AlfalfaGEDB | Msa1401420

M. sativa cultivar zhongmu-4 / Msa1401420

KEGG: K13113|K14964
GO: GO:0000003 GO:0001067 GO:0002376 GO:0002520 GO:0002682 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008013 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008284 GO:0008757 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010154 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018024 GO:0018130 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0022607 GO:0030097 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0034968 GO:0035097 GO:0036211 GO:0042054 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043627 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045595 GO:0045637 GO:0045652 GO:0046483 GO:0048188 GO:0048316 GO:0048366 GO:0048367 GO:0048513 GO:0048518 GO:0048522 GO:0048534 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0051716 GO:0060255 GO:0060776 GO:0061458 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:0090304 GO:0097159 GO:0097659 GO:0099402 GO:0140096 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1903506 GO:1903706 GO:1904837 GO:1905392 GO:1990234 GO:2000026 GO:2000112 GO:2001141
PFAM: PF00622.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1401420	XP_003607362.1	93.939	528	23	2	1	528	1	519	0.0	893

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1401420	sp\|Q9C8J7\|TRO_ARATH	56.696	448	169	5	17	447	70	509	3.16e-159	466

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1401420	G7JRM6	93.939	528	23	2	1	528	1	519	0.0	893

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa1401420	0.803506	3.374906e-49	-8.615850e-47
Msa0005620	Msa1401420	0.808312	3.294824e-50	-8.615850e-47
Msa0010770	Msa1401420	0.835044	2.109722e-56	-8.615850e-47
Msa0017320	Msa1401420	0.814693	1.353114e-51	-8.615850e-47
Msa0017390	Msa1401420	0.813946	1.978941e-51	-8.615850e-47
Msa0022750	Msa1401420	-0.831382	1.723482e-55	-8.615850e-47
Msa0026150	Msa1401420	0.805806	1.117588e-49	-8.615850e-47
Msa0029630	Msa1401420	0.800414	1.457617e-48	-8.615850e-47
Msa0031180	Msa1401420	0.823545	1.307411e-53	-8.615850e-47
Msa0037120	Msa1401420	0.802205	6.265924e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1401420	MtrunA17_Chr4g0039271	93.939	528	23	2	1	528	1	519	0.0	893

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1401420	AT1G51450.1	56.696	448	169	5	17	447	70	509	3.21e-160	466

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Find 163 sgRNAs with CRISPR-Local

Find 400 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATCCAAAAGGTGAAA+AGG	0.459114	tig0022515:-79665	None:intergenic
AAAATCAAATGGAGAGTCGA+AGG	0.593858	tig0022515:+79323	Msa1401420:CDS
AAAGGGGTATAGAATGGTTA+GGG	0.544833	tig0022515:+75973	Msa1401420:CDS
AAATTGATTTACAAATGACT+AGG	0.571172	tig0022515:+79533	Msa1401420:three_prime_UTR
AAATTGGTTCTTCCTTGACA+GGG	0.631947	tig0022515:-75613	None:intergenic
AACAATAACAACCACACGAA+CGG	0.535403	tig0022515:+75806	Msa1401420:CDS
AAGAAATCTTAAGTGTAATA+TGG	0.246510	tig0022515:+79429	Msa1401420:exon
AAGGCTTTGAGGGAGAATTA+TGG	0.304820	tig0022515:+76169	Msa1401420:CDS
AAGTGTATCCATGGAAATTA+GGG	0.338418	tig0022515:-75261	None:intergenic
AAGTTGAGTTGAGTGAGGAT+AGG	0.463307	tig0022515:+75933	Msa1401420:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATTCAATCTGAAAAGAGA+GGG	-	tig0022515:75223-75242	None:intergenic	30.0%
AAGTGTATCCATGGAAATTA+GGG	-	tig0022515:75264-75283	None:intergenic	30.0%
TGTTAATTCCATATCAACCA+CGG	-	tig0022515:75411-75430	None:intergenic	30.0%
GATAAACATATCTTCATCTC+CGG	-	tig0022515:75893-75912	None:intergenic	30.0%
TTTGGATATAGGGATATTGA+TGG	+	tig0022515:76133-76152	Msa1401420:CDS	30.0%
TTGGATATAGGGATATTGAT+GGG	+	tig0022515:76134-76153	Msa1401420:CDS	30.0%
CGAAAAATCAGAATTTGGTT+TGG	+	tig0022515:76263-76282	Msa1401420:CDS	30.0%
GATAGTTATTATTTAGGGGT+GGG	+	tig0022515:76549-76568	Msa1401420:intron	30.0%
ATAGTTATTATTTAGGGGTG+GGG	+	tig0022515:76550-76569	Msa1401420:intron	30.0%
ACGTATATATGGACTTCATA+GGG	-	tig0022515:76674-76693	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0022515	gene	75175	79711	75175	ID=Msa1401420;Name=Msa1401420
tig0022515	mRNA	75175	79711	75175	ID=Msa1401420-mRNA-1;Parent=Msa1401420;Name=Msa1401420-mRNA-1;_AED=0.00;_eAED=0.00;_QI=97\|1\|1\|1\|1\|1\|2\|271\|528
tig0022515	exon	75175	76349	75175	ID=Msa1401420-mRNA-1:exon:18316;Parent=Msa1401420-mRNA-1
tig0022515	exon	78932	79711	78932	ID=Msa1401420-mRNA-1:exon:18317;Parent=Msa1401420-mRNA-1
tig0022515	five_prime_UTR	75175	75271	75175	ID=Msa1401420-mRNA-1:five_prime_utr;Parent=Msa1401420-mRNA-1
tig0022515	CDS	75272	76349	75272	ID=Msa1401420-mRNA-1:cds;Parent=Msa1401420-mRNA-1
tig0022515	CDS	78932	79440	78932	ID=Msa1401420-mRNA-1:cds;Parent=Msa1401420-mRNA-1
tig0022515	three_prime_UTR	79441	79711	79441	ID=Msa1401420-mRNA-1:three_prime_utr;Parent=Msa1401420-mRNA-1

Gene Sequence

>Msa1401420

ATGGATACACTTCAAGCCACATACAAAGATGAAGAGGAAGATGAAGAAATGGTACAACCTTCAACCGTCACAACAACAACTGCACCCTCCGCCGAACCACCTGCTTCCTCCACCGTCGAACCACCCGCTGTCTCCACCGTGGTTGATATGGAATTAACAGACGCGCCTCTCATTACTACCGCCACTCCCTCCAACGACGGAAAATCGGAACTCGATCCCTCCGATGAACCCTCCGACGACTCTGCCGAACAGAAGAATTCACCGAAACAGAAAAGAGAACAACCTTATGAAGATGAAGAAGAACCGCTTCCGAAGAAGCAGAAGCAACTTTCCTCTCTGAACCCTGTCAAGGAAGAACCAATTTCGTTGCCGGAGGTTAACAATGCTGCTGCTGCTGTGTCAATTCCGGCTACAACCACACCGGCGAATGGAACAGCGACAACGAAGAAAACGAAGAAAAAGAATAACAATGTATGGGCAACAAAATCGAAGAAAAAGACGAAGAAAAACAAAAACAACAACAACGGCAACACCAACAATAACAACCACACGAACGGTGGAGAAGATAGTGTTCTGATAACACCAGTACAGAGGTTTCCTGACAAAAGTGACGATACACCGGAGATGAAGATATGTTTATCAAAAGTTTACAAAGCGGAGAAAGTTGAGTTGAGTGAGGATAGGTTAAGTGCAGGGAGCACAAAGGGGTATAGAATGGTTAGGGCAACAAGAGGGGTAGTGGAAGGTGCTTGGTATTTTGAGATAAAGGTAGTGAGGTTAGGGGAGAGTGGGCATACGCGGTTGGGTTGGACAATGGAGAAGGGTGATTTGCAGGCACCAGTTGGGTATGATGGGAATAGTTTTGGATATAGGGATATTGATGGGAGTAAGATTCATAAGGCTTTGAGGGAGAATTATGGGGATGAGGGTTATGGTGAAGGTGATGTTATTGGGTTTTATATTAATTTGCCTGATGGAGATAAGTTTGCTCCGAAAAATCAGAATTTGGTTTGGTATAAAGGACAACGGTATGCTTATAATCCAGATGCTAAGGAAGATCCACCTAAAGTTGTACCTGGAAGTGAGATATCTTTCTTCAAAAATGGTGTATGTCAAGGCGTAGCTTTCAAAGACCTCTATGGCGGTCGTTACTATCCTGCTGCTTCAATGTATACTCTTCCCCATGAACAAAACTGCACAGTTAAGTTCAATTTTGGTCCGGACTTCGAATTTTTCCCTCATGATTTCAATGAACGGCCAATTCCCAAGCCAATGGTTGAAGTTCCTCATCATGGTTTTGAAAATCAAGTTGAAAATGGGGCGTTGACTGAGAAGAAATCTAATGGAGAGTTGAATGAGAGTAAATCAAATGGAGAGTTGACTGTGAAGAAATCAACAGGAGAGTCGACTGAGAAGAAATCAAATGGAGAGTCGACTGAGAAGAAATCAAATGGAGAGTCATACGAGCAAAAATCAAATGGAGAGTCGAAGGAGATGAAATCAGATGAAGAGGCGAAGGAGAAGAAATCAGATGAAGAGTTGAATGAGAAGAAATCAGATGAAGAGGCAGAAGAGAAGAAATCTTAA

Protein sequence

>Msa1401420

MDTLQATYKDEEEDEEMVQPSTVTTTTAPSAEPPASSTVEPPAVSTVVDMELTDAPLITTATPSNDGKSELDPSDEPSDDSAEQKNSPKQKREQPYEDEEEPLPKKQKQLSSLNPVKEEPISLPEVNNAAAAVSIPATTTPANGTATTKKTKKKNNNVWATKSKKKTKKNKNNNNGNTNNNNHTNGGEDSVLITPVQRFPDKSDDTPEMKICLSKVYKAEKVELSEDRLSAGSTKGYRMVRATRGVVEGAWYFEIKVVRLGESGHTRLGWTMEKGDLQAPVGYDGNSFGYRDIDGSKIHKALRENYGDEGYGEGDVIGFYINLPDGDKFAPKNQNLVWYKGQRYAYNPDAKEDPPKVVPGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYTLPHEQNCTVKFNFGPDFEFFPHDFNERPIPKPMVEVPHHGFENQVENGALTEKKSNGELNESKSNGELTVKKSTGESTEKKSNGESTEKKSNGESYEQKSNGESKEMKSDEEAKEKKSDEELNEKKSDEEAEEKKS*