AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0264640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264640 MtrunA17_Chr5g0442931 100.000 178 0 0 1 178 1 178 2.99e-133 370
Msa0264640 MtrunA17_Chr5g0442901 100.000 178 0 0 1 178 1 178 2.99e-133 370
Msa0264640 MtrunA17_Chr2g0328821 100.000 178 0 0 1 178 17 194 3.33e-133 370
Msa0264640 MtrunA17_Chr3g0095911 94.382 178 10 0 1 178 1 178 2.58e-125 350
Msa0264640 MtrunA17_Chr2g0286131 62.353 85 32 0 92 176 1 85 2.93e-34 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264640 AT2G34480.1 90.230 174 17 0 5 178 5 178 3.01e-119 335
Msa0264640 AT2G34480.2 90.230 174 17 0 5 178 44 217 3.24e-119 336
Msa0264640 AT1G29965.1 87.079 178 23 0 1 178 1 178 1.24e-117 330
Msa0264640 AT3G14600.1 87.079 178 23 0 1 178 1 178 4.20e-117 329
Msa0264640 AT1G29970.2 89.017 173 19 0 6 178 140 312 1.08e-114 328

Find 62 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCAATGGGAACTTGATTT+TGG 0.119520 2_2:-64579857 None:intergenic
AGATTAAGAACTATGGAATT+TGG 0.243479 2_2:+64579635 Msa0264640:CDS
GAAAAGTAATGGACAAGTTT+TGG 0.246012 2_2:+64578903 Msa0264640:CDS
GTTGGGCTTCTTAGCTTTGT+AGG 0.272211 2_2:-64579920 None:intergenic
ACTACAATCAGCTCGGAAAA+TGG 0.314844 2_2:+64578545 Msa0264640:exon
ACGAAATGGCATCTCGTCAT+AGG 0.320455 2_2:+64579746 Msa0264640:CDS
AGATTTATCGCATGAAGCTT+TGG 0.333905 2_2:+64578728 Msa0264640:CDS
GATTTATCGCATGAAGCTTT+GGG 0.349457 2_2:+64578729 Msa0264640:CDS
GTCAGTACTTTAAGAGCTTT+CGG 0.352974 2_2:+64580004 Msa0264640:three_prime_UTR
TGTTTGTGCACTCTTATTGC+TGG 0.354017 2_2:+64580228 Msa0264640:three_prime_UTR
CCTACCAAGATTAAGAACTA+TGG 0.366976 2_2:+64579628 Msa0264640:CDS
AACTTACCAGAACTTGGATT+TGG 0.367421 2_2:-64578770 None:intergenic
TCCCAGCTAATCTGTGCAAA+AGG 0.391912 2_2:+64579809 Msa0264640:CDS
AATTCCATAGTTCTTAATCT+TGG 0.403701 2_2:-64579632 None:intergenic
ATTCACTGAATCACATAAAC+AGG 0.404006 2_2:-64579942 None:intergenic
CATTGGTGTACAAGAAGATT+AGG 0.404454 2_2:+64579872 Msa0264640:CDS
AGCTTCATGCGATAAATCTT+AGG 0.407205 2_2:-64578724 None:intergenic
CTGTCTGAGTTTGCTGGTAA+TGG 0.414348 2_2:-64580051 None:intergenic
TGGTGGCGGTCTTAATGATC+TGG 0.424945 2_2:-64579786 None:intergenic
TACCGTGATACTACTCTAAA+CGG 0.448863 2_2:+64579703 Msa0264640:CDS
ATAAGGAACTTACCAGAACT+TGG 0.449276 2_2:-64578776 None:intergenic
ACAAAATACTTGATAAATAA+CGG 0.456124 2_2:-64580093 None:intergenic
TTCGTGCCAAATCCAAGTTC+TGG 0.468779 2_2:+64578764 Msa0264640:CDS
CGAACACTGTCTGAGTTTGC+TGG 0.479837 2_2:-64580057 None:intergenic
CTGAATCACATAAACAGGTT+GGG 0.486125 2_2:-64579937 None:intergenic
CTCTTCCGACAACCTGGTAC+TGG 0.487827 2_2:-64578675 None:intergenic
TTTCTTGAGGAAGTTGAAGA+AGG 0.490067 2_2:+64578876 Msa0264640:CDS
TAATCTTCTTGTACACCAAT+GGG 0.498182 2_2:-64579870 None:intergenic
TGGCATCTCGTCATAGGGTC+AGG 0.499078 2_2:+64579752 Msa0264640:CDS
TTGCGTTATCAGAGTCGTAC+TGG 0.505845 2_2:+64579658 Msa0264640:CDS
AGAAGATTAGGCCTCCTACT+AGG 0.511127 2_2:+64579884 Msa0264640:CDS
TCCACAGTTTCACCAGTACC+AGG 0.511898 2_2:+64578663 Msa0264640:intron
TTGATGTACCGGTACAAGCT+TGG 0.513924 2_2:+64580154 Msa0264640:three_prime_UTR
AAGAAGGTTAAGAAAAGTAA+TGG 0.518066 2_2:+64578892 Msa0264640:CDS
TTTGCACAGATTAGCTGGGA+TGG 0.520373 2_2:-64579806 None:intergenic
GGAGACAATGTACAACGAAA+TGG 0.522780 2_2:+64579732 Msa0264640:CDS
CAAGCAACTCTAACATGAGA+AGG 0.524095 2_2:-64579973 None:intergenic
CCCAGCTAATCTGTGCAAAA+GGG 0.524734 2_2:+64579810 Msa0264640:CDS
AAGAGCACTTCCCACCGAAA+AGG 0.530461 2_2:+64578693 Msa0264640:CDS
TTTCACCAGTACCAGGTTGT+CGG 0.538716 2_2:+64578670 Msa0264640:CDS
CTAATCTTCTTGTACACCAA+TGG 0.540589 2_2:-64579871 None:intergenic
CGAAATGGCATCTCGTCATA+GGG 0.541059 2_2:+64579747 Msa0264640:CDS
CCATAGTTCTTAATCTTGGT+AGG 0.548600 2_2:-64579628 None:intergenic
TCGGAAAATGGTTAACGCTA+AGG 0.552440 2_2:+64578557 Msa0264640:exon
GGATTTGGCACGAACCTCGT+TGG 0.555937 2_2:-64578755 None:intergenic
CAGATTAGCTGGGATGGTGG+CGG 0.559030 2_2:-64579800 None:intergenic
TTCCAAAATCAAGTTCCCAT+TGG 0.559786 2_2:+64579855 Msa0264640:CDS
ACTGAATCACATAAACAGGT+TGG 0.563649 2_2:-64579938 None:intergenic
ATGCTAATAGCTAATGAGCT+AGG 0.567864 2_2:+64580267 Msa0264640:three_prime_UTR
ATTCAAAACCAAGCTTGTAC+CGG 0.570756 2_2:-64580162 None:intergenic
GTCTTAATGATCTGGATGCA+AGG 0.582689 2_2:-64579778 None:intergenic
GAAGTGCTCTTCCGACAACC+TGG 0.588662 2_2:-64578681 None:intergenic
GCACAGATTAGCTGGGATGG+TGG 0.592241 2_2:-64579803 None:intergenic
AAGCAACTCTAACATGAGAA+GGG 0.603748 2_2:-64579972 None:intergenic
GCTGATGAACGAAGCTGTGT+TGG 0.604991 2_2:+64580298 Msa0264640:three_prime_UTR
TGGTTATCACAATATGTACA+AGG 0.613559 2_2:+64579678 Msa0264640:CDS
ACAGAAAACTACAATCAGCT+CGG 0.620129 2_2:+64578538 Msa0264640:five_prime_UTR
TACTACTCTAAACGGTGCTG+TGG 0.650976 2_2:+64579711 Msa0264640:CDS
ATTGTTGTAGGTATTTCTTG+AGG 0.651477 2_2:+64578863 Msa0264640:intron
CACCGTTTAGAGTAGTATCA+CGG 0.660256 2_2:-64579705 None:intergenic
TACTTGATAAATAACGGACT+AGG 0.668215 2_2:-64580087 None:intergenic
GAAGCTTTGGGCAACCAACG+AGG 0.727612 2_2:+64578741 Msa0264640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAATGTTAATTGTTGT+AGG + chr2_2:64578851-64578870 Msa0264640:intron 15.0%
!! ACAAAATACTTGATAAATAA+CGG - chr2_2:64580096-64580115 None:intergenic 15.0%
!! TTAATAATGTTAATTGTTGT+AGG + chr2_2:64578851-64578870 Msa0264640:intron 15.0%
!! ACAAAATACTTGATAAATAA+CGG - chr2_2:64580096-64580115 None:intergenic 15.0%
!! TGTATCAAATTTGAATTAAG+AGG - chr2_2:64578962-64578981 None:intergenic 20.0%
!! ATTCAAATTTGATACAACTT+AGG + chr2_2:64578966-64578985 Msa0264640:intron 20.0%
!! AAATCATTGAAATGTCATAT+AGG - chr2_2:64579083-64579102 None:intergenic 20.0%
!! TTGTTGTAACATATCTATTA+AGG + chr2_2:64579308-64579327 Msa0264640:intron 20.0%
!! AAAGATCTGCAATAAAAAAA+AGG - chr2_2:64579599-64579618 None:intergenic 20.0%
!! TGTATCAAATTTGAATTAAG+AGG - chr2_2:64578962-64578981 None:intergenic 20.0%
!! ATTCAAATTTGATACAACTT+AGG + chr2_2:64578966-64578985 Msa0264640:intron 20.0%
!! AAATCATTGAAATGTCATAT+AGG - chr2_2:64579083-64579102 None:intergenic 20.0%
!! TTGTTGTAACATATCTATTA+AGG + chr2_2:64579308-64579327 Msa0264640:intron 20.0%
!! AAAGATCTGCAATAAAAAAA+AGG - chr2_2:64579599-64579618 None:intergenic 20.0%
! AAGAAGGTTAAGAAAAGTAA+TGG + chr2_2:64578892-64578911 Msa0264640:CDS 25.0%
! TTATGTCAAAATCCAAACAT+AGG + chr2_2:64579278-64579297 Msa0264640:intron 25.0%
! AATAGATATGTTACAACAAC+AGG - chr2_2:64579307-64579326 None:intergenic 25.0%
! CGTATTGTTTCAATTATTCT+AGG + chr2_2:64579460-64579479 Msa0264640:intron 25.0%
! CAATTATTCTAGGCAAAATA+AGG + chr2_2:64579470-64579489 Msa0264640:intron 25.0%
! AATTCCATAGTTCTTAATCT+TGG - chr2_2:64579635-64579654 None:intergenic 25.0%
! AGATTAAGAACTATGGAATT+TGG + chr2_2:64579635-64579654 Msa0264640:CDS 25.0%
!! TTTTTCTCTTTTTGATGTAC+CGG + chr2_2:64580143-64580162 Msa0264640:three_prime_UTR 25.0%
!!! TAGTGAACTTTTTGTTTTGA+AGG + chr2_2:64580186-64580205 Msa0264640:three_prime_UTR 25.0%
! AAGAAGGTTAAGAAAAGTAA+TGG + chr2_2:64578892-64578911 Msa0264640:CDS 25.0%
! TTATGTCAAAATCCAAACAT+AGG + chr2_2:64579278-64579297 Msa0264640:intron 25.0%
! AATAGATATGTTACAACAAC+AGG - chr2_2:64579307-64579326 None:intergenic 25.0%
! CGTATTGTTTCAATTATTCT+AGG + chr2_2:64579460-64579479 Msa0264640:intron 25.0%
! CAATTATTCTAGGCAAAATA+AGG + chr2_2:64579470-64579489 Msa0264640:intron 25.0%
! AATTCCATAGTTCTTAATCT+TGG - chr2_2:64579635-64579654 None:intergenic 25.0%
! AGATTAAGAACTATGGAATT+TGG + chr2_2:64579635-64579654 Msa0264640:CDS 25.0%
!! TTTTTCTCTTTTTGATGTAC+CGG + chr2_2:64580143-64580162 Msa0264640:three_prime_UTR 25.0%
!!! TAGTGAACTTTTTGTTTTGA+AGG + chr2_2:64580186-64580205 Msa0264640:three_prime_UTR 25.0%
TTTGTGTGTGAATCTTAACA+CGG + chr2_2:64578625-64578644 Msa0264640:intron 30.0%
ATTGTTGTAGGTATTTCTTG+AGG + chr2_2:64578863-64578882 Msa0264640:intron 30.0%
!!! GAAAAGTAATGGACAAGTTT+TGG + chr2_2:64578903-64578922 Msa0264640:CDS 30.0%
TCATAAACTGTATCATGGAA+TGG - chr2_2:64579122-64579141 None:intergenic 30.0%
ACAAGTCATAAACTGTATCA+TGG - chr2_2:64579127-64579146 None:intergenic 30.0%
!! TGACTTGTTTGAAAGTACTT+TGG + chr2_2:64579139-64579158 Msa0264640:intron 30.0%
!! TTGTTTGAAAGTACTTTGGT+TGG + chr2_2:64579143-64579162 Msa0264640:intron 30.0%
!! TGTTTGAAAGTACTTTGGTT+GGG + chr2_2:64579144-64579163 Msa0264640:intron 30.0%
AATTGTGGTGAAAGAATATG+TGG + chr2_2:64579495-64579514 Msa0264640:intron 30.0%
TAACAACTAAAGCAAACACA+GGG - chr2_2:64579531-64579550 None:intergenic 30.0%
ATAACAACTAAAGCAAACAC+AGG - chr2_2:64579532-64579551 None:intergenic 30.0%
TGGTTATCACAATATGTACA+AGG + chr2_2:64579678-64579697 Msa0264640:CDS 30.0%
TAATCTTCTTGTACACCAAT+GGG - chr2_2:64579873-64579892 None:intergenic 30.0%
!!! TAGCTTTGTAGGTTGTTTTT+AGG - chr2_2:64579912-64579931 None:intergenic 30.0%
ATTCACTGAATCACATAAAC+AGG - chr2_2:64579945-64579964 None:intergenic 30.0%
!! TACTTGATAAATAACGGACT+AGG - chr2_2:64580090-64580109 None:intergenic 30.0%
!!! TGAACTTTTTGTTTTGAAGG+AGG + chr2_2:64580189-64580208 Msa0264640:three_prime_UTR 30.0%
!!! GAACTTTTTGTTTTGAAGGA+GGG + chr2_2:64580190-64580209 Msa0264640:three_prime_UTR 30.0%
TTTGTGTGTGAATCTTAACA+CGG + chr2_2:64578625-64578644 Msa0264640:intron 30.0%
ATTGTTGTAGGTATTTCTTG+AGG + chr2_2:64578863-64578882 Msa0264640:intron 30.0%
!!! GAAAAGTAATGGACAAGTTT+TGG + chr2_2:64578903-64578922 Msa0264640:CDS 30.0%
TCATAAACTGTATCATGGAA+TGG - chr2_2:64579122-64579141 None:intergenic 30.0%
ACAAGTCATAAACTGTATCA+TGG - chr2_2:64579127-64579146 None:intergenic 30.0%
!! TGACTTGTTTGAAAGTACTT+TGG + chr2_2:64579139-64579158 Msa0264640:intron 30.0%
!! TTGTTTGAAAGTACTTTGGT+TGG + chr2_2:64579143-64579162 Msa0264640:intron 30.0%
!! TGTTTGAAAGTACTTTGGTT+GGG + chr2_2:64579144-64579163 Msa0264640:intron 30.0%
AATTGTGGTGAAAGAATATG+TGG + chr2_2:64579495-64579514 Msa0264640:intron 30.0%
TAACAACTAAAGCAAACACA+GGG - chr2_2:64579531-64579550 None:intergenic 30.0%
ATAACAACTAAAGCAAACAC+AGG - chr2_2:64579532-64579551 None:intergenic 30.0%
TGGTTATCACAATATGTACA+AGG + chr2_2:64579678-64579697 Msa0264640:CDS 30.0%
TAATCTTCTTGTACACCAAT+GGG - chr2_2:64579873-64579892 None:intergenic 30.0%
!!! TAGCTTTGTAGGTTGTTTTT+AGG - chr2_2:64579912-64579931 None:intergenic 30.0%
ATTCACTGAATCACATAAAC+AGG - chr2_2:64579945-64579964 None:intergenic 30.0%
!! TACTTGATAAATAACGGACT+AGG - chr2_2:64580090-64580109 None:intergenic 30.0%
!!! TGAACTTTTTGTTTTGAAGG+AGG + chr2_2:64580189-64580208 Msa0264640:three_prime_UTR 30.0%
!!! GAACTTTTTGTTTTGAAGGA+GGG + chr2_2:64580190-64580209 Msa0264640:three_prime_UTR 30.0%
ACAGAAAACTACAATCAGCT+CGG + chr2_2:64578538-64578557 Msa0264640:five_prime_UTR 35.0%
! CTTAGGATGTTCATCCTTTT+CGG - chr2_2:64578710-64578729 None:intergenic 35.0%
AGCTTCATGCGATAAATCTT+AGG - chr2_2:64578727-64578746 None:intergenic 35.0%
AGATTTATCGCATGAAGCTT+TGG + chr2_2:64578728-64578747 Msa0264640:CDS 35.0%
GATTTATCGCATGAAGCTTT+GGG + chr2_2:64578729-64578748 Msa0264640:CDS 35.0%
AACTTACCAGAACTTGGATT+TGG - chr2_2:64578773-64578792 None:intergenic 35.0%
ATAAGGAACTTACCAGAACT+TGG - chr2_2:64578779-64578798 None:intergenic 35.0%
TTTCTTGAGGAAGTTGAAGA+AGG + chr2_2:64578876-64578895 Msa0264640:CDS 35.0%
!!! ACAAGTTTTGGCTATCAATG+AGG + chr2_2:64578915-64578934 Msa0264640:CDS 35.0%
! AAAGTACTTTGGTTGGGAAA+GGG + chr2_2:64579150-64579169 Msa0264640:intron 35.0%
!!! TGTTCTGTTTTGATTAGTGC+TGG + chr2_2:64579175-64579194 Msa0264640:intron 35.0%
!!! GTTCTGTTTTGATTAGTGCT+GGG + chr2_2:64579176-64579195 Msa0264640:intron 35.0%
ACAGCTTACACTCAAATGTT+TGG - chr2_2:64579242-64579261 None:intergenic 35.0%
AACAACAGGTTACCTATGTT+TGG - chr2_2:64579293-64579312 None:intergenic 35.0%
TGTCTTGAGTATTTCCTAGA+GGG + chr2_2:64579371-64579390 Msa0264640:intron 35.0%
TCAGCTATGAAATTAGTCAC+TGG - chr2_2:64579410-64579429 None:intergenic 35.0%
AGGCAAAATAAGGCTAATTG+TGG + chr2_2:64579480-64579499 Msa0264640:intron 35.0%
! TTTTTGGACATAGGGGTTTA+TGG + chr2_2:64579571-64579590 Msa0264640:intron 35.0%
CCATAGTTCTTAATCTTGGT+AGG - chr2_2:64579631-64579650 None:intergenic 35.0%
CCTACCAAGATTAAGAACTA+TGG + chr2_2:64579628-64579647 Msa0264640:CDS 35.0%
TACCGTGATACTACTCTAAA+CGG + chr2_2:64579703-64579722 Msa0264640:CDS 35.0%
!!! GGAACTTGATTTTGGAATTG+TGG - chr2_2:64579852-64579871 None:intergenic 35.0%
TTCCAAAATCAAGTTCCCAT+TGG + chr2_2:64579855-64579874 Msa0264640:CDS 35.0%
CTAATCTTCTTGTACACCAA+TGG - chr2_2:64579874-64579893 None:intergenic 35.0%
CATTGGTGTACAAGAAGATT+AGG + chr2_2:64579872-64579891 Msa0264640:CDS 35.0%
CTGAATCACATAAACAGGTT+GGG - chr2_2:64579940-64579959 None:intergenic 35.0%
ACTGAATCACATAAACAGGT+TGG - chr2_2:64579941-64579960 None:intergenic 35.0%
AAGCAACTCTAACATGAGAA+GGG - chr2_2:64579975-64579994 None:intergenic 35.0%
! GTCAGTACTTTAAGAGCTTT+CGG + chr2_2:64580004-64580023 Msa0264640:three_prime_UTR 35.0%
ATTCAAAACCAAGCTTGTAC+CGG - chr2_2:64580165-64580184 None:intergenic 35.0%
ATGCTAATAGCTAATGAGCT+AGG + chr2_2:64580267-64580286 Msa0264640:three_prime_UTR 35.0%
ACAGAAAACTACAATCAGCT+CGG + chr2_2:64578538-64578557 Msa0264640:five_prime_UTR 35.0%
! CTTAGGATGTTCATCCTTTT+CGG - chr2_2:64578710-64578729 None:intergenic 35.0%
AGCTTCATGCGATAAATCTT+AGG - chr2_2:64578727-64578746 None:intergenic 35.0%
AGATTTATCGCATGAAGCTT+TGG + chr2_2:64578728-64578747 Msa0264640:CDS 35.0%
GATTTATCGCATGAAGCTTT+GGG + chr2_2:64578729-64578748 Msa0264640:CDS 35.0%
AACTTACCAGAACTTGGATT+TGG - chr2_2:64578773-64578792 None:intergenic 35.0%
ATAAGGAACTTACCAGAACT+TGG - chr2_2:64578779-64578798 None:intergenic 35.0%
TTTCTTGAGGAAGTTGAAGA+AGG + chr2_2:64578876-64578895 Msa0264640:CDS 35.0%
!!! ACAAGTTTTGGCTATCAATG+AGG + chr2_2:64578915-64578934 Msa0264640:CDS 35.0%
! AAAGTACTTTGGTTGGGAAA+GGG + chr2_2:64579150-64579169 Msa0264640:intron 35.0%
!!! TGTTCTGTTTTGATTAGTGC+TGG + chr2_2:64579175-64579194 Msa0264640:intron 35.0%
!!! GTTCTGTTTTGATTAGTGCT+GGG + chr2_2:64579176-64579195 Msa0264640:intron 35.0%
ACAGCTTACACTCAAATGTT+TGG - chr2_2:64579242-64579261 None:intergenic 35.0%
AACAACAGGTTACCTATGTT+TGG - chr2_2:64579293-64579312 None:intergenic 35.0%
TGTCTTGAGTATTTCCTAGA+GGG + chr2_2:64579371-64579390 Msa0264640:intron 35.0%
TCAGCTATGAAATTAGTCAC+TGG - chr2_2:64579410-64579429 None:intergenic 35.0%
AGGCAAAATAAGGCTAATTG+TGG + chr2_2:64579480-64579499 Msa0264640:intron 35.0%
! TTTTTGGACATAGGGGTTTA+TGG + chr2_2:64579571-64579590 Msa0264640:intron 35.0%
CCATAGTTCTTAATCTTGGT+AGG - chr2_2:64579631-64579650 None:intergenic 35.0%
CCTACCAAGATTAAGAACTA+TGG + chr2_2:64579628-64579647 Msa0264640:CDS 35.0%
TACCGTGATACTACTCTAAA+CGG + chr2_2:64579703-64579722 Msa0264640:CDS 35.0%
!!! GGAACTTGATTTTGGAATTG+TGG - chr2_2:64579852-64579871 None:intergenic 35.0%
TTCCAAAATCAAGTTCCCAT+TGG + chr2_2:64579855-64579874 Msa0264640:CDS 35.0%
CTAATCTTCTTGTACACCAA+TGG - chr2_2:64579874-64579893 None:intergenic 35.0%
CATTGGTGTACAAGAAGATT+AGG + chr2_2:64579872-64579891 Msa0264640:CDS 35.0%
CTGAATCACATAAACAGGTT+GGG - chr2_2:64579940-64579959 None:intergenic 35.0%
ACTGAATCACATAAACAGGT+TGG - chr2_2:64579941-64579960 None:intergenic 35.0%
AAGCAACTCTAACATGAGAA+GGG - chr2_2:64579975-64579994 None:intergenic 35.0%
! GTCAGTACTTTAAGAGCTTT+CGG + chr2_2:64580004-64580023 Msa0264640:three_prime_UTR 35.0%
ATTCAAAACCAAGCTTGTAC+CGG - chr2_2:64580165-64580184 None:intergenic 35.0%
ATGCTAATAGCTAATGAGCT+AGG + chr2_2:64580267-64580286 Msa0264640:three_prime_UTR 35.0%
ACTACAATCAGCTCGGAAAA+TGG + chr2_2:64578545-64578564 Msa0264640:exon 40.0%
TCGGAAAATGGTTAACGCTA+AGG + chr2_2:64578557-64578576 Msa0264640:exon 40.0%
GATACAACTTAGGCTGTGTT+TGG + chr2_2:64578976-64578995 Msa0264640:intron 40.0%
ATACCGAACAAGTGCTTCTA+GGG - chr2_2:64579038-64579057 None:intergenic 40.0%
AATACCGAACAAGTGCTTCT+AGG - chr2_2:64579039-64579058 None:intergenic 40.0%
!! GAAAGTACTTTGGTTGGGAA+AGG + chr2_2:64579149-64579168 Msa0264640:intron 40.0%
! CTCTAGGAAATACTCAAGAC+AGG - chr2_2:64579372-64579391 None:intergenic 40.0%
CTGTCTTGAGTATTTCCTAG+AGG + chr2_2:64579370-64579389 Msa0264640:intron 40.0%
GTTTCATGCTAAAACCCTCT+AGG - chr2_2:64579388-64579407 None:intergenic 40.0%
GGTGAAAGAATATGTGGAGT+AGG + chr2_2:64579501-64579520 Msa0264640:intron 40.0%
! ACCTTCAACTGCAGTCTTTT+TGG + chr2_2:64579555-64579574 Msa0264640:intron 40.0%
TCCAAAAAGACTGCAGTTGA+AGG - chr2_2:64579559-64579578 None:intergenic 40.0%
! ACTGCAGTCTTTTTGGACAT+AGG + chr2_2:64579562-64579581 Msa0264640:intron 40.0%
! CTGCAGTCTTTTTGGACATA+GGG + chr2_2:64579563-64579582 Msa0264640:intron 40.0%
! TGCAGTCTTTTTGGACATAG+GGG + chr2_2:64579564-64579583 Msa0264640:intron 40.0%
! CACCGTTTAGAGTAGTATCA+CGG - chr2_2:64579708-64579727 None:intergenic 40.0%
GGAGACAATGTACAACGAAA+TGG + chr2_2:64579732-64579751 Msa0264640:CDS 40.0%
GTCTTAATGATCTGGATGCA+AGG - chr2_2:64579781-64579800 None:intergenic 40.0%
! CACCAATGGGAACTTGATTT+TGG - chr2_2:64579860-64579879 None:intergenic 40.0%
!!! GTTGTTTTTAGGCTCCTAGT+AGG - chr2_2:64579901-64579920 None:intergenic 40.0%
CAAGCAACTCTAACATGAGA+AGG - chr2_2:64579976-64579995 None:intergenic 40.0%
TGTTTGTGCACTCTTATTGC+TGG + chr2_2:64580228-64580247 Msa0264640:three_prime_UTR 40.0%
ACTACAATCAGCTCGGAAAA+TGG + chr2_2:64578545-64578564 Msa0264640:exon 40.0%
TCGGAAAATGGTTAACGCTA+AGG + chr2_2:64578557-64578576 Msa0264640:exon 40.0%
GATACAACTTAGGCTGTGTT+TGG + chr2_2:64578976-64578995 Msa0264640:intron 40.0%
ATACCGAACAAGTGCTTCTA+GGG - chr2_2:64579038-64579057 None:intergenic 40.0%
AATACCGAACAAGTGCTTCT+AGG - chr2_2:64579039-64579058 None:intergenic 40.0%
!! GAAAGTACTTTGGTTGGGAA+AGG + chr2_2:64579149-64579168 Msa0264640:intron 40.0%
! CTCTAGGAAATACTCAAGAC+AGG - chr2_2:64579372-64579391 None:intergenic 40.0%
CTGTCTTGAGTATTTCCTAG+AGG + chr2_2:64579370-64579389 Msa0264640:intron 40.0%
GTTTCATGCTAAAACCCTCT+AGG - chr2_2:64579388-64579407 None:intergenic 40.0%
GGTGAAAGAATATGTGGAGT+AGG + chr2_2:64579501-64579520 Msa0264640:intron 40.0%
! ACCTTCAACTGCAGTCTTTT+TGG + chr2_2:64579555-64579574 Msa0264640:intron 40.0%
TCCAAAAAGACTGCAGTTGA+AGG - chr2_2:64579559-64579578 None:intergenic 40.0%
! ACTGCAGTCTTTTTGGACAT+AGG + chr2_2:64579562-64579581 Msa0264640:intron 40.0%
! CTGCAGTCTTTTTGGACATA+GGG + chr2_2:64579563-64579582 Msa0264640:intron 40.0%
! TGCAGTCTTTTTGGACATAG+GGG + chr2_2:64579564-64579583 Msa0264640:intron 40.0%
! CACCGTTTAGAGTAGTATCA+CGG - chr2_2:64579708-64579727 None:intergenic 40.0%
GGAGACAATGTACAACGAAA+TGG + chr2_2:64579732-64579751 Msa0264640:CDS 40.0%
GTCTTAATGATCTGGATGCA+AGG - chr2_2:64579781-64579800 None:intergenic 40.0%
! CACCAATGGGAACTTGATTT+TGG - chr2_2:64579860-64579879 None:intergenic 40.0%
!!! GTTGTTTTTAGGCTCCTAGT+AGG - chr2_2:64579901-64579920 None:intergenic 40.0%
CAAGCAACTCTAACATGAGA+AGG - chr2_2:64579976-64579995 None:intergenic 40.0%
TGTTTGTGCACTCTTATTGC+TGG + chr2_2:64580228-64580247 Msa0264640:three_prime_UTR 40.0%
TTTCACCAGTACCAGGTTGT+CGG + chr2_2:64578670-64578689 Msa0264640:CDS 45.0%
! GGATGTTCATCCTTTTCGGT+GGG - chr2_2:64578706-64578725 None:intergenic 45.0%
! AGGATGTTCATCCTTTTCGG+TGG - chr2_2:64578707-64578726 None:intergenic 45.0%
TTCGTGCCAAATCCAAGTTC+TGG + chr2_2:64578764-64578783 Msa0264640:CDS 45.0%
TACCGAACAAGTGCTTCTAG+GGG - chr2_2:64579037-64579056 None:intergenic 45.0%
GGCAAACAGTGACAGTTTGA+AGG - chr2_2:64579351-64579370 None:intergenic 45.0%
TTGCGTTATCAGAGTCGTAC+TGG + chr2_2:64579658-64579677 Msa0264640:CDS 45.0%
! TACTACTCTAAACGGTGCTG+TGG + chr2_2:64579711-64579730 Msa0264640:CDS 45.0%
ACGAAATGGCATCTCGTCAT+AGG + chr2_2:64579746-64579765 Msa0264640:CDS 45.0%
CGAAATGGCATCTCGTCATA+GGG + chr2_2:64579747-64579766 Msa0264640:CDS 45.0%
! TTTGCACAGATTAGCTGGGA+TGG - chr2_2:64579809-64579828 None:intergenic 45.0%
TCCCAGCTAATCTGTGCAAA+AGG + chr2_2:64579809-64579828 Msa0264640:CDS 45.0%
!! CCCTTTTGCACAGATTAGCT+GGG - chr2_2:64579813-64579832 None:intergenic 45.0%
CCCAGCTAATCTGTGCAAAA+GGG + chr2_2:64579810-64579829 Msa0264640:CDS 45.0%
! TCCCTTTTGCACAGATTAGC+TGG - chr2_2:64579814-64579833 None:intergenic 45.0%
AGAAGATTAGGCCTCCTACT+AGG + chr2_2:64579884-64579903 Msa0264640:CDS 45.0%
!! GTTTTTAGGCTCCTAGTAGG+AGG - chr2_2:64579898-64579917 None:intergenic 45.0%
!! GTTGGGCTTCTTAGCTTTGT+AGG - chr2_2:64579923-64579942 None:intergenic 45.0%
!! CTGTCTGAGTTTGCTGGTAA+TGG - chr2_2:64580054-64580073 None:intergenic 45.0%
! TTGATGTACCGGTACAAGCT+TGG + chr2_2:64580154-64580173 Msa0264640:three_prime_UTR 45.0%
TTTCACCAGTACCAGGTTGT+CGG + chr2_2:64578670-64578689 Msa0264640:CDS 45.0%
! GGATGTTCATCCTTTTCGGT+GGG - chr2_2:64578706-64578725 None:intergenic 45.0%
! AGGATGTTCATCCTTTTCGG+TGG - chr2_2:64578707-64578726 None:intergenic 45.0%
TTCGTGCCAAATCCAAGTTC+TGG + chr2_2:64578764-64578783 Msa0264640:CDS 45.0%
TACCGAACAAGTGCTTCTAG+GGG - chr2_2:64579037-64579056 None:intergenic 45.0%
GGCAAACAGTGACAGTTTGA+AGG - chr2_2:64579351-64579370 None:intergenic 45.0%
TTGCGTTATCAGAGTCGTAC+TGG + chr2_2:64579658-64579677 Msa0264640:CDS 45.0%
! TACTACTCTAAACGGTGCTG+TGG + chr2_2:64579711-64579730 Msa0264640:CDS 45.0%
ACGAAATGGCATCTCGTCAT+AGG + chr2_2:64579746-64579765 Msa0264640:CDS 45.0%
CGAAATGGCATCTCGTCATA+GGG + chr2_2:64579747-64579766 Msa0264640:CDS 45.0%
! TTTGCACAGATTAGCTGGGA+TGG - chr2_2:64579809-64579828 None:intergenic 45.0%
TCCCAGCTAATCTGTGCAAA+AGG + chr2_2:64579809-64579828 Msa0264640:CDS 45.0%
!! CCCTTTTGCACAGATTAGCT+GGG - chr2_2:64579813-64579832 None:intergenic 45.0%
CCCAGCTAATCTGTGCAAAA+GGG + chr2_2:64579810-64579829 Msa0264640:CDS 45.0%
! TCCCTTTTGCACAGATTAGC+TGG - chr2_2:64579814-64579833 None:intergenic 45.0%
AGAAGATTAGGCCTCCTACT+AGG + chr2_2:64579884-64579903 Msa0264640:CDS 45.0%
!! GTTTTTAGGCTCCTAGTAGG+AGG - chr2_2:64579898-64579917 None:intergenic 45.0%
!! GTTGGGCTTCTTAGCTTTGT+AGG - chr2_2:64579923-64579942 None:intergenic 45.0%
!! CTGTCTGAGTTTGCTGGTAA+TGG - chr2_2:64580054-64580073 None:intergenic 45.0%
! TTGATGTACCGGTACAAGCT+TGG + chr2_2:64580154-64580173 Msa0264640:three_prime_UTR 45.0%
!! TGTTAATTAATAAATAAATA+AGG - chr2_2:64578796-64578815 None:intergenic 5.0%
!! TGTTAATTAATAAATAAATA+AGG - chr2_2:64578796-64578815 None:intergenic 5.0%
TCCACAGTTTCACCAGTACC+AGG + chr2_2:64578663-64578682 Msa0264640:intron 50.0%
!! ACCTGGTACTGGTGAAACTG+TGG - chr2_2:64578667-64578686 None:intergenic 50.0%
!! AAGAGCACTTCCCACCGAAA+AGG + chr2_2:64578693-64578712 Msa0264640:CDS 50.0%
!! GACCCCTAGAAGCACTTGTT+CGG + chr2_2:64579032-64579051 Msa0264640:intron 50.0%
!! TGGTGGCGGTCTTAATGATC+TGG - chr2_2:64579789-64579808 None:intergenic 50.0%
CGAACACTGTCTGAGTTTGC+TGG - chr2_2:64580060-64580079 None:intergenic 50.0%
GCTGATGAACGAAGCTGTGT+TGG + chr2_2:64580298-64580317 Msa0264640:three_prime_UTR 50.0%
TCCACAGTTTCACCAGTACC+AGG + chr2_2:64578663-64578682 Msa0264640:intron 50.0%
!! ACCTGGTACTGGTGAAACTG+TGG - chr2_2:64578667-64578686 None:intergenic 50.0%
!! AAGAGCACTTCCCACCGAAA+AGG + chr2_2:64578693-64578712 Msa0264640:CDS 50.0%
!! GACCCCTAGAAGCACTTGTT+CGG + chr2_2:64579032-64579051 Msa0264640:intron 50.0%
!! TGGTGGCGGTCTTAATGATC+TGG - chr2_2:64579789-64579808 None:intergenic 50.0%
CGAACACTGTCTGAGTTTGC+TGG - chr2_2:64580060-64580079 None:intergenic 50.0%
GCTGATGAACGAAGCTGTGT+TGG + chr2_2:64580298-64580317 Msa0264640:three_prime_UTR 50.0%
CTCTTCCGACAACCTGGTAC+TGG - chr2_2:64578678-64578697 None:intergenic 55.0%
! GAAGTGCTCTTCCGACAACC+TGG - chr2_2:64578684-64578703 None:intergenic 55.0%
!! GAAGCTTTGGGCAACCAACG+AGG + chr2_2:64578741-64578760 Msa0264640:CDS 55.0%
GGATTTGGCACGAACCTCGT+TGG - chr2_2:64578758-64578777 None:intergenic 55.0%
TGGCATCTCGTCATAGGGTC+AGG + chr2_2:64579752-64579771 Msa0264640:CDS 55.0%
! CAGATTAGCTGGGATGGTGG+CGG - chr2_2:64579803-64579822 None:intergenic 55.0%
! GCACAGATTAGCTGGGATGG+TGG - chr2_2:64579806-64579825 None:intergenic 55.0%
CTCTTCCGACAACCTGGTAC+TGG - chr2_2:64578678-64578697 None:intergenic 55.0%
! GAAGTGCTCTTCCGACAACC+TGG - chr2_2:64578684-64578703 None:intergenic 55.0%
!! GAAGCTTTGGGCAACCAACG+AGG + chr2_2:64578741-64578760 Msa0264640:CDS 55.0%
GGATTTGGCACGAACCTCGT+TGG - chr2_2:64578758-64578777 None:intergenic 55.0%
TGGCATCTCGTCATAGGGTC+AGG + chr2_2:64579752-64579771 Msa0264640:CDS 55.0%
! CAGATTAGCTGGGATGGTGG+CGG - chr2_2:64579803-64579822 None:intergenic 55.0%
! GCACAGATTAGCTGGGATGG+TGG - chr2_2:64579806-64579825 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 64578508 64580325 64578508 ID=Msa0264640;Name=Msa0264640
chr2_2 mRNA 64578508 64580325 64578508 ID=Msa0264640-mRNA-1;Parent=Msa0264640;Name=Msa0264640-mRNA-1;_AED=0.05;_eAED=0.05;_QI=56|1|1|1|1|1|4|371|178
chr2_2 exon 64578508 64578578 64578508 ID=Msa0264640-mRNA-1:exon:20147;Parent=Msa0264640-mRNA-1
chr2_2 exon 64578670 64578785 64578670 ID=Msa0264640-mRNA-1:exon:20148;Parent=Msa0264640-mRNA-1
chr2_2 exon 64578873 64578936 64578873 ID=Msa0264640-mRNA-1:exon:20149;Parent=Msa0264640-mRNA-1
chr2_2 exon 64579613 64580325 64579613 ID=Msa0264640-mRNA-1:exon:20150;Parent=Msa0264640-mRNA-1
chr2_2 five_prime_UTR 64578508 64578563 64578508 ID=Msa0264640-mRNA-1:five_prime_utr;Parent=Msa0264640-mRNA-1
chr2_2 CDS 64578564 64578578 64578564 ID=Msa0264640-mRNA-1:cds;Parent=Msa0264640-mRNA-1
chr2_2 CDS 64578670 64578785 64578670 ID=Msa0264640-mRNA-1:cds;Parent=Msa0264640-mRNA-1
chr2_2 CDS 64578873 64578936 64578873 ID=Msa0264640-mRNA-1:cds;Parent=Msa0264640-mRNA-1
chr2_2 CDS 64579613 64579954 64579613 ID=Msa0264640-mRNA-1:cds;Parent=Msa0264640-mRNA-1
chr2_2 three_prime_UTR 64579955 64580325 64579955 ID=Msa0264640-mRNA-1:three_prime_utr;Parent=Msa0264640-mRNA-1
Gene Sequence

>Msa0264640

ATGGTTAACGCTAAGTTTCACCAGTACCAGGTTGTCGGAAGAGCACTTCCCACCGAAAAGGATGAACATCCTAAGATTTATCGCATGAAGCTTTGGGCAACCAACGAGGTTCGTGCCAAATCCAAGTTCTGGTATTTCTTGAGGAAGTTGAAGAAGGTTAAGAAAAGTAATGGACAAGTTTTGGCTATCAATGAGATCTTTGAGAAAAATCCTACCAAGATTAAGAACTATGGAATTTGGTTGCGTTATCAGAGTCGTACTGGTTATCACAATATGTACAAGGAATACCGTGATACTACTCTAAACGGTGCTGTGGAGACAATGTACAACGAAATGGCATCTCGTCATAGGGTCAGGTTTCCTTGCATCCAGATCATTAAGACCGCCACCATCCCAGCTAATCTGTGCAAAAGGGAGAGCACTAAGCAGTTCCACAATTCCAAAATCAAGTTCCCATTGGTGTACAAGAAGATTAGGCCTCCTACTAGGAGCCTAAAAACAACCTACAAAGCTAAGAAGCCCAACCTGTTTATGTGA

Protein sequence

>Msa0264640

MVNAKFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVETMYNEMASRHRVRFPCIQIIKTATIPANLCKRESTKQFHNSKIKFPLVYKKIRPPTRSLKTTYKAKKPNLFM*