AlfalfaGEDB | Msa0241540

M. sativa cultivar zhongmu-4 / Msa0241540

KEGG: K15196
GO: GO:0000003 GO:0000126 GO:0001016 GO:0001032 GO:0001067 GO:0001085 GO:0001091 GO:0001093 GO:0001098 GO:0001099 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006359 GO:0006950 GO:0006979 GO:0007275 GO:0008134 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009846 GO:0009856 GO:0009889 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019899 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034599 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044706 GO:0044798 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070063 GO:0070887 GO:0080090 GO:0090576 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241540	XP_003594604.1	96.667	60	2	0	1	60	1	60	4.37e-29	131
Msa0241540	XP_003594604.1	97.291	406	11	0	61	466	127	532	0.0	813

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241540	sp\|O81787\|PTF2_ARATH	44.337	415	203	9	65	466	128	527	2.05e-84	272

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241540	G7IML9	96.667	60	2	0	1	60	1	60	2.09e-29	131
Msa0241540	G7IML9	97.291	406	11	0	61	466	127	532	0.0	813

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa0241540	0.822685	2.075833e-53	-8.615850e-47
Msa0010770	Msa0241540	0.841425	4.788319e-58	-8.615850e-47
Msa0037120	Msa0241540	0.829636	4.608657e-55	-8.615850e-47
Msa0055660	Msa0241540	0.825238	5.228455e-54	-8.615850e-47
Msa0065550	Msa0241540	0.800463	1.424587e-48	-8.615850e-47
Msa0078480	Msa0241540	0.815866	7.422676e-52	-8.615850e-47
Msa0084340	Msa0241540	0.810575	1.076777e-50	-8.615850e-47
Msa0090030	Msa0241540	0.807113	5.924184e-50	-8.615850e-47
Msa0096580	Msa0241540	0.807530	4.833520e-50	-8.615850e-47
Msa0097950	Msa0241540	0.822748	2.006953e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241540	MtrunA17_Chr2g0292981	96.667	60	2	0	1	60	1	60	3.53e-38	133

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241540	AT4G35540.1	44.337	415	203	9	65	466	128	527	2.08e-85	272
Msa0241540	AT4G35540.1	44.444	54	30	0	6	59	2	55	6.38e-11	65.1

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Find 111 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACATATAGGCCTAGTA+AGG	0.525978	2_2:+17165385	None:intergenic
AAATGCACAATATCAAAATC+TGG	0.409859	2_2:+17166448	None:intergenic
AACCGCCGGTTTCGTCGTCG+CGG	0.561590	2_2:+17166896	None:intergenic
AAGGATGAGGAAATTGAGAA+AGG	0.488481	2_2:-17165419	Msa0241540:CDS
AAGGTATTGTGGATGATGAA+AGG	0.587808	2_2:-17165886	Msa0241540:CDS
AATAGAGAAGGATATTGGAG+TGG	0.630511	2_2:-17165687	Msa0241540:CDS
AATGAAGTTGCGAATGCGGT+TGG	0.585805	2_2:-17166544	Msa0241540:CDS
AATTGACCATTGACAAATGA+GGG	0.504917	2_2:+17165653	None:intergenic
ACATCCTTCCTCTTCTCAAC+AGG	0.394246	2_2:+17166046	None:intergenic
ACCAAAACCGCAACCACCAA+AGG	0.546298	2_2:+17166289	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGGTGAATAGTTAGATTTG+AGG	+	chr2_2:17165425-17165444	None:intergenic	30.0%
TAAGTTTCGAATTGATCGAA+GGG	+	chr2_2:17165599-17165618	None:intergenic	30.0%
TACGAGCTGAGAATAATTTA+CGG	+	chr2_2:17165703-17165722	None:intergenic	30.0%
AACAATTCACCACTCAATTA+GGG	-	chr2_2:17165732-17165751	Msa0241540:CDS	30.0%
ATGATTAGTGATATCACTGA+TGG	-	chr2_2:17165785-17165804	Msa0241540:CDS	30.0%
GTTGATTATTTGGATTTGAG+AGG	-	chr2_2:17165959-17165978	Msa0241540:CDS	30.0%
TGATAGAATGAAGAAACAAG+GGG	-	chr2_2:17166072-17166091	Msa0241540:CDS	30.0%
TCCATATACTGAATCACAAA+CGG	+	chr2_2:17166355-17166374	None:intergenic	30.0%
AATTGACCATTGACAAATGA+GGG	+	chr2_2:17166790-17166809	None:intergenic	30.0%
ACTTGTTCTTCATCAAGTAA+AGG	-	chr2_2:17167002-17167021	Msa0241540:five_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	17165367	17167095	17165367	ID=Msa0241540;Name=Msa0241540
chr2_2	mRNA	17165367	17167095	17165367	ID=Msa0241540-mRNA-1;Parent=Msa0241540;Name=Msa0241540-mRNA-1;_AED=0.10;_eAED=0.10;_QI=130\|0\|0.5\|1\|0\|0\|2\|0\|466
chr2_2	exon	17165367	17166586	17165367	ID=Msa0241540-mRNA-1:exon:7063;Parent=Msa0241540-mRNA-1
chr2_2	exon	17166785	17167095	17166785	ID=Msa0241540-mRNA-1:exon:7062;Parent=Msa0241540-mRNA-1
chr2_2	five_prime_UTR	17166966	17167095	17166966	ID=Msa0241540-mRNA-1:five_prime_utr;Parent=Msa0241540-mRNA-1
chr2_2	CDS	17166785	17166965	17166785	ID=Msa0241540-mRNA-1:cds;Parent=Msa0241540-mRNA-1
chr2_2	CDS	17165367	17166586	17165367	ID=Msa0241540-mRNA-1:cds;Parent=Msa0241540-mRNA-1

Gene Sequence

>Msa0241540

ATGTCAACTTCTCGTCGCTGCATAAACTGCAGCAAAACCTCATTCACCCGCGACGACGAAACCGGCGGTTCATTCTGCTCCTCATGCGGCGCAGAACAGCCCTTCGATCAATTCGAAACTTACACCATCGGAATCAACGGTCCACAAGGAACCTTCGTCCACATCGGAACCTCCGGTTCAGATGAACATGCTTTATCGATGAATGAAGTTGCGAATGCGGTTGGTTGTGATGTTTTTGAGCTTGGGAAGATGGTTATTAGGGTTGTTGATTATTTGGATTTGAGAGGGAGTGATTTTCCAGATTTTGATATTGTGCATTTGTTGAAAAGGAGTGTTGATAGTTGTCGTTGTTTTAGGGAGGTTGATAGGAGTTTGGTTGATAGAATGAAGAAACAAGGGGTGTTTTTGTTGCAATGTGCGGTGAAGTTGTTTTTGAGTACGGGGCGTAGGCCATTACCTTTGGTGGTTGCGGTTTTGGTTTTGGTTGCGGAGATTAATGGAGTTGATATTCGGTTGGAGGATTTGGCGAAGGAGGTTCATGCTATTGTTTCGACTTGTAGAACTAGGTATAAAGAGCTTCTTGAGACGCTTGTGAATGTTGCGCAAGTGTTGCCTTGGGGGAAAGATATTACGAAGAAAAATATTATTAAGAATGCACCGTTTGTGATTCAGTATATGGAGAAGAAGTCTATGTCGAAGCCTGTTGAGAAGAGGAAGGATGTTGATCAGACTGGGTTGGATTTGGCTGATGTGGTTGATGAGTGCTTAACACAGGAGGGGCAATATGAGTATGGGGTTGATGGATTAGTTCACCGAAAAGATTCTCAGTATTTTTCATTGCAAAGTAATGGTGATAGAGAAGGTATTGTGGATGATGAAAGGTTACAGATTTCACCTGAATGTTTGTCTCTGATGTATGACAAATTTTTGAATGAGAATCGTGATGCTATGTCTTCAAGGAGTGCAAATGTTCAGAAACGGAAAAGGTTGGAACTTGATTTTCAGGAGTGGTGGAATGAAGAATCGGAACTGAGCAGAAAGCTTATACTGAAAGATTTAATAGAGAAGGATATTGGAGTGGAAACCATGCCACCCTCATTTGTCAATGGTCAATTGAAATGTAAAATGAGGCGAGAGAAGATCAATGCTGCAAAGAAGCGGATAAAAAGAATAACTCATCCATTACATGCTGATCTTGGTGATAGTGCAAATCTTGGCATTTTAGATAGCACTTGCACTGAGAGAAAGAAGAACAGAAGAGGAATGTCAGTTGATGGTATTGATTGGGAAGACTTGATTATTGAGACACTTGTTCTTCATCAAGTAAAGGATGAGGAAATTGAGAAAGGGCATTACAATACCTTACTAGGCCTATATGTGTTTAACTCTGGCGTTATATAA

Protein sequence

>Msa0241540

MSTSRRCINCSKTSFTRDDETGGSFCSSCGAEQPFDQFETYTIGINGPQGTFVHIGTSGSDEHALSMNEVANAVGCDVFELGKMVIRVVDYLDLRGSDFPDFDIVHLLKRSVDSCRCFREVDRSLVDRMKKQGVFLLQCAVKLFLSTGRRPLPLVVAVLVLVAEINGVDIRLEDLAKEVHAIVSTCRTRYKELLETLVNVAQVLPWGKDITKKNIIKNAPFVIQYMEKKSMSKPVEKRKDVDQTGLDLADVVDECLTQEGQYEYGVDGLVHRKDSQYFSLQSNGDREGIVDDERLQISPECLSLMYDKFLNENRDAMSSRSANVQKRKRLELDFQEWWNEESELSRKLILKDLIEKDIGVETMPPSFVNGQLKCKMRREKINAAKKRIKRITHPLHADLGDSANLGILDSTCTERKKNRRGMSVDGIDWEDLIIETLVLHQVKDEEIEKGHYNTLLGLYVFNSGVI*