Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0205050 | XP_013442744.1 | 96.020 | 201 | 8 | 0 | 1 | 201 | 1 | 201 | 1.59e-138 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0205050 | sp|C6TG62|CSPL9_SOYBN | 69.744 | 195 | 58 | 1 | 1 | 195 | 1 | 194 | 6.13e-99 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0205050 | A0A072TGS8 | 96.020 | 201 | 8 | 0 | 1 | 201 | 1 | 201 | 7.60e-139 | 395 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024650 | Msa0205050 | 0.800799 | 1.216762e-48 | -8.615850e-47 |
| Msa0028690 | Msa0205050 | 0.800003 | 1.766869e-48 | -8.615850e-47 |
| Msa0087900 | Msa0205050 | 0.801058 | 1.076954e-48 | -8.615850e-47 |
| Msa0121320 | Msa0205050 | 0.806797 | 6.909500e-50 | -8.615850e-47 |
| Msa0163690 | Msa0205050 | 0.813428 | 2.573028e-51 | -8.615850e-47 |
| Msa0166180 | Msa0205050 | 0.800295 | 1.541507e-48 | -8.615850e-47 |
| Msa0168750 | Msa0205050 | 0.808044 | 3.758189e-50 | -8.615850e-47 |
| Msa0189990 | Msa0205050 | 0.841941 | 3.501612e-58 | -8.615850e-47 |
| Msa0205050 | Msa0240580 | 0.804420 | 2.178797e-49 | -8.615850e-47 |
| Msa0205050 | Msa0247780 | 0.868499 | 6.238151e-66 | -8.615850e-47 |
| Msa0205050 | Msa0248320 | 0.807690 | 4.467921e-50 | -8.615850e-47 |
| Msa0205050 | Msa0303900 | 0.807604 | 4.659941e-50 | -8.615850e-47 |
| Msa0205050 | Msa0307630 | 0.810371 | 1.191631e-50 | -8.615850e-47 |
| Msa0205050 | Msa0325260 | 0.865773 | 4.631652e-65 | -8.615850e-47 |
| Msa0205050 | Msa0333770 | 0.809716 | 1.649172e-50 | -8.615850e-47 |
| Msa0205050 | Msa0354550 | 0.810128 | 1.344306e-50 | -8.615850e-47 |
| Msa0205050 | Msa0358470 | 0.804789 | 1.825354e-49 | -8.615850e-47 |
| Msa0205050 | Msa0418230 | 0.804151 | 2.478870e-49 | -8.615850e-47 |
| Msa0205050 | Msa0429600 | 0.802207 | 6.260146e-49 | -8.615850e-47 |
| Msa0205050 | Msa0464620 | 0.835898 | 1.283174e-56 | -8.615850e-47 |
| Msa0205050 | Msa0491780 | 0.814540 | 1.462979e-51 | -8.615850e-47 |
| Msa0205050 | Msa0501080 | 0.813303 | 2.740385e-51 | -8.615850e-47 |
| Msa0205050 | Msa0510050 | 0.800441 | 1.439176e-48 | -8.615850e-47 |
| Msa0205050 | Msa0531050 | 0.804153 | 2.476881e-49 | -8.615850e-47 |
| Msa0205050 | Msa0532660 | 0.800618 | 1.324398e-48 | -8.615850e-47 |
| Msa0205050 | Msa0566490 | 0.830769 | 2.437412e-55 | -8.615850e-47 |
| Msa0205050 | Msa0567330 | 0.812399 | 4.324044e-51 | -8.615850e-47 |
| Msa0205050 | Msa0567570 | 0.806692 | 7.270570e-50 | -8.615850e-47 |
| Msa0205050 | Msa0576320 | 0.812893 | 3.371445e-51 | -8.615850e-47 |
| Msa0205050 | Msa0588040 | 0.819548 | 1.095916e-52 | -8.615850e-47 |
| Msa0205050 | Msa0606600 | 0.801848 | 7.419904e-49 | -8.615850e-47 |
| Msa0205050 | Msa0628200 | 0.806100 | 9.691460e-50 | -8.615850e-47 |
| Msa0205050 | Msa0647300 | 0.813752 | 2.183561e-51 | -8.615850e-47 |
| Msa0205050 | Msa0658150 | 0.839624 | 1.417203e-57 | -8.615850e-47 |
| Msa0205050 | Msa0686830 | 0.810497 | 1.119196e-50 | -8.615850e-47 |
| Msa0205050 | Msa0703000 | 0.839434 | 1.588517e-57 | -8.615850e-47 |
| Msa0205050 | Msa0773030 | 0.831974 | 1.231205e-55 | -8.615850e-47 |
| Msa0205050 | Msa0775350 | 0.803464 | 3.443711e-49 | -8.615850e-47 |
| Msa0205050 | Msa0792410 | 0.808135 | 3.592835e-50 | -8.615850e-47 |
| Msa0205050 | Msa0794100 | 0.807005 | 6.244274e-50 | -8.615850e-47 |
| Msa0205050 | Msa0810330 | 0.804987 | 1.659243e-49 | -8.615850e-47 |
| Msa0205050 | Msa0831320 | 0.805992 | 1.020973e-49 | -8.615850e-47 |
| Msa0205050 | Msa1006030 | 0.806124 | 9.579517e-50 | -8.615850e-47 |
| Msa0205050 | Msa1082080 | 0.804812 | 1.805075e-49 | -8.615850e-47 |
| Msa0205050 | Msa1087210 | 0.803547 | 3.309926e-49 | -8.615850e-47 |
| Msa0205050 | Msa1146980 | 0.801646 | 8.161356e-49 | -8.615850e-47 |
| Msa0205050 | Msa1211940 | 0.802657 | 5.056143e-49 | -8.615850e-47 |
| Msa0205050 | Msa1223960 | 0.802523 | 5.387390e-49 | -8.615850e-47 |
| Msa0205050 | Msa1263110 | 0.807094 | 5.978736e-50 | -8.615850e-47 |
| Msa0205050 | Msa1269200 | 0.814312 | 1.642909e-51 | -8.615850e-47 |
| Msa0205050 | Msa1284020 | 0.813032 | 3.142653e-51 | -8.615850e-47 |
| Msa0205050 | Msa1319030 | 0.800272 | 1.558214e-48 | -8.615850e-47 |
| Msa0205050 | Msa1322500 | 0.808746 | 2.662242e-50 | -8.615850e-47 |
| Msa0205050 | Msa1376880 | 0.803138 | 4.022360e-49 | -8.615850e-47 |
| Msa0205050 | Msa1384130 | 0.867102 | 1.751879e-65 | -8.615850e-47 |
| Msa0205050 | Msa1395080 | 0.838398 | 2.944206e-57 | -8.615850e-47 |
| Msa0205050 | Msa1407810 | 0.804605 | 1.993523e-49 | -8.615850e-47 |
| Msa0205050 | Msa1437780 | 0.803997 | 2.669193e-49 | -8.615850e-47 |
| Msa0205050 | Msa1458270 | 0.813705 | 2.235398e-51 | -8.615850e-47 |
| Msa0205050 | Msa1462610 | 0.810959 | 8.892309e-51 | -8.615850e-47 |
| Msa0205050 | Msa1464140 | 0.811722 | 6.074341e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0205050 | MtrunA17_Chr2g0303151 | 96.020 | 201 | 8 | 0 | 1 | 201 | 1 | 201 | 1.46e-142 | 395 |
| Msa0205050 | MtrunA17_Chr8g0381001 | 74.227 | 194 | 49 | 1 | 1 | 194 | 1 | 193 | 5.05e-96 | 277 |
| Msa0205050 | MtrunA17_Chr4g0066721 | 36.986 | 146 | 86 | 3 | 29 | 171 | 35 | 177 | 3.63e-22 | 89.4 |
| Msa0205050 | MtrunA17_Chr7g0268681 | 31.609 | 174 | 112 | 3 | 17 | 189 | 18 | 185 | 5.86e-21 | 85.9 |
| Msa0205050 | MtrunA17_Chr4g0021111 | 32.927 | 164 | 94 | 2 | 29 | 192 | 10 | 157 | 7.99e-21 | 84.7 |
| Msa0205050 | MtrunA17_Chr2g0286341 | 28.659 | 164 | 106 | 3 | 31 | 189 | 27 | 184 | 4.36e-15 | 70.5 |
| Msa0205050 | MtrunA17_Chr7g0217691 | 27.957 | 186 | 121 | 3 | 6 | 188 | 10 | 185 | 8.26e-14 | 67.0 |
| Msa0205050 | MtrunA17_Chr4g0042551 | 30.189 | 159 | 96 | 4 | 31 | 185 | 63 | 210 | 4.27e-12 | 62.8 |
| Msa0205050 | MtrunA17_Chr5g0417761 | 30.323 | 155 | 101 | 1 | 31 | 185 | 32 | 179 | 1.34e-11 | 60.8 |
| Msa0205050 | MtrunA17_Chr1g0178161 | 33.562 | 146 | 84 | 4 | 31 | 173 | 42 | 177 | 6.08e-11 | 59.3 |
| Msa0205050 | MtrunA17_Chr2g0321671 | 29.268 | 123 | 71 | 2 | 71 | 185 | 99 | 213 | 6.35e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0205050 | AT5G44550.1 | 58.721 | 172 | 71 | 0 | 23 | 194 | 14 | 185 | 1.92e-66 | 202 |
| Msa0205050 | AT4G20390.1 | 55.882 | 170 | 74 | 1 | 22 | 190 | 12 | 181 | 5.26e-54 | 171 |
| Msa0205050 | AT4G15620.1 | 29.570 | 186 | 124 | 4 | 5 | 189 | 10 | 189 | 2.28e-18 | 79.3 |
| Msa0205050 | AT1G03700.1 | 28.659 | 164 | 101 | 3 | 29 | 192 | 11 | 158 | 8.28e-18 | 77.4 |
| Msa0205050 | AT4G15630.1 | 28.022 | 182 | 125 | 3 | 9 | 189 | 13 | 189 | 1.26e-17 | 77.4 |
| Msa0205050 | AT4G15610.1 | 30.556 | 144 | 93 | 3 | 31 | 172 | 33 | 171 | 5.67e-16 | 73.2 |
| Msa0205050 | AT1G14160.1 | 29.032 | 155 | 103 | 1 | 31 | 185 | 55 | 202 | 6.96e-16 | 73.2 |
| Msa0205050 | AT5G15290.1 | 30.769 | 143 | 90 | 3 | 31 | 172 | 32 | 166 | 3.84e-15 | 70.9 |
| Msa0205050 | AT3G06390.1 | 30.827 | 133 | 84 | 3 | 32 | 161 | 42 | 169 | 8.96e-14 | 67.4 |
| Msa0205050 | AT4G03540.1 | 29.008 | 131 | 77 | 3 | 44 | 174 | 26 | 140 | 4.49e-13 | 64.7 |
Find 42 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGGAGTTTGATTAAATT+TGG | 0.215698 | 2_1:+31294968 | None:intergenic |
| GCAGAAAGAGTAGCAGTTAT+TGG | 0.256041 | 2_1:+31294990 | None:intergenic |
| GCCCTTATTGCTTCTTTCAT+TGG | 0.266507 | 2_1:-31294118 | Msa0205050:CDS |
| AAGTCCTTTGTAATCATATT+GGG | 0.274380 | 2_1:+31294416 | None:intergenic |
| ATGATTGCATTGGATATATT+AGG | 0.293339 | 2_1:-31294441 | Msa0205050:CDS |
| CAGAAAGAGTAGCAGTTATT+GGG | 0.306576 | 2_1:+31294991 | None:intergenic |
| TACAAAATGGCTTCAAGAAA+TGG | 0.318606 | 2_1:-31295185 | None:intergenic |
| GAAGTCCTTTGTAATCATAT+TGG | 0.328703 | 2_1:+31294415 | None:intergenic |
| AGCCAATGAAAGAAGCAATA+AGG | 0.340360 | 2_1:+31294116 | None:intergenic |
| GGTGCCAATAACAAAACTTT+TGG | 0.346894 | 2_1:+31295025 | None:intergenic |
| TTTGAAAGCTATTGCAATAG+AGG | 0.418883 | 2_1:-31294148 | Msa0205050:CDS |
| ATGTCAGCATTGGGAAGAAA+TGG | 0.423404 | 2_1:-31294208 | Msa0205050:CDS |
| TTGAAAACTTACACAAAAGC+TGG | 0.437745 | 2_1:+31294951 | None:intergenic |
| GCCAATGAAAGAAGCAATAA+GGG | 0.438011 | 2_1:+31294117 | None:intergenic |
| ATGCAATCATCACCAAGTTA+TGG | 0.467360 | 2_1:+31294454 | None:intergenic |
| GGAGCATGGTTAATGCGATT+AGG | 0.484616 | 2_1:+31294043 | None:intergenic |
| AGCAACATTCATGTCAGCAT+TGG | 0.488005 | 2_1:-31294218 | Msa0205050:CDS |
| ACTATGGCTCTGGCATCAGC+TGG | 0.494373 | 2_1:-31294250 | Msa0205050:CDS |
| GCGATTAGGCTTGAGAAGCT+TGG | 0.494528 | 2_1:+31294057 | None:intergenic |
| GCAACATTCATGTCAGCATT+GGG | 0.495269 | 2_1:-31294217 | Msa0205050:CDS |
| AAATGCTAGTCTCCATAACT+TGG | 0.496794 | 2_1:-31294466 | Msa0205050:CDS |
| GGTGAAGTTAACTATGGCTC+TGG | 0.500555 | 2_1:-31294260 | Msa0205050:intron |
| TGCAGCTGCAACACTTGTAA+TGG | 0.510923 | 2_1:-31295063 | Msa0205050:CDS |
| ATGTTAATCATATCAAGGAC+TGG | 0.510976 | 2_1:+31294021 | None:intergenic |
| TGGTAATTCACATGCAAGAT+GGG | 0.512674 | 2_1:-31294188 | Msa0205050:CDS |
| ATGGTAATTCACATGCAAGA+TGG | 0.522902 | 2_1:-31294189 | Msa0205050:CDS |
| ATGGAGACTAGCATTTCCAT+TGG | 0.523367 | 2_1:+31294473 | None:intergenic |
| AGGTTCTTTGTGATAGCCAA+TGG | 0.526185 | 2_1:-31294489 | Msa0205050:CDS |
| AGCTATTGCAATAGAGGTGG+TGG | 0.537163 | 2_1:-31294142 | Msa0205050:CDS |
| GCTCTGGCATCAGCTGGAGA+TGG | 0.540036 | 2_1:-31294244 | Msa0205050:CDS |
| TAACTTGGTGATGATTGCAT+TGG | 0.550469 | 2_1:-31294451 | Msa0205050:CDS |
| CATATCAAGGACTGGGAGCA+TGG | 0.559515 | 2_1:+31294029 | None:intergenic |
| TGTTAATCATATCAAGGACT+GGG | 0.560345 | 2_1:+31294022 | None:intergenic |
| AGGCTTGAGAAGCTTGGCAA+TGG | 0.561801 | 2_1:+31294063 | None:intergenic |
| TACAAGTGTTGCAGCTGCAG+TGG | 0.571483 | 2_1:+31295067 | None:intergenic |
| CTAAAATTGCAATAAATGCA+AGG | 0.578209 | 2_1:+31294391 | None:intergenic |
| GAAAGCTATTGCAATAGAGG+TGG | 0.619990 | 2_1:-31294145 | Msa0205050:CDS |
| AGTTATTGGGGTGTTACCAA+CGG | 0.622547 | 2_1:+31295004 | None:intergenic |
| AGTCCTTTGTAATCATATTG+GGG | 0.628572 | 2_1:+31294417 | None:intergenic |
| AGAAAGAGTAGCAGTTATTG+GGG | 0.633112 | 2_1:+31294992 | None:intergenic |
| GGACCCCAATATGATTACAA+AGG | 0.645480 | 2_1:-31294420 | Msa0205050:CDS |
| GGTGAAGAGAAAGTTGAACG+TGG | 0.756724 | 2_1:-31295164 | Msa0205050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATACATTTATATTAACA+TGG | - | chr2_1:31294692-31294711 | Msa0205050:intron | 10.0% |
| !! | TTATACATTTATATTAACAT+GGG | - | chr2_1:31294693-31294712 | Msa0205050:intron | 10.0% |
| !!! | AAGTTTTTTAATTTTTTCTT+AGG | - | chr2_1:31294883-31294902 | Msa0205050:intron | 10.0% |
| !! | TTTATACATTTATATTAACA+TGG | - | chr2_1:31294692-31294711 | Msa0205050:intron | 10.0% |
| !! | TTATACATTTATATTAACAT+GGG | - | chr2_1:31294693-31294712 | Msa0205050:intron | 10.0% |
| !!! | AAGTTTTTTAATTTTTTCTT+AGG | - | chr2_1:31294883-31294902 | Msa0205050:intron | 10.0% |
| !! | TATACATTTATATTAACATG+GGG | - | chr2_1:31294694-31294713 | Msa0205050:intron | 15.0% |
| !! | TATACATTTATATTAACATG+GGG | - | chr2_1:31294694-31294713 | Msa0205050:intron | 15.0% |
| !! | AAAGAAAAACAAAGAATGAT+TGG | - | chr2_1:31294088-31294107 | Msa0205050:CDS | 20.0% |
| !!! | AAACCAAAAAAGTTTTATGT+AGG | - | chr2_1:31294462-31294481 | Msa0205050:CDS | 20.0% |
| !!! | ATTTATTGCAATTTTAGACA+TGG | - | chr2_1:31294827-31294846 | Msa0205050:intron | 20.0% |
| !! | AAAGAAAAACAAAGAATGAT+TGG | - | chr2_1:31294088-31294107 | Msa0205050:CDS | 20.0% |
| !!! | AAACCAAAAAAGTTTTATGT+AGG | - | chr2_1:31294462-31294481 | Msa0205050:CDS | 20.0% |
| !!! | ATTTATTGCAATTTTAGACA+TGG | - | chr2_1:31294827-31294846 | Msa0205050:intron | 20.0% |
| !! | ATTGGATTCTTTTATCTCTT+CGG | - | chr2_1:31294106-31294125 | Msa0205050:CDS | 25.0% |
| ! | AATTTCATCGCTTAATTCAA+AGG | - | chr2_1:31294589-31294608 | Msa0205050:intron | 25.0% |
| ! | ATGATTGCATTGGATATATT+AGG | - | chr2_1:31294771-31294790 | Msa0205050:intron | 25.0% |
| ! | AAGTCCTTTGTAATCATATT+GGG | + | chr2_1:31294799-31294818 | None:intergenic | 25.0% |
| ! | CTAAAATTGCAATAAATGCA+AGG | + | chr2_1:31294824-31294843 | None:intergenic | 25.0% |
| !! | ATTGGATTCTTTTATCTCTT+CGG | - | chr2_1:31294106-31294125 | Msa0205050:CDS | 25.0% |
| ! | AATTTCATCGCTTAATTCAA+AGG | - | chr2_1:31294589-31294608 | Msa0205050:intron | 25.0% |
| ! | ATGATTGCATTGGATATATT+AGG | - | chr2_1:31294771-31294790 | Msa0205050:intron | 25.0% |
| ! | AAGTCCTTTGTAATCATATT+GGG | + | chr2_1:31294799-31294818 | None:intergenic | 25.0% |
| ! | CTAAAATTGCAATAAATGCA+AGG | + | chr2_1:31294824-31294843 | None:intergenic | 25.0% |
| ! | TTGGATTCTTTTATCTCTTC+GGG | - | chr2_1:31294107-31294126 | Msa0205050:CDS | 30.0% |
| !!! | CAGACCAAAAGTTTTGTTAT+TGG | - | chr2_1:31294183-31294202 | Msa0205050:CDS | 30.0% |
| AGCTGGAGTTTGATTAAATT+TGG | + | chr2_1:31294247-31294266 | None:intergenic | 30.0% | |
| TTGAAAACTTACACAAAAGC+TGG | + | chr2_1:31294264-31294283 | None:intergenic | 30.0% | |
| !!! | CCTCCTACATAAAACTTTTT+TGG | + | chr2_1:31294468-31294487 | None:intergenic | 30.0% |
| !! | CCAAAAAAGTTTTATGTAGG+AGG | - | chr2_1:31294465-31294484 | Msa0205050:CDS | 30.0% |
| ACGATTGAGAAAATAGAGAA+AGG | - | chr2_1:31294545-31294564 | Msa0205050:intron | 30.0% | |
| AGTCCTTTGTAATCATATTG+GGG | + | chr2_1:31294798-31294817 | None:intergenic | 30.0% | |
| GAAGTCCTTTGTAATCATAT+TGG | + | chr2_1:31294800-31294819 | None:intergenic | 30.0% | |
| !!! | TTTTTGGGTGAAGTTAACTA+TGG | - | chr2_1:31294946-31294965 | Msa0205050:intron | 30.0% |
| TTTGAAAGCTATTGCAATAG+AGG | - | chr2_1:31295064-31295083 | Msa0205050:CDS | 30.0% | |
| ! | TTGGATTCTTTTATCTCTTC+GGG | - | chr2_1:31294107-31294126 | Msa0205050:CDS | 30.0% |
| !!! | CAGACCAAAAGTTTTGTTAT+TGG | - | chr2_1:31294183-31294202 | Msa0205050:CDS | 30.0% |
| AGCTGGAGTTTGATTAAATT+TGG | + | chr2_1:31294247-31294266 | None:intergenic | 30.0% | |
| TTGAAAACTTACACAAAAGC+TGG | + | chr2_1:31294264-31294283 | None:intergenic | 30.0% | |
| !!! | CCTCCTACATAAAACTTTTT+TGG | + | chr2_1:31294468-31294487 | None:intergenic | 30.0% |
| !! | CCAAAAAAGTTTTATGTAGG+AGG | - | chr2_1:31294465-31294484 | Msa0205050:CDS | 30.0% |
| ACGATTGAGAAAATAGAGAA+AGG | - | chr2_1:31294545-31294564 | Msa0205050:intron | 30.0% | |
| AGTCCTTTGTAATCATATTG+GGG | + | chr2_1:31294798-31294817 | None:intergenic | 30.0% | |
| GAAGTCCTTTGTAATCATAT+TGG | + | chr2_1:31294800-31294819 | None:intergenic | 30.0% | |
| !!! | TTTTTGGGTGAAGTTAACTA+TGG | - | chr2_1:31294946-31294965 | Msa0205050:intron | 30.0% |
| TTTGAAAGCTATTGCAATAG+AGG | - | chr2_1:31295064-31295083 | Msa0205050:CDS | 30.0% | |
| ! | GGTGCCAATAACAAAACTTT+TGG | + | chr2_1:31294190-31294209 | None:intergenic | 35.0% |
| AGAAAGAGTAGCAGTTATTG+GGG | + | chr2_1:31294223-31294242 | None:intergenic | 35.0% | |
| CAGAAAGAGTAGCAGTTATT+GGG | + | chr2_1:31294224-31294243 | None:intergenic | 35.0% | |
| ATACCATTGTACTACTCGTT+CGG | + | chr2_1:31294434-31294453 | None:intergenic | 35.0% | |
| TAGTAGAAGAGGTCGAATAT+CGG | + | chr2_1:31294492-31294511 | None:intergenic | 35.0% | |
| !! | TCGTAGTGGTTAATTTGTCA+GGG | + | chr2_1:31294529-31294548 | None:intergenic | 35.0% |
| !! | ATCGTAGTGGTTAATTTGTC+AGG | + | chr2_1:31294530-31294549 | None:intergenic | 35.0% |
| ! | CTCTATTTTCTCAATCGTAG+TGG | + | chr2_1:31294543-31294562 | None:intergenic | 35.0% |
| ATATTAACATGGGGTGATAC+AGG | - | chr2_1:31294703-31294722 | Msa0205050:intron | 35.0% | |
| ! | AAATGCTAGTCTCCATAACT+TGG | - | chr2_1:31294746-31294765 | Msa0205050:intron | 35.0% |
| ATGCAATCATCACCAAGTTA+TGG | + | chr2_1:31294761-31294780 | None:intergenic | 35.0% | |
| !! | TAACTTGGTGATGATTGCAT+TGG | - | chr2_1:31294761-31294780 | Msa0205050:intron | 35.0% |
| ATGGTAATTCACATGCAAGA+TGG | - | chr2_1:31295023-31295042 | Msa0205050:CDS | 35.0% | |
| TGGTAATTCACATGCAAGAT+GGG | - | chr2_1:31295024-31295043 | Msa0205050:CDS | 35.0% | |
| GCCAATGAAAGAAGCAATAA+GGG | + | chr2_1:31295098-31295117 | None:intergenic | 35.0% | |
| AGCCAATGAAAGAAGCAATA+AGG | + | chr2_1:31295099-31295118 | None:intergenic | 35.0% | |
| ! | GGTGCCAATAACAAAACTTT+TGG | + | chr2_1:31294190-31294209 | None:intergenic | 35.0% |
| AGAAAGAGTAGCAGTTATTG+GGG | + | chr2_1:31294223-31294242 | None:intergenic | 35.0% | |
| CAGAAAGAGTAGCAGTTATT+GGG | + | chr2_1:31294224-31294243 | None:intergenic | 35.0% | |
| ATACCATTGTACTACTCGTT+CGG | + | chr2_1:31294434-31294453 | None:intergenic | 35.0% | |
| TAGTAGAAGAGGTCGAATAT+CGG | + | chr2_1:31294492-31294511 | None:intergenic | 35.0% | |
| !! | TCGTAGTGGTTAATTTGTCA+GGG | + | chr2_1:31294529-31294548 | None:intergenic | 35.0% |
| !! | ATCGTAGTGGTTAATTTGTC+AGG | + | chr2_1:31294530-31294549 | None:intergenic | 35.0% |
| ! | CTCTATTTTCTCAATCGTAG+TGG | + | chr2_1:31294543-31294562 | None:intergenic | 35.0% |
| ATATTAACATGGGGTGATAC+AGG | - | chr2_1:31294703-31294722 | Msa0205050:intron | 35.0% | |
| ! | AAATGCTAGTCTCCATAACT+TGG | - | chr2_1:31294746-31294765 | Msa0205050:intron | 35.0% |
| ATGCAATCATCACCAAGTTA+TGG | + | chr2_1:31294761-31294780 | None:intergenic | 35.0% | |
| !! | TAACTTGGTGATGATTGCAT+TGG | - | chr2_1:31294761-31294780 | Msa0205050:intron | 35.0% |
| ATGGTAATTCACATGCAAGA+TGG | - | chr2_1:31295023-31295042 | Msa0205050:CDS | 35.0% | |
| TGGTAATTCACATGCAAGAT+GGG | - | chr2_1:31295024-31295043 | Msa0205050:CDS | 35.0% | |
| GCCAATGAAAGAAGCAATAA+GGG | + | chr2_1:31295098-31295117 | None:intergenic | 35.0% | |
| AGCCAATGAAAGAAGCAATA+AGG | + | chr2_1:31295099-31295118 | None:intergenic | 35.0% | |
| ! | GATTCTTTTATCTCTTCGGG+TGG | - | chr2_1:31294110-31294129 | Msa0205050:CDS | 40.0% |
| !!! | AGTTTTGTTATTGGCACCGT+TGG | - | chr2_1:31294192-31294211 | Msa0205050:CDS | 40.0% |
| ! | AGTTATTGGGGTGTTACCAA+CGG | + | chr2_1:31294211-31294230 | None:intergenic | 40.0% |
| GCAGAAAGAGTAGCAGTTAT+TGG | + | chr2_1:31294225-31294244 | None:intergenic | 40.0% | |
| TACCATTGTACTACTCGTTC+GGG | + | chr2_1:31294433-31294452 | None:intergenic | 40.0% | |
| GAGGGAAATGTTAGTAGAAG+AGG | + | chr2_1:31294503-31294522 | None:intergenic | 40.0% | |
| !! | GTTAATTTGTCAGGGAGAGA+GGG | + | chr2_1:31294521-31294540 | None:intergenic | 40.0% |
| AGGTTCTTTGTGATAGCCAA+TGG | - | chr2_1:31294723-31294742 | Msa0205050:intron | 40.0% | |
| ATGGAGACTAGCATTTCCAT+TGG | + | chr2_1:31294742-31294761 | None:intergenic | 40.0% | |
| GGACCCCAATATGATTACAA+AGG | - | chr2_1:31294792-31294811 | Msa0205050:intron | 40.0% | |
| AGCAACATTCATGTCAGCAT+TGG | - | chr2_1:31294994-31295013 | Msa0205050:CDS | 40.0% | |
| GCAACATTCATGTCAGCATT+GGG | - | chr2_1:31294995-31295014 | Msa0205050:CDS | 40.0% | |
| ! | ATGTCAGCATTGGGAAGAAA+TGG | - | chr2_1:31295004-31295023 | Msa0205050:CDS | 40.0% |
| GAAAGCTATTGCAATAGAGG+TGG | - | chr2_1:31295067-31295086 | Msa0205050:CDS | 40.0% | |
| GCCCTTATTGCTTCTTTCAT+TGG | - | chr2_1:31295094-31295113 | Msa0205050:CDS | 40.0% | |
| ! | GATTCTTTTATCTCTTCGGG+TGG | - | chr2_1:31294110-31294129 | Msa0205050:CDS | 40.0% |
| !!! | AGTTTTGTTATTGGCACCGT+TGG | - | chr2_1:31294192-31294211 | Msa0205050:CDS | 40.0% |
| ! | AGTTATTGGGGTGTTACCAA+CGG | + | chr2_1:31294211-31294230 | None:intergenic | 40.0% |
| GCAGAAAGAGTAGCAGTTAT+TGG | + | chr2_1:31294225-31294244 | None:intergenic | 40.0% | |
| TACCATTGTACTACTCGTTC+GGG | + | chr2_1:31294433-31294452 | None:intergenic | 40.0% | |
| GAGGGAAATGTTAGTAGAAG+AGG | + | chr2_1:31294503-31294522 | None:intergenic | 40.0% | |
| !! | GTTAATTTGTCAGGGAGAGA+GGG | + | chr2_1:31294521-31294540 | None:intergenic | 40.0% |
| AGGTTCTTTGTGATAGCCAA+TGG | - | chr2_1:31294723-31294742 | Msa0205050:intron | 40.0% | |
| ATGGAGACTAGCATTTCCAT+TGG | + | chr2_1:31294742-31294761 | None:intergenic | 40.0% | |
| GGACCCCAATATGATTACAA+AGG | - | chr2_1:31294792-31294811 | Msa0205050:intron | 40.0% | |
| AGCAACATTCATGTCAGCAT+TGG | - | chr2_1:31294994-31295013 | Msa0205050:CDS | 40.0% | |
| GCAACATTCATGTCAGCATT+GGG | - | chr2_1:31294995-31295014 | Msa0205050:CDS | 40.0% | |
| ! | ATGTCAGCATTGGGAAGAAA+TGG | - | chr2_1:31295004-31295023 | Msa0205050:CDS | 40.0% |
| GAAAGCTATTGCAATAGAGG+TGG | - | chr2_1:31295067-31295086 | Msa0205050:CDS | 40.0% | |
| GCCCTTATTGCTTCTTTCAT+TGG | - | chr2_1:31295094-31295113 | Msa0205050:CDS | 40.0% | |
| GGTGAAGAGAAAGTTGAACG+TGG | - | chr2_1:31294048-31294067 | Msa0205050:CDS | 45.0% | |
| TGCAGCTGCAACACTTGTAA+TGG | - | chr2_1:31294149-31294168 | Msa0205050:CDS | 45.0% | |
| ACCATTGTACTACTCGTTCG+GGG | + | chr2_1:31294432-31294451 | None:intergenic | 45.0% | |
| !! | GGTTAATTTGTCAGGGAGAG+AGG | + | chr2_1:31294522-31294541 | None:intergenic | 45.0% |
| GGTGAAGTTAACTATGGCTC+TGG | - | chr2_1:31294952-31294971 | Msa0205050:intron | 45.0% | |
| AGCTATTGCAATAGAGGTGG+TGG | - | chr2_1:31295070-31295089 | Msa0205050:CDS | 45.0% | |
| GGAGCATGGTTAATGCGATT+AGG | + | chr2_1:31295172-31295191 | None:intergenic | 45.0% | |
| GGTGAAGAGAAAGTTGAACG+TGG | - | chr2_1:31294048-31294067 | Msa0205050:CDS | 45.0% | |
| TGCAGCTGCAACACTTGTAA+TGG | - | chr2_1:31294149-31294168 | Msa0205050:CDS | 45.0% | |
| ACCATTGTACTACTCGTTCG+GGG | + | chr2_1:31294432-31294451 | None:intergenic | 45.0% | |
| !! | GGTTAATTTGTCAGGGAGAG+AGG | + | chr2_1:31294522-31294541 | None:intergenic | 45.0% |
| GGTGAAGTTAACTATGGCTC+TGG | - | chr2_1:31294952-31294971 | Msa0205050:intron | 45.0% | |
| AGCTATTGCAATAGAGGTGG+TGG | - | chr2_1:31295070-31295089 | Msa0205050:CDS | 45.0% | |
| GGAGCATGGTTAATGCGATT+AGG | + | chr2_1:31295172-31295191 | None:intergenic | 45.0% | |
| !! | ATCTATAATAAAATTAAAAT+AGG | + | chr2_1:31294671-31294690 | None:intergenic | 5.0% |
| !!! | ATTGATAAATAATATTTTTT+TGG | - | chr2_1:31294930-31294949 | Msa0205050:intron | 5.0% |
| !!! | TTGATAAATAATATTTTTTT+GGG | - | chr2_1:31294931-31294950 | Msa0205050:intron | 5.0% |
| !! | ATCTATAATAAAATTAAAAT+AGG | + | chr2_1:31294671-31294690 | None:intergenic | 5.0% |
| !!! | ATTGATAAATAATATTTTTT+TGG | - | chr2_1:31294930-31294949 | Msa0205050:intron | 5.0% |
| !!! | TTGATAAATAATATTTTTTT+GGG | - | chr2_1:31294931-31294950 | Msa0205050:intron | 5.0% |
| ! | TACAAGTGTTGCAGCTGCAG+TGG | + | chr2_1:31294148-31294167 | None:intergenic | 50.0% |
| TCCCCGAACGAGTAGTACAA+TGG | - | chr2_1:31294428-31294447 | Msa0205050:CDS | 50.0% | |
| AGGCTTGAGAAGCTTGGCAA+TGG | + | chr2_1:31295152-31295171 | None:intergenic | 50.0% | |
| GCGATTAGGCTTGAGAAGCT+TGG | + | chr2_1:31295158-31295177 | None:intergenic | 50.0% | |
| ! | TACAAGTGTTGCAGCTGCAG+TGG | + | chr2_1:31294148-31294167 | None:intergenic | 50.0% |
| TCCCCGAACGAGTAGTACAA+TGG | - | chr2_1:31294428-31294447 | Msa0205050:CDS | 50.0% | |
| AGGCTTGAGAAGCTTGGCAA+TGG | + | chr2_1:31295152-31295171 | None:intergenic | 50.0% | |
| GCGATTAGGCTTGAGAAGCT+TGG | + | chr2_1:31295158-31295177 | None:intergenic | 50.0% | |
| !! | ACTATGGCTCTGGCATCAGC+TGG | - | chr2_1:31294962-31294981 | Msa0205050:intron | 55.0% |
| !! | ACTATGGCTCTGGCATCAGC+TGG | - | chr2_1:31294962-31294981 | Msa0205050:intron | 55.0% |
| GCTCTGGCATCAGCTGGAGA+TGG | - | chr2_1:31294968-31294987 | Msa0205050:CDS | 60.0% | |
| GCTCTGGCATCAGCTGGAGA+TGG | - | chr2_1:31294968-31294987 | Msa0205050:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 31294033 | 31295201 | 31294033 | ID=Msa0205050;Name=Msa0205050 |
| chr2_1 | mRNA | 31294033 | 31295201 | 31294033 | ID=Msa0205050-mRNA-1;Parent=Msa0205050;Name=Msa0205050-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|201 |
| chr2_1 | exon | 31294963 | 31295201 | 31294963 | ID=Msa0205050-mRNA-1:exon:11042;Parent=Msa0205050-mRNA-1 |
| chr2_1 | exon | 31294386 | 31294509 | 31294386 | ID=Msa0205050-mRNA-1:exon:11041;Parent=Msa0205050-mRNA-1 |
| chr2_1 | exon | 31294033 | 31294275 | 31294033 | ID=Msa0205050-mRNA-1:exon:11040;Parent=Msa0205050-mRNA-1 |
| chr2_1 | CDS | 31294963 | 31295201 | 31294963 | ID=Msa0205050-mRNA-1:cds;Parent=Msa0205050-mRNA-1 |
| chr2_1 | CDS | 31294386 | 31294509 | 31294386 | ID=Msa0205050-mRNA-1:cds;Parent=Msa0205050-mRNA-1 |
| chr2_1 | CDS | 31294033 | 31294275 | 31294033 | ID=Msa0205050-mRNA-1:cds;Parent=Msa0205050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
