AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0796440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0796440 MtrunA17_Chr5g0399351 97.443 352 8 1 52 403 1 351 0.0 676
Msa0796440 MtrunA17_Chr2g0317181 85.227 88 13 0 272 359 4 91 1.37e-42 144
Msa0796440 MtrunA17_Chr2g0317191 63.636 99 34 2 55 151 5 103 4.78e-28 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0796440 AT5G05210.1 49.459 370 132 8 74 399 24 382 2.07e-91 281
Msa0796440 AT5G05210.2 49.459 370 132 8 74 399 16 374 2.24e-91 280
Msa0796440 AT2G27750.1 52.571 175 62 4 220 390 24 181 1.25e-44 153

Find 113 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTAACCCATGTTATATTT+TGG 0.153792 5_3:-8483334 Msa0796440:three_prime_UTR
GTGATTGGGATTTAGAAATT+AGG 0.196108 5_3:+8485389 None:intergenic
TCACTAGAATACAGGCATTT+TGG 0.215580 5_3:-8483275 Msa0796440:three_prime_UTR
GCGGTGGATGACGGCGGGTT+CGG 0.215825 5_3:+8485343 None:intergenic
TAACGAGAAACCGTGGTTTC+AGG 0.232330 5_3:-8484375 Msa0796440:CDS
GCCTGTATTCTAGTGATAAA+TGG 0.241539 5_3:+8483282 None:intergenic
TGAACTTCTCAAGAAGAGTT+TGG 0.258601 5_3:-8484249 Msa0796440:CDS
AGAAGTTCAAGTGTGGTTAC+AGG 0.290349 5_3:+8484263 None:intergenic
CGGTGGATGACGGCGGGTTC+GGG 0.307231 5_3:+8485344 None:intergenic
TGATTGGGATTTAGAAATTA+GGG 0.336302 5_3:+8485390 None:intergenic
TATCATCATGGCAGATTTAC+CGG 0.336518 5_3:-8483208 Msa0796440:three_prime_UTR
GCAGCAATGGACAGAGCTTC+AGG 0.337717 5_3:-8483744 Msa0796440:CDS
AGTGTGGTTACAGGCTTCTC+AGG 0.342543 5_3:+8484272 None:intergenic
GTTTGGTCACGTTAAACTTC+AGG 0.346929 5_3:-8483898 Msa0796440:CDS
GAACTTCTCAAGAAGAGTTT+GGG 0.346980 5_3:-8484248 Msa0796440:CDS
AGGTGCGGGCTTACTTTCAT+TGG 0.357636 5_3:+8483980 None:intergenic
ACGGCGAAAGGCGGAGTGAT+TGG 0.358119 5_3:+8485374 None:intergenic
CAAGCTTGCGATGAAGCCTT+TGG 0.361638 5_3:+8484123 None:intergenic
TCCATTTATCACTAGAATAC+AGG 0.366047 5_3:-8483283 Msa0796440:three_prime_UTR
ACAGAATATCAAGAAGTCTA+AGG 0.367209 5_3:-8484309 Msa0796440:CDS
CTATTGCGGCCGGGCTTTGA+AGG 0.371671 5_3:-8483516 Msa0796440:CDS
TTCTCTTGTAGCTTCTCATC+AGG 0.381853 5_3:+8483960 None:intergenic
CAAGAGAGGATATCATTATC+AGG 0.385515 5_3:-8484030 Msa0796440:CDS
GGACAGAGCTTCAGGAATTA+AGG 0.391083 5_3:-8483736 Msa0796440:CDS
TGTTGATGTTGGTCAAGATT+TGG 0.391866 5_3:-8484480 Msa0796440:CDS
GTTTGTTAATTACATATTGT+TGG 0.393542 5_3:-8483240 Msa0796440:three_prime_UTR
AAATAACGAGACCATACCTT+TGG 0.402152 5_3:+8485314 None:intergenic
GATAAAGAAAAGCATACATA+AGG 0.405087 5_3:-8483694 Msa0796440:CDS
CGGCGAAAGGCGGAGTGATT+GGG 0.411013 5_3:+8485375 None:intergenic
AAGCCACACGTTGAAATTGA+TGG 0.412512 5_3:+8483395 None:intergenic
CCTCCGATAACAATGCAAAA+AGG 0.413586 5_3:+8483429 None:intergenic
TAATCTAATGGTTAATGAAC+CGG 0.420372 5_3:+8483189 None:intergenic
GCTTCAAAGGAGCTTGTGTT+TGG 0.427667 5_3:-8483915 Msa0796440:CDS
GCAATAGCTTCACCCTTCTC+AGG 0.428203 5_3:+8483786 None:intergenic
AACTCGTAACTGTGCAGATC+CGG 0.428390 5_3:-8484087 Msa0796440:CDS
GGCCGGGCTTTGAAGGTCAC+AGG 0.430067 5_3:-8483509 Msa0796440:CDS
CCTTTGGCGAAGCTCTTCAT+AGG 0.445722 5_3:+8484139 None:intergenic
AACGAGAAACCGTGGTTTCA+GGG 0.456991 5_3:-8484374 Msa0796440:CDS
ATAAAGAAAAGCATACATAA+GGG 0.460274 5_3:-8483693 Msa0796440:CDS
GGGTGAAGCTATTGCTAAGA+AGG 0.461254 5_3:-8483778 Msa0796440:CDS
ATGCTGTTATAGGGAGACTT+TGG 0.465023 5_3:-8484542 Msa0796440:intron
TCGGGTCGACGGACGGCGAA+AGG 0.472219 5_3:+8485362 None:intergenic
ATACAAATAACATAATCTAA+TGG 0.473511 5_3:+8483177 None:intergenic
GGATGCCGCGGAGGCTTCAA+AGG 0.475053 5_3:-8483928 Msa0796440:CDS
GTTGGCAGATAAAACTTAGC+TGG 0.478956 5_3:+8484404 None:intergenic
AGGCTTCATCGCAAGCTTGA+AGG 0.479052 5_3:-8484119 Msa0796440:CDS
TGTAGCTTCTCATCAGGTGC+GGG 0.484265 5_3:+8483966 None:intergenic
GTTGCAGAGGTTGTTGATGT+TGG 0.484416 5_3:-8484491 Msa0796440:CDS
CTGATAATGATATCCTCTCT+TGG 0.486659 5_3:+8484031 None:intergenic
CGGAAAAGGCGGCTAAGAAG+AGG 0.488613 5_3:-8484067 Msa0796440:CDS
TGACGGCGGGTTCGGGTCGA+CGG 0.492264 5_3:+8485351 None:intergenic
GGGAAGAGAGAGTTCAATCA+AGG 0.493714 5_3:-8483638 Msa0796440:CDS
AGGTGAGGAAGAAGAGGATG+TGG 0.498717 5_3:-8484207 Msa0796440:CDS
GCTACAAGAGAAGGTGAAGA+AGG 0.500602 5_3:-8483949 Msa0796440:CDS
ACTTGAAAGGGCTAAGAAGT+TGG 0.501671 5_3:-8483829 Msa0796440:CDS
CCGTCCAGCTCCGACACAAA+AGG 0.502260 5_3:+8484179 None:intergenic
AATAACGAGACCATACCTTT+GGG 0.506636 5_3:+8485315 None:intergenic
GATGAAGATGAGGAAGCAAA+AGG 0.510760 5_3:-8484516 Msa0796440:CDS
AAAGCACAAGGAACTTGAAA+GGG 0.512350 5_3:-8483841 Msa0796440:CDS
GGCGGGTTCGGGTCGACGGA+CGG 0.514432 5_3:+8485355 None:intergenic
TCAATCAAGGGATCAGTTGA+AGG 0.518168 5_3:-8483625 Msa0796440:CDS
AAGAAGCGGTGGATGACGGC+GGG 0.518852 5_3:+8485338 None:intergenic
TAACTGTGCAGATCCGGAAA+AGG 0.529066 5_3:-8484081 Msa0796440:CDS
GGCTTTGAAGGTCACAGGGA+AGG 0.530107 5_3:-8483504 Msa0796440:CDS
AGGCAGAGAAGCAAAAGAAA+AGG 0.532776 5_3:-8483605 Msa0796440:CDS
ACTTTGGAGTGATGAAGATG+AGG 0.541362 5_3:-8484526 Msa0796440:CDS
ACCGCTTCTTCCCAAAGGTA+TGG 0.542345 5_3:-8485325 Msa0796440:CDS
CAAAGCACAAGGAACTTGAA+AGG 0.542564 5_3:-8483842 Msa0796440:CDS
TCACGTTAAACTTCAGGATG+AGG 0.542978 5_3:-8483892 Msa0796440:CDS
GAATGAAGGTGAGGAAGAAG+AGG 0.544065 5_3:-8484213 Msa0796440:CDS
TGGGAAGAAGCGGTGGATGA+CGG 0.547206 5_3:+8485334 None:intergenic
GGAAGCATGGAAAGCAGCAA+TGG 0.549880 5_3:-8483757 Msa0796440:CDS
TTATCAATTTGGGATCGTCA+TGG 0.557381 5_3:+8483712 None:intergenic
GGATTAATGATAAGAAAATG+AGG 0.557444 5_3:-8483563 Msa0796440:CDS
GGTTTCTCGTTATCATCAGT+TGG 0.560730 5_3:+8484386 None:intergenic
TGGTTTGCATCATATCATCA+TGG 0.561936 5_3:-8483220 Msa0796440:three_prime_UTR
GAAGAAGAATGATCCTGAGA+AGG 0.567162 5_3:-8483799 Msa0796440:CDS
CTTCAGGATGAGGAAATGCT+AGG 0.569079 5_3:-8483882 Msa0796440:CDS
TCCCTGTGACCTTCAAAGCC+CGG 0.571851 5_3:+8483507 None:intergenic
TGAAAGGGCTAAGAAGTTGG+AGG 0.572734 5_3:-8483826 Msa0796440:CDS
TTGTAGCTTCTCATCAGGTG+CGG 0.577217 5_3:+8483965 None:intergenic
TTGTTGAGACCCTGAAACCA+CGG 0.583522 5_3:+8484365 None:intergenic
TGATGAGAAGCTACAAGAGA+AGG 0.587083 5_3:-8483958 Msa0796440:CDS
GTGTGGTTACAGGCTTCTCA+GGG 0.588570 5_3:+8484273 None:intergenic
CATCCATCAATTTCAACGTG+TGG 0.589707 5_3:-8483398 Msa0796440:three_prime_UTR
CGGAGCTGGACGGAGATGAT+CGG 0.591449 5_3:-8484169 Msa0796440:CDS
ACCATACCTTTGGGAAGAAG+CGG 0.591973 5_3:+8485324 None:intergenic
GAAGCAAAAGGTTGTTGCAG+AGG 0.592741 5_3:-8484504 Msa0796440:CDS
ATCAGGATAATAAACGCAAG+AGG 0.601271 5_3:-8484013 Msa0796440:CDS
AAGAAGAATGATCCTGAGAA+GGG 0.603235 5_3:-8483798 Msa0796440:CDS
CATCCACCGCTTCTTCCCAA+AGG 0.604710 5_3:-8485330 Msa0796440:CDS
CTATTGCTAAGAAGGAAGCA+TGG 0.605991 5_3:-8483770 Msa0796440:CDS
CTGTGCAGATCCGGAAAAGG+CGG 0.608827 5_3:-8484078 Msa0796440:CDS
GTAATTGCCAAAATATAACA+TGG 0.609450 5_3:+8483327 None:intergenic
GAAGGTGAAGAAGGATGCCG+CGG 0.613578 5_3:-8483940 Msa0796440:CDS
GAAGAAGCGGTGGATGACGG+CGG 0.614612 5_3:+8485337 None:intergenic
CTTCTTGAGAAGTTCAAGTG+TGG 0.616015 5_3:+8484256 None:intergenic
TCTGCGAGACACAGATAATG+AGG 0.617650 5_3:+8485420 None:intergenic
GGTCGACGGACGGCGAAAGG+CGG 0.621188 5_3:+8485365 None:intergenic
ATACCTTTGGGAAGAAGCGG+TGG 0.624169 5_3:+8485327 None:intergenic
TAAAGAAAAGCATACATAAG+GGG 0.624269 5_3:-8483692 Msa0796440:CDS
TCAGGATAATAAACGCAAGA+GGG 0.627512 5_3:-8484012 Msa0796440:CDS
GGAAGAGAGAGTTCAATCAA+GGG 0.629511 5_3:-8483637 Msa0796440:CDS
GGAAAAGGCGGCTAAGAAGA+GGG 0.632968 5_3:-8484066 Msa0796440:CDS
CAACAAGAAACAGAAAGCAA+AGG 0.638546 5_3:-8484348 Msa0796440:CDS
GCCGGGCTTTGAAGGTCACA+GGG 0.648501 5_3:-8483508 Msa0796440:CDS
GGTGAAGAAGGATGCCGCGG+AGG 0.652339 5_3:-8483937 Msa0796440:CDS
CCTATGAAGAGCTTCGCCAA+AGG 0.661576 5_3:-8484139 Msa0796440:CDS
TAATTGCCAAAATATAACAT+GGG 0.683860 5_3:+8483328 None:intergenic
GAAGATAGAGACACCAAGAG+AGG 0.685788 5_3:-8484044 Msa0796440:CDS
AAGCTCCTTTGAAGCCTCCG+CGG 0.690454 5_3:+8483923 None:intergenic
GGTCAGATAATATAGCTGAG+AGG 0.714827 5_3:-8483584 Msa0796440:CDS
CTGATGATAACGAGAAACCG+TGG 0.715203 5_3:-8484382 Msa0796440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTTTTTAAATTGGTTTT+AGG - chr5_3:8483470-8483489 Msa0796440:exon 15.0%
!!! TTCTTTTTAAATTGGTTTTA+GGG - chr5_3:8483471-8483490 Msa0796440:exon 15.0%
!!! ATTTATTTTTTTCTTCAGTA+TGG + chr5_3:8483883-8483902 None:intergenic 15.0%
!! ATACAAATAACATAATCTAA+TGG + chr5_3:8485436-8485455 None:intergenic 15.0%
!!! TTTCTTTTTAAATTGGTTTT+AGG - chr5_3:8483470-8483489 Msa0796440:exon 15.0%
!!! TTCTTTTTAAATTGGTTTTA+GGG - chr5_3:8483471-8483490 Msa0796440:exon 15.0%
!!! ATTTATTTTTTTCTTCAGTA+TGG + chr5_3:8483883-8483902 None:intergenic 15.0%
!! ATACAAATAACATAATCTAA+TGG + chr5_3:8485436-8485455 None:intergenic 15.0%
!!! GCAAATGTTTCTTTTTAAAT+TGG - chr5_3:8483463-8483482 Msa0796440:exon 20.0%
!! AATCTTATACATAACATAAG+CGG + chr5_3:8483535-8483554 None:intergenic 20.0%
!! TAATACTAGTTATAGAGTTA+GGG + chr5_3:8483757-8483776 None:intergenic 20.0%
!!! ATGCTTTTCTTTATCAATTT+GGG + chr5_3:8484911-8484930 None:intergenic 20.0%
!!! TATGCTTTTCTTTATCAATT+TGG + chr5_3:8484912-8484931 None:intergenic 20.0%
!!! ATAAAGAAAAGCATACATAA+GGG - chr5_3:8484917-8484936 Msa0796440:intron 20.0%
!!! TATTAACCCATGTTATATTT+TGG - chr5_3:8485276-8485295 Msa0796440:intron 20.0%
!! TAATTGCCAAAATATAACAT+GGG + chr5_3:8485285-8485304 None:intergenic 20.0%
!! AATGGAAATAGTCAAAAAAA+AGG + chr5_3:8485313-8485332 None:intergenic 20.0%
!!! GTTTGTTAATTACATATTGT+TGG - chr5_3:8485370-8485389 Msa0796440:CDS 20.0%
!!! GCAAATGTTTCTTTTTAAAT+TGG - chr5_3:8483463-8483482 Msa0796440:exon 20.0%
!! AATCTTATACATAACATAAG+CGG + chr5_3:8483535-8483554 None:intergenic 20.0%
!! TAATACTAGTTATAGAGTTA+GGG + chr5_3:8483757-8483776 None:intergenic 20.0%
!!! ATGCTTTTCTTTATCAATTT+GGG + chr5_3:8484911-8484930 None:intergenic 20.0%
!!! TATGCTTTTCTTTATCAATT+TGG + chr5_3:8484912-8484931 None:intergenic 20.0%
!!! ATAAAGAAAAGCATACATAA+GGG - chr5_3:8484917-8484936 Msa0796440:intron 20.0%
!!! TATTAACCCATGTTATATTT+TGG - chr5_3:8485276-8485295 Msa0796440:intron 20.0%
!! TAATTGCCAAAATATAACAT+GGG + chr5_3:8485285-8485304 None:intergenic 20.0%
!! AATGGAAATAGTCAAAAAAA+AGG + chr5_3:8485313-8485332 None:intergenic 20.0%
!!! GTTTGTTAATTACATATTGT+TGG - chr5_3:8485370-8485389 Msa0796440:CDS 20.0%
! TGATTGGGATTTAGAAATTA+GGG + chr5_3:8483223-8483242 None:intergenic 25.0%
! GTAATACTAGTTATAGAGTT+AGG + chr5_3:8483758-8483777 None:intergenic 25.0%
! AGTATTACTATACATATTGC+TGG - chr5_3:8483770-8483789 Msa0796440:CDS 25.0%
!! TCTGTGTAATTTTCAAATAC+TGG - chr5_3:8483953-8483972 Msa0796440:CDS 25.0%
!! GATAAAGAAAAGCATACATA+AGG - chr5_3:8484916-8484935 Msa0796440:intron 25.0%
!! TAAAGAAAAGCATACATAAG+GGG - chr5_3:8484918-8484937 Msa0796440:intron 25.0%
! AAGAAAAAAATGCAGAGAAA+TGG - chr5_3:8484951-8484970 Msa0796440:intron 25.0%
! AGAAAAAAATGCAGAGAAAT+GGG - chr5_3:8484952-8484971 Msa0796440:intron 25.0%
! GGATTAATGATAAGAAAATG+AGG - chr5_3:8485047-8485066 Msa0796440:intron 25.0%
! GTAATTGCCAAAATATAACA+TGG + chr5_3:8485286-8485305 None:intergenic 25.0%
! TAATCTAATGGTTAATGAAC+CGG + chr5_3:8485424-8485443 None:intergenic 25.0%
! TGATTGGGATTTAGAAATTA+GGG + chr5_3:8483223-8483242 None:intergenic 25.0%
! GTAATACTAGTTATAGAGTT+AGG + chr5_3:8483758-8483777 None:intergenic 25.0%
! AGTATTACTATACATATTGC+TGG - chr5_3:8483770-8483789 Msa0796440:CDS 25.0%
!! TCTGTGTAATTTTCAAATAC+TGG - chr5_3:8483953-8483972 Msa0796440:CDS 25.0%
!! GATAAAGAAAAGCATACATA+AGG - chr5_3:8484916-8484935 Msa0796440:intron 25.0%
!! TAAAGAAAAGCATACATAAG+GGG - chr5_3:8484918-8484937 Msa0796440:intron 25.0%
! AAGAAAAAAATGCAGAGAAA+TGG - chr5_3:8484951-8484970 Msa0796440:intron 25.0%
! AGAAAAAAATGCAGAGAAAT+GGG - chr5_3:8484952-8484971 Msa0796440:intron 25.0%
! GGATTAATGATAAGAAAATG+AGG - chr5_3:8485047-8485066 Msa0796440:intron 25.0%
! GTAATTGCCAAAATATAACA+TGG + chr5_3:8485286-8485305 None:intergenic 25.0%
! TAATCTAATGGTTAATGAAC+CGG + chr5_3:8485424-8485443 None:intergenic 25.0%
GTGATTGGGATTTAGAAATT+AGG + chr5_3:8483224-8483243 None:intergenic 30.0%
GAAGAAAATAAAGAACGAAG+TGG + chr5_3:8483384-8483403 None:intergenic 30.0%
ATGTATGCTATAAGCTAGAT+TGG - chr5_3:8483605-8483624 Msa0796440:CDS 30.0%
TTAAATGTAATCACATGTGC+TGG - chr5_3:8483906-8483925 Msa0796440:CDS 30.0%
TTATTCTCTCATGCTGTTAT+AGG - chr5_3:8484058-8484077 Msa0796440:CDS 30.0%
TATTCTCTCATGCTGTTATA+GGG - chr5_3:8484059-8484078 Msa0796440:CDS 30.0%
AACCAATTTGTCGAAAAAAC+TGG + chr5_3:8484177-8484196 None:intergenic 30.0%
ACAGAATATCAAGAAGTCTA+AGG - chr5_3:8484301-8484320 Msa0796440:CDS 30.0%
GAGAAAAATTTCAAAGCACA+AGG - chr5_3:8484757-8484776 Msa0796440:intron 30.0%
!!! GGTTTTATTAATAGCAGTTC+TGG - chr5_3:8485127-8485146 Msa0796440:intron 30.0%
! GTACCTTTTTGCATTGTTAT+CGG - chr5_3:8485178-8485197 Msa0796440:intron 30.0%
TCCATTTATCACTAGAATAC+AGG - chr5_3:8485327-8485346 Msa0796440:CDS 30.0%
GTGATTGGGATTTAGAAATT+AGG + chr5_3:8483224-8483243 None:intergenic 30.0%
GAAGAAAATAAAGAACGAAG+TGG + chr5_3:8483384-8483403 None:intergenic 30.0%
ATGTATGCTATAAGCTAGAT+TGG - chr5_3:8483605-8483624 Msa0796440:CDS 30.0%
TTAAATGTAATCACATGTGC+TGG - chr5_3:8483906-8483925 Msa0796440:CDS 30.0%
TTATTCTCTCATGCTGTTAT+AGG - chr5_3:8484058-8484077 Msa0796440:CDS 30.0%
TATTCTCTCATGCTGTTATA+GGG - chr5_3:8484059-8484078 Msa0796440:CDS 30.0%
AACCAATTTGTCGAAAAAAC+TGG + chr5_3:8484177-8484196 None:intergenic 30.0%
ACAGAATATCAAGAAGTCTA+AGG - chr5_3:8484301-8484320 Msa0796440:CDS 30.0%
GAGAAAAATTTCAAAGCACA+AGG - chr5_3:8484757-8484776 Msa0796440:intron 30.0%
!!! GGTTTTATTAATAGCAGTTC+TGG - chr5_3:8485127-8485146 Msa0796440:intron 30.0%
! GTACCTTTTTGCATTGTTAT+CGG - chr5_3:8485178-8485197 Msa0796440:intron 30.0%
TCCATTTATCACTAGAATAC+AGG - chr5_3:8485327-8485346 Msa0796440:CDS 30.0%
AATAACGAGACCATACCTTT+GGG + chr5_3:8483298-8483317 None:intergenic 35.0%
AAATAACGAGACCATACCTT+TGG + chr5_3:8483299-8483318 None:intergenic 35.0%
!!! AATTGGTTTTAGGGTCTGTT+TGG - chr5_3:8483480-8483499 Msa0796440:CDS 35.0%
! TAAGCTTTGTGAGACTGTTT+GGG + chr5_3:8483696-8483715 None:intergenic 35.0%
! ATAAGCTTTGTGAGACTGTT+TGG + chr5_3:8483697-8483716 None:intergenic 35.0%
TTATAGAGTTAGGGACTGTT+TGG + chr5_3:8483748-8483767 None:intergenic 35.0%
ACTATACATATTGCTGGCAA+AGG - chr5_3:8483776-8483795 Msa0796440:CDS 35.0%
GTGAACGTCATATCTAATGT+CGG + chr5_3:8483851-8483870 None:intergenic 35.0%
TGTTGATGTTGGTCAAGATT+TGG - chr5_3:8484130-8484149 Msa0796440:CDS 35.0%
!!! TGCCAGTTTTTTCGACAAAT+TGG - chr5_3:8484172-8484191 Msa0796440:CDS 35.0%
CAACAAGAAACAGAAAGCAA+AGG - chr5_3:8484262-8484281 Msa0796440:CDS 35.0%
TGAACTTCTCAAGAAGAGTT+TGG - chr5_3:8484361-8484380 Msa0796440:CDS 35.0%
GAACTTCTCAAGAAGAGTTT+GGG - chr5_3:8484362-8484381 Msa0796440:CDS 35.0%
GGAAAAGAAAAAGCGAATGA+AGG - chr5_3:8484383-8484402 Msa0796440:CDS 35.0%
! CTGATAATGATATCCTCTCT+TGG + chr5_3:8484582-8484601 None:intergenic 35.0%
CAAGAGAGGATATCATTATC+AGG - chr5_3:8484580-8484599 Msa0796440:intron 35.0%
ATCAGGATAATAAACGCAAG+AGG - chr5_3:8484597-8484616 Msa0796440:intron 35.0%
TCAGGATAATAAACGCAAGA+GGG - chr5_3:8484598-8484617 Msa0796440:intron 35.0%
AAAGCACAAGGAACTTGAAA+GGG - chr5_3:8484769-8484788 Msa0796440:intron 35.0%
AAGAAGAATGATCCTGAGAA+GGG - chr5_3:8484812-8484831 Msa0796440:intron 35.0%
! TTATCAATTTGGGATCGTCA+TGG + chr5_3:8484901-8484920 None:intergenic 35.0%
AGAGAGAGAAAAAGCTATTG+CGG - chr5_3:8485080-8485099 Msa0796440:intron 35.0%
GCCTGTATTCTAGTGATAAA+TGG + chr5_3:8485331-8485350 None:intergenic 35.0%
! TCACTAGAATACAGGCATTT+TGG - chr5_3:8485335-8485354 Msa0796440:CDS 35.0%
! TGGTTTGCATCATATCATCA+TGG - chr5_3:8485390-8485409 Msa0796440:CDS 35.0%
TATCATCATGGCAGATTTAC+CGG - chr5_3:8485402-8485421 Msa0796440:CDS 35.0%
AATAACGAGACCATACCTTT+GGG + chr5_3:8483298-8483317 None:intergenic 35.0%
AAATAACGAGACCATACCTT+TGG + chr5_3:8483299-8483318 None:intergenic 35.0%
!!! AATTGGTTTTAGGGTCTGTT+TGG - chr5_3:8483480-8483499 Msa0796440:CDS 35.0%
! TAAGCTTTGTGAGACTGTTT+GGG + chr5_3:8483696-8483715 None:intergenic 35.0%
! ATAAGCTTTGTGAGACTGTT+TGG + chr5_3:8483697-8483716 None:intergenic 35.0%
TTATAGAGTTAGGGACTGTT+TGG + chr5_3:8483748-8483767 None:intergenic 35.0%
ACTATACATATTGCTGGCAA+AGG - chr5_3:8483776-8483795 Msa0796440:CDS 35.0%
GTGAACGTCATATCTAATGT+CGG + chr5_3:8483851-8483870 None:intergenic 35.0%
TGTTGATGTTGGTCAAGATT+TGG - chr5_3:8484130-8484149 Msa0796440:CDS 35.0%
!!! TGCCAGTTTTTTCGACAAAT+TGG - chr5_3:8484172-8484191 Msa0796440:CDS 35.0%
CAACAAGAAACAGAAAGCAA+AGG - chr5_3:8484262-8484281 Msa0796440:CDS 35.0%
TGAACTTCTCAAGAAGAGTT+TGG - chr5_3:8484361-8484380 Msa0796440:CDS 35.0%
GAACTTCTCAAGAAGAGTTT+GGG - chr5_3:8484362-8484381 Msa0796440:CDS 35.0%
GGAAAAGAAAAAGCGAATGA+AGG - chr5_3:8484383-8484402 Msa0796440:CDS 35.0%
! CTGATAATGATATCCTCTCT+TGG + chr5_3:8484582-8484601 None:intergenic 35.0%
CAAGAGAGGATATCATTATC+AGG - chr5_3:8484580-8484599 Msa0796440:intron 35.0%
ATCAGGATAATAAACGCAAG+AGG - chr5_3:8484597-8484616 Msa0796440:intron 35.0%
TCAGGATAATAAACGCAAGA+GGG - chr5_3:8484598-8484617 Msa0796440:intron 35.0%
AAAGCACAAGGAACTTGAAA+GGG - chr5_3:8484769-8484788 Msa0796440:intron 35.0%
AAGAAGAATGATCCTGAGAA+GGG - chr5_3:8484812-8484831 Msa0796440:intron 35.0%
! TTATCAATTTGGGATCGTCA+TGG + chr5_3:8484901-8484920 None:intergenic 35.0%
AGAGAGAGAAAAAGCTATTG+CGG - chr5_3:8485080-8485099 Msa0796440:intron 35.0%
GCCTGTATTCTAGTGATAAA+TGG + chr5_3:8485331-8485350 None:intergenic 35.0%
! TCACTAGAATACAGGCATTT+TGG - chr5_3:8485335-8485354 Msa0796440:CDS 35.0%
! TGGTTTGCATCATATCATCA+TGG - chr5_3:8485390-8485409 Msa0796440:CDS 35.0%
TATCATCATGGCAGATTTAC+CGG - chr5_3:8485402-8485421 Msa0796440:CDS 35.0%
AGTGCTTTGTAGGAATTCAG+AGG + chr5_3:8483824-8483843 None:intergenic 40.0%
ATGCTGTTATAGGGAGACTT+TGG - chr5_3:8484068-8484087 Msa0796440:CDS 40.0%
!! ACTTTGGAGTGATGAAGATG+AGG - chr5_3:8484084-8484103 Msa0796440:CDS 40.0%
GATGAAGATGAGGAAGCAAA+AGG - chr5_3:8484094-8484113 Msa0796440:CDS 40.0%
GTTGGCAGATAAAACTTAGC+TGG + chr5_3:8484209-8484228 None:intergenic 40.0%
GGTTTCTCGTTATCATCAGT+TGG + chr5_3:8484227-8484246 None:intergenic 40.0%
AGAAGTTCAAGTGTGGTTAC+AGG + chr5_3:8484350-8484369 None:intergenic 40.0%
CTTCTTGAGAAGTTCAAGTG+TGG + chr5_3:8484357-8484376 None:intergenic 40.0%
AGAAAAAGCGAATGAAGGTG+AGG - chr5_3:8484388-8484407 Msa0796440:CDS 40.0%
! TGTGGTTAAGCCTTTTGTGT+CGG - chr5_3:8484421-8484440 Msa0796440:CDS 40.0%
! ATCGCAAGCTTGAAGGTTTT+CGG - chr5_3:8484498-8484517 Msa0796440:CDS 40.0%
TTCTCTTGTAGCTTCTCATC+AGG + chr5_3:8484653-8484672 None:intergenic 40.0%
TGATGAGAAGCTACAAGAGA+AGG - chr5_3:8484652-8484671 Msa0796440:intron 40.0%
GTTTGGTCACGTTAAACTTC+AGG - chr5_3:8484712-8484731 Msa0796440:intron 40.0%
TCACGTTAAACTTCAGGATG+AGG - chr5_3:8484718-8484737 Msa0796440:intron 40.0%
CAAAGCACAAGGAACTTGAA+AGG - chr5_3:8484768-8484787 Msa0796440:intron 40.0%
ACTTGAAAGGGCTAAGAAGT+TGG - chr5_3:8484781-8484800 Msa0796440:intron 40.0%
GAAGAAGAATGATCCTGAGA+AGG - chr5_3:8484811-8484830 Msa0796440:intron 40.0%
CTATTGCTAAGAAGGAAGCA+TGG - chr5_3:8484840-8484859 Msa0796440:intron 40.0%
GGAAGAGAGAGTTCAATCAA+GGG - chr5_3:8484973-8484992 Msa0796440:intron 40.0%
TCAATCAAGGGATCAGTTGA+AGG - chr5_3:8484985-8485004 Msa0796440:intron 40.0%
AGGCAGAGAAGCAAAAGAAA+AGG - chr5_3:8485005-8485024 Msa0796440:intron 40.0%
GGTCAGATAATATAGCTGAG+AGG - chr5_3:8485026-8485045 Msa0796440:intron 40.0%
CCTCCGATAACAATGCAAAA+AGG + chr5_3:8485184-8485203 None:intergenic 40.0%
! CCTTTTTGCATTGTTATCGG+AGG - chr5_3:8485181-8485200 Msa0796440:intron 40.0%
CATCCATCAATTTCAACGTG+TGG - chr5_3:8485212-8485231 Msa0796440:intron 40.0%
AAGCCACACGTTGAAATTGA+TGG + chr5_3:8485218-8485237 None:intergenic 40.0%
AGTGCTTTGTAGGAATTCAG+AGG + chr5_3:8483824-8483843 None:intergenic 40.0%
ATGCTGTTATAGGGAGACTT+TGG - chr5_3:8484068-8484087 Msa0796440:CDS 40.0%
!! ACTTTGGAGTGATGAAGATG+AGG - chr5_3:8484084-8484103 Msa0796440:CDS 40.0%
GATGAAGATGAGGAAGCAAA+AGG - chr5_3:8484094-8484113 Msa0796440:CDS 40.0%
GTTGGCAGATAAAACTTAGC+TGG + chr5_3:8484209-8484228 None:intergenic 40.0%
GGTTTCTCGTTATCATCAGT+TGG + chr5_3:8484227-8484246 None:intergenic 40.0%
AGAAGTTCAAGTGTGGTTAC+AGG + chr5_3:8484350-8484369 None:intergenic 40.0%
CTTCTTGAGAAGTTCAAGTG+TGG + chr5_3:8484357-8484376 None:intergenic 40.0%
AGAAAAAGCGAATGAAGGTG+AGG - chr5_3:8484388-8484407 Msa0796440:CDS 40.0%
! TGTGGTTAAGCCTTTTGTGT+CGG - chr5_3:8484421-8484440 Msa0796440:CDS 40.0%
! ATCGCAAGCTTGAAGGTTTT+CGG - chr5_3:8484498-8484517 Msa0796440:CDS 40.0%
TTCTCTTGTAGCTTCTCATC+AGG + chr5_3:8484653-8484672 None:intergenic 40.0%
TGATGAGAAGCTACAAGAGA+AGG - chr5_3:8484652-8484671 Msa0796440:intron 40.0%
GTTTGGTCACGTTAAACTTC+AGG - chr5_3:8484712-8484731 Msa0796440:intron 40.0%
TCACGTTAAACTTCAGGATG+AGG - chr5_3:8484718-8484737 Msa0796440:intron 40.0%
CAAAGCACAAGGAACTTGAA+AGG - chr5_3:8484768-8484787 Msa0796440:intron 40.0%
ACTTGAAAGGGCTAAGAAGT+TGG - chr5_3:8484781-8484800 Msa0796440:intron 40.0%
GAAGAAGAATGATCCTGAGA+AGG - chr5_3:8484811-8484830 Msa0796440:intron 40.0%
CTATTGCTAAGAAGGAAGCA+TGG - chr5_3:8484840-8484859 Msa0796440:intron 40.0%
GGAAGAGAGAGTTCAATCAA+GGG - chr5_3:8484973-8484992 Msa0796440:intron 40.0%
TCAATCAAGGGATCAGTTGA+AGG - chr5_3:8484985-8485004 Msa0796440:intron 40.0%
AGGCAGAGAAGCAAAAGAAA+AGG - chr5_3:8485005-8485024 Msa0796440:intron 40.0%
GGTCAGATAATATAGCTGAG+AGG - chr5_3:8485026-8485045 Msa0796440:intron 40.0%
CCTCCGATAACAATGCAAAA+AGG + chr5_3:8485184-8485203 None:intergenic 40.0%
! CCTTTTTGCATTGTTATCGG+AGG - chr5_3:8485181-8485200 Msa0796440:intron 40.0%
CATCCATCAATTTCAACGTG+TGG - chr5_3:8485212-8485231 Msa0796440:intron 40.0%
AAGCCACACGTTGAAATTGA+TGG + chr5_3:8485218-8485237 None:intergenic 40.0%
TCTGCGAGACACAGATAATG+AGG + chr5_3:8483193-8483212 None:intergenic 45.0%
! ACCATACCTTTGGGAAGAAG+CGG + chr5_3:8483289-8483308 None:intergenic 45.0%
! TGTCGGTGATAGTGCTTTGT+AGG + chr5_3:8483834-8483853 None:intergenic 45.0%
GAAGCAAAAGGTTGTTGCAG+AGG - chr5_3:8484106-8484125 Msa0796440:CDS 45.0%
GTTGCAGAGGTTGTTGATGT+TGG - chr5_3:8484119-8484138 Msa0796440:CDS 45.0%
! CTGATGATAACGAGAAACCG+TGG - chr5_3:8484228-8484247 Msa0796440:CDS 45.0%
TAACGAGAAACCGTGGTTTC+AGG - chr5_3:8484235-8484254 Msa0796440:CDS 45.0%
AACGAGAAACCGTGGTTTCA+GGG - chr5_3:8484236-8484255 Msa0796440:CDS 45.0%
TTGTTGAGACCCTGAAACCA+CGG + chr5_3:8484248-8484267 None:intergenic 45.0%
GAATGAAGGTGAGGAAGAAG+AGG - chr5_3:8484397-8484416 Msa0796440:CDS 45.0%
AACTCGTAACTGTGCAGATC+CGG - chr5_3:8484523-8484542 Msa0796440:CDS 45.0%
TAACTGTGCAGATCCGGAAA+AGG - chr5_3:8484529-8484548 Msa0796440:CDS 45.0%
GAAGATAGAGACACCAAGAG+AGG - chr5_3:8484566-8484585 Msa0796440:intron 45.0%
TTGTAGCTTCTCATCAGGTG+CGG + chr5_3:8484648-8484667 None:intergenic 45.0%
GCTACAAGAGAAGGTGAAGA+AGG - chr5_3:8484661-8484680 Msa0796440:intron 45.0%
GCTTCAAAGGAGCTTGTGTT+TGG - chr5_3:8484695-8484714 Msa0796440:intron 45.0%
CTTCAGGATGAGGAAATGCT+AGG - chr5_3:8484728-8484747 Msa0796440:intron 45.0%
TGAAAGGGCTAAGAAGTTGG+AGG - chr5_3:8484784-8484803 Msa0796440:intron 45.0%
GGGTGAAGCTATTGCTAAGA+AGG - chr5_3:8484832-8484851 Msa0796440:intron 45.0%
GGACAGAGCTTCAGGAATTA+AGG - chr5_3:8484874-8484893 Msa0796440:intron 45.0%
GGGAAGAGAGAGTTCAATCA+AGG - chr5_3:8484972-8484991 Msa0796440:intron 45.0%
AGAGAAAAAGCTATTGCGGC+CGG - chr5_3:8485084-8485103 Msa0796440:intron 45.0%
TCTGCGAGACACAGATAATG+AGG + chr5_3:8483193-8483212 None:intergenic 45.0%
! ACCATACCTTTGGGAAGAAG+CGG + chr5_3:8483289-8483308 None:intergenic 45.0%
! TGTCGGTGATAGTGCTTTGT+AGG + chr5_3:8483834-8483853 None:intergenic 45.0%
GAAGCAAAAGGTTGTTGCAG+AGG - chr5_3:8484106-8484125 Msa0796440:CDS 45.0%
GTTGCAGAGGTTGTTGATGT+TGG - chr5_3:8484119-8484138 Msa0796440:CDS 45.0%
! CTGATGATAACGAGAAACCG+TGG - chr5_3:8484228-8484247 Msa0796440:CDS 45.0%
TAACGAGAAACCGTGGTTTC+AGG - chr5_3:8484235-8484254 Msa0796440:CDS 45.0%
AACGAGAAACCGTGGTTTCA+GGG - chr5_3:8484236-8484255 Msa0796440:CDS 45.0%
TTGTTGAGACCCTGAAACCA+CGG + chr5_3:8484248-8484267 None:intergenic 45.0%
GAATGAAGGTGAGGAAGAAG+AGG - chr5_3:8484397-8484416 Msa0796440:CDS 45.0%
AACTCGTAACTGTGCAGATC+CGG - chr5_3:8484523-8484542 Msa0796440:CDS 45.0%
TAACTGTGCAGATCCGGAAA+AGG - chr5_3:8484529-8484548 Msa0796440:CDS 45.0%
GAAGATAGAGACACCAAGAG+AGG - chr5_3:8484566-8484585 Msa0796440:intron 45.0%
TTGTAGCTTCTCATCAGGTG+CGG + chr5_3:8484648-8484667 None:intergenic 45.0%
GCTACAAGAGAAGGTGAAGA+AGG - chr5_3:8484661-8484680 Msa0796440:intron 45.0%
GCTTCAAAGGAGCTTGTGTT+TGG - chr5_3:8484695-8484714 Msa0796440:intron 45.0%
CTTCAGGATGAGGAAATGCT+AGG - chr5_3:8484728-8484747 Msa0796440:intron 45.0%
TGAAAGGGCTAAGAAGTTGG+AGG - chr5_3:8484784-8484803 Msa0796440:intron 45.0%
GGGTGAAGCTATTGCTAAGA+AGG - chr5_3:8484832-8484851 Msa0796440:intron 45.0%
GGACAGAGCTTCAGGAATTA+AGG - chr5_3:8484874-8484893 Msa0796440:intron 45.0%
GGGAAGAGAGAGTTCAATCA+AGG - chr5_3:8484972-8484991 Msa0796440:intron 45.0%
AGAGAAAAAGCTATTGCGGC+CGG - chr5_3:8485084-8485103 Msa0796440:intron 45.0%
! ATACCTTTGGGAAGAAGCGG+TGG + chr5_3:8483286-8483305 None:intergenic 50.0%
ACCGCTTCTTCCCAAAGGTA+TGG - chr5_3:8483285-8483304 Msa0796440:three_prime_UTR 50.0%
GTGTGGTTACAGGCTTCTCA+GGG + chr5_3:8484340-8484359 None:intergenic 50.0%
AGTGTGGTTACAGGCTTCTC+AGG + chr5_3:8484341-8484360 None:intergenic 50.0%
AGGTGAGGAAGAAGAGGATG+TGG - chr5_3:8484403-8484422 Msa0796440:CDS 50.0%
! TAAGCCTTTTGTGTCGGAGC+TGG - chr5_3:8484427-8484446 Msa0796440:CDS 50.0%
CCTTTGGCGAAGCTCTTCAT+AGG + chr5_3:8484474-8484493 None:intergenic 50.0%
CCTATGAAGAGCTTCGCCAA+AGG - chr5_3:8484471-8484490 Msa0796440:CDS 50.0%
CAAGCTTGCGATGAAGCCTT+TGG + chr5_3:8484490-8484509 None:intergenic 50.0%
AGGCTTCATCGCAAGCTTGA+AGG - chr5_3:8484491-8484510 Msa0796440:CDS 50.0%
! CTCTTCTTAGCCGCCTTTTC+CGG + chr5_3:8484545-8484564 None:intergenic 50.0%
GGAAAAGGCGGCTAAGAAGA+GGG - chr5_3:8484544-8484563 Msa0796440:intron 50.0%
AGGTGCGGGCTTACTTTCAT+TGG + chr5_3:8484633-8484652 None:intergenic 50.0%
TGTAGCTTCTCATCAGGTGC+GGG + chr5_3:8484647-8484666 None:intergenic 50.0%
GCAATAGCTTCACCCTTCTC+AGG + chr5_3:8484827-8484846 None:intergenic 50.0%
! GGAAGCATGGAAAGCAGCAA+TGG - chr5_3:8484853-8484872 Msa0796440:intron 50.0%
GAGAAAAAGCTATTGCGGCC+GGG - chr5_3:8485085-8485104 Msa0796440:intron 50.0%
! ATACCTTTGGGAAGAAGCGG+TGG + chr5_3:8483286-8483305 None:intergenic 50.0%
ACCGCTTCTTCCCAAAGGTA+TGG - chr5_3:8483285-8483304 Msa0796440:three_prime_UTR 50.0%
GTGTGGTTACAGGCTTCTCA+GGG + chr5_3:8484340-8484359 None:intergenic 50.0%
AGTGTGGTTACAGGCTTCTC+AGG + chr5_3:8484341-8484360 None:intergenic 50.0%
AGGTGAGGAAGAAGAGGATG+TGG - chr5_3:8484403-8484422 Msa0796440:CDS 50.0%
! TAAGCCTTTTGTGTCGGAGC+TGG - chr5_3:8484427-8484446 Msa0796440:CDS 50.0%
CCTTTGGCGAAGCTCTTCAT+AGG + chr5_3:8484474-8484493 None:intergenic 50.0%
CCTATGAAGAGCTTCGCCAA+AGG - chr5_3:8484471-8484490 Msa0796440:CDS 50.0%
CAAGCTTGCGATGAAGCCTT+TGG + chr5_3:8484490-8484509 None:intergenic 50.0%
AGGCTTCATCGCAAGCTTGA+AGG - chr5_3:8484491-8484510 Msa0796440:CDS 50.0%
! CTCTTCTTAGCCGCCTTTTC+CGG + chr5_3:8484545-8484564 None:intergenic 50.0%
GGAAAAGGCGGCTAAGAAGA+GGG - chr5_3:8484544-8484563 Msa0796440:intron 50.0%
AGGTGCGGGCTTACTTTCAT+TGG + chr5_3:8484633-8484652 None:intergenic 50.0%
TGTAGCTTCTCATCAGGTGC+GGG + chr5_3:8484647-8484666 None:intergenic 50.0%
GCAATAGCTTCACCCTTCTC+AGG + chr5_3:8484827-8484846 None:intergenic 50.0%
! GGAAGCATGGAAAGCAGCAA+TGG - chr5_3:8484853-8484872 Msa0796440:intron 50.0%
GAGAAAAAGCTATTGCGGCC+GGG - chr5_3:8485085-8485104 Msa0796440:intron 50.0%
TGGGAAGAAGCGGTGGATGA+CGG + chr5_3:8483279-8483298 None:intergenic 55.0%
CATCCACCGCTTCTTCCCAA+AGG - chr5_3:8483280-8483299 Msa0796440:three_prime_UTR 55.0%
!! TGCTGGTGTCGATGCTACAG+AGG - chr5_3:8483923-8483942 Msa0796440:CDS 55.0%
! CCTTTTGTGTCGGAGCTGGA+CGG - chr5_3:8484431-8484450 Msa0796440:CDS 55.0%
CTGTGCAGATCCGGAAAAGG+CGG - chr5_3:8484532-8484551 Msa0796440:CDS 55.0%
CGGAAAAGGCGGCTAAGAAG+AGG - chr5_3:8484543-8484562 Msa0796440:intron 55.0%
GAAGGTGAAGAAGGATGCCG+CGG - chr5_3:8484670-8484689 Msa0796440:intron 55.0%
!! AAGCTCCTTTGAAGCCTCCG+CGG + chr5_3:8484690-8484709 None:intergenic 55.0%
GCAGCAATGGACAGAGCTTC+AGG - chr5_3:8484866-8484885 Msa0796440:intron 55.0%
TCCCTGTGACCTTCAAAGCC+CGG + chr5_3:8485106-8485125 None:intergenic 55.0%
!! GGCTTTGAAGGTCACAGGGA+AGG - chr5_3:8485106-8485125 Msa0796440:intron 55.0%
TGGGAAGAAGCGGTGGATGA+CGG + chr5_3:8483279-8483298 None:intergenic 55.0%
CATCCACCGCTTCTTCCCAA+AGG - chr5_3:8483280-8483299 Msa0796440:three_prime_UTR 55.0%
!! TGCTGGTGTCGATGCTACAG+AGG - chr5_3:8483923-8483942 Msa0796440:CDS 55.0%
! CCTTTTGTGTCGGAGCTGGA+CGG - chr5_3:8484431-8484450 Msa0796440:CDS 55.0%
CTGTGCAGATCCGGAAAAGG+CGG - chr5_3:8484532-8484551 Msa0796440:CDS 55.0%
CGGAAAAGGCGGCTAAGAAG+AGG - chr5_3:8484543-8484562 Msa0796440:intron 55.0%
GAAGGTGAAGAAGGATGCCG+CGG - chr5_3:8484670-8484689 Msa0796440:intron 55.0%
!! AAGCTCCTTTGAAGCCTCCG+CGG + chr5_3:8484690-8484709 None:intergenic 55.0%
GCAGCAATGGACAGAGCTTC+AGG - chr5_3:8484866-8484885 Msa0796440:intron 55.0%
TCCCTGTGACCTTCAAAGCC+CGG + chr5_3:8485106-8485125 None:intergenic 55.0%
!! GGCTTTGAAGGTCACAGGGA+AGG - chr5_3:8485106-8485125 Msa0796440:intron 55.0%
CGGCGAAAGGCGGAGTGATT+GGG + chr5_3:8483238-8483257 None:intergenic 60.0%
ACGGCGAAAGGCGGAGTGAT+TGG + chr5_3:8483239-8483258 None:intergenic 60.0%
! AAGAAGCGGTGGATGACGGC+GGG + chr5_3:8483275-8483294 None:intergenic 60.0%
! GAAGAAGCGGTGGATGACGG+CGG + chr5_3:8483276-8483295 None:intergenic 60.0%
CCGTCCAGCTCCGACACAAA+AGG + chr5_3:8484434-8484453 None:intergenic 60.0%
CGGAGCTGGACGGAGATGAT+CGG - chr5_3:8484441-8484460 Msa0796440:CDS 60.0%
! CTATTGCGGCCGGGCTTTGA+AGG - chr5_3:8485094-8485113 Msa0796440:intron 60.0%
!! GCCGGGCTTTGAAGGTCACA+GGG - chr5_3:8485102-8485121 Msa0796440:intron 60.0%
CGGCGAAAGGCGGAGTGATT+GGG + chr5_3:8483238-8483257 None:intergenic 60.0%
ACGGCGAAAGGCGGAGTGAT+TGG + chr5_3:8483239-8483258 None:intergenic 60.0%
! AAGAAGCGGTGGATGACGGC+GGG + chr5_3:8483275-8483294 None:intergenic 60.0%
! GAAGAAGCGGTGGATGACGG+CGG + chr5_3:8483276-8483295 None:intergenic 60.0%
CCGTCCAGCTCCGACACAAA+AGG + chr5_3:8484434-8484453 None:intergenic 60.0%
CGGAGCTGGACGGAGATGAT+CGG - chr5_3:8484441-8484460 Msa0796440:CDS 60.0%
! CTATTGCGGCCGGGCTTTGA+AGG - chr5_3:8485094-8485113 Msa0796440:intron 60.0%
!! GCCGGGCTTTGAAGGTCACA+GGG - chr5_3:8485102-8485121 Msa0796440:intron 60.0%
GGTGAAGAAGGATGCCGCGG+AGG - chr5_3:8484673-8484692 Msa0796440:intron 65.0%
GGATGCCGCGGAGGCTTCAA+AGG - chr5_3:8484682-8484701 Msa0796440:intron 65.0%
!! GGCCGGGCTTTGAAGGTCAC+AGG - chr5_3:8485101-8485120 Msa0796440:intron 65.0%
GGTGAAGAAGGATGCCGCGG+AGG - chr5_3:8484673-8484692 Msa0796440:intron 65.0%
GGATGCCGCGGAGGCTTCAA+AGG - chr5_3:8484682-8484701 Msa0796440:intron 65.0%
!! GGCCGGGCTTTGAAGGTCAC+AGG - chr5_3:8485101-8485120 Msa0796440:intron 65.0%
GGTCGACGGACGGCGAAAGG+CGG + chr5_3:8483248-8483267 None:intergenic 70.0%
TCGGGTCGACGGACGGCGAA+AGG + chr5_3:8483251-8483270 None:intergenic 70.0%
! TGACGGCGGGTTCGGGTCGA+CGG + chr5_3:8483262-8483281 None:intergenic 70.0%
! CGGTGGATGACGGCGGGTTC+GGG + chr5_3:8483269-8483288 None:intergenic 70.0%
! GCGGTGGATGACGGCGGGTT+CGG + chr5_3:8483270-8483289 None:intergenic 70.0%
GGTCGACGGACGGCGAAAGG+CGG + chr5_3:8483248-8483267 None:intergenic 70.0%
TCGGGTCGACGGACGGCGAA+AGG + chr5_3:8483251-8483270 None:intergenic 70.0%
! TGACGGCGGGTTCGGGTCGA+CGG + chr5_3:8483262-8483281 None:intergenic 70.0%
! CGGTGGATGACGGCGGGTTC+GGG + chr5_3:8483269-8483288 None:intergenic 70.0%
! GCGGTGGATGACGGCGGGTT+CGG + chr5_3:8483270-8483289 None:intergenic 70.0%
! GGCGGGTTCGGGTCGACGGA+CGG + chr5_3:8483258-8483277 None:intergenic 75.0%
! GGCGGGTTCGGGTCGACGGA+CGG + chr5_3:8483258-8483277 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 8483174 8485458 8483174 ID=Msa0796440;Name=Msa0796440
chr5_3 mRNA 8483174 8485458 8483174 ID=Msa0796440-mRNA-1;Parent=Msa0796440;Name=Msa0796440-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0.5|1|1|1|2|305|403
chr5_3 exon 8483174 8484552 8483174 ID=Msa0796440-mRNA-1:exon:3498;Parent=Msa0796440-mRNA-1
chr5_3 exon 8485321 8485458 8485321 ID=Msa0796440-mRNA-1:exon:3497;Parent=Msa0796440-mRNA-1
chr5_3 CDS 8485321 8485458 8485321 ID=Msa0796440-mRNA-1:cds;Parent=Msa0796440-mRNA-1
chr5_3 CDS 8483479 8484552 8483479 ID=Msa0796440-mRNA-1:cds;Parent=Msa0796440-mRNA-1
chr5_3 three_prime_UTR 8483174 8483478 8483174 ID=Msa0796440-mRNA-1:three_prime_utr;Parent=Msa0796440-mRNA-1
Gene Sequence

>Msa0796440

TTGTTAGTTACACGCACCTCATTATCTGTGTCTCGCAGACACGAAACCCTAATTTCTAAATCCCAATCACTCCGCCTTTCGCCGTCCGTCGACCCGAACCCGCCGTCATCCACCGCTTCTTCCCAAAGGTATGGTCTCGGAGACTTTGGAGTGATGAAGATGAGGAAGCAAAAGGTTGTTGCAGAGGTTGTTGATGTTGGTCAAGATTTGGAGTCTGTGATTCACGAGCATGCCAGTTTTTTCGACAAATTGGTTGAACTTATTCCAGCTAAGTTTTATCTGCCAACTGATGATAACGAGAAACCGTGGTTTCAGGGTCTCAACAAGAAACAGAAAGCAAAGGCAAAGAAAAAAACTATACAGAATATCAAGAAGTCTAAGGTGCAGCGTTTAGACCCTGAGAAGCCTGTAACCACACTTGAACTTCTCAAGAAGAGTTTGGGAAAAGAAAAAGCGAATGAAGGTGAGGAAGAAGAGGATGTGGTTAAGCCTTTTGTGTCGGAGCTGGACGGAGATGATCGGTCTGTGACCTATGAAGAGCTTCGCCAAAGGCTTCATCGCAAGCTTGAAGGTTTTCGGTCAACTCGTAACTGTGCAGATCCGGAAAAGGCGGCTAAGAAGAGGGAAGATAGAGACACCAAGAGAGGATATCATTATCAGGATAATAAACGCAAGAGGGATGATGAGACCAATGAAAGTAAGCCCGCACCTGATGAGAAGCTACAAGAGAAGGTGAAGAAGGATGCCGCGGAGGCTTCAAAGGAGCTTGTGTTTGGTCACGTTAAACTTCAGGATGAGGAAATGCTAGGTAAGAAGAGAAAAATTTCAAAGCACAAGGAACTTGAAAGGGCTAAGAAGTTGGAGGAACTGAAGAAGAATGATCCTGAGAAGGGTGAAGCTATTGCTAAGAAGGAAGCATGGAAAGCAGCAATGGACAGAGCTTCAGGAATTAAGGTCCATGACGATCCCAAATTGATAAAGAAAAGCATACATAAGGGGAAGAAGAAGCAAGAAAAAAATGCAGAGAAATGGGAAGAGAGAGTTCAATCAAGGGATCAGTTGAAGGCAGAGAAGCAAAAGAAAAGGTCAGATAATATAGCTGAGAGGATTAATGATAAGAAAATGAGGAAGATTGCAAAGAGAGAGAAAAAGCTATTGCGGCCGGGCTTTGAAGGTCACAGGGAAGGTTTTATTAATAGCAGTTCTGGCTAA

Protein sequence

>Msa0796440

LLVTRTSLSVSRRHETLISKSQSLRLSPSVDPNPPSSTASSQRYGLGDFGVMKMRKQKVVAEVVDVGQDLESVIHEHASFFDKLVELIPAKFYLPTDDNEKPWFQGLNKKQKAKAKKKTIQNIKKSKVQRLDPEKPVTTLELLKKSLGKEKANEGEEEEDVVKPFVSELDGDDRSVTYEELRQRLHRKLEGFRSTRNCADPEKAAKKREDRDTKRGYHYQDNKRKRDDETNESKPAPDEKLQEKVKKDAAEASKELVFGHVKLQDEEMLGKKRKISKHKELERAKKLEELKKNDPEKGEAIAKKEAWKAAMDRASGIKVHDDPKLIKKSIHKGKKKQEKNAEKWEERVQSRDQLKAEKQKKRSDNIAERINDKKMRKIAKREKKLLRPGFEGHREGFINSSSG*