTGGGCGTCTATTA+GGG + chr1_2:59788941-59788960 None:intergenic 50.0%
AGTGGTTGTGGGCGTCTATT+AGG + chr1_2:59788942-59788961 None:intergenic 50.0%
TAATAGACGCCCACAACCAC+TGG - chr1_2:59788941-59788960 Msa0081290:intron 50.0%
CTAGTATGAGGTGGTTGTGG+TGG + chr1_2:59788972-59788991 None:intergenic 50.0%
AAAGCATAGGCGTCCATGAG+TGG - chr1_2:59789069-59789088 Msa0081290:intron 50.0%
TATGCATCAATCGTGGGTGG+TGG - chr1_2:59789198-59789217 Msa0081290:intron 50.0%
GGAGAGCAGAACTTGGCATT+TGG - chr1_2:59789642-59789661 Msa0081290:intron 50.0%
! GGGGATTTTCAGCTCTTCGA+AGG - chr1_2:59789765-59789784 Msa0081290:intron 50.0%
TGGAAGTTGTGAGGACTCTC+CGG - chr1_2:59790502-59790521 Msa0081290:CDS 50.0%
TCTACCCTCTATCAGCCGAA+CGG + chr1_2:59790588-59790607 None:intergenic 50.0%
!! CCGGTGGTGATGGTTGAAGA+GGG + chr1_2:59787589-59787608 None:intergenic 55.0%
CCCTCTTCAACCATCACCAC+CGG - chr1_2:59787586-59787605 Msa0081290:CDS 55.0%
GAAATGGAAGCCGGTGGTGA+TGG + chr1_2:59787599-59787618 None:intergenic 55.0%
GGGGTGAGAGAAGAAAAGGG+TGG + chr1_2:59787621-59787640 None:intergenic 55.0%
! GACCTTGTTGGTGGATGAGG+AGG + chr1_2:59788538-59788557 None:intergenic 55.0%
ATACGGTCAGTCCGTTGGAC+CGG - chr1_2:59788886-59788905 Msa0081290:intron 55.0%
! CTGGTTTGCGCGAGTTTGCA+TGG + chr1_2:59789866-59789885 None:intergenic 55.0%
CGAACGGGCAACCACATCTT+CGG + chr1_2:59790572-59790591 None:intergenic 55.0%
CGAAGATGTGGTTGCCCGTT+CGG - chr1_2:59790570-59790589 Msa0081290:CDS 55.0%
TTGCCCGTTCGGCTGATAGA+GGG - chr1_2:59790581-59790600 Msa0081290:CDS 55.0%
CTACCCTCTATCAGCCGAAC+GGG + chr1_2:59790587-59790606 None:intergenic 55.0%
!! GCCGGTGGTGATGGTTGAAG+AGG + chr1_2:59787590-59787609 None:intergenic 60.0%
AGGGTGGAAATGGAAGCCGG+TGG + chr1_2:59787605-59787624 None:intergenic 60.0%
GACACAACACGGCTCTCACG+AGG - chr1_2:59788337-59788356 Msa0081290:intron 60.0%
GTGGCTACGCCAGTGGTTGT+GGG + chr1_2:59788953-59788972 None:intergenic 60.0%
GTTGCCCGTTCGGCTGATAG+AGG - chr1_2:59790580-59790599 Msa0081290:CDS 60.0%
GGTGGCTACGCCAGTGGTTG+TGG + chr1_2:59788954-59788973 None:intergenic 65.0%
GGTTGTGGTGGCTACGCCAG+TGG + chr1_2:59788960-59788979 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 59787395 59790829 59787395 ID=Msa0081290;Name=Msa0081290
chr1_2 mRNA 59787395 59790829 59787395 ID=Msa0081290-mRNA-1;Parent=Msa0081290;Name=Msa0081290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=153|1|1|1|1|1|3|129|280
chr1_2 exon 59787395 59787733 59787395 ID=Msa0081290-mRNA-1:exon:19457;Parent=Msa0081290-mRNA-1
chr1_2 exon 59788418 59788585 59788418 ID=Msa0081290-mRNA-1:exon:19456;Parent=Msa0081290-mRNA-1
chr1_2 exon 59790212 59790829 59790212 ID=Msa0081290-mRNA-1:exon:19455;Parent=Msa0081290-mRNA-1
chr1_2 five_prime_UTR 59790677 59790829 59790677 ID=Msa0081290-mRNA-1:five_prime_utr;Parent=Msa0081290-mRNA-1
chr1_2 CDS 59790212 59790676 59790212 ID=Msa0081290-mRNA-1:cds;Parent=Msa0081290-mRNA-1
chr1_2 CDS 59788418 59788585 59788418 ID=Msa0081290-mRNA-1:cds;Parent=Msa0081290-mRNA-1
chr1_2 CDS 59787524 59787733 59787524 ID=Msa0081290-mRNA-1:cds;Parent=Msa0081290-mRNA-1
chr1_2 three_prime_UTR 59787395 59787523 59787395 ID=Msa0081290-mRNA-1:three_prime_utr;Parent=Msa0081290-mRNA-1
Gene Sequence

>Msa0081290

ATGCGCGCGATTCCAGTTTCCACGCAAACTTTCCTACTCCCTCTTCAACCATCACCACCGGCTTCCATTTCCACCCTTTTCTTCTCTCACCCCCCTTTTCATTTCACACCCTCACCCAAGTCATGTTCGTTAAACATCAACTTTACTCCTTCTTTGTATCGCGCTTCCAAACACAACCCAACCACCTTAAACGACACCGATGATGATTCTGGGACTCTATTGGTGACAGAGGATGATGAAGTTGAAGATTCAGAGTCGTTGGTTGAAGATGGGGTGTACATAGAAGTCACGAAGCTTGAGAATGAGAAGAATTCACGCAGAATTGAGTCTAGGATTTCTATCGACGCTTCACTTGATTCCATTTGGAATATCTTGACTGATTATGAAAGGTTGGCTGATTTCATTCCTGGTCTTGCCCTCAGTAAATTGATCCAAAAAGGTCCCAATTTTGCTCGACTCTTGCAGATTGGAGAGCAGAACTTGGCATTTGGGTTAAAATTTGATGCTAAAGGAGTTATAGATTGTTTTGAGAAAGAATTGGAGACTCTTCCATCTGGTATGAAGCGTGACATAGACTTCAAGATGATTGAAGGGGATTTTCAGCTCTTCGAAGGAAAATGGTCTATTTTGCAGACTTTCAGCGATGGAAGTTGTGAGGACTCTCCGGTTCGAGAAATTAACACGACTCTTTCATACATTGTTGATGTTAAGCCGAAGATGTGGTTGCCCGTTCGGCTGATAGAGGGTAGACTTTGCAATGAGATAAAAAAGAACCTTAAATCCGTAAGGGGTGAAGCTCAGAAAGCTACTGACAGAACTGTGAATGCAAATCAATTTGAATGA

Protein sequence

>Msa0081290

MRAIPVSTQTFLLPLQPSPPASISTLFFSHPPFHFTPSPKSCSLNINFTPSLYRASKHNPTTLNDTDDDSGTLLVTEDDEVEDSESLVEDGVYIEVTKLENEKNSRRIESRISIDASLDSIWNILTDYERLADFIPGLALSKLIQKGPNFARLLQIGEQNLAFGLKFDAKGVIDCFEKELETLPSGMKRDIDFKMIEGDFQLFEGKWSILQTFSDGSCEDSPVREINTTLSYIVDVKPKMWLPVRLIEGRLCNEIKKNLKSVRGEAQKATDRTVNANQFE*