AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1125550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1125550 MtrunA17_Chr7g0266301 96.078 153 6 0 1 153 1 153 1.29e-105 299
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1125550 AT5G15770.1 71.724 145 41 0 7 151 3 147 8.98e-73 216

Find 92 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAACTATCTTATTATTT+TGG 0.145935 7_3:-77034424 Msa1125550:three_prime_UTR
ATAGGACAAGGTTGTCTTTA+TGG 0.149759 7_3:-77035027 Msa1125550:three_prime_UTR
CCCCGTTGCAATAATCTTTC+CGG 0.199227 7_3:+77036111 None:intergenic
TGGTGGGTTGGACATTATTC+TGG 0.237754 7_3:-77034488 Msa1125550:three_prime_UTR
ATTCTTTGTTACAGCTCTTA+TGG 0.246528 7_3:-77034690 Msa1125550:three_prime_UTR
GTCTGTAATCTCTAATCTTC+TGG 0.252175 7_3:+77036273 None:intergenic
AGTACTTCAAGATGTCTTTA+AGG 0.262133 7_3:-77035402 Msa1125550:three_prime_UTR
AAAGGCATTGAAAGAATAAA+AGG 0.271574 7_3:+77035567 None:intergenic
AATTTGCCTGTTCAATGATT+TGG 0.272978 7_3:-77034757 Msa1125550:three_prime_UTR
CTTGAAGTACTTACGGAAAT+AGG 0.282874 7_3:+77035414 None:intergenic
CAGCAGTACATGTTCCTTCC+TGG 0.283965 7_3:-77034606 Msa1125550:three_prime_UTR
CTCTTATGGTACATTTGAAA+TGG 0.294554 7_3:-77034676 Msa1125550:three_prime_UTR
TCGTTCTGTTGGGTGTTATA+AGG 0.300594 7_3:-77035957 Msa1125550:CDS
AATGGGACCTTGATGCTCTT+TGG 0.301050 7_3:-77034658 Msa1125550:three_prime_UTR
TCCATGATTATGTCATTATA+CGG 0.317864 7_3:+77034545 None:intergenic
TTCAATGATTTGGGTGCTTA+AGG 0.318125 7_3:-77034747 Msa1125550:three_prime_UTR
ATTTGCCTGTTCAATGATTT+GGG 0.332911 7_3:-77034756 Msa1125550:three_prime_UTR
TCTTGATTCTTCTATTAAAC+AGG 0.346474 7_3:-77034513 Msa1125550:three_prime_UTR
TAAGAAATTGTGGTAAAGTT+GGG 0.348212 7_3:-77036063 Msa1125550:CDS
GGTTTACTAGATTGAGTTGA+TGG 0.350822 7_3:-77034585 Msa1125550:three_prime_UTR
TTAAGAAATTGTGGTAAAGT+TGG 0.366943 7_3:-77036064 Msa1125550:CDS
ACCGATCATGCTCGTTCTGT+TGG 0.371791 7_3:-77035968 Msa1125550:CDS
AGTGCTCGTGGGAAACAATT+GGG 0.376890 7_3:-77036013 Msa1125550:CDS
TCCATTTATTACAAAAGTTA+AGG 0.378259 7_3:-77034790 Msa1125550:three_prime_UTR
ACCGGAAAGATTATTGCAAC+GGG 0.406061 7_3:-77036112 Msa1125550:CDS
GACTAAACAAGCACATGTTT+CGG 0.406211 7_3:+77035125 None:intergenic
TCTGTTATTTACATGTGTTA+TGG 0.410531 7_3:-77035243 Msa1125550:three_prime_UTR
ATGCTCTTTGGAAATGAAAT+CGG 0.416361 7_3:-77034646 Msa1125550:three_prime_UTR
GTTATTGAAGATGAGATTAC+CGG 0.417687 7_3:-77036130 Msa1125550:CDS
AAGTGCTCGTGGGAAACAAT+TGG 0.427736 7_3:-77036014 Msa1125550:CDS
CTCACTGTTATCTGTACTCT+TGG 0.434639 7_3:-77035180 Msa1125550:three_prime_UTR
GCTATTGTAGCCTGACCTCT+TGG 0.434948 7_3:-77035158 Msa1125550:three_prime_UTR
TAATCTTTCACTAAAAGAAA+TGG 0.436591 7_3:+77035318 None:intergenic
AACATTATTCGTAGTACATA+AGG 0.443215 7_3:+77035346 None:intergenic
CCGATCATGCTCGTTCTGTT+GGG 0.443895 7_3:-77035967 Msa1125550:CDS
GTTGTGCATAGTGTTCATTT+TGG 0.445522 7_3:-77035438 Msa1125550:three_prime_UTR
CCATTGATGGTAGTTAATAA+AGG 0.447441 7_3:+77035549 None:intergenic
AGTCTCTGATAAGGAATTTG+AGG 0.451854 7_3:-77036200 Msa1125550:CDS
GATCAGAATTACAGCTGAAC+CGG 0.453557 7_3:+77034980 None:intergenic
TCTTATGGTACATTTGAAAT+GGG 0.455229 7_3:-77034675 Msa1125550:three_prime_UTR
AAGACATCTTGAAGTACTTA+CGG 0.459475 7_3:+77035407 None:intergenic
CCTTTATTAACTACCATCAA+TGG 0.464898 7_3:-77035549 Msa1125550:CDS
TTGTGATTCAGTCTCTGATA+AGG 0.468883 7_3:-77036209 Msa1125550:CDS
AAGCACCCAAATCATTGAAC+AGG 0.470933 7_3:+77034751 None:intergenic
TTTCGAGAGGTTGATTCACT+TGG 0.471380 7_3:-77036172 Msa1125550:CDS
ATGAACACTATGCACAACTC+TGG 0.493471 7_3:+77035443 None:intergenic
CGATTGCAGTGTTGAGAACA+AGG 0.494534 7_3:-77035927 Msa1125550:CDS
CTATGAGAAATGTGGTTTCA+AGG 0.496011 7_3:-77035900 Msa1125550:CDS
TTCTATTAAACAGGTGTGGT+GGG 0.498747 7_3:-77034504 Msa1125550:three_prime_UTR
ATTAAACAGGTGTGGTGGGT+TGG 0.504335 7_3:-77034500 Msa1125550:three_prime_UTR
CTTCTATTAAACAGGTGTGG+TGG 0.504663 7_3:-77034505 Msa1125550:three_prime_UTR
TTTGATAAGTTGATTAACAT+AGG 0.509680 7_3:-77035045 Msa1125550:three_prime_UTR
GTACATAAGGCGATGTATGA+TGG 0.511132 7_3:+77035359 None:intergenic
GAATTATGAGGACAAGCATA+TGG 0.517162 7_3:-77034725 Msa1125550:three_prime_UTR
TTGCACATAGCCAAGAGGTC+AGG 0.517249 7_3:+77035148 None:intergenic
ACCGTATAATGACATAATCA+TGG 0.518108 7_3:-77034546 Msa1125550:three_prime_UTR
CCCAACAGAACGAGCATGAT+CGG 0.532044 7_3:+77035967 None:intergenic
GAACTGGTGGCGTCAATATG+TGG 0.532781 7_3:+77035078 None:intergenic
TCAACTGCGACAATATTTGT+AGG 0.535633 7_3:-77034904 Msa1125550:three_prime_UTR
GTCATAGAACTCTAGAAAGC+AGG 0.537605 7_3:+77035492 None:intergenic
TTTATTACAAAAGTTAAGGA+AGG 0.538052 7_3:-77034786 Msa1125550:three_prime_UTR
TTCATTTCCAAAGAGCATCA+AGG 0.542913 7_3:+77034651 None:intergenic
TACCGGAAAGATTATTGCAA+CGG 0.546187 7_3:-77036113 Msa1125550:CDS
GTTTACTAGATTGAGTTGAT+GGG 0.550046 7_3:-77034584 Msa1125550:three_prime_UTR
AGCTGTAACAAAGAATTTCG+AGG 0.550946 7_3:+77034697 None:intergenic
ACAATGGTAGGAGCCATTGA+TGG 0.564879 7_3:+77035536 None:intergenic
CAAGGAGAAAGAAGTTCAGA+TGG 0.566779 7_3:-77035882 Msa1125550:CDS
ATTCTTCTATTAAACAGGTG+TGG 0.567164 7_3:-77034508 Msa1125550:three_prime_UTR
AATGAAATCGGTAGTGTGGT+AGG 0.569963 7_3:-77034634 Msa1125550:three_prime_UTR
AACTGGTGGCGTCAATATGT+GGG 0.574135 7_3:+77035079 None:intergenic
CAAACATCCACTACAATGGT+AGG 0.582996 7_3:+77035524 None:intergenic
TGGGTGCTTAAGGAATTATG+AGG 0.585630 7_3:-77034737 Msa1125550:three_prime_UTR
GACAATATTTGTAGGACGGA+GGG 0.592262 7_3:-77034896 Msa1125550:three_prime_UTR
AATGGCTCCTACCATTGTAG+TGG 0.602674 7_3:-77035531 Msa1125550:CDS
TCAACTCAATCTAGTAAACC+AGG 0.605659 7_3:+77034588 None:intergenic
AATGCATTAAGTATTGAGAC+CGG 0.605727 7_3:-77034999 Msa1125550:three_prime_UTR
GTTGTGGATTCAAGTGCTCG+TGG 0.610212 7_3:-77036025 Msa1125550:CDS
ATTTGAGGATCGATTTCGAG+AGG 0.616403 7_3:-77036185 Msa1125550:CDS
GCATATAGAAGATGTTGTTG+TGG 0.621571 7_3:-77036041 Msa1125550:CDS
GTGCTCGTGGGAAACAATTG+GGG 0.624260 7_3:-77036012 Msa1125550:CDS
TGGAAATGAAATCGGTAGTG+TGG 0.625238 7_3:-77034638 Msa1125550:three_prime_UTR
CGACAATATTTGTAGGACGG+AGG 0.628838 7_3:-77034897 Msa1125550:three_prime_UTR
CTGCGACAATATTTGTAGGA+CGG 0.635219 7_3:-77034900 Msa1125550:three_prime_UTR
GCATGAAAAGCAGTTCATAG+AGG 0.636091 7_3:-77034826 Msa1125550:three_prime_UTR
CTCAATCTAGTAAACCAGGA+AGG 0.641311 7_3:+77034592 None:intergenic
TTGTGGATTCAAGTGCTCGT+GGG 0.642750 7_3:-77036024 Msa1125550:CDS
AAGTTGATTAACATAGGACA+AGG 0.658019 7_3:-77035039 Msa1125550:three_prime_UTR
CTTGCAAACATCCACTACAA+TGG 0.659022 7_3:+77035520 None:intergenic
AAGGTGTTCTATGAGAAATG+TGG 0.671486 7_3:-77035908 Msa1125550:CDS
TTCGGTTGCACATAGCCAAG+AGG 0.685196 7_3:+77035143 None:intergenic
TTAGAAGATGCAAAACAGTG+AGG 0.719583 7_3:-77036311 None:intergenic
CCGGAAAGATTATTGCAACG+GGG 0.727047 7_3:-77036111 Msa1125550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAAATTTTTAAGAAATTG+TGG - chr7_3:77034637-77034656 Msa1125550:three_prime_UTR 15.0%
!!! ATTTTTTAAAGATTGATATC+AGG + chr7_3:77035247-77035266 None:intergenic 15.0%
!! AAATAAAAAAGGACTATATA+GGG + chr7_3:77036266-77036285 None:intergenic 15.0%
!! AAAATAAAAAAGGACTATAT+AGG + chr7_3:77036267-77036286 None:intergenic 15.0%
!! GATAGTTCAAAAAATAAAAA+AGG + chr7_3:77036277-77036296 None:intergenic 15.0%
!!! TTTGAACTATCTTATTATTT+TGG - chr7_3:77036286-77036305 Msa1125550:CDS 15.0%
!!! AAGAAATTTTTAAGAAATTG+TGG - chr7_3:77034637-77034656 Msa1125550:three_prime_UTR 15.0%
!!! ATTTTTTAAAGATTGATATC+AGG + chr7_3:77035247-77035266 None:intergenic 15.0%
!! AAATAAAAAAGGACTATATA+GGG + chr7_3:77036266-77036285 None:intergenic 15.0%
!! AAAATAAAAAAGGACTATAT+AGG + chr7_3:77036267-77036286 None:intergenic 15.0%
!! GATAGTTCAAAAAATAAAAA+AGG + chr7_3:77036277-77036296 None:intergenic 15.0%
!!! TTTGAACTATCTTATTATTT+TGG - chr7_3:77036286-77036305 Msa1125550:CDS 15.0%
!! TAATCTTTCACTAAAAGAAA+TGG + chr7_3:77035395-77035414 None:intergenic 20.0%
!!! TTTGATAAGTTGATTAACAT+AGG - chr7_3:77035665-77035684 Msa1125550:intron 20.0%
!!! TTTTCTTAATTTGTGTCAAA+TGG - chr7_3:77035783-77035802 Msa1125550:intron 20.0%
!! TCCATTTATTACAAAAGTTA+AGG - chr7_3:77035920-77035939 Msa1125550:CDS 20.0%
!!! TCCTTAACTTTTGTAATAAA+TGG + chr7_3:77035924-77035943 None:intergenic 20.0%
!! TTTATTACAAAAGTTAAGGA+AGG - chr7_3:77035924-77035943 Msa1125550:CDS 20.0%
!! TAATCTTTCACTAAAAGAAA+TGG + chr7_3:77035395-77035414 None:intergenic 20.0%
!!! TTTGATAAGTTGATTAACAT+AGG - chr7_3:77035665-77035684 Msa1125550:intron 20.0%
!!! TTTTCTTAATTTGTGTCAAA+TGG - chr7_3:77035783-77035802 Msa1125550:intron 20.0%
!! TCCATTTATTACAAAAGTTA+AGG - chr7_3:77035920-77035939 Msa1125550:CDS 20.0%
!!! TCCTTAACTTTTGTAATAAA+TGG + chr7_3:77035924-77035943 None:intergenic 20.0%
!! TTTATTACAAAAGTTAAGGA+AGG - chr7_3:77035924-77035943 Msa1125550:CDS 20.0%
! TTAAGAAATTGTGGTAAAGT+TGG - chr7_3:77034646-77034665 Msa1125550:three_prime_UTR 25.0%
! TAAGAAATTGTGGTAAAGTT+GGG - chr7_3:77034647-77034666 Msa1125550:three_prime_UTR 25.0%
!!! TTCTTTTATTTCTCATGTGA+TGG - chr7_3:77034902-77034921 Msa1125550:three_prime_UTR 25.0%
!!! AAAGGCATTGAAAGAATAAA+AGG + chr7_3:77035146-77035165 None:intergenic 25.0%
! AACATTATTCGTAGTACATA+AGG + chr7_3:77035367-77035386 None:intergenic 25.0%
!! TCTGTTATTTACATGTGTTA+TGG - chr7_3:77035467-77035486 Msa1125550:three_prime_UTR 25.0%
!! TCTTATGGTACATTTGAAAT+GGG - chr7_3:77036035-77036054 Msa1125550:CDS 25.0%
! TCCATGATTATGTCATTATA+CGG + chr7_3:77036168-77036187 None:intergenic 25.0%
! TCTTGATTCTTCTATTAAAC+AGG - chr7_3:77036197-77036216 Msa1125550:CDS 25.0%
! TTAAGAAATTGTGGTAAAGT+TGG - chr7_3:77034646-77034665 Msa1125550:three_prime_UTR 25.0%
! TAAGAAATTGTGGTAAAGTT+GGG - chr7_3:77034647-77034666 Msa1125550:three_prime_UTR 25.0%
!!! TTCTTTTATTTCTCATGTGA+TGG - chr7_3:77034902-77034921 Msa1125550:three_prime_UTR 25.0%
!!! AAAGGCATTGAAAGAATAAA+AGG + chr7_3:77035146-77035165 None:intergenic 25.0%
! AACATTATTCGTAGTACATA+AGG + chr7_3:77035367-77035386 None:intergenic 25.0%
!! TCTGTTATTTACATGTGTTA+TGG - chr7_3:77035467-77035486 Msa1125550:three_prime_UTR 25.0%
!! TCTTATGGTACATTTGAAAT+GGG - chr7_3:77036035-77036054 Msa1125550:CDS 25.0%
! TCCATGATTATGTCATTATA+CGG + chr7_3:77036168-77036187 None:intergenic 25.0%
! TCTTGATTCTTCTATTAAAC+AGG - chr7_3:77036197-77036216 Msa1125550:CDS 25.0%
GAGATTACAGACAAGAAAAA+AGG - chr7_3:77034448-77034467 Msa1125550:three_prime_UTR 30.0%
GTTATTGAAGATGAGATTAC+CGG - chr7_3:77034580-77034599 Msa1125550:three_prime_UTR 30.0%
ATTCGCGAAAAGAAAAAACA+AGG + chr7_3:77034876-77034895 None:intergenic 30.0%
! ACGTTTTCTCAAATTATTGC+TGG - chr7_3:77035007-77035026 Msa1125550:three_prime_UTR 30.0%
AACTGCAAACAAACAACAAA+CGG + chr7_3:77035115-77035134 None:intergenic 30.0%
! CCATTGATGGTAGTTAATAA+AGG + chr7_3:77035164-77035183 None:intergenic 30.0%
CCTTTATTAACTACCATCAA+TGG - chr7_3:77035161-77035180 Msa1125550:three_prime_UTR 30.0%
! AAGACATCTTGAAGTACTTA+CGG + chr7_3:77035306-77035325 None:intergenic 30.0%
AGTACTTCAAGATGTCTTTA+AGG - chr7_3:77035308-77035327 Msa1125550:three_prime_UTR 30.0%
GTCTTAAAAGCAGAAAAATG+AGG - chr7_3:77035605-77035624 Msa1125550:intron 30.0%
! AAGTTGATTAACATAGGACA+AGG - chr7_3:77035671-77035690 Msa1125550:intron 30.0%
!! AATGCATTAAGTATTGAGAC+CGG - chr7_3:77035711-77035730 Msa1125550:intron 30.0%
TCATGCCTATATAAAAACAG+AGG - chr7_3:77035850-77035869 Msa1125550:intron 30.0%
!!! TCCATCCTCTGTTTTTATAT+AGG + chr7_3:77035858-77035877 None:intergenic 30.0%
ATATAAAAACAGAGGATGGA+AGG - chr7_3:77035858-77035877 Msa1125550:intron 30.0%
AATTTGCCTGTTCAATGATT+TGG - chr7_3:77035953-77035972 Msa1125550:CDS 30.0%
ATTTGCCTGTTCAATGATTT+GGG - chr7_3:77035954-77035973 Msa1125550:CDS 30.0%
ATTCTTTGTTACAGCTCTTA+TGG - chr7_3:77036020-77036039 Msa1125550:CDS 30.0%
CTCTTATGGTACATTTGAAA+TGG - chr7_3:77036034-77036053 Msa1125550:CDS 30.0%
! ATGCTCTTTGGAAATGAAAT+CGG - chr7_3:77036064-77036083 Msa1125550:CDS 30.0%
!! GTTTACTAGATTGAGTTGAT+GGG - chr7_3:77036126-77036145 Msa1125550:CDS 30.0%
ACCGTATAATGACATAATCA+TGG - chr7_3:77036164-77036183 Msa1125550:CDS 30.0%
ATTCTTCTATTAAACAGGTG+TGG - chr7_3:77036202-77036221 Msa1125550:CDS 30.0%
GAGATTACAGACAAGAAAAA+AGG - chr7_3:77034448-77034467 Msa1125550:three_prime_UTR 30.0%
GTTATTGAAGATGAGATTAC+CGG - chr7_3:77034580-77034599 Msa1125550:three_prime_UTR 30.0%
ATTCGCGAAAAGAAAAAACA+AGG + chr7_3:77034876-77034895 None:intergenic 30.0%
! ACGTTTTCTCAAATTATTGC+TGG - chr7_3:77035007-77035026 Msa1125550:three_prime_UTR 30.0%
AACTGCAAACAAACAACAAA+CGG + chr7_3:77035115-77035134 None:intergenic 30.0%
! CCATTGATGGTAGTTAATAA+AGG + chr7_3:77035164-77035183 None:intergenic 30.0%
CCTTTATTAACTACCATCAA+TGG - chr7_3:77035161-77035180 Msa1125550:three_prime_UTR 30.0%
! AAGACATCTTGAAGTACTTA+CGG + chr7_3:77035306-77035325 None:intergenic 30.0%
AGTACTTCAAGATGTCTTTA+AGG - chr7_3:77035308-77035327 Msa1125550:three_prime_UTR 30.0%
GTCTTAAAAGCAGAAAAATG+AGG - chr7_3:77035605-77035624 Msa1125550:intron 30.0%
! AAGTTGATTAACATAGGACA+AGG - chr7_3:77035671-77035690 Msa1125550:intron 30.0%
!! AATGCATTAAGTATTGAGAC+CGG - chr7_3:77035711-77035730 Msa1125550:intron 30.0%
TCATGCCTATATAAAAACAG+AGG - chr7_3:77035850-77035869 Msa1125550:intron 30.0%
!!! TCCATCCTCTGTTTTTATAT+AGG + chr7_3:77035858-77035877 None:intergenic 30.0%
ATATAAAAACAGAGGATGGA+AGG - chr7_3:77035858-77035877 Msa1125550:intron 30.0%
AATTTGCCTGTTCAATGATT+TGG - chr7_3:77035953-77035972 Msa1125550:CDS 30.0%
ATTTGCCTGTTCAATGATTT+GGG - chr7_3:77035954-77035973 Msa1125550:CDS 30.0%
ATTCTTTGTTACAGCTCTTA+TGG - chr7_3:77036020-77036039 Msa1125550:CDS 30.0%
CTCTTATGGTACATTTGAAA+TGG - chr7_3:77036034-77036053 Msa1125550:CDS 30.0%
! ATGCTCTTTGGAAATGAAAT+CGG - chr7_3:77036064-77036083 Msa1125550:CDS 30.0%
!! GTTTACTAGATTGAGTTGAT+GGG - chr7_3:77036126-77036145 Msa1125550:CDS 30.0%
ACCGTATAATGACATAATCA+TGG - chr7_3:77036164-77036183 Msa1125550:CDS 30.0%
ATTCTTCTATTAAACAGGTG+TGG - chr7_3:77036202-77036221 Msa1125550:CDS 30.0%
GTCTGTAATCTCTAATCTTC+TGG + chr7_3:77034440-77034459 None:intergenic 35.0%
TTGTGATTCAGTCTCTGATA+AGG - chr7_3:77034501-77034520 Msa1125550:three_prime_UTR 35.0%
AGTCTCTGATAAGGAATTTG+AGG - chr7_3:77034510-77034529 Msa1125550:three_prime_UTR 35.0%
TACCGGAAAGATTATTGCAA+CGG - chr7_3:77034597-77034616 Msa1125550:three_prime_UTR 35.0%
GCATATAGAAGATGTTGTTG+TGG - chr7_3:77034669-77034688 Msa1125550:three_prime_UTR 35.0%
! AAGGTGTTCTATGAGAAATG+TGG - chr7_3:77034802-77034821 Msa1125550:three_prime_UTR 35.0%
CTATGAGAAATGTGGTTTCA+AGG - chr7_3:77034810-77034829 Msa1125550:three_prime_UTR 35.0%
TAAACTACATGTGTCATGTC+CGG + chr7_3:77034968-77034987 None:intergenic 35.0%
GATAGTATCAATTGCTGAAG+AGG + chr7_3:77035083-77035102 None:intergenic 35.0%
! GTTGTGCATAGTGTTCATTT+TGG - chr7_3:77035272-77035291 Msa1125550:three_prime_UTR 35.0%
! CTTGAAGTACTTACGGAAAT+AGG + chr7_3:77035299-77035318 None:intergenic 35.0%
GACTAAACAAGCACATGTTT+CGG + chr7_3:77035588-77035607 None:intergenic 35.0%
ATCAAAAACTACAGCTGAAC+TGG + chr7_3:77035651-77035670 None:intergenic 35.0%
ATAGGACAAGGTTGTCTTTA+TGG - chr7_3:77035683-77035702 Msa1125550:intron 35.0%
TCAACTGCGACAATATTTGT+AGG - chr7_3:77035806-77035825 Msa1125550:intron 35.0%
GCCTATATAAAAACAGAGGA+TGG - chr7_3:77035854-77035873 Msa1125550:intron 35.0%
! TTCAATGATTTGGGTGCTTA+AGG - chr7_3:77035963-77035982 Msa1125550:CDS 35.0%
GAATTATGAGGACAAGCATA+TGG - chr7_3:77035985-77036004 Msa1125550:CDS 35.0%
AGCTGTAACAAAGAATTTCG+AGG + chr7_3:77036016-77036035 None:intergenic 35.0%
!! TTCATTTCCAAAGAGCATCA+AGG + chr7_3:77036062-77036081 None:intergenic 35.0%
TCAACTCAATCTAGTAAACC+AGG + chr7_3:77036125-77036144 None:intergenic 35.0%
!! GGTTTACTAGATTGAGTTGA+TGG - chr7_3:77036125-77036144 Msa1125550:CDS 35.0%
TTCTATTAAACAGGTGTGGT+GGG - chr7_3:77036206-77036225 Msa1125550:CDS 35.0%
GTCTGTAATCTCTAATCTTC+TGG + chr7_3:77034440-77034459 None:intergenic 35.0%
TTGTGATTCAGTCTCTGATA+AGG - chr7_3:77034501-77034520 Msa1125550:three_prime_UTR 35.0%
AGTCTCTGATAAGGAATTTG+AGG - chr7_3:77034510-77034529 Msa1125550:three_prime_UTR 35.0%
TACCGGAAAGATTATTGCAA+CGG - chr7_3:77034597-77034616 Msa1125550:three_prime_UTR 35.0%
GCATATAGAAGATGTTGTTG+TGG - chr7_3:77034669-77034688 Msa1125550:three_prime_UTR 35.0%
! AAGGTGTTCTATGAGAAATG+TGG - chr7_3:77034802-77034821 Msa1125550:three_prime_UTR 35.0%
CTATGAGAAATGTGGTTTCA+AGG - chr7_3:77034810-77034829 Msa1125550:three_prime_UTR 35.0%
TAAACTACATGTGTCATGTC+CGG + chr7_3:77034968-77034987 None:intergenic 35.0%
GATAGTATCAATTGCTGAAG+AGG + chr7_3:77035083-77035102 None:intergenic 35.0%
! GTTGTGCATAGTGTTCATTT+TGG - chr7_3:77035272-77035291 Msa1125550:three_prime_UTR 35.0%
! CTTGAAGTACTTACGGAAAT+AGG + chr7_3:77035299-77035318 None:intergenic 35.0%
GACTAAACAAGCACATGTTT+CGG + chr7_3:77035588-77035607 None:intergenic 35.0%
ATCAAAAACTACAGCTGAAC+TGG + chr7_3:77035651-77035670 None:intergenic 35.0%
ATAGGACAAGGTTGTCTTTA+TGG - chr7_3:77035683-77035702 Msa1125550:intron 35.0%
TCAACTGCGACAATATTTGT+AGG - chr7_3:77035806-77035825 Msa1125550:intron 35.0%
GCCTATATAAAAACAGAGGA+TGG - chr7_3:77035854-77035873 Msa1125550:intron 35.0%
! TTCAATGATTTGGGTGCTTA+AGG - chr7_3:77035963-77035982 Msa1125550:CDS 35.0%
GAATTATGAGGACAAGCATA+TGG - chr7_3:77035985-77036004 Msa1125550:CDS 35.0%
AGCTGTAACAAAGAATTTCG+AGG + chr7_3:77036016-77036035 None:intergenic 35.0%
!! TTCATTTCCAAAGAGCATCA+AGG + chr7_3:77036062-77036081 None:intergenic 35.0%
TCAACTCAATCTAGTAAACC+AGG + chr7_3:77036125-77036144 None:intergenic 35.0%
!! GGTTTACTAGATTGAGTTGA+TGG - chr7_3:77036125-77036144 Msa1125550:CDS 35.0%
TTCTATTAAACAGGTGTGGT+GGG - chr7_3:77036206-77036225 Msa1125550:CDS 35.0%
! ATTTGAGGATCGATTTCGAG+AGG - chr7_3:77034525-77034544 Msa1125550:three_prime_UTR 40.0%
! TTTCGAGAGGTTGATTCACT+TGG - chr7_3:77034538-77034557 Msa1125550:three_prime_UTR 40.0%
ACCGGAAAGATTATTGCAAC+GGG - chr7_3:77034598-77034617 Msa1125550:three_prime_UTR 40.0%
! TCGTTCTGTTGGGTGTTATA+AGG - chr7_3:77034753-77034772 Msa1125550:three_prime_UTR 40.0%
CAAGGAGAAAGAAGTTCAGA+TGG - chr7_3:77034828-77034847 Msa1125550:three_prime_UTR 40.0%
! GGTTCTAGTCAGATTGAACA+TGG - chr7_3:77034923-77034942 Msa1125550:three_prime_UTR 40.0%
CAAACATCCACTACAATGGT+AGG + chr7_3:77035189-77035208 None:intergenic 40.0%
CTTGCAAACATCCACTACAA+TGG + chr7_3:77035193-77035212 None:intergenic 40.0%
! GTCATAGAACTCTAGAAAGC+AGG + chr7_3:77035221-77035240 None:intergenic 40.0%
ATGAACACTATGCACAACTC+TGG + chr7_3:77035270-77035289 None:intergenic 40.0%
GTACATAAGGCGATGTATGA+TGG + chr7_3:77035354-77035373 None:intergenic 40.0%
CTCACTGTTATCTGTACTCT+TGG - chr7_3:77035530-77035549 Msa1125550:CDS 40.0%
AAAAACTACAGCTGAACTGG+TGG + chr7_3:77035648-77035667 None:intergenic 40.0%
GATCAGAATTACAGCTGAAC+CGG + chr7_3:77035733-77035752 None:intergenic 40.0%
CTGCGACAATATTTGTAGGA+CGG - chr7_3:77035810-77035829 Msa1125550:intron 40.0%
GACAATATTTGTAGGACGGA+GGG - chr7_3:77035814-77035833 Msa1125550:intron 40.0%
AAAAACAGAGGATGGAAGGA+TGG - chr7_3:77035862-77035881 Msa1125550:intron 40.0%
GCATGAAAAGCAGTTCATAG+AGG - chr7_3:77035884-77035903 Msa1125550:CDS 40.0%
AAGCACCCAAATCATTGAAC+AGG + chr7_3:77035962-77035981 None:intergenic 40.0%
TGGGTGCTTAAGGAATTATG+AGG - chr7_3:77035973-77035992 Msa1125550:CDS 40.0%
TGGAAATGAAATCGGTAGTG+TGG - chr7_3:77036072-77036091 Msa1125550:CDS 40.0%
AATGAAATCGGTAGTGTGGT+AGG - chr7_3:77036076-77036095 Msa1125550:CDS 40.0%
CTCAATCTAGTAAACCAGGA+AGG + chr7_3:77036121-77036140 None:intergenic 40.0%
CTTCTATTAAACAGGTGTGG+TGG - chr7_3:77036205-77036224 Msa1125550:CDS 40.0%
! ATTTGAGGATCGATTTCGAG+AGG - chr7_3:77034525-77034544 Msa1125550:three_prime_UTR 40.0%
! TTTCGAGAGGTTGATTCACT+TGG - chr7_3:77034538-77034557 Msa1125550:three_prime_UTR 40.0%
ACCGGAAAGATTATTGCAAC+GGG - chr7_3:77034598-77034617 Msa1125550:three_prime_UTR 40.0%
! TCGTTCTGTTGGGTGTTATA+AGG - chr7_3:77034753-77034772 Msa1125550:three_prime_UTR 40.0%
CAAGGAGAAAGAAGTTCAGA+TGG - chr7_3:77034828-77034847 Msa1125550:three_prime_UTR 40.0%
! GGTTCTAGTCAGATTGAACA+TGG - chr7_3:77034923-77034942 Msa1125550:three_prime_UTR 40.0%
CAAACATCCACTACAATGGT+AGG + chr7_3:77035189-77035208 None:intergenic 40.0%
CTTGCAAACATCCACTACAA+TGG + chr7_3:77035193-77035212 None:intergenic 40.0%
! GTCATAGAACTCTAGAAAGC+AGG + chr7_3:77035221-77035240 None:intergenic 40.0%
ATGAACACTATGCACAACTC+TGG + chr7_3:77035270-77035289 None:intergenic 40.0%
GTACATAAGGCGATGTATGA+TGG + chr7_3:77035354-77035373 None:intergenic 40.0%
CTCACTGTTATCTGTACTCT+TGG - chr7_3:77035530-77035549 Msa1125550:CDS 40.0%
AAAAACTACAGCTGAACTGG+TGG + chr7_3:77035648-77035667 None:intergenic 40.0%
GATCAGAATTACAGCTGAAC+CGG + chr7_3:77035733-77035752 None:intergenic 40.0%
CTGCGACAATATTTGTAGGA+CGG - chr7_3:77035810-77035829 Msa1125550:intron 40.0%
GACAATATTTGTAGGACGGA+GGG - chr7_3:77035814-77035833 Msa1125550:intron 40.0%
AAAAACAGAGGATGGAAGGA+TGG - chr7_3:77035862-77035881 Msa1125550:intron 40.0%
GCATGAAAAGCAGTTCATAG+AGG - chr7_3:77035884-77035903 Msa1125550:CDS 40.0%
AAGCACCCAAATCATTGAAC+AGG + chr7_3:77035962-77035981 None:intergenic 40.0%
TGGGTGCTTAAGGAATTATG+AGG - chr7_3:77035973-77035992 Msa1125550:CDS 40.0%
TGGAAATGAAATCGGTAGTG+TGG - chr7_3:77036072-77036091 Msa1125550:CDS 40.0%
AATGAAATCGGTAGTGTGGT+AGG - chr7_3:77036076-77036095 Msa1125550:CDS 40.0%
CTCAATCTAGTAAACCAGGA+AGG + chr7_3:77036121-77036140 None:intergenic 40.0%
CTTCTATTAAACAGGTGTGG+TGG - chr7_3:77036205-77036224 Msa1125550:CDS 40.0%
CCCCGTTGCAATAATCTTTC+CGG + chr7_3:77034602-77034621 None:intergenic 45.0%
CCGGAAAGATTATTGCAACG+GGG - chr7_3:77034599-77034618 Msa1125550:three_prime_UTR 45.0%
TTGTGGATTCAAGTGCTCGT+GGG - chr7_3:77034686-77034705 Msa1125550:three_prime_UTR 45.0%
AAGTGCTCGTGGGAAACAAT+TGG - chr7_3:77034696-77034715 Msa1125550:three_prime_UTR 45.0%
AGTGCTCGTGGGAAACAATT+GGG - chr7_3:77034697-77034716 Msa1125550:three_prime_UTR 45.0%
! CGATTGCAGTGTTGAGAACA+AGG - chr7_3:77034783-77034802 Msa1125550:three_prime_UTR 45.0%
GTCAGATTGAACATGGTGTC+TGG - chr7_3:77034930-77034949 Msa1125550:three_prime_UTR 45.0%
TGTCTGGCAAATGTCAATGC+CGG - chr7_3:77034946-77034965 Msa1125550:three_prime_UTR 45.0%
ACAATGGTAGGAGCCATTGA+TGG + chr7_3:77035177-77035196 None:intergenic 45.0%
AATGGCTCCTACCATTGTAG+TGG - chr7_3:77035179-77035198 Msa1125550:three_prime_UTR 45.0%
! AACTGGTGGCGTCAATATGT+GGG + chr7_3:77035634-77035653 None:intergenic 45.0%
CGACAATATTTGTAGGACGG+AGG - chr7_3:77035813-77035832 Msa1125550:intron 45.0%
AATGGGACCTTGATGCTCTT+TGG - chr7_3:77036052-77036071 Msa1125550:CDS 45.0%
!! ATTAAACAGGTGTGGTGGGT+TGG - chr7_3:77036210-77036229 Msa1125550:CDS 45.0%
!! TGGTGGGTTGGACATTATTC+TGG - chr7_3:77036222-77036241 Msa1125550:CDS 45.0%
CCCCGTTGCAATAATCTTTC+CGG + chr7_3:77034602-77034621 None:intergenic 45.0%
CCGGAAAGATTATTGCAACG+GGG - chr7_3:77034599-77034618 Msa1125550:three_prime_UTR 45.0%
TTGTGGATTCAAGTGCTCGT+GGG - chr7_3:77034686-77034705 Msa1125550:three_prime_UTR 45.0%
AAGTGCTCGTGGGAAACAAT+TGG - chr7_3:77034696-77034715 Msa1125550:three_prime_UTR 45.0%
AGTGCTCGTGGGAAACAATT+GGG - chr7_3:77034697-77034716 Msa1125550:three_prime_UTR 45.0%
! CGATTGCAGTGTTGAGAACA+AGG - chr7_3:77034783-77034802 Msa1125550:three_prime_UTR 45.0%
GTCAGATTGAACATGGTGTC+TGG - chr7_3:77034930-77034949 Msa1125550:three_prime_UTR 45.0%
TGTCTGGCAAATGTCAATGC+CGG - chr7_3:77034946-77034965 Msa1125550:three_prime_UTR 45.0%
ACAATGGTAGGAGCCATTGA+TGG + chr7_3:77035177-77035196 None:intergenic 45.0%
AATGGCTCCTACCATTGTAG+TGG - chr7_3:77035179-77035198 Msa1125550:three_prime_UTR 45.0%
! AACTGGTGGCGTCAATATGT+GGG + chr7_3:77035634-77035653 None:intergenic 45.0%
CGACAATATTTGTAGGACGG+AGG - chr7_3:77035813-77035832 Msa1125550:intron 45.0%
AATGGGACCTTGATGCTCTT+TGG - chr7_3:77036052-77036071 Msa1125550:CDS 45.0%
!! ATTAAACAGGTGTGGTGGGT+TGG - chr7_3:77036210-77036229 Msa1125550:CDS 45.0%
!! TGGTGGGTTGGACATTATTC+TGG - chr7_3:77036222-77036241 Msa1125550:CDS 45.0%
GTTGTGGATTCAAGTGCTCG+TGG - chr7_3:77034685-77034704 Msa1125550:three_prime_UTR 50.0%
GTGCTCGTGGGAAACAATTG+GGG - chr7_3:77034698-77034717 Msa1125550:three_prime_UTR 50.0%
ACCGATCATGCTCGTTCTGT+TGG - chr7_3:77034742-77034761 Msa1125550:three_prime_UTR 50.0%
CCCAACAGAACGAGCATGAT+CGG + chr7_3:77034746-77034765 None:intergenic 50.0%
CCGATCATGCTCGTTCTGTT+GGG - chr7_3:77034743-77034762 Msa1125550:three_prime_UTR 50.0%
GCTATTGTAGCCTGACCTCT+TGG - chr7_3:77035552-77035571 Msa1125550:CDS 50.0%
TTGCACATAGCCAAGAGGTC+AGG + chr7_3:77035565-77035584 None:intergenic 50.0%
TTCGGTTGCACATAGCCAAG+AGG + chr7_3:77035570-77035589 None:intergenic 50.0%
! GAACTGGTGGCGTCAATATG+TGG + chr7_3:77035635-77035654 None:intergenic 50.0%
CAGCAGTACATGTTCCTTCC+TGG - chr7_3:77036104-77036123 Msa1125550:CDS 50.0%
GTTGTGGATTCAAGTGCTCG+TGG - chr7_3:77034685-77034704 Msa1125550:three_prime_UTR 50.0%
GTGCTCGTGGGAAACAATTG+GGG - chr7_3:77034698-77034717 Msa1125550:three_prime_UTR 50.0%
ACCGATCATGCTCGTTCTGT+TGG - chr7_3:77034742-77034761 Msa1125550:three_prime_UTR 50.0%
CCCAACAGAACGAGCATGAT+CGG + chr7_3:77034746-77034765 None:intergenic 50.0%
CCGATCATGCTCGTTCTGTT+GGG - chr7_3:77034743-77034762 Msa1125550:three_prime_UTR 50.0%
GCTATTGTAGCCTGACCTCT+TGG - chr7_3:77035552-77035571 Msa1125550:CDS 50.0%
TTGCACATAGCCAAGAGGTC+AGG + chr7_3:77035565-77035584 None:intergenic 50.0%
TTCGGTTGCACATAGCCAAG+AGG + chr7_3:77035570-77035589 None:intergenic 50.0%
! GAACTGGTGGCGTCAATATG+TGG + chr7_3:77035635-77035654 None:intergenic 50.0%
CAGCAGTACATGTTCCTTCC+TGG - chr7_3:77036104-77036123 Msa1125550:CDS 50.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 77034406 77036326 77034406 ID=Msa1125550;Name=Msa1125550
chr7_3 mRNA 77034406 77036326 77034406 ID=Msa1125550-mRNA-1;Parent=Msa1125550;Name=Msa1125550-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0.5|1|1|1|2|1097|181
chr7_3 exon 77034406 77035599 77034406 ID=Msa1125550-mRNA-1:exon:21179;Parent=Msa1125550-mRNA-1
chr7_3 exon 77035878 77036326 77035878 ID=Msa1125550-mRNA-1:exon:21178;Parent=Msa1125550-mRNA-1
chr7_3 CDS 77035878 77036326 77035878 ID=Msa1125550-mRNA-1:cds;Parent=Msa1125550-mRNA-1
chr7_3 CDS 77035503 77035599 77035503 ID=Msa1125550-mRNA-1:cds;Parent=Msa1125550-mRNA-1
chr7_3 three_prime_UTR 77034406 77035502 77034406 ID=Msa1125550-mRNA-1:three_prime_utr;Parent=Msa1125550-mRNA-1
Gene Sequence

>Msa1125550

ATGCAAAACAGTGAGGAACAAAAGTATAGAGCCAGAAGATTAGAGATTACAGACAAGAAAAAAGGTTTCATAGAATTACTACAACAGCTTAGCGTTTGTGATTCAGTCTCTGATAAGGAATTTGAGGATCGATTTCGAGAGGTTGATTCACTTGGAGATGATCATGTTATATGTGTTATTGAAGATGAGATTACCGGAAAGATTATTGCAACGGGGAGTGTGTTTATTGAGAAGAAATTTTTAAGAAATTGTGGTAAAGTTGGGCATATAGAAGATGTTGTTGTGGATTCAAGTGCTCGTGGGAAACAATTGGGGAAGAAAGTAATTAACTTTCTTACCGATCATGCTCGTTCTGTTGGGTGTTATAAGGTAATTCTCGATTGCAGTGTTGAGAACAAGGTGTTCTATGAGAAATGTGGTTTCAAGGAGAAAGAAGTTCAGATGGCTATTTATATAATTCCTTTTATTCTTTCAATGCCTTTATTAACTACCATCAATGGCTCCTACCATTGTAGTGGATGTTTGCAAGAGCAACCTGCTTTCTAG

Protein sequence

>Msa1125550

MQNSEEQKYRARRLEITDKKKGFIELLQQLSVCDSVSDKEFEDRFREVDSLGDDHVICVIEDEITGKIIATGSVFIEKKFLRNCGKVGHIEDVVVDSSARGKQLGKKVINFLTDHARSVGCYKVILDCSVENKVFYEKCGFKEKEVQMAIYIIPFILSMPLLTTINGSYHCSGCLQEQPAF*