AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0429600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0429600 MtrunA17_Chr3g0133341 97.887 568 12 0 1 568 1 568 0.0 1151
Msa0429600 MtrunA17_Chr1g0193391 49.470 566 253 8 10 559 11 559 0.0 564
Msa0429600 MtrunA17_Chr7g0271221 50.181 552 249 6 14 556 17 551 0.0 547
Msa0429600 MtrunA17_Chr2g0284701 47.935 557 266 8 16 550 34 588 0.0 531
Msa0429600 MtrunA17_Chr4g0069581 49.432 528 244 4 32 550 4 517 1.84e-173 503
Msa0429600 MtrunA17_Chr8g0379971 44.541 577 277 9 13 550 19 591 1.82e-164 481
Msa0429600 MtrunA17_Chr8g0379991 44.876 566 260 7 35 550 1 564 5.04e-154 453
Msa0429600 MtrunA17_Chr5g0415961 41.103 562 301 7 10 550 20 572 8.03e-151 445
Msa0429600 MtrunA17_Chr8g0362711 41.404 570 299 7 10 556 20 577 1.51e-146 434
Msa0429600 MtrunA17_Chr2g0276751 40.942 552 293 8 10 550 34 563 6.47e-145 431
Msa0429600 MtrunA17_Chr5g0422881 39.539 564 323 6 14 564 20 578 1.66e-140 419
Msa0429600 MtrunA17_Chr8g0375311 37.545 554 326 5 10 550 36 582 2.24e-131 395
Msa0429600 MtrunA17_Chr4g0005901 39.029 556 316 8 10 552 28 573 1.29e-128 388
Msa0429600 MtrunA17_Chr8g0375291 38.321 548 318 5 10 544 36 576 1.64e-128 388
Msa0429600 MtrunA17_Chr5g0399061 36.814 565 331 9 11 559 24 578 3.39e-128 387
Msa0429600 MtrunA17_Chr7g0261811 38.686 548 324 6 10 549 23 566 7.81e-128 387
Msa0429600 MtrunA17_Chr7g0261881 38.251 549 327 6 10 550 23 567 8.12e-127 384
Msa0429600 MtrunA17_Chr7g0241741 38.530 558 316 10 10 552 18 563 1.18e-126 383
Msa0429600 MtrunA17_Chr8g0375341 37.276 558 328 6 10 553 36 585 3.11e-126 382
Msa0429600 MtrunA17_Chr7g0261791 36.984 557 340 6 10 558 25 578 5.07e-126 382
Msa0429600 MtrunA17_Chr3g0142101 36.861 567 329 11 14 567 35 585 2.15e-125 380
Msa0429600 MtrunA17_Chr5g0399071 37.589 564 330 7 10 559 21 576 5.97e-125 379
Msa0429600 MtrunA17_Chr8g0375351 36.804 557 332 5 10 553 36 585 7.69e-124 376
Msa0429600 MtrunA17_Chr8g0375321 37.004 554 331 5 10 551 33 580 1.36e-122 373
Msa0429600 MtrunA17_Chr4g0056431 37.986 566 328 8 10 559 21 579 8.24e-121 369
Msa0429600 MtrunA17_Chr1g0187241 35.624 553 344 4 6 550 18 566 1.01e-120 369
Msa0429600 MtrunA17_Chr3g0142091 36.590 563 332 9 14 564 26 575 1.26e-120 368
Msa0429600 MtrunA17_Chr7g0255621 35.602 573 350 7 6 564 12 579 1.56e-120 368
Msa0429600 MtrunA17_Chr3g0104011 35.676 555 334 8 10 550 18 563 2.08e-119 364
Msa0429600 MtrunA17_Chr7g0261771 36.131 548 340 5 10 550 27 571 3.29e-119 365
Msa0429600 MtrunA17_Chr7g0261851 36.918 558 342 5 6 556 20 574 3.18e-118 362
Msa0429600 MtrunA17_Chr8g0375331 36.643 554 331 5 10 550 20 566 5.19e-118 361
Msa0429600 MtrunA17_Chr8g0375361 36.347 553 328 6 13 550 38 581 1.60e-117 360
Msa0429600 MtrunA17_Chr7g0214731 36.252 571 340 11 16 568 63 627 3.33e-116 358
Msa0429600 MtrunA17_Chr7g0255611 35.192 574 347 10 9 564 26 592 5.78e-116 356
Msa0429600 MtrunA17_Chr4g0063591 37.702 557 314 9 11 550 19 559 1.64e-114 352
Msa0429600 MtrunA17_Chr7g0255601 35.519 549 335 7 16 550 29 572 1.98e-112 348
Msa0429600 MtrunA17_Chr1g0166711 35.766 548 341 5 10 550 21 564 1.83e-111 345
Msa0429600 MtrunA17_Chr1g0166791 32.605 549 358 5 10 550 20 564 8.10e-110 340
Msa0429600 MtrunA17_Chr7g0240381 35.357 560 333 9 6 553 19 561 1.43e-108 337
Msa0429600 MtrunA17_Chr7g0261661 40.749 454 257 6 104 549 3 452 1.45e-108 334
Msa0429600 MtrunA17_Chr3g0114501 36.823 554 327 9 10 550 18 561 1.51e-108 337
Msa0429600 MtrunA17_Chr4g0008651 34.234 555 344 8 18 562 38 581 1.52e-105 329
Msa0429600 MtrunA17_Chr3g0112611 34.426 549 339 7 18 555 36 574 1.13e-102 322
Msa0429600 MtrunA17_Chr8g0353031 35.053 562 313 10 16 553 20 553 3.18e-102 320
Msa0429600 MtrunA17_Chr5g0439381 34.103 563 346 7 10 564 24 569 6.03e-102 320
Msa0429600 MtrunA17_Chr1g0166771 34.816 517 315 8 27 533 3 507 7.85e-102 318
Msa0429600 MtrunA17_Chr5g0415791 35.125 558 340 8 14 554 29 581 4.72e-101 318
Msa0429600 MtrunA17_Chr3g0112671 33.757 551 334 8 22 562 41 570 7.73e-101 317
Msa0429600 MtrunA17_Chr4g0014871 33.635 553 330 10 10 550 26 553 2.15e-100 315
Msa0429600 MtrunA17_Chr1g0166741 33.586 527 331 6 13 531 26 541 4.31e-100 315
Msa0429600 MtrunA17_Chr7g0217461 32.230 574 362 7 10 564 20 585 9.55e-98 309
Msa0429600 MtrunA17_Chr4g0014801 34.601 552 325 10 10 550 25 551 2.91e-97 306
Msa0429600 MtrunA17_Chr1g0166731 36.543 457 279 5 101 550 9 461 4.66e-96 301
Msa0429600 MtrunA17_Chr4g0054891 31.634 569 360 8 10 562 106 661 7.84e-96 306
Msa0429600 MtrunA17_Chr4g0014791 34.182 550 328 10 10 550 25 549 1.60e-95 302
Msa0429600 MtrunA17_Chr4g0014781 32.909 550 337 8 10 550 25 551 5.91e-95 301
Msa0429600 MtrunA17_Chr5g0400371 30.071 562 371 7 10 555 108 663 1.72e-94 303
Msa0429600 MtrunA17_Chr3g0077151 33.996 553 320 9 10 550 24 543 3.45e-94 298
Msa0429600 MtrunA17_Chr1g0213711 30.404 569 365 11 14 566 21 574 1.01e-93 298
Msa0429600 MtrunA17_Chr4g0014841 33.091 550 334 10 10 550 25 549 1.03e-92 295
Msa0429600 MtrunA17_Chr4g0011471 32.844 545 333 8 24 548 26 557 3.53e-91 291
Msa0429600 MtrunA17_Chr7g0218851 30.672 551 354 11 13 548 45 582 4.16e-91 292
Msa0429600 MtrunA17_Chr7g0261751 34.958 472 267 4 10 443 27 496 6.26e-91 289
Msa0429600 MtrunA17_Chr4g0059991 30.957 575 348 13 12 554 20 577 1.30e-90 290
Msa0429600 MtrunA17_Chr4g0059971 31.041 567 351 8 10 550 32 584 6.22e-89 286
Msa0429600 MtrunA17_Chr7g0214461 29.982 547 357 10 15 548 79 612 8.64e-88 284
Msa0429600 MtrunA17_Chr3g0082631 35.682 440 259 7 140 559 30 465 1.11e-87 279
Msa0429600 MtrunA17_Chr4g0011041 29.875 559 361 8 10 548 32 579 1.75e-87 282
Msa0429600 MtrunA17_Chr4g0060071 51.210 248 116 1 309 551 52 299 5.84e-87 271
Msa0429600 MtrunA17_Chr4g0059981 30.517 580 360 13 11 563 30 593 1.34e-85 278
Msa0429600 MtrunA17_Chr1g0147631 32.860 563 343 12 14 556 25 572 6.46e-83 270
Msa0429600 MtrunA17_Chr4g0014861 34.824 425 259 7 136 550 12 428 8.42e-83 265
Msa0429600 MtrunA17_Chr2g0331521 30.590 559 358 13 14 553 22 569 1.03e-81 267
Msa0429600 MtrunA17_Chr2g0331481 31.349 571 357 12 5 554 16 572 2.29e-81 267
Msa0429600 MtrunA17_Chr4g0060001 31.588 554 344 11 15 547 30 569 3.74e-81 266
Msa0429600 MtrunA17_Chr4g0003761 30.915 579 364 15 9 566 26 589 4.42e-81 265
Msa0429600 MtrunA17_Chr8g0390331 30.357 560 359 11 12 554 13 558 5.67e-81 265
Msa0429600 MtrunA17_Chr2g0331511 31.944 576 358 15 7 562 16 577 7.67e-81 266
Msa0429600 MtrunA17_Chr7g0240271 28.727 550 364 8 14 544 24 564 2.49e-80 263
Msa0429600 MtrunA17_Chr8g0362781 28.371 571 380 8 7 555 23 586 8.01e-80 262
Msa0429600 MtrunA17_Chr2g0331471 31.634 569 352 15 7 554 83 635 2.29e-78 261
Msa0429600 MtrunA17_Chr7g0240281 29.730 555 360 10 14 547 24 569 1.13e-76 254
Msa0429600 MtrunA17_Chr8g0362801 32.409 469 295 10 113 565 12 474 9.41e-76 248
Msa0429600 MtrunA17_Chr7g0234151 34.735 452 254 10 101 547 3 418 2.02e-73 240
Msa0429600 MtrunA17_Chr7g0234381 34.513 452 255 9 101 547 3 418 6.00e-73 239
Msa0429600 MtrunA17_Chr1g0177591 30.877 570 346 14 2 554 32 570 6.01e-72 241
Msa0429600 MtrunA17_Chr7g0234181 33.259 448 260 7 104 547 1 413 1.29e-70 233
Msa0429600 MtrunA17_Chr7g0261731 36.061 330 208 2 10 338 27 354 1.31e-70 231
Msa0429600 MtrunA17_Chr7g0235521 30.065 459 293 8 105 544 4 453 9.20e-69 229
Msa0429600 MtrunA17_Chr1g0157611 29.189 555 360 13 12 547 14 554 2.33e-68 231
Msa0429600 MtrunA17_Chr7g0240211 30.065 459 293 8 105 544 4 453 4.38e-68 228
Msa0429600 MtrunA17_Chr7g0240181 30.065 459 293 8 105 544 4 453 5.29e-68 228
Msa0429600 MtrunA17_Chr7g0240131 29.847 459 294 8 105 544 4 453 1.09e-67 227
Msa0429600 MtrunA17_Chr1g0157601 28.678 537 354 11 18 537 19 543 1.69e-67 229
Msa0429600 MtrunA17_Chr2g0331461 30.427 562 358 12 5 546 16 564 1.89e-66 228
Msa0429600 MtrunA17_Chr2g0326211 28.214 560 351 15 14 552 20 549 3.05e-66 225
Msa0429600 MtrunA17_Chr2g0325951 27.957 558 354 14 17 552 18 549 3.87e-66 224
Msa0429600 MtrunA17_Chr2g0325961 28.417 556 355 13 17 552 18 550 1.49e-65 223
Msa0429600 MtrunA17_Chr7g0240151 30.044 456 279 8 105 544 4 435 1.84e-65 220
Msa0429600 MtrunA17_Chr5g0415841 29.274 468 310 7 104 554 3 466 1.05e-64 219
Msa0429600 MtrunA17_Chr1g0157621 29.691 485 311 14 74 541 40 511 4.31e-61 211
Msa0429600 MtrunA17_Chr3g0142121 38.869 283 154 7 292 564 11 284 3.51e-58 196
Msa0429600 MtrunA17_Chr1g0177611 31.767 447 266 12 131 554 11 441 7.94e-58 199
Msa0429600 MtrunA17_Chr3g0142111 36.111 288 174 4 14 298 46 326 5.93e-55 189
Msa0429600 MtrunA17_Chr1g0177631 31.544 447 267 12 131 554 11 441 1.26e-54 191
Msa0429600 MtrunA17_Chr6g0451841 26.678 566 356 15 15 554 8 540 1.58e-54 193
Msa0429600 MtrunA17_Chr3g0112631 36.678 289 165 8 291 567 3 285 4.14e-50 174
Msa0429600 MtrunA17_Chr7g0261721 37.441 211 124 3 358 561 5 214 3.63e-36 135
Msa0429600 MtrunA17_Chr4g0060061 44.715 123 68 0 128 250 6 128 6.07e-33 122
Msa0429600 MtrunA17_Chr7g0261831 43.333 150 80 3 247 392 1 149 6.48e-31 119
Msa0429600 MtrunA17_Chr3g0112651 34.731 167 108 1 126 292 38 203 3.59e-27 109
Msa0429600 MtrunA17_Chr1g0147591 30.693 202 123 3 143 332 5 201 3.13e-24 100
Msa0429600 MtrunA17_Chr2g0326221 29.333 225 133 6 329 552 26 225 5.56e-23 97.8
Msa0429600 MtrunA17_Chr4g0060051 40.217 92 55 0 9 100 17 108 4.56e-17 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0429600 AT1G27040.1 45.304 543 279 7 16 549 27 560 2.20e-157 462
Msa0429600 AT1G27040.2 45.304 543 279 7 16 549 23 556 3.36e-157 461
Msa0429600 AT1G27040.3 45.009 531 274 7 28 549 7 528 5.25e-154 452
Msa0429600 AT1G69850.1 42.807 570 292 5 13 555 22 584 3.33e-153 452
Msa0429600 AT1G59740.1 40.619 549 304 6 10 546 35 573 9.74e-141 420
Msa0429600 AT1G33440.1 40.345 580 314 9 3 567 25 587 7.79e-137 410
Msa0429600 AT5G62730.1 39.318 557 305 6 9 551 49 586 2.35e-132 399
Msa0429600 AT1G68570.1 40.107 561 315 6 12 556 19 574 3.02e-130 394
Msa0429600 AT5G62730.2 39.522 544 296 6 22 551 3 527 8.03e-130 390
Msa0429600 AT1G68570.2 40.367 545 304 6 28 556 5 544 7.73e-128 386
Msa0429600 AT5G01180.2 38.739 555 316 9 10 550 19 563 1.06e-126 384
Msa0429600 AT5G01180.3 38.739 555 316 9 10 550 19 563 1.06e-126 384
Msa0429600 AT5G01180.1 38.739 555 316 9 10 550 19 563 1.06e-126 384
Msa0429600 AT2G02040.1 37.545 554 326 5 10 550 35 581 1.48e-126 384
Msa0429600 AT3G54140.1 36.937 555 327 8 10 550 18 563 3.17e-123 374
Msa0429600 AT3G54140.2 36.937 555 327 8 10 550 18 563 3.17e-123 374
Msa0429600 AT1G62200.1 37.097 558 323 8 10 552 46 590 5.78e-122 372
Msa0429600 AT3G25280.1 38.547 537 289 10 16 547 21 521 3.28e-121 368
Msa0429600 AT2G26690.1 38.324 561 314 8 10 554 18 562 6.06e-121 369
Msa0429600 AT2G26690.2 38.858 543 300 8 28 554 3 529 8.55e-119 362
Msa0429600 AT3G25260.1 39.147 539 289 12 10 547 15 515 1.40e-118 361
Msa0429600 AT1G12110.1 36.444 568 340 7 10 562 21 582 5.83e-118 362
Msa0429600 AT1G62200.2 35.495 586 323 8 10 552 46 619 9.87e-118 362
Msa0429600 AT2G26690.3 39.434 530 289 8 41 554 4 517 1.64e-117 358
Msa0429600 AT1G62200.3 35.495 586 323 8 10 552 60 633 1.66e-117 362
Msa0429600 AT2G02020.1 35.688 538 306 5 10 542 36 538 2.35e-114 351
Msa0429600 AT5G46050.1 37.011 562 339 9 13 565 23 578 1.58e-111 345
Msa0429600 AT5G46040.1 35.649 547 340 7 12 550 22 564 6.60e-110 341
Msa0429600 AT5G13400.1 35.125 558 341 9 16 556 64 617 1.29e-107 336
Msa0429600 AT3G54450.1 34.464 560 327 10 14 555 10 547 3.26e-105 327
Msa0429600 AT1G69870.1 35.060 579 351 9 6 565 41 613 6.11e-105 329
Msa0429600 AT3G21670.1 35.507 552 329 6 10 550 23 558 1.76e-104 327
Msa0429600 AT2G40460.1 35.199 554 338 10 10 554 18 559 1.64e-103 324
Msa0429600 AT2G37900.1 34.342 562 337 9 6 553 26 569 3.13e-103 323
Msa0429600 AT3G53960.1 33.573 557 340 11 13 553 34 576 5.79e-100 315
Msa0429600 AT1G32450.1 31.652 575 367 9 10 564 31 599 4.17e-97 308
Msa0429600 AT5G46050.2 38.085 470 277 8 104 565 3 466 2.42e-96 302
Msa0429600 AT1G72140.1 34.347 559 317 11 10 551 28 553 3.37e-96 304
Msa0429600 AT4G21680.1 31.851 562 358 7 10 553 22 576 6.49e-95 302
Msa0429600 AT2G37900.2 34.940 498 294 8 68 553 11 490 1.03e-94 298
Msa0429600 AT2G02020.2 32.288 542 298 8 10 542 36 517 4.87e-94 298
Msa0429600 AT1G22570.1 33.892 537 313 11 11 528 25 538 1.58e-92 295
Msa0429600 AT1G22550.1 32.270 564 337 9 11 554 25 563 2.18e-92 295
Msa0429600 AT1G72125.1 32.731 553 340 10 14 553 26 559 8.28e-92 293
Msa0429600 AT1G72120.1 33.394 548 330 8 18 553 31 555 3.20e-91 291
Msa0429600 AT1G22540.1 33.454 553 338 10 10 553 24 555 4.95e-90 288
Msa0429600 AT1G22570.2 33.846 520 302 11 28 528 5 501 5.16e-89 285
Msa0429600 AT5G62680.1 31.294 572 364 9 5 555 34 597 3.03e-88 285
Msa0429600 AT1G72130.1 32.721 544 318 10 18 550 27 533 2.10e-87 281
Msa0429600 AT1G27080.1 31.542 577 361 11 1 562 1 558 5.01e-87 281
Msa0429600 AT5G19640.1 30.275 545 343 10 18 548 61 582 4.06e-84 274
Msa0429600 AT3G47960.1 31.206 564 359 9 14 555 57 613 4.75e-83 272
Msa0429600 AT3G16180.1 30.070 572 371 11 10 561 16 578 3.23e-81 266
Msa0429600 AT1G27080.2 33.072 511 310 10 67 562 23 516 8.47e-81 263
Msa0429600 AT1G18880.1 29.772 571 364 11 19 567 22 577 1.99e-80 264
Msa0429600 AT1G52190.1 29.021 572 375 11 14 563 19 581 1.24e-78 259
Msa0429600 AT3G45660.1 29.821 560 355 14 15 561 20 554 4.20e-77 254
Msa0429600 AT3G45660.3 29.821 560 355 14 15 561 20 554 4.20e-77 254
Msa0429600 AT3G45660.2 29.821 560 355 14 15 561 41 575 5.03e-77 254
Msa0429600 AT3G45650.1 29.502 522 337 8 42 554 48 547 1.95e-76 253
Msa0429600 AT3G45720.1 30.280 535 334 12 42 563 45 553 7.98e-76 251
Msa0429600 AT1G69860.1 29.837 553 365 8 14 556 16 555 9.05e-76 251
Msa0429600 AT3G45710.1 29.923 518 328 13 59 563 63 558 1.80e-74 247
Msa0429600 AT3G45700.1 30.784 536 330 15 45 563 35 546 3.50e-73 244
Msa0429600 AT1G72130.2 33.716 436 255 8 125 549 2 414 1.01e-72 239
Msa0429600 AT1G72130.3 33.716 436 255 8 125 549 2 414 1.01e-72 239
Msa0429600 AT5G28470.2 27.965 565 380 9 6 555 7 559 1.29e-72 243
Msa0429600 AT3G45680.1 30.038 526 332 12 42 555 46 547 2.01e-72 242
Msa0429600 AT3G45650.2 28.233 549 337 9 42 555 48 574 1.56e-71 240
Msa0429600 AT5G28470.1 27.788 565 379 10 6 555 7 557 1.64e-69 234
Msa0429600 AT3G45690.1 29.084 557 327 17 5 554 8 503 7.53e-68 229
Msa0429600 AT5G14940.1 27.352 574 355 17 14 556 5 547 3.70e-60 209
Msa0429600 AT3G01350.1 26.279 567 364 12 14 548 5 549 1.96e-54 194
Msa0429600 AT2G38100.1 24.587 545 339 17 44 564 18 514 6.42e-31 127
Msa0429600 AT2G38100.2 24.587 545 339 17 44 564 2 498 7.21e-31 126
Msa0429600 AT2G38100.3 24.587 545 339 17 44 564 24 520 8.66e-31 126
Msa0429600 AT5G11570.1 22.684 529 329 12 25 547 22 476 1.33e-30 125

Find 115 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGACATGTTTACACTTAT+TGG 0.112396 3_2:-81067837 Msa0429600:CDS
AATATTGTGCTTAATATTAT+TGG 0.168870 3_2:+81068236 None:intergenic
TTTACTTGGTTTGTGCTTCT+TGG 0.185331 3_2:-81067593 Msa0429600:CDS
CTTCTGCATTCTCCGGAATT+TGG 0.196390 3_2:+81068551 None:intergenic
CTTACCACAGGAGCAATATT+TGG 0.237027 3_2:-81068868 Msa0429600:CDS
TTGGTGTTACTTTCATTAAT+TGG 0.238023 3_2:-81068849 Msa0429600:CDS
AACAACCCTAACCAACTTAA+TGG 0.251379 3_2:-81069909 Msa0429600:CDS
CACTTAGTACAGCAATTTCT+TGG 0.276660 3_2:-81067770 Msa0429600:CDS
ACCTGTATGATTCTAATTAG+AGG 0.292803 3_2:+81068706 None:intergenic
GAAAGTTGAGCTGCTTCCTT+TGG 0.308304 3_2:+81068919 None:intergenic
CACCTTCAAAGAATTGGAAT+TGG 0.309993 3_2:-81068011 Msa0429600:CDS
TTGGATCTTTATCATCAAAT+TGG 0.315670 3_2:+81068938 None:intergenic
CCTAGTCTTCTTTGTACCCT+TGG 0.318512 3_2:+81070158 None:intergenic
ATCTACCATATTATGTTCTA+TGG 0.326060 3_2:+81067923 None:intergenic
CAGTTCCCATTAAGTTGGTT+AGG 0.326657 3_2:+81069903 None:intergenic
ATCAGACACCTTCAAAGAAT+TGG 0.327219 3_2:-81068017 Msa0429600:CDS
TCTTTGAAGGTGTCTGATTC+CGG 0.339948 3_2:+81068022 None:intergenic
GCTATATCTTTGCAAGGAAT+TGG 0.342659 3_2:+81069087 None:intergenic
TTAAAAGGACTGATCAATTC+AGG 0.346244 3_2:-81068480 Msa0429600:intron
CACTTGTTCCTAATGCAAAA+AGG 0.346610 3_2:+81068995 None:intergenic
ACAGTTATGAAATCCTTAAA+AGG 0.349093 3_2:-81068495 Msa0429600:CDS
TCACATTGGTTCATATGAAT+TGG 0.352432 3_2:+81069063 None:intergenic
GCTATATCAATGTTAGTTGC+TGG 0.355294 3_2:-81067975 Msa0429600:CDS
CTCAATTCTCTCTATTTGCA+TGG 0.360522 3_2:-81068767 Msa0429600:CDS
TGTAGCCATAGAACATAATA+TGG 0.362955 3_2:-81067928 Msa0429600:CDS
AAATGATGTTGACATGGTTA+AGG 0.368323 3_2:-81067529 Msa0429600:CDS
TGCATTTCTTCTGCATTCTC+CGG 0.374049 3_2:+81068544 None:intergenic
AAGGAATTGGTCTTAATTGT+TGG 0.385710 3_2:+81069100 None:intergenic
TCTTGGTGTTCTGTTGCATT+TGG 0.392399 3_2:-81067753 Msa0429600:CDS
CTCGGTCGTATAGAGGAATT+AGG 0.398446 3_2:+81068084 None:intergenic
CATTTATCTATATAAGTTCA+TGG 0.398857 3_2:-81070472 Msa0429600:five_prime_UTR
ATGAACAATAGAGGGATTAC+TGG 0.402130 3_2:+81068113 None:intergenic
ATCCAATTCCAATTCTTTGA+AGG 0.403302 3_2:+81068009 None:intergenic
CTAATTAGAGGACTTCCCTT+TGG 0.409783 3_2:+81068718 None:intergenic
CCAGGGAATCTGCAGAAGTA+TGG 0.410219 3_2:-81070189 Msa0429600:intron
AGCTTAATAACTTATTTCAC+TGG 0.415965 3_2:-81069962 Msa0429600:CDS
TTAATATTATTGGTAGCATT+CGG 0.424737 3_2:+81068246 None:intergenic
AACCTTGGACACAAACATCT+TGG 0.425740 3_2:-81068162 Msa0429600:CDS
ATCAAATTGGTCAGCTCCTA+AGG 0.427585 3_2:+81068951 None:intergenic
TTGTGTTCTGTTTGCATGCA+TGG 0.432835 3_2:-81069819 Msa0429600:CDS
AACCAATGTGAACCTGCTAA+TGG 0.439088 3_2:-81069051 Msa0429600:CDS
ATTAGGAACAAGTGGTGTTA+AGG 0.443046 3_2:-81068986 Msa0429600:CDS
TCAAAGAATTGGAATTGGAT+TGG 0.444870 3_2:-81068006 Msa0429600:CDS
TTCTATGCAGAAAGTTCAGC+TGG 0.449535 3_2:-81067801 Msa0429600:CDS
AAACAGAAAACTCCAAATTC+CGG 0.450491 3_2:-81068563 Msa0429600:CDS
GAAGGTGTCTGATTCCGGTT+GGG 0.453057 3_2:+81068027 None:intergenic
ACCTTGGACACAAACATCTT+GGG 0.453201 3_2:-81068161 Msa0429600:CDS
ACAACCCTAACCAACTTAAT+GGG 0.457460 3_2:-81069908 Msa0429600:CDS
CAAGCTGCTATACTTTATAC+AGG 0.458105 3_2:-81069024 Msa0429600:CDS
GTACTAATCAAGGATGGTAT+TGG 0.459784 3_2:-81068822 Msa0429600:CDS
GGAAACGTGCTTGAACTGTT+AGG 0.460595 3_2:+81069121 None:intergenic
TAGTGTCTTCTTTGATCTGA+AGG 0.461038 3_2:+81070410 None:intergenic
AGTTCCCATTAAGTTGGTTA+GGG 0.462802 3_2:+81069904 None:intergenic
AAAAGCAGTTCCCATTAAGT+TGG 0.463975 3_2:+81069898 None:intergenic
GCAGCTTGGCTTCCATTAGC+AGG 0.464099 3_2:+81069039 None:intergenic
TTCTTAGATAGAGCAGCAGT+TGG 0.471072 3_2:-81068335 Msa0429600:CDS
AGGACAAACATGAACAATAG+AGG 0.473937 3_2:+81068104 None:intergenic
AATTGGATTAGTACTAATCA+AGG 0.476446 3_2:-81068832 Msa0429600:CDS
GTTTGCATGCATGGAATTGT+TGG 0.479572 3_2:-81069810 Msa0429600:intron
AAGGCAGCTTTACCAGCCTT+AGG 0.482025 3_2:-81068967 Msa0429600:CDS
AGTTATTAAGCTCACTGCAT+TGG 0.489046 3_2:+81069973 None:intergenic
TGAAGGTGTCTGATTCCGGT+TGG 0.491653 3_2:+81068026 None:intergenic
TCCTCTAATTAGAATCATAC+AGG 0.495772 3_2:-81068707 Msa0429600:intron
TACAGAAACAATACTCCAAA+GGG 0.497381 3_2:-81068733 Msa0429600:CDS
GTTGAACTTTCAGGTGTTTG+TGG 0.503430 3_2:-81068596 Msa0429600:intron
CAAATATTGCTCCTGTGGTA+AGG 0.505900 3_2:+81068869 None:intergenic
TTTCTGATACATATTTGTCT+AGG 0.508442 3_2:-81069850 Msa0429600:CDS
ATTACTGGGAGGGAGGGTCC+TGG 0.515478 3_2:+81068128 None:intergenic
TTAGATAGAGCAGCAGTTGG+AGG 0.517849 3_2:-81068332 Msa0429600:CDS
CTGTGATTCTTCGAATAAGC+GGG 0.518290 3_2:+81068054 None:intergenic
TTATTGGTAGCATTCGGACT+AGG 0.518823 3_2:+81068252 None:intergenic
ATCTTGGGATTCAAAATGCC+AGG 0.520418 3_2:-81068146 Msa0429600:CDS
GAGGAAACAGTACAGGATCA+TGG 0.528992 3_2:-81068313 Msa0429600:CDS
AGAATCACAGGAATCCCAAC+CGG 0.532778 3_2:-81068041 Msa0429600:CDS
TCCCAAGATGTTTGTGTCCA+AGG 0.533877 3_2:+81068160 None:intergenic
TCAATTCTCTCTATTTGCAT+GGG 0.538564 3_2:-81068766 Msa0429600:CDS
TTCCATTAGCAGGTTCACAT+TGG 0.538946 3_2:+81069049 None:intergenic
CCAAGGGTACAAAGAAGACT+AGG 0.545747 3_2:-81070158 Msa0429600:CDS
CATACAACAAAGCACAACCT+TGG 0.548442 3_2:-81068177 Msa0429600:CDS
GCAGTTGGAGGAAACAGTAC+AGG 0.551246 3_2:-81068320 Msa0429600:CDS
AGAGGGATTACTGGGAGGGA+GGG 0.552016 3_2:+81068122 None:intergenic
GATAAATGTGCCGCAAGTTG+TGG 0.555661 3_2:+81070487 None:intergenic
CCGCTTATTCGAAGAATCAC+AGG 0.558543 3_2:-81068053 Msa0429600:CDS
AATTGGTCAGCTCCTAAGGC+TGG 0.558800 3_2:+81068955 None:intergenic
GCTTAATAACTTATTTCACT+GGG 0.561279 3_2:-81069961 Msa0429600:CDS
TAGAGGGATTACTGGGAGGG+AGG 0.563260 3_2:+81068121 None:intergenic
CAAAGTGAGTGGTGGTTGGT+TGG 0.564096 3_2:-81067694 Msa0429600:CDS
CTTACTTCATCCACAACTTG+CGG 0.568581 3_2:-81070497 Msa0429600:five_prime_UTR
CAATAGAGGGATTACTGGGA+GGG 0.581806 3_2:+81068118 None:intergenic
CTACAGAAACAATACTCCAA+AGG 0.582632 3_2:-81068734 Msa0429600:CDS
TTAACAAAGTGAGTGGTGGT+TGG 0.583530 3_2:-81067698 Msa0429600:CDS
TATGGAAGGGTTAGAGAACA+TGG 0.587825 3_2:-81070005 Msa0429600:CDS
AACACCAAATATTGCTCCTG+TGG 0.591161 3_2:+81068864 None:intergenic
GGACAAACATGAACAATAGA+GGG 0.591843 3_2:+81068105 None:intergenic
TACAAGCACAGTGGTTGTTG+AGG 0.592321 3_2:-81067724 Msa0429600:CDS
ATTGGTGCTATATCTTTGCA+AGG 0.603950 3_2:+81069081 None:intergenic
ATTTGATGATAAAGATCCAA+AGG 0.609608 3_2:-81068935 Msa0429600:CDS
CTGTATAAAGTATAGCAGCT+TGG 0.610383 3_2:+81069025 None:intergenic
TGAACAATAGAGGGATTACT+GGG 0.612071 3_2:+81068114 None:intergenic
TGATTTAAATGATGTTGACA+TGG 0.624317 3_2:-81067535 Msa0429600:CDS
GAAGTATGGCAACACAACCA+AGG 0.637959 3_2:-81070175 Msa0429600:CDS
CCTGTGATTCTTCGAATAAG+CGG 0.644958 3_2:+81068053 None:intergenic
GGATTAGTACTAATCAAGGA+TGG 0.648794 3_2:-81068828 Msa0429600:CDS
AAGTATGGCAACACAACCAA+GGG 0.650795 3_2:-81070174 Msa0429600:CDS
ATCAAAGAAGACACTAACAA+TGG 0.660539 3_2:-81070403 Msa0429600:intron
GAAATTAATCCACCTAGGAG+TGG 0.661331 3_2:+81069869 None:intergenic
CAACATCATTTAAATCACCT+AGG 0.666986 3_2:+81067541 None:intergenic
TTGGTATAGATACAAAACAG+TGG 0.674197 3_2:-81067574 Msa0429600:CDS
TATCAGAAATTAATCCACCT+AGG 0.677447 3_2:+81069864 None:intergenic
AGGGTACAAAGAAGACTAGG+AGG 0.688134 3_2:-81070155 Msa0429600:CDS
GAGGTAGTTAACAAAGTGAG+TGG 0.707459 3_2:-81067705 Msa0429600:CDS
ACAATAGAGGGATTACTGGG+AGG 0.708379 3_2:+81068117 None:intergenic
ACAGTGGAAGACAAACACCT+AGG 0.710549 3_2:-81067558 Msa0429600:CDS
GTAGTTAACAAAGTGAGTGG+TGG 0.723635 3_2:-81067702 Msa0429600:CDS
TGGTTACTTTACAAGCACAG+TGG 0.730755 3_2:-81067733 Msa0429600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGACATTATAAAAATAAATT+TGG + chr3_2:81067564-81067583 None:intergenic 10.0%
!!! AAACATTTTTAACATATAAA+AGG + chr3_2:81068040-81068059 None:intergenic 10.0%
!!! ATTTTTAATGTTCTTCAAAA+TGG - chr3_2:81067758-81067777 Msa0429600:CDS 15.0%
!! TCAATTTCTTAACTTATTAT+AGG - chr3_2:81067800-81067819 Msa0429600:CDS 15.0%
!! TAACTTATTATAGGTTATAT+TGG - chr3_2:81067809-81067828 Msa0429600:CDS 15.0%
!!! TAAATTGAAATTCCAATTTT+TGG - chr3_2:81068073-81068092 Msa0429600:CDS 15.0%
!! TGTTTATAATGATTAATCAT+GGG + chr3_2:81068689-81068708 None:intergenic 15.0%
!! TTGTTTATAATGATTAATCA+TGG + chr3_2:81068690-81068709 None:intergenic 15.0%
!!! AACTAATTTTTTTAATTGCA+GGG - chr3_2:81068955-81068974 Msa0429600:CDS 15.0%
!! AAAATGTTATTGTACTTTAA+AGG - chr3_2:81069460-81069479 Msa0429600:intron 15.0%
!! AAATGTTATTGTACTTTAAA+GGG - chr3_2:81069461-81069480 Msa0429600:intron 15.0%
!! AATATTGTGCTTAATATTAT+TGG + chr3_2:81069875-81069894 None:intergenic 15.0%
!!! ATTTGGTTACATTTTTGTAA+GGG + chr3_2:81067547-81067566 None:intergenic 20.0%
!!! AATTTGGTTACATTTTTGTA+AGG + chr3_2:81067548-81067567 None:intergenic 20.0%
!! CATTTATCTATATAAGTTCA+TGG - chr3_2:81067636-81067655 Msa0429600:CDS 20.0%
!! TGAAGATAGAATAAAAATGA+GGG + chr3_2:81068522-81068541 None:intergenic 20.0%
!!! GCATATGAGATTTTTTTAAA+AGG - chr3_2:81068918-81068937 Msa0429600:CDS 20.0%
!!! CAACTAATTTTTTTAATTGC+AGG - chr3_2:81068954-81068973 Msa0429600:CDS 20.0%
!!! AACTTTCAAGCTTTTTTAAT+TGG - chr3_2:81069205-81069224 Msa0429600:intron 20.0%
!!! ATTTAATTTGTTGAACTTTC+AGG - chr3_2:81069503-81069522 Msa0429600:intron 20.0%
!!! TTAATATTATTGGTAGCATT+CGG + chr3_2:81069865-81069884 None:intergenic 20.0%
!!! TGTAAACTTTGTATTTTACT+TGG - chr3_2:81070501-81070520 Msa0429600:five_prime_UTR 20.0%
! TGAAGAACATTAAAAATGTG+TGG + chr3_2:81067755-81067774 None:intergenic 25.0%
!! ATTGAATCATTTTCCTTAAC+TGG + chr3_2:81067785-81067804 None:intergenic 25.0%
!! TTTTGTATATGGTAAGAACT+TGG - chr3_2:81067991-81068010 Msa0429600:CDS 25.0%
! AGCTTAATAACTTATTTCAC+TGG - chr3_2:81068146-81068165 Msa0429600:CDS 25.0%
! GCTTAATAACTTATTTCACT+GGG - chr3_2:81068147-81068166 Msa0429600:CDS 25.0%
! TTTCTGATACATATTTGTCT+AGG - chr3_2:81068258-81068277 Msa0429600:CDS 25.0%
!! TTGATTCTCAAATGTGTTTT+CGG + chr3_2:81068406-81068425 None:intergenic 25.0%
! GTGAAGATAGAATAAAAATG+AGG + chr3_2:81068523-81068542 None:intergenic 25.0%
! TAATTGAAGGTGAATGTTTA+AGG - chr3_2:81068730-81068749 Msa0429600:CDS 25.0%
! TAAAAAAATCTCATATGCGA+CGG + chr3_2:81068916-81068935 None:intergenic 25.0%
! TTGGATCTTTATCATCAAAT+TGG + chr3_2:81069173-81069192 None:intergenic 25.0%
!! ATTTGATGATAAAGATCCAA+AGG - chr3_2:81069173-81069192 Msa0429600:intron 25.0%
!!! TTGGTGTTACTTTCATTAAT+TGG - chr3_2:81069259-81069278 Msa0429600:intron 25.0%
!!! AATTGGATTAGTACTAATCA+AGG - chr3_2:81069276-81069295 Msa0429600:intron 25.0%
! ACAGTTATGAAATCCTTAAA+AGG - chr3_2:81069613-81069632 Msa0429600:intron 25.0%
! ATCTACCATATTATGTTCTA+TGG + chr3_2:81070188-81070207 None:intergenic 25.0%
!!! GGTTTTCAATATGCTATTTT+TGG - chr3_2:81070244-81070263 Msa0429600:intron 25.0%
!!! ACAAGCTTAACTACTTTTAT+TGG - chr3_2:81070458-81070477 Msa0429600:five_prime_UTR 25.0%
! TGATTTAAATGATGTTGACA+TGG - chr3_2:81070573-81070592 Msa0429600:five_prime_UTR 25.0%
ATCAAAGAAGACACTAACAA+TGG - chr3_2:81067705-81067724 Msa0429600:CDS 30.0%
ACATATAAAAGGACACACAT+GGG + chr3_2:81068029-81068048 None:intergenic 30.0%
AACATATAAAAGGACACACA+TGG + chr3_2:81068030-81068049 None:intergenic 30.0%
! TTTTGTTAAGCTGAAGTTCA+TGG + chr3_2:81068174-81068193 None:intergenic 30.0%
TATCAGAAATTAATCCACCT+AGG + chr3_2:81068247-81068266 None:intergenic 30.0%
CATTCACCTTCAATTATTGA+AGG + chr3_2:81068726-81068745 None:intergenic 30.0%
!! AAGGAATTGGTCTTAATTGT+TGG + chr3_2:81069011-81069030 None:intergenic 30.0%
!! TCACATTGGTTCATATGAAT+TGG + chr3_2:81069048-81069067 None:intergenic 30.0%
TCAATTCTCTCTATTTGCAT+GGG - chr3_2:81069342-81069361 Msa0429600:intron 30.0%
TACAGAAACAATACTCCAAA+GGG - chr3_2:81069375-81069394 Msa0429600:intron 30.0%
TCCTCTAATTAGAATCATAC+AGG - chr3_2:81069401-81069420 Msa0429600:intron 30.0%
ACCTGTATGATTCTAATTAG+AGG + chr3_2:81069405-81069424 None:intergenic 30.0%
GAAGCATGTAGAAAAAAATG+AGG + chr3_2:81069440-81069459 None:intergenic 30.0%
AAACAGAAAACTCCAAATTC+CGG - chr3_2:81069545-81069564 Msa0429600:intron 30.0%
! TGAATTGATCAGTCCTTTTA+AGG + chr3_2:81069629-81069648 None:intergenic 30.0%
TTAAAAGGACTGATCAATTC+AGG - chr3_2:81069628-81069647 Msa0429600:intron 30.0%
ATCCAATTCCAATTCTTTGA+AGG + chr3_2:81070102-81070121 None:intergenic 30.0%
TCAAAGAATTGGAATTGGAT+TGG - chr3_2:81070102-81070121 Msa0429600:intron 30.0%
TGTAGCCATAGAACATAATA+TGG - chr3_2:81070180-81070199 Msa0429600:CDS 30.0%
CAAAAAACACTCATTGGTAA+AGG + chr3_2:81070220-81070239 None:intergenic 30.0%
!!! CTTTACCAATGAGTGTTTTT+TGG - chr3_2:81070218-81070237 Msa0429600:intron 30.0%
TTGGTATAGATACAAAACAG+TGG - chr3_2:81070534-81070553 Msa0429600:five_prime_UTR 30.0%
CAACATCATTTAAATCACCT+AGG + chr3_2:81070570-81070589 None:intergenic 30.0%
AAATGATGTTGACATGGTTA+AGG - chr3_2:81070579-81070598 Msa0429600:five_prime_UTR 30.0%
TAGTGTCTTCTTTGATCTGA+AGG + chr3_2:81067701-81067720 None:intergenic 35.0%
TCTTCAAAATGGACCAGTTA+AGG - chr3_2:81067769-81067788 Msa0429600:CDS 35.0%
!! ATAGGTTATATTGGTGTCAC+TGG - chr3_2:81067818-81067837 Msa0429600:CDS 35.0%
! AGTGTTCTAAGCAGACAATT+CGG + chr3_2:81067877-81067896 None:intergenic 35.0%
! AACTTGTTTGATTACTTGCC+AGG - chr3_2:81067901-81067920 Msa0429600:CDS 35.0%
ACTTGTTTGATTACTTGCCA+GGG - chr3_2:81067902-81067921 Msa0429600:CDS 35.0%
!! AGAGCTGCACTTTTTGTATA+TGG - chr3_2:81067980-81067999 Msa0429600:CDS 35.0%
TATGGTAAGAACTTGGAACT+TGG - chr3_2:81067998-81068017 Msa0429600:CDS 35.0%
AGTTATTAAGCTCACTGCAT+TGG + chr3_2:81068138-81068157 None:intergenic 35.0%
AACAACCCTAACCAACTTAA+TGG - chr3_2:81068199-81068218 Msa0429600:CDS 35.0%
ACAACCCTAACCAACTTAAT+GGG - chr3_2:81068200-81068219 Msa0429600:CDS 35.0%
!! AGTTCCCATTAAGTTGGTTA+GGG + chr3_2:81068207-81068226 None:intergenic 35.0%
AAAAGCAGTTCCCATTAAGT+TGG + chr3_2:81068213-81068232 None:intergenic 35.0%
CTATCTTCACTTGCATTTCA+CGG - chr3_2:81068533-81068552 Msa0429600:CDS 35.0%
TGAGAGCCTTCAATAATTGA+AGG - chr3_2:81068717-81068736 Msa0429600:CDS 35.0%
CGGTTGTAAAATAATCGCTA+TGG + chr3_2:81068896-81068915 None:intergenic 35.0%
GCTATATCTTTGCAAGGAAT+TGG + chr3_2:81069024-81069043 None:intergenic 35.0%
!! ATTGGTGCTATATCTTTGCA+AGG + chr3_2:81069030-81069049 None:intergenic 35.0%
CTGTATAAAGTATAGCAGCT+TGG + chr3_2:81069086-81069105 None:intergenic 35.0%
CAAGCTGCTATACTTTATAC+AGG - chr3_2:81069084-81069103 Msa0429600:CDS 35.0%
! GGTCTATACCTTTTTGCATT+AGG - chr3_2:81069105-81069124 Msa0429600:CDS 35.0%
CACTTGTTCCTAATGCAAAA+AGG + chr3_2:81069116-81069135 None:intergenic 35.0%
! CTTTTTGCATTAGGAACAAG+TGG - chr3_2:81069114-81069133 Msa0429600:CDS 35.0%
! ATTAGGAACAAGTGGTGTTA+AGG - chr3_2:81069122-81069141 Msa0429600:CDS 35.0%
!!! TTTTTACTTAGCCTTACCAC+AGG - chr3_2:81069228-81069247 Msa0429600:intron 35.0%
! GGATTAGTACTAATCAAGGA+TGG - chr3_2:81069280-81069299 Msa0429600:intron 35.0%
GTACTAATCAAGGATGGTAT+TGG - chr3_2:81069286-81069305 Msa0429600:intron 35.0%
CTCAATTCTCTCTATTTGCA+TGG - chr3_2:81069341-81069360 Msa0429600:intron 35.0%
CTACAGAAACAATACTCCAA+AGG - chr3_2:81069374-81069393 Msa0429600:intron 35.0%
!!! TTGGAGTTTTCTGTTTCTGA+AGG + chr3_2:81069541-81069560 None:intergenic 35.0%
GAGATCCATGAAAAAGAAAG+AGG - chr3_2:81069588-81069607 Msa0429600:intron 35.0%
!! TGTCTCCTCTTTCTTTTTCA+TGG + chr3_2:81069596-81069615 None:intergenic 35.0%
TGAACAATAGAGGGATTACT+GGG + chr3_2:81069997-81070016 None:intergenic 35.0%
ATGAACAATAGAGGGATTAC+TGG + chr3_2:81069998-81070017 None:intergenic 35.0%
GGACAAACATGAACAATAGA+GGG + chr3_2:81070006-81070025 None:intergenic 35.0%
AGGACAAACATGAACAATAG+AGG + chr3_2:81070007-81070026 None:intergenic 35.0%
ATCAGACACCTTCAAAGAAT+TGG - chr3_2:81070091-81070110 Msa0429600:intron 35.0%
CACCTTCAAAGAATTGGAAT+TGG - chr3_2:81070097-81070116 Msa0429600:intron 35.0%
GCTATATCAATGTTAGTTGC+TGG - chr3_2:81070133-81070152 Msa0429600:CDS 35.0%
!!! ACCAATGAGTGTTTTTTGGT+TGG - chr3_2:81070222-81070241 Msa0429600:intron 35.0%
!!! CCAATGAGTGTTTTTTGGTT+GGG - chr3_2:81070223-81070242 Msa0429600:intron 35.0%
GCAGACATGTTTACACTTAT+TGG - chr3_2:81070271-81070290 Msa0429600:intron 35.0%
CACTTAGTACAGCAATTTCT+TGG - chr3_2:81070338-81070357 Msa0429600:intron 35.0%
!! TTTACTTGGTTTGTGCTTCT+TGG - chr3_2:81070515-81070534 Msa0429600:five_prime_UTR 35.0%
CTTACTTCATCCACAACTTG+CGG - chr3_2:81067611-81067630 Msa0429600:CDS 40.0%
TTCTAAGCAGACAATTCGGT+TGG + chr3_2:81067873-81067892 None:intergenic 40.0%
AAGTATGGCAACACAACCAA+GGG - chr3_2:81067934-81067953 Msa0429600:CDS 40.0%
CCATAGCTGCATCCAAAAAT+TGG + chr3_2:81068088-81068107 None:intergenic 40.0%
!! CCAATTTTTGGATGCAGCTA+TGG - chr3_2:81068085-81068104 Msa0429600:CDS 40.0%
! TTTTTGGATGCAGCTATGGA+AGG - chr3_2:81068089-81068108 Msa0429600:CDS 40.0%
! TTTTGGATGCAGCTATGGAA+GGG - chr3_2:81068090-81068109 Msa0429600:CDS 40.0%
TATGGAAGGGTTAGAGAACA+TGG - chr3_2:81068103-81068122 Msa0429600:CDS 40.0%
!! CAGTTCCCATTAAGTTGGTT+AGG + chr3_2:81068208-81068227 None:intergenic 40.0%
!!! GCTTTTTTACTACCACTCCT+AGG - chr3_2:81068227-81068246 Msa0429600:CDS 40.0%
! TTTTTACTACCACTCCTAGG+TGG - chr3_2:81068230-81068249 Msa0429600:CDS 40.0%
GAAATTAATCCACCTAGGAG+TGG + chr3_2:81068242-81068261 None:intergenic 40.0%
TTGTGTTCTGTTTGCATGCA+TGG - chr3_2:81068289-81068308 Msa0429600:CDS 40.0%
GTTTGCATGCATGGAATTGT+TGG - chr3_2:81068298-81068317 Msa0429600:CDS 40.0%
CTCCTACATTACCAACCATA+GGG + chr3_2:81068579-81068598 None:intergenic 40.0%
AACCAATGTGAACCTGCTAA+TGG - chr3_2:81069057-81069076 Msa0429600:CDS 40.0%
TTCCATTAGCAGGTTCACAT+TGG + chr3_2:81069062-81069081 None:intergenic 40.0%
ATCAAATTGGTCAGCTCCTA+AGG + chr3_2:81069160-81069179 None:intergenic 40.0%
CAAATATTGCTCCTGTGGTA+AGG + chr3_2:81069242-81069261 None:intergenic 40.0%
CTTACCACAGGAGCAATATT+TGG - chr3_2:81069240-81069259 Msa0429600:intron 40.0%
AACACCAAATATTGCTCCTG+TGG + chr3_2:81069247-81069266 None:intergenic 40.0%
CTAATTAGAGGACTTCCCTT+TGG + chr3_2:81069393-81069412 None:intergenic 40.0%
! GTTGAACTTTCAGGTGTTTG+TGG - chr3_2:81069512-81069531 Msa0429600:intron 40.0%
TGCATTTCTTCTGCATTCTC+CGG + chr3_2:81069567-81069586 None:intergenic 40.0%
TTCTTAGATAGAGCAGCAGT+TGG - chr3_2:81069773-81069792 Msa0429600:intron 40.0%
! TTATTGGTAGCATTCGGACT+AGG + chr3_2:81069859-81069878 None:intergenic 40.0%
CATACAACAAAGCACAACCT+TGG - chr3_2:81069931-81069950 Msa0429600:CDS 40.0%
AACCTTGGACACAAACATCT+TGG - chr3_2:81069946-81069965 Msa0429600:CDS 40.0%
ACCTTGGACACAAACATCTT+GGG - chr3_2:81069947-81069966 Msa0429600:CDS 40.0%
ATCTTGGGATTCAAAATGCC+AGG - chr3_2:81069962-81069981 Msa0429600:CDS 40.0%
ACAAAAACTCGGTCGTATAG+AGG + chr3_2:81070034-81070053 None:intergenic 40.0%
GAATAAGCGGGACAAAAACT+CGG + chr3_2:81070045-81070064 None:intergenic 40.0%
CTGTGATTCTTCGAATAAGC+GGG + chr3_2:81070057-81070076 None:intergenic 40.0%
CCTGTGATTCTTCGAATAAG+CGG + chr3_2:81070058-81070077 None:intergenic 40.0%
!! TCTTTGAAGGTGTCTGATTC+CGG + chr3_2:81070089-81070108 None:intergenic 40.0%
CCCAACCAAAAAACACTCAT+TGG + chr3_2:81070226-81070245 None:intergenic 40.0%
TTCTATGCAGAAAGTTCAGC+TGG - chr3_2:81070307-81070326 Msa0429600:intron 40.0%
!! TCTTGGTGTTCTGTTGCATT+TGG - chr3_2:81070355-81070374 Msa0429600:intron 40.0%
! TGGTTACTTTACAAGCACAG+TGG - chr3_2:81070375-81070394 Msa0429600:intron 40.0%
GAGGTAGTTAACAAAGTGAG+TGG - chr3_2:81070403-81070422 Msa0429600:intron 40.0%
GTAGTTAACAAAGTGAGTGG+TGG - chr3_2:81070406-81070425 Msa0429600:exon 40.0%
TTAACAAAGTGAGTGGTGGT+TGG - chr3_2:81070410-81070429 Msa0429600:five_prime_UTR 40.0%
GATAAATGTGCCGCAAGTTG+TGG + chr3_2:81067624-81067643 None:intergenic 45.0%
GAAGTATGGCAACACAACCA+AGG - chr3_2:81067933-81067952 Msa0429600:CDS 45.0%
! CCTAGTCTTCTTTGTACCCT+TGG + chr3_2:81067953-81067972 None:intergenic 45.0%
! CCAAGGGTACAAAGAAGACT+AGG - chr3_2:81067950-81067969 Msa0429600:CDS 45.0%
AGGGTACAAAGAAGACTAGG+AGG - chr3_2:81067953-81067972 Msa0429600:CDS 45.0%
TTGCATTTCACGGTACAGCA+AGG - chr3_2:81068543-81068562 Msa0429600:CDS 45.0%
GCTCCTACATTACCAACCAT+AGG + chr3_2:81068580-81068599 None:intergenic 45.0%
!! TGGTTGGTAATGTAGGAGCT+AGG - chr3_2:81068581-81068600 Msa0429600:CDS 45.0%
!! GGTTGGTAATGTAGGAGCTA+GGG - chr3_2:81068582-81068601 Msa0429600:CDS 45.0%
GTACTTTCAGCATCATGACG+TGG - chr3_2:81068658-81068677 Msa0429600:intron 45.0%
GGAAACGTGCTTGAACTGTT+AGG + chr3_2:81068990-81069009 None:intergenic 45.0%
GAAAGTTGAGCTGCTTCCTT+TGG + chr3_2:81069192-81069211 None:intergenic 45.0%
CTTCTGCATTCTCCGGAATT+TGG + chr3_2:81069560-81069579 None:intergenic 45.0%
TTAGATAGAGCAGCAGTTGG+AGG - chr3_2:81069776-81069795 Msa0429600:intron 45.0%
GAGGAAACAGTACAGGATCA+TGG - chr3_2:81069795-81069814 Msa0429600:intron 45.0%
TCCCAAGATGTTTGTGTCCA+AGG + chr3_2:81069951-81069970 None:intergenic 45.0%
CAATAGAGGGATTACTGGGA+GGG + chr3_2:81069993-81070012 None:intergenic 45.0%
ACAATAGAGGGATTACTGGG+AGG + chr3_2:81069994-81070013 None:intergenic 45.0%
CTCGGTCGTATAGAGGAATT+AGG + chr3_2:81070027-81070046 None:intergenic 45.0%
CCGCTTATTCGAAGAATCAC+AGG - chr3_2:81070055-81070074 Msa0429600:intron 45.0%
AGAATCACAGGAATCCCAAC+CGG - chr3_2:81070067-81070086 Msa0429600:intron 45.0%
TACAAGCACAGTGGTTGTTG+AGG - chr3_2:81070384-81070403 Msa0429600:intron 45.0%
ACAGTGGAAGACAAACACCT+AGG - chr3_2:81070550-81070569 Msa0429600:five_prime_UTR 45.0%
CCATACTTCTGCAGATTCCC+TGG + chr3_2:81067922-81067941 None:intergenic 50.0%
CCAGGGAATCTGCAGAAGTA+TGG - chr3_2:81067919-81067938 Msa0429600:CDS 50.0%
ACGGTACAGCAAGGTGAAGA+GGG - chr3_2:81068552-81068571 Msa0429600:CDS 50.0%
!! GGCCCTATGGTTGGTAATGT+AGG - chr3_2:81068574-81068593 Msa0429600:CDS 50.0%
AAGGCAGCTTTACCAGCCTT+AGG - chr3_2:81069141-81069160 Msa0429600:intron 50.0%
AATTGGTCAGCTCCTAAGGC+TGG + chr3_2:81069156-81069175 None:intergenic 50.0%
GCAGTTGGAGGAAACAGTAC+AGG - chr3_2:81069788-81069807 Msa0429600:intron 50.0%
!! GAAGGTGTCTGATTCCGGTT+GGG + chr3_2:81070084-81070103 None:intergenic 50.0%
!! TGAAGGTGTCTGATTCCGGT+TGG + chr3_2:81070085-81070104 None:intergenic 50.0%
CAAAGTGAGTGGTGGTTGGT+TGG - chr3_2:81070414-81070433 Msa0429600:five_prime_UTR 50.0%
CACGGTACAGCAAGGTGAAG+AGG - chr3_2:81068551-81068570 Msa0429600:CDS 55.0%
CGGTACAGCAAGGTGAAGAG+GGG - chr3_2:81068553-81068572 Msa0429600:CDS 55.0%
GCAGCTTGGCTTCCATTAGC+AGG + chr3_2:81069072-81069091 None:intergenic 55.0%
AGAGGGATTACTGGGAGGGA+GGG + chr3_2:81069989-81070008 None:intergenic 55.0%
TAGAGGGATTACTGGGAGGG+AGG + chr3_2:81069990-81070009 None:intergenic 55.0%
CAAGGTGAAGAGGGGCCCTA+TGG - chr3_2:81068561-81068580 Msa0429600:CDS 60.0%
GTGAAGAGGGGCCCTATGGT+TGG - chr3_2:81068565-81068584 Msa0429600:CDS 60.0%
ATTACTGGGAGGGAGGGTCC+TGG + chr3_2:81069983-81070002 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 81067524 81070606 81067524 ID=Msa0429600;Name=Msa0429600
chr3_2 mRNA 81067524 81070606 81067524 ID=Msa0429600-mRNA-1;Parent=Msa0429600;Name=Msa0429600-mRNA-1;_AED=0.06;_eAED=0.06;_QI=200|1|0.83|1|0.8|0.83|6|0|568
chr3_2 exon 81067524 81068358 81067524 ID=Msa0429600-mRNA-1:exon:22311;Parent=Msa0429600-mRNA-1
chr3_2 exon 81068481 81068605 81068481 ID=Msa0429600-mRNA-1:exon:22310;Parent=Msa0429600-mRNA-1
chr3_2 exon 81068708 81069154 81068708 ID=Msa0429600-mRNA-1:exon:22309;Parent=Msa0429600-mRNA-1
chr3_2 exon 81069811 81070028 81069811 ID=Msa0429600-mRNA-1:exon:22308;Parent=Msa0429600-mRNA-1
chr3_2 exon 81070129 81070207 81070129 ID=Msa0429600-mRNA-1:exon:22307;Parent=Msa0429600-mRNA-1
chr3_2 exon 81070404 81070606 81070404 ID=Msa0429600-mRNA-1:exon:22306;Parent=Msa0429600-mRNA-1
chr3_2 five_prime_UTR 81070407 81070606 81070407 ID=Msa0429600-mRNA-1:five_prime_utr;Parent=Msa0429600-mRNA-1
chr3_2 CDS 81070404 81070406 81070404 ID=Msa0429600-mRNA-1:cds;Parent=Msa0429600-mRNA-1
chr3_2 CDS 81070129 81070207 81070129 ID=Msa0429600-mRNA-1:cds;Parent=Msa0429600-mRNA-1
chr3_2 CDS 81069811 81070028 81069811 ID=Msa0429600-mRNA-1:cds;Parent=Msa0429600-mRNA-1
chr3_2 CDS 81068708 81069154 81068708 ID=Msa0429600-mRNA-1:cds;Parent=Msa0429600-mRNA-1
chr3_2 CDS 81068481 81068605 81068481 ID=Msa0429600-mRNA-1:cds;Parent=Msa0429600-mRNA-1
chr3_2 CDS 81067524 81068358 81067524 ID=Msa0429600-mRNA-1:cds;Parent=Msa0429600-mRNA-1
Gene Sequence

>Msa0429600

ATGGGAATCTGCAGAAGTATGGCAACACAACCAAGGGTACAAAGAAGACTAGGAGGAAAAAGAGCTGCACTTTTTGTATATGCTATGGAAGGGTTAGAGAACATGGCTTTTGTTGCCAATGCAGTGAGCTTAATAACTTATTTCACTGGGTCCATGAACTTCAGCTTAACAAAATCAGCAACAACCCTAACCAACTTAATGGGAACTGCTTTTTTACTACCACTCCTAGGTGGATTAATTTCTGATACATATTTGTCTAGGTTCAAGACTTGTGTTCTGTTTGCATGCATGGAATTGTTGGGATATAGTATCCTAACAGTTCAAGCACGTTTCCAACAATTAAGACCAATTCCTTGCAAAGATATAGCACCAATTCATATGAACCAATGTGAACCTGCTAATGGAAGCCAAGCTGCTATACTTTATACAGGTCTATACCTTTTTGCATTAGGAACAAGTGGTGTTAAGGCAGCTTTACCAGCCTTAGGAGCTGACCAATTTGATGATAAAGATCCAAAGGAAGCAGCTCAACTTTCAAGCTTTTTTAATTGGTTTTTACTTAGCCTTACCACAGGAGCAATATTTGGTGTTACTTTCATTAATTGGATTAGTACTAATCAAGGATGGTATTGGAGTTTTACTGTATGCACTATAGCAGTCTTTCTCTCAATTCTCTCTATTTGCATGGGTAAGTCATTCTACAGAAACAATACTCCAAAGGGAAGTCCTCTAATTAGAATCATACAGGTGTTTGTGGCAGCCTTCAGAAACAGAAAACTCCAAATTCCGGAGAATGCAGAAGAAATGCATGAGATCCATGAAAAAGAAAGAGGAGACAGTTATGAAATCCTTAAAAGGACTGATCAATTCAGATTCTTAGATAGAGCAGCAGTTGGAGGAAACAGTACAGGATCATGGAATCTTTGCACAGTGACACAAGTAGAAGAAACAAAAATCCTAGTCCGAATGCTACCAATAATATTAAGCACAATATTTATGAACACATGTTTAGCACAGCTTCAAACTTTCAGCATACAACAAAGCACAACCTTGGACACAAACATCTTGGGATTCAAAATGCCAGGACCCTCCCTCCCAGTAATCCCTCTATTGTTCATGTTTGTCCTAATTCCTCTATACGACCGAGTTTTTGTCCCGCTTATTCGAAGAATCACAGGAATCCCAACCGGAATCAGACACCTTCAAAGAATTGGAATTGGATTGGTTCTATCAGCTATATCAATGTTAGTTGCTGGTTTTGTCGAAACACGTAGAAAATCTGTAGCCATAGAACATAATATGGTAGATAGCACTGAGCCTTTACCAATGAGTGTTTTTTGGTTGGGTTTTCAATATGCTATTTTTGGAGCTGCAGACATGTTTACACTTATTGGACTTCTAGAGTTTTTCTATGCAGAAAGTTCAGCTGGAATGAAGTCACTTAGTACAGCAATTTCTTGGTGTTCTGTTGCATTTGGTTACTTTACAAGCACAGTGGTTGTTGAGGTAGTTAACAAAGTGAGTGGTGGTTGGTTGGCTAGTAATAACTTGAATAGAGACAAGCTTAACTACTTTTATTGGTTATTGTCAATCATAAGTGTTGTAAACTTTGTATTTTACTTGGTTTGTGCTTCTTGGTATAGATACAAAACAGTGGAAGACAAACACCTAGGTGATTTAAATGATGTTGACATGGTTAAGGTTTAA

Protein sequence

>Msa0429600

MGICRSMATQPRVQRRLGGKRAALFVYAMEGLENMAFVANAVSLITYFTGSMNFSLTKSATTLTNLMGTAFLLPLLGGLISDTYLSRFKTCVLFACMELLGYSILTVQARFQQLRPIPCKDIAPIHMNQCEPANGSQAAILYTGLYLFALGTSGVKAALPALGADQFDDKDPKEAAQLSSFFNWFLLSLTTGAIFGVTFINWISTNQGWYWSFTVCTIAVFLSILSICMGKSFYRNNTPKGSPLIRIIQVFVAAFRNRKLQIPENAEEMHEIHEKERGDSYEILKRTDQFRFLDRAAVGGNSTGSWNLCTVTQVEETKILVRMLPIILSTIFMNTCLAQLQTFSIQQSTTLDTNILGFKMPGPSLPVIPLLFMFVLIPLYDRVFVPLIRRITGIPTGIRHLQRIGIGLVLSAISMLVAGFVETRRKSVAIEHNMVDSTEPLPMSVFWLGFQYAIFGAADMFTLIGLLEFFYAESSAGMKSLSTAISWCSVAFGYFTSTVVVEVVNKVSGGWLASNNLNRDKLNYFYWLLSIISVVNFVFYLVCASWYRYKTVEDKHLGDLNDVDMVKV*