AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1125470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1125470 MtrunA17_Chr7g0266301 96.078 153 6 0 1 153 1 153 1.29e-105 299
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1125470 AT5G15770.1 71.724 145 41 0 7 151 3 147 8.98e-73 216

Find 92 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAACTATCTTATTATTT+TGG 0.145935 7_3:-76995130 Msa1125470:three_prime_UTR
ATAGGACAAGGTTGTCTTTA+TGG 0.149759 7_3:-76995733 Msa1125470:three_prime_UTR
CCCCGTTGCAATAATCTTTC+CGG 0.199227 7_3:+76996817 None:intergenic
TGGTGGGTTGGACATTATTC+TGG 0.237754 7_3:-76995194 Msa1125470:three_prime_UTR
ATTCTTTGTTACAGCTCTTA+TGG 0.246528 7_3:-76995396 Msa1125470:three_prime_UTR
GTCTGTAATCTCTAATCTTC+TGG 0.252175 7_3:+76996979 None:intergenic
AGTACTTCAAGATGTCTTTA+AGG 0.262133 7_3:-76996108 Msa1125470:three_prime_UTR
AAAGGCATTGAAAGAATAAA+AGG 0.271574 7_3:+76996273 None:intergenic
AATTTGCCTGTTCAATGATT+TGG 0.272978 7_3:-76995463 Msa1125470:three_prime_UTR
CTTGAAGTACTTACGGAAAT+AGG 0.282874 7_3:+76996120 None:intergenic
CAGCAGTACATGTTCCTTCC+TGG 0.283965 7_3:-76995312 Msa1125470:three_prime_UTR
CTCTTATGGTACATTTGAAA+TGG 0.294554 7_3:-76995382 Msa1125470:three_prime_UTR
TCGTTCTGTTGGGTGTTATA+AGG 0.300594 7_3:-76996663 Msa1125470:CDS
AATGGGACCTTGATGCTCTT+TGG 0.301050 7_3:-76995364 Msa1125470:three_prime_UTR
TCCATGATTATGTCATTATA+CGG 0.317864 7_3:+76995251 None:intergenic
TTCAATGATTTGGGTGCTTA+AGG 0.318125 7_3:-76995453 Msa1125470:three_prime_UTR
ATTTGCCTGTTCAATGATTT+GGG 0.332911 7_3:-76995462 Msa1125470:three_prime_UTR
TCTTGATTCTTCTATTAAAC+AGG 0.346474 7_3:-76995219 Msa1125470:three_prime_UTR
TAAGAAATTGTGGTAAAGTT+GGG 0.348212 7_3:-76996769 Msa1125470:CDS
GGTTTACTAGATTGAGTTGA+TGG 0.350822 7_3:-76995291 Msa1125470:three_prime_UTR
TTAAGAAATTGTGGTAAAGT+TGG 0.366943 7_3:-76996770 Msa1125470:CDS
ACCGATCATGCTCGTTCTGT+TGG 0.371791 7_3:-76996674 Msa1125470:CDS
AGTGCTCGTGGGAAACAATT+GGG 0.376890 7_3:-76996719 Msa1125470:CDS
TCCATTTATTACAAAAGTTA+AGG 0.378259 7_3:-76995496 Msa1125470:three_prime_UTR
ACCGGAAAGATTATTGCAAC+GGG 0.406061 7_3:-76996818 Msa1125470:CDS
GACTAAACAAGCACATGTTT+CGG 0.406211 7_3:+76995831 None:intergenic
TCTGTTATTTACATGTGTTA+TGG 0.410531 7_3:-76995949 Msa1125470:three_prime_UTR
ATGCTCTTTGGAAATGAAAT+CGG 0.416361 7_3:-76995352 Msa1125470:three_prime_UTR
GTTATTGAAGATGAGATTAC+CGG 0.417687 7_3:-76996836 Msa1125470:CDS
AAGTGCTCGTGGGAAACAAT+TGG 0.427736 7_3:-76996720 Msa1125470:CDS
CTCACTGTTATCTGTACTCT+TGG 0.434639 7_3:-76995886 Msa1125470:three_prime_UTR
GCTATTGTAGCCTGACCTCT+TGG 0.434948 7_3:-76995864 Msa1125470:three_prime_UTR
TAATCTTTCACTAAAAGAAA+TGG 0.436591 7_3:+76996024 None:intergenic
AACATTATTCGTAGTACATA+AGG 0.443215 7_3:+76996052 None:intergenic
CCGATCATGCTCGTTCTGTT+GGG 0.443895 7_3:-76996673 Msa1125470:CDS
GTTGTGCATAGTGTTCATTT+TGG 0.445522 7_3:-76996144 Msa1125470:three_prime_UTR
CCATTGATGGTAGTTAATAA+AGG 0.447441 7_3:+76996255 None:intergenic
AGTCTCTGATAAGGAATTTG+AGG 0.451854 7_3:-76996906 Msa1125470:CDS
GATCAGAATTACAGCTGAAC+CGG 0.453557 7_3:+76995686 None:intergenic
TCTTATGGTACATTTGAAAT+GGG 0.455229 7_3:-76995381 Msa1125470:three_prime_UTR
AAGACATCTTGAAGTACTTA+CGG 0.459475 7_3:+76996113 None:intergenic
CCTTTATTAACTACCATCAA+TGG 0.464898 7_3:-76996255 Msa1125470:CDS
TTGTGATTCAGTCTCTGATA+AGG 0.468883 7_3:-76996915 Msa1125470:CDS
AAGCACCCAAATCATTGAAC+AGG 0.470933 7_3:+76995457 None:intergenic
TTTCGAGAGGTTGATTCACT+TGG 0.471380 7_3:-76996878 Msa1125470:CDS
ATGAACACTATGCACAACTC+TGG 0.493471 7_3:+76996149 None:intergenic
CGATTGCAGTGTTGAGAACA+AGG 0.494534 7_3:-76996633 Msa1125470:CDS
CTATGAGAAATGTGGTTTCA+AGG 0.496011 7_3:-76996606 Msa1125470:CDS
TTCTATTAAACAGGTGTGGT+GGG 0.498747 7_3:-76995210 Msa1125470:three_prime_UTR
ATTAAACAGGTGTGGTGGGT+TGG 0.504335 7_3:-76995206 Msa1125470:three_prime_UTR
CTTCTATTAAACAGGTGTGG+TGG 0.504663 7_3:-76995211 Msa1125470:three_prime_UTR
TTTGATAAGTTGATTAACAT+AGG 0.509680 7_3:-76995751 Msa1125470:three_prime_UTR
GTACATAAGGCGATGTATGA+TGG 0.511132 7_3:+76996065 None:intergenic
GAATTATGAGGACAAGCATA+TGG 0.517162 7_3:-76995431 Msa1125470:three_prime_UTR
TTGCACATAGCCAAGAGGTC+AGG 0.517249 7_3:+76995854 None:intergenic
ACCGTATAATGACATAATCA+TGG 0.518108 7_3:-76995252 Msa1125470:three_prime_UTR
CCCAACAGAACGAGCATGAT+CGG 0.532044 7_3:+76996673 None:intergenic
GAACTGGTGGCGTCAATATG+TGG 0.532781 7_3:+76995784 None:intergenic
TCAACTGCGACAATATTTGT+AGG 0.535633 7_3:-76995610 Msa1125470:three_prime_UTR
GTCATAGAACTCTAGAAAGC+AGG 0.537605 7_3:+76996198 None:intergenic
TTTATTACAAAAGTTAAGGA+AGG 0.538052 7_3:-76995492 Msa1125470:three_prime_UTR
TTCATTTCCAAAGAGCATCA+AGG 0.542913 7_3:+76995357 None:intergenic
TACCGGAAAGATTATTGCAA+CGG 0.546187 7_3:-76996819 Msa1125470:CDS
GTTTACTAGATTGAGTTGAT+GGG 0.550046 7_3:-76995290 Msa1125470:three_prime_UTR
AGCTGTAACAAAGAATTTCG+AGG 0.550946 7_3:+76995403 None:intergenic
ACAATGGTAGGAGCCATTGA+TGG 0.564879 7_3:+76996242 None:intergenic
CAAGGAGAAAGAAGTTCAGA+TGG 0.566779 7_3:-76996588 Msa1125470:CDS
ATTCTTCTATTAAACAGGTG+TGG 0.567164 7_3:-76995214 Msa1125470:three_prime_UTR
AATGAAATCGGTAGTGTGGT+AGG 0.569963 7_3:-76995340 Msa1125470:three_prime_UTR
AACTGGTGGCGTCAATATGT+GGG 0.574135 7_3:+76995785 None:intergenic
CAAACATCCACTACAATGGT+AGG 0.582996 7_3:+76996230 None:intergenic
TGGGTGCTTAAGGAATTATG+AGG 0.585630 7_3:-76995443 Msa1125470:three_prime_UTR
GACAATATTTGTAGGACGGA+GGG 0.592262 7_3:-76995602 Msa1125470:three_prime_UTR
AATGGCTCCTACCATTGTAG+TGG 0.602674 7_3:-76996237 Msa1125470:CDS
TCAACTCAATCTAGTAAACC+AGG 0.605659 7_3:+76995294 None:intergenic
AATGCATTAAGTATTGAGAC+CGG 0.605727 7_3:-76995705 Msa1125470:three_prime_UTR
GTTGTGGATTCAAGTGCTCG+TGG 0.610212 7_3:-76996731 Msa1125470:CDS
ATTTGAGGATCGATTTCGAG+AGG 0.616403 7_3:-76996891 Msa1125470:CDS
GCATATAGAAGATGTTGTTG+TGG 0.621571 7_3:-76996747 Msa1125470:CDS
GTGCTCGTGGGAAACAATTG+GGG 0.624260 7_3:-76996718 Msa1125470:CDS
TGGAAATGAAATCGGTAGTG+TGG 0.625238 7_3:-76995344 Msa1125470:three_prime_UTR
CGACAATATTTGTAGGACGG+AGG 0.628838 7_3:-76995603 Msa1125470:three_prime_UTR
CTGCGACAATATTTGTAGGA+CGG 0.635219 7_3:-76995606 Msa1125470:three_prime_UTR
GCATGAAAAGCAGTTCATAG+AGG 0.636091 7_3:-76995532 Msa1125470:three_prime_UTR
CTCAATCTAGTAAACCAGGA+AGG 0.641311 7_3:+76995298 None:intergenic
TTGTGGATTCAAGTGCTCGT+GGG 0.642750 7_3:-76996730 Msa1125470:CDS
AAGTTGATTAACATAGGACA+AGG 0.658019 7_3:-76995745 Msa1125470:three_prime_UTR
CTTGCAAACATCCACTACAA+TGG 0.659022 7_3:+76996226 None:intergenic
AAGGTGTTCTATGAGAAATG+TGG 0.671486 7_3:-76996614 Msa1125470:CDS
TTCGGTTGCACATAGCCAAG+AGG 0.685196 7_3:+76995849 None:intergenic
TTAGAAGATGCAAAACAGTG+AGG 0.719583 7_3:-76997017 None:intergenic
CCGGAAAGATTATTGCAACG+GGG 0.727047 7_3:-76996817 Msa1125470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAAATTTTTAAGAAATTG+TGG - chr7_3:76995343-76995362 Msa1125470:three_prime_UTR 15.0%
!!! ATTTTTTAAAGATTGATATC+AGG + chr7_3:76995953-76995972 None:intergenic 15.0%
!! AAATAAAAAAGGACTATATA+GGG + chr7_3:76996972-76996991 None:intergenic 15.0%
!! AAAATAAAAAAGGACTATAT+AGG + chr7_3:76996973-76996992 None:intergenic 15.0%
!! GATAGTTCAAAAAATAAAAA+AGG + chr7_3:76996983-76997002 None:intergenic 15.0%
!!! TTTGAACTATCTTATTATTT+TGG - chr7_3:76996992-76997011 Msa1125470:CDS 15.0%
!!! AAGAAATTTTTAAGAAATTG+TGG - chr7_3:76995343-76995362 Msa1125470:three_prime_UTR 15.0%
!!! ATTTTTTAAAGATTGATATC+AGG + chr7_3:76995953-76995972 None:intergenic 15.0%
!! AAATAAAAAAGGACTATATA+GGG + chr7_3:76996972-76996991 None:intergenic 15.0%
!! AAAATAAAAAAGGACTATAT+AGG + chr7_3:76996973-76996992 None:intergenic 15.0%
!! GATAGTTCAAAAAATAAAAA+AGG + chr7_3:76996983-76997002 None:intergenic 15.0%
!!! TTTGAACTATCTTATTATTT+TGG - chr7_3:76996992-76997011 Msa1125470:CDS 15.0%
!! TAATCTTTCACTAAAAGAAA+TGG + chr7_3:76996101-76996120 None:intergenic 20.0%
!!! TTTGATAAGTTGATTAACAT+AGG - chr7_3:76996371-76996390 Msa1125470:intron 20.0%
!!! TTTTCTTAATTTGTGTCAAA+TGG - chr7_3:76996489-76996508 Msa1125470:intron 20.0%
!! TCCATTTATTACAAAAGTTA+AGG - chr7_3:76996626-76996645 Msa1125470:CDS 20.0%
!!! TCCTTAACTTTTGTAATAAA+TGG + chr7_3:76996630-76996649 None:intergenic 20.0%
!! TTTATTACAAAAGTTAAGGA+AGG - chr7_3:76996630-76996649 Msa1125470:CDS 20.0%
!! TAATCTTTCACTAAAAGAAA+TGG + chr7_3:76996101-76996120 None:intergenic 20.0%
!!! TTTGATAAGTTGATTAACAT+AGG - chr7_3:76996371-76996390 Msa1125470:intron 20.0%
!!! TTTTCTTAATTTGTGTCAAA+TGG - chr7_3:76996489-76996508 Msa1125470:intron 20.0%
!! TCCATTTATTACAAAAGTTA+AGG - chr7_3:76996626-76996645 Msa1125470:CDS 20.0%
!!! TCCTTAACTTTTGTAATAAA+TGG + chr7_3:76996630-76996649 None:intergenic 20.0%
!! TTTATTACAAAAGTTAAGGA+AGG - chr7_3:76996630-76996649 Msa1125470:CDS 20.0%
! TTAAGAAATTGTGGTAAAGT+TGG - chr7_3:76995352-76995371 Msa1125470:three_prime_UTR 25.0%
! TAAGAAATTGTGGTAAAGTT+GGG - chr7_3:76995353-76995372 Msa1125470:three_prime_UTR 25.0%
!!! TTCTTTTATTTCTCATGTGA+TGG - chr7_3:76995608-76995627 Msa1125470:three_prime_UTR 25.0%
!!! AAAGGCATTGAAAGAATAAA+AGG + chr7_3:76995852-76995871 None:intergenic 25.0%
! AACATTATTCGTAGTACATA+AGG + chr7_3:76996073-76996092 None:intergenic 25.0%
!! TCTGTTATTTACATGTGTTA+TGG - chr7_3:76996173-76996192 Msa1125470:three_prime_UTR 25.0%
!! TCTTATGGTACATTTGAAAT+GGG - chr7_3:76996741-76996760 Msa1125470:CDS 25.0%
! TCCATGATTATGTCATTATA+CGG + chr7_3:76996874-76996893 None:intergenic 25.0%
! TCTTGATTCTTCTATTAAAC+AGG - chr7_3:76996903-76996922 Msa1125470:CDS 25.0%
! TTAAGAAATTGTGGTAAAGT+TGG - chr7_3:76995352-76995371 Msa1125470:three_prime_UTR 25.0%
! TAAGAAATTGTGGTAAAGTT+GGG - chr7_3:76995353-76995372 Msa1125470:three_prime_UTR 25.0%
!!! TTCTTTTATTTCTCATGTGA+TGG - chr7_3:76995608-76995627 Msa1125470:three_prime_UTR 25.0%
!!! AAAGGCATTGAAAGAATAAA+AGG + chr7_3:76995852-76995871 None:intergenic 25.0%
! AACATTATTCGTAGTACATA+AGG + chr7_3:76996073-76996092 None:intergenic 25.0%
!! TCTGTTATTTACATGTGTTA+TGG - chr7_3:76996173-76996192 Msa1125470:three_prime_UTR 25.0%
!! TCTTATGGTACATTTGAAAT+GGG - chr7_3:76996741-76996760 Msa1125470:CDS 25.0%
! TCCATGATTATGTCATTATA+CGG + chr7_3:76996874-76996893 None:intergenic 25.0%
! TCTTGATTCTTCTATTAAAC+AGG - chr7_3:76996903-76996922 Msa1125470:CDS 25.0%
GAGATTACAGACAAGAAAAA+AGG - chr7_3:76995154-76995173 Msa1125470:three_prime_UTR 30.0%
GTTATTGAAGATGAGATTAC+CGG - chr7_3:76995286-76995305 Msa1125470:three_prime_UTR 30.0%
ATTCGCGAAAAGAAAAAACA+AGG + chr7_3:76995582-76995601 None:intergenic 30.0%
! ACGTTTTCTCAAATTATTGC+TGG - chr7_3:76995713-76995732 Msa1125470:three_prime_UTR 30.0%
AACTGCAAACAAACAACAAA+CGG + chr7_3:76995821-76995840 None:intergenic 30.0%
! CCATTGATGGTAGTTAATAA+AGG + chr7_3:76995870-76995889 None:intergenic 30.0%
CCTTTATTAACTACCATCAA+TGG - chr7_3:76995867-76995886 Msa1125470:three_prime_UTR 30.0%
! AAGACATCTTGAAGTACTTA+CGG + chr7_3:76996012-76996031 None:intergenic 30.0%
AGTACTTCAAGATGTCTTTA+AGG - chr7_3:76996014-76996033 Msa1125470:three_prime_UTR 30.0%
GTCTTAAAAGCAGAAAAATG+AGG - chr7_3:76996311-76996330 Msa1125470:intron 30.0%
! AAGTTGATTAACATAGGACA+AGG - chr7_3:76996377-76996396 Msa1125470:intron 30.0%
!! AATGCATTAAGTATTGAGAC+CGG - chr7_3:76996417-76996436 Msa1125470:intron 30.0%
TCATGCCTATATAAAAACAG+AGG - chr7_3:76996556-76996575 Msa1125470:intron 30.0%
!!! TCCATCCTCTGTTTTTATAT+AGG + chr7_3:76996564-76996583 None:intergenic 30.0%
ATATAAAAACAGAGGATGGA+AGG - chr7_3:76996564-76996583 Msa1125470:intron 30.0%
AATTTGCCTGTTCAATGATT+TGG - chr7_3:76996659-76996678 Msa1125470:CDS 30.0%
ATTTGCCTGTTCAATGATTT+GGG - chr7_3:76996660-76996679 Msa1125470:CDS 30.0%
ATTCTTTGTTACAGCTCTTA+TGG - chr7_3:76996726-76996745 Msa1125470:CDS 30.0%
CTCTTATGGTACATTTGAAA+TGG - chr7_3:76996740-76996759 Msa1125470:CDS 30.0%
! ATGCTCTTTGGAAATGAAAT+CGG - chr7_3:76996770-76996789 Msa1125470:CDS 30.0%
!! GTTTACTAGATTGAGTTGAT+GGG - chr7_3:76996832-76996851 Msa1125470:CDS 30.0%
ACCGTATAATGACATAATCA+TGG - chr7_3:76996870-76996889 Msa1125470:CDS 30.0%
ATTCTTCTATTAAACAGGTG+TGG - chr7_3:76996908-76996927 Msa1125470:CDS 30.0%
GAGATTACAGACAAGAAAAA+AGG - chr7_3:76995154-76995173 Msa1125470:three_prime_UTR 30.0%
GTTATTGAAGATGAGATTAC+CGG - chr7_3:76995286-76995305 Msa1125470:three_prime_UTR 30.0%
ATTCGCGAAAAGAAAAAACA+AGG + chr7_3:76995582-76995601 None:intergenic 30.0%
! ACGTTTTCTCAAATTATTGC+TGG - chr7_3:76995713-76995732 Msa1125470:three_prime_UTR 30.0%
AACTGCAAACAAACAACAAA+CGG + chr7_3:76995821-76995840 None:intergenic 30.0%
! CCATTGATGGTAGTTAATAA+AGG + chr7_3:76995870-76995889 None:intergenic 30.0%
CCTTTATTAACTACCATCAA+TGG - chr7_3:76995867-76995886 Msa1125470:three_prime_UTR 30.0%
! AAGACATCTTGAAGTACTTA+CGG + chr7_3:76996012-76996031 None:intergenic 30.0%
AGTACTTCAAGATGTCTTTA+AGG - chr7_3:76996014-76996033 Msa1125470:three_prime_UTR 30.0%
GTCTTAAAAGCAGAAAAATG+AGG - chr7_3:76996311-76996330 Msa1125470:intron 30.0%
! AAGTTGATTAACATAGGACA+AGG - chr7_3:76996377-76996396 Msa1125470:intron 30.0%
!! AATGCATTAAGTATTGAGAC+CGG - chr7_3:76996417-76996436 Msa1125470:intron 30.0%
TCATGCCTATATAAAAACAG+AGG - chr7_3:76996556-76996575 Msa1125470:intron 30.0%
!!! TCCATCCTCTGTTTTTATAT+AGG + chr7_3:76996564-76996583 None:intergenic 30.0%
ATATAAAAACAGAGGATGGA+AGG - chr7_3:76996564-76996583 Msa1125470:intron 30.0%
AATTTGCCTGTTCAATGATT+TGG - chr7_3:76996659-76996678 Msa1125470:CDS 30.0%
ATTTGCCTGTTCAATGATTT+GGG - chr7_3:76996660-76996679 Msa1125470:CDS 30.0%
ATTCTTTGTTACAGCTCTTA+TGG - chr7_3:76996726-76996745 Msa1125470:CDS 30.0%
CTCTTATGGTACATTTGAAA+TGG - chr7_3:76996740-76996759 Msa1125470:CDS 30.0%
! ATGCTCTTTGGAAATGAAAT+CGG - chr7_3:76996770-76996789 Msa1125470:CDS 30.0%
!! GTTTACTAGATTGAGTTGAT+GGG - chr7_3:76996832-76996851 Msa1125470:CDS 30.0%
ACCGTATAATGACATAATCA+TGG - chr7_3:76996870-76996889 Msa1125470:CDS 30.0%
ATTCTTCTATTAAACAGGTG+TGG - chr7_3:76996908-76996927 Msa1125470:CDS 30.0%
GTCTGTAATCTCTAATCTTC+TGG + chr7_3:76995146-76995165 None:intergenic 35.0%
TTGTGATTCAGTCTCTGATA+AGG - chr7_3:76995207-76995226 Msa1125470:three_prime_UTR 35.0%
AGTCTCTGATAAGGAATTTG+AGG - chr7_3:76995216-76995235 Msa1125470:three_prime_UTR 35.0%
TACCGGAAAGATTATTGCAA+CGG - chr7_3:76995303-76995322 Msa1125470:three_prime_UTR 35.0%
GCATATAGAAGATGTTGTTG+TGG - chr7_3:76995375-76995394 Msa1125470:three_prime_UTR 35.0%
! AAGGTGTTCTATGAGAAATG+TGG - chr7_3:76995508-76995527 Msa1125470:three_prime_UTR 35.0%
CTATGAGAAATGTGGTTTCA+AGG - chr7_3:76995516-76995535 Msa1125470:three_prime_UTR 35.0%
TAAACTACATGTGTCATGTC+CGG + chr7_3:76995674-76995693 None:intergenic 35.0%
GATAGTATCAATTGCTGAAG+AGG + chr7_3:76995789-76995808 None:intergenic 35.0%
! GTTGTGCATAGTGTTCATTT+TGG - chr7_3:76995978-76995997 Msa1125470:three_prime_UTR 35.0%
! CTTGAAGTACTTACGGAAAT+AGG + chr7_3:76996005-76996024 None:intergenic 35.0%
GACTAAACAAGCACATGTTT+CGG + chr7_3:76996294-76996313 None:intergenic 35.0%
ATCAAAAACTACAGCTGAAC+TGG + chr7_3:76996357-76996376 None:intergenic 35.0%
ATAGGACAAGGTTGTCTTTA+TGG - chr7_3:76996389-76996408 Msa1125470:intron 35.0%
TCAACTGCGACAATATTTGT+AGG - chr7_3:76996512-76996531 Msa1125470:intron 35.0%
GCCTATATAAAAACAGAGGA+TGG - chr7_3:76996560-76996579 Msa1125470:intron 35.0%
! TTCAATGATTTGGGTGCTTA+AGG - chr7_3:76996669-76996688 Msa1125470:CDS 35.0%
GAATTATGAGGACAAGCATA+TGG - chr7_3:76996691-76996710 Msa1125470:CDS 35.0%
AGCTGTAACAAAGAATTTCG+AGG + chr7_3:76996722-76996741 None:intergenic 35.0%
!! TTCATTTCCAAAGAGCATCA+AGG + chr7_3:76996768-76996787 None:intergenic 35.0%
TCAACTCAATCTAGTAAACC+AGG + chr7_3:76996831-76996850 None:intergenic 35.0%
!! GGTTTACTAGATTGAGTTGA+TGG - chr7_3:76996831-76996850 Msa1125470:CDS 35.0%
TTCTATTAAACAGGTGTGGT+GGG - chr7_3:76996912-76996931 Msa1125470:CDS 35.0%
GTCTGTAATCTCTAATCTTC+TGG + chr7_3:76995146-76995165 None:intergenic 35.0%
TTGTGATTCAGTCTCTGATA+AGG - chr7_3:76995207-76995226 Msa1125470:three_prime_UTR 35.0%
AGTCTCTGATAAGGAATTTG+AGG - chr7_3:76995216-76995235 Msa1125470:three_prime_UTR 35.0%
TACCGGAAAGATTATTGCAA+CGG - chr7_3:76995303-76995322 Msa1125470:three_prime_UTR 35.0%
GCATATAGAAGATGTTGTTG+TGG - chr7_3:76995375-76995394 Msa1125470:three_prime_UTR 35.0%
! AAGGTGTTCTATGAGAAATG+TGG - chr7_3:76995508-76995527 Msa1125470:three_prime_UTR 35.0%
CTATGAGAAATGTGGTTTCA+AGG - chr7_3:76995516-76995535 Msa1125470:three_prime_UTR 35.0%
TAAACTACATGTGTCATGTC+CGG + chr7_3:76995674-76995693 None:intergenic 35.0%
GATAGTATCAATTGCTGAAG+AGG + chr7_3:76995789-76995808 None:intergenic 35.0%
! GTTGTGCATAGTGTTCATTT+TGG - chr7_3:76995978-76995997 Msa1125470:three_prime_UTR 35.0%
! CTTGAAGTACTTACGGAAAT+AGG + chr7_3:76996005-76996024 None:intergenic 35.0%
GACTAAACAAGCACATGTTT+CGG + chr7_3:76996294-76996313 None:intergenic 35.0%
ATCAAAAACTACAGCTGAAC+TGG + chr7_3:76996357-76996376 None:intergenic 35.0%
ATAGGACAAGGTTGTCTTTA+TGG - chr7_3:76996389-76996408 Msa1125470:intron 35.0%
TCAACTGCGACAATATTTGT+AGG - chr7_3:76996512-76996531 Msa1125470:intron 35.0%
GCCTATATAAAAACAGAGGA+TGG - chr7_3:76996560-76996579 Msa1125470:intron 35.0%
! TTCAATGATTTGGGTGCTTA+AGG - chr7_3:76996669-76996688 Msa1125470:CDS 35.0%
GAATTATGAGGACAAGCATA+TGG - chr7_3:76996691-76996710 Msa1125470:CDS 35.0%
AGCTGTAACAAAGAATTTCG+AGG + chr7_3:76996722-76996741 None:intergenic 35.0%
!! TTCATTTCCAAAGAGCATCA+AGG + chr7_3:76996768-76996787 None:intergenic 35.0%
TCAACTCAATCTAGTAAACC+AGG + chr7_3:76996831-76996850 None:intergenic 35.0%
!! GGTTTACTAGATTGAGTTGA+TGG - chr7_3:76996831-76996850 Msa1125470:CDS 35.0%
TTCTATTAAACAGGTGTGGT+GGG - chr7_3:76996912-76996931 Msa1125470:CDS 35.0%
! ATTTGAGGATCGATTTCGAG+AGG - chr7_3:76995231-76995250 Msa1125470:three_prime_UTR 40.0%
! TTTCGAGAGGTTGATTCACT+TGG - chr7_3:76995244-76995263 Msa1125470:three_prime_UTR 40.0%
ACCGGAAAGATTATTGCAAC+GGG - chr7_3:76995304-76995323 Msa1125470:three_prime_UTR 40.0%
! TCGTTCTGTTGGGTGTTATA+AGG - chr7_3:76995459-76995478 Msa1125470:three_prime_UTR 40.0%
CAAGGAGAAAGAAGTTCAGA+TGG - chr7_3:76995534-76995553 Msa1125470:three_prime_UTR 40.0%
! GGTTCTAGTCAGATTGAACA+TGG - chr7_3:76995629-76995648 Msa1125470:three_prime_UTR 40.0%
CAAACATCCACTACAATGGT+AGG + chr7_3:76995895-76995914 None:intergenic 40.0%
CTTGCAAACATCCACTACAA+TGG + chr7_3:76995899-76995918 None:intergenic 40.0%
! GTCATAGAACTCTAGAAAGC+AGG + chr7_3:76995927-76995946 None:intergenic 40.0%
ATGAACACTATGCACAACTC+TGG + chr7_3:76995976-76995995 None:intergenic 40.0%
GTACATAAGGCGATGTATGA+TGG + chr7_3:76996060-76996079 None:intergenic 40.0%
CTCACTGTTATCTGTACTCT+TGG - chr7_3:76996236-76996255 Msa1125470:CDS 40.0%
AAAAACTACAGCTGAACTGG+TGG + chr7_3:76996354-76996373 None:intergenic 40.0%
GATCAGAATTACAGCTGAAC+CGG + chr7_3:76996439-76996458 None:intergenic 40.0%
CTGCGACAATATTTGTAGGA+CGG - chr7_3:76996516-76996535 Msa1125470:intron 40.0%
GACAATATTTGTAGGACGGA+GGG - chr7_3:76996520-76996539 Msa1125470:intron 40.0%
AAAAACAGAGGATGGAAGGA+TGG - chr7_3:76996568-76996587 Msa1125470:intron 40.0%
GCATGAAAAGCAGTTCATAG+AGG - chr7_3:76996590-76996609 Msa1125470:CDS 40.0%
AAGCACCCAAATCATTGAAC+AGG + chr7_3:76996668-76996687 None:intergenic 40.0%
TGGGTGCTTAAGGAATTATG+AGG - chr7_3:76996679-76996698 Msa1125470:CDS 40.0%
TGGAAATGAAATCGGTAGTG+TGG - chr7_3:76996778-76996797 Msa1125470:CDS 40.0%
AATGAAATCGGTAGTGTGGT+AGG - chr7_3:76996782-76996801 Msa1125470:CDS 40.0%
CTCAATCTAGTAAACCAGGA+AGG + chr7_3:76996827-76996846 None:intergenic 40.0%
CTTCTATTAAACAGGTGTGG+TGG - chr7_3:76996911-76996930 Msa1125470:CDS 40.0%
! ATTTGAGGATCGATTTCGAG+AGG - chr7_3:76995231-76995250 Msa1125470:three_prime_UTR 40.0%
! TTTCGAGAGGTTGATTCACT+TGG - chr7_3:76995244-76995263 Msa1125470:three_prime_UTR 40.0%
ACCGGAAAGATTATTGCAAC+GGG - chr7_3:76995304-76995323 Msa1125470:three_prime_UTR 40.0%
! TCGTTCTGTTGGGTGTTATA+AGG - chr7_3:76995459-76995478 Msa1125470:three_prime_UTR 40.0%
CAAGGAGAAAGAAGTTCAGA+TGG - chr7_3:76995534-76995553 Msa1125470:three_prime_UTR 40.0%
! GGTTCTAGTCAGATTGAACA+TGG - chr7_3:76995629-76995648 Msa1125470:three_prime_UTR 40.0%
CAAACATCCACTACAATGGT+AGG + chr7_3:76995895-76995914 None:intergenic 40.0%
CTTGCAAACATCCACTACAA+TGG + chr7_3:76995899-76995918 None:intergenic 40.0%
! GTCATAGAACTCTAGAAAGC+AGG + chr7_3:76995927-76995946 None:intergenic 40.0%
ATGAACACTATGCACAACTC+TGG + chr7_3:76995976-76995995 None:intergenic 40.0%
GTACATAAGGCGATGTATGA+TGG + chr7_3:76996060-76996079 None:intergenic 40.0%
CTCACTGTTATCTGTACTCT+TGG - chr7_3:76996236-76996255 Msa1125470:CDS 40.0%
AAAAACTACAGCTGAACTGG+TGG + chr7_3:76996354-76996373 None:intergenic 40.0%
GATCAGAATTACAGCTGAAC+CGG + chr7_3:76996439-76996458 None:intergenic 40.0%
CTGCGACAATATTTGTAGGA+CGG - chr7_3:76996516-76996535 Msa1125470:intron 40.0%
GACAATATTTGTAGGACGGA+GGG - chr7_3:76996520-76996539 Msa1125470:intron 40.0%
AAAAACAGAGGATGGAAGGA+TGG - chr7_3:76996568-76996587 Msa1125470:intron 40.0%
GCATGAAAAGCAGTTCATAG+AGG - chr7_3:76996590-76996609 Msa1125470:CDS 40.0%
AAGCACCCAAATCATTGAAC+AGG + chr7_3:76996668-76996687 None:intergenic 40.0%
TGGGTGCTTAAGGAATTATG+AGG - chr7_3:76996679-76996698 Msa1125470:CDS 40.0%
TGGAAATGAAATCGGTAGTG+TGG - chr7_3:76996778-76996797 Msa1125470:CDS 40.0%
AATGAAATCGGTAGTGTGGT+AGG - chr7_3:76996782-76996801 Msa1125470:CDS 40.0%
CTCAATCTAGTAAACCAGGA+AGG + chr7_3:76996827-76996846 None:intergenic 40.0%
CTTCTATTAAACAGGTGTGG+TGG - chr7_3:76996911-76996930 Msa1125470:CDS 40.0%
CCCCGTTGCAATAATCTTTC+CGG + chr7_3:76995308-76995327 None:intergenic 45.0%
CCGGAAAGATTATTGCAACG+GGG - chr7_3:76995305-76995324 Msa1125470:three_prime_UTR 45.0%
TTGTGGATTCAAGTGCTCGT+GGG - chr7_3:76995392-76995411 Msa1125470:three_prime_UTR 45.0%
AAGTGCTCGTGGGAAACAAT+TGG - chr7_3:76995402-76995421 Msa1125470:three_prime_UTR 45.0%
AGTGCTCGTGGGAAACAATT+GGG - chr7_3:76995403-76995422 Msa1125470:three_prime_UTR 45.0%
! CGATTGCAGTGTTGAGAACA+AGG - chr7_3:76995489-76995508 Msa1125470:three_prime_UTR 45.0%
GTCAGATTGAACATGGTGTC+TGG - chr7_3:76995636-76995655 Msa1125470:three_prime_UTR 45.0%
TGTCTGGCAAATGTCAATGC+CGG - chr7_3:76995652-76995671 Msa1125470:three_prime_UTR 45.0%
ACAATGGTAGGAGCCATTGA+TGG + chr7_3:76995883-76995902 None:intergenic 45.0%
AATGGCTCCTACCATTGTAG+TGG - chr7_3:76995885-76995904 Msa1125470:three_prime_UTR 45.0%
! AACTGGTGGCGTCAATATGT+GGG + chr7_3:76996340-76996359 None:intergenic 45.0%
CGACAATATTTGTAGGACGG+AGG - chr7_3:76996519-76996538 Msa1125470:intron 45.0%
AATGGGACCTTGATGCTCTT+TGG - chr7_3:76996758-76996777 Msa1125470:CDS 45.0%
!! ATTAAACAGGTGTGGTGGGT+TGG - chr7_3:76996916-76996935 Msa1125470:CDS 45.0%
!! TGGTGGGTTGGACATTATTC+TGG - chr7_3:76996928-76996947 Msa1125470:CDS 45.0%
CCCCGTTGCAATAATCTTTC+CGG + chr7_3:76995308-76995327 None:intergenic 45.0%
CCGGAAAGATTATTGCAACG+GGG - chr7_3:76995305-76995324 Msa1125470:three_prime_UTR 45.0%
TTGTGGATTCAAGTGCTCGT+GGG - chr7_3:76995392-76995411 Msa1125470:three_prime_UTR 45.0%
AAGTGCTCGTGGGAAACAAT+TGG - chr7_3:76995402-76995421 Msa1125470:three_prime_UTR 45.0%
AGTGCTCGTGGGAAACAATT+GGG - chr7_3:76995403-76995422 Msa1125470:three_prime_UTR 45.0%
! CGATTGCAGTGTTGAGAACA+AGG - chr7_3:76995489-76995508 Msa1125470:three_prime_UTR 45.0%
GTCAGATTGAACATGGTGTC+TGG - chr7_3:76995636-76995655 Msa1125470:three_prime_UTR 45.0%
TGTCTGGCAAATGTCAATGC+CGG - chr7_3:76995652-76995671 Msa1125470:three_prime_UTR 45.0%
ACAATGGTAGGAGCCATTGA+TGG + chr7_3:76995883-76995902 None:intergenic 45.0%
AATGGCTCCTACCATTGTAG+TGG - chr7_3:76995885-76995904 Msa1125470:three_prime_UTR 45.0%
! AACTGGTGGCGTCAATATGT+GGG + chr7_3:76996340-76996359 None:intergenic 45.0%
CGACAATATTTGTAGGACGG+AGG - chr7_3:76996519-76996538 Msa1125470:intron 45.0%
AATGGGACCTTGATGCTCTT+TGG - chr7_3:76996758-76996777 Msa1125470:CDS 45.0%
!! ATTAAACAGGTGTGGTGGGT+TGG - chr7_3:76996916-76996935 Msa1125470:CDS 45.0%
!! TGGTGGGTTGGACATTATTC+TGG - chr7_3:76996928-76996947 Msa1125470:CDS 45.0%
GTTGTGGATTCAAGTGCTCG+TGG - chr7_3:76995391-76995410 Msa1125470:three_prime_UTR 50.0%
GTGCTCGTGGGAAACAATTG+GGG - chr7_3:76995404-76995423 Msa1125470:three_prime_UTR 50.0%
ACCGATCATGCTCGTTCTGT+TGG - chr7_3:76995448-76995467 Msa1125470:three_prime_UTR 50.0%
CCCAACAGAACGAGCATGAT+CGG + chr7_3:76995452-76995471 None:intergenic 50.0%
CCGATCATGCTCGTTCTGTT+GGG - chr7_3:76995449-76995468 Msa1125470:three_prime_UTR 50.0%
GCTATTGTAGCCTGACCTCT+TGG - chr7_3:76996258-76996277 Msa1125470:CDS 50.0%
TTGCACATAGCCAAGAGGTC+AGG + chr7_3:76996271-76996290 None:intergenic 50.0%
TTCGGTTGCACATAGCCAAG+AGG + chr7_3:76996276-76996295 None:intergenic 50.0%
! GAACTGGTGGCGTCAATATG+TGG + chr7_3:76996341-76996360 None:intergenic 50.0%
CAGCAGTACATGTTCCTTCC+TGG - chr7_3:76996810-76996829 Msa1125470:CDS 50.0%
GTTGTGGATTCAAGTGCTCG+TGG - chr7_3:76995391-76995410 Msa1125470:three_prime_UTR 50.0%
GTGCTCGTGGGAAACAATTG+GGG - chr7_3:76995404-76995423 Msa1125470:three_prime_UTR 50.0%
ACCGATCATGCTCGTTCTGT+TGG - chr7_3:76995448-76995467 Msa1125470:three_prime_UTR 50.0%
CCCAACAGAACGAGCATGAT+CGG + chr7_3:76995452-76995471 None:intergenic 50.0%
CCGATCATGCTCGTTCTGTT+GGG - chr7_3:76995449-76995468 Msa1125470:three_prime_UTR 50.0%
GCTATTGTAGCCTGACCTCT+TGG - chr7_3:76996258-76996277 Msa1125470:CDS 50.0%
TTGCACATAGCCAAGAGGTC+AGG + chr7_3:76996271-76996290 None:intergenic 50.0%
TTCGGTTGCACATAGCCAAG+AGG + chr7_3:76996276-76996295 None:intergenic 50.0%
! GAACTGGTGGCGTCAATATG+TGG + chr7_3:76996341-76996360 None:intergenic 50.0%
CAGCAGTACATGTTCCTTCC+TGG - chr7_3:76996810-76996829 Msa1125470:CDS 50.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 76995112 76997032 76995112 ID=Msa1125470;Name=Msa1125470
chr7_3 mRNA 76995112 76997032 76995112 ID=Msa1125470-mRNA-1;Parent=Msa1125470;Name=Msa1125470-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0.5|1|1|1|2|1097|181
chr7_3 exon 76995112 76996305 76995112 ID=Msa1125470-mRNA-1:exon:21177;Parent=Msa1125470-mRNA-1
chr7_3 exon 76996584 76997032 76996584 ID=Msa1125470-mRNA-1:exon:21176;Parent=Msa1125470-mRNA-1
chr7_3 CDS 76996584 76997032 76996584 ID=Msa1125470-mRNA-1:cds;Parent=Msa1125470-mRNA-1
chr7_3 CDS 76996209 76996305 76996209 ID=Msa1125470-mRNA-1:cds;Parent=Msa1125470-mRNA-1
chr7_3 three_prime_UTR 76995112 76996208 76995112 ID=Msa1125470-mRNA-1:three_prime_utr;Parent=Msa1125470-mRNA-1
Gene Sequence

>Msa1125470

ATGCAAAACAGTGAGGAACAAAAGTATAGAGCCAGAAGATTAGAGATTACAGACAAGAAAAAAGGTTTCATAGAATTACTACAACAGCTTAGCGTTTGTGATTCAGTCTCTGATAAGGAATTTGAGGATCGATTTCGAGAGGTTGATTCACTTGGAGATGATCATGTTATATGTGTTATTGAAGATGAGATTACCGGAAAGATTATTGCAACGGGGAGTGTGTTTATTGAGAAGAAATTTTTAAGAAATTGTGGTAAAGTTGGGCATATAGAAGATGTTGTTGTGGATTCAAGTGCTCGTGGGAAACAATTGGGGAAGAAAGTAATTAACTTTCTTACCGATCATGCTCGTTCTGTTGGGTGTTATAAGGTAATTCTCGATTGCAGTGTTGAGAACAAGGTGTTCTATGAGAAATGTGGTTTCAAGGAGAAAGAAGTTCAGATGGCTATTTATATAATTCCTTTTATTCTTTCAATGCCTTTATTAACTACCATCAATGGCTCCTACCATTGTAGTGGATGTTTGCAAGAGCAACCTGCTTTCTAG

Protein sequence

>Msa1125470

MQNSEEQKYRARRLEITDKKKGFIELLQQLSVCDSVSDKEFEDRFREVDSLGDDHVICVIEDEITGKIIATGSVFIEKKFLRNCGKVGHIEDVVVDSSARGKQLGKKVINFLTDHARSVGCYKVILDCSVENKVFYEKCGFKEKEVQMAIYIIPFILSMPLLTTINGSYHCSGCLQEQPAF*