Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210330 | XP_013469779.1 | 97.701 | 261 | 6 | 0 | 1 | 261 | 1 | 261 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210330 | sp|Q8GTE3|RS3A_CICAR | 92.720 | 261 | 19 | 0 | 1 | 261 | 1 | 261 | 4.49e-175 | 485 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210330 | B7FLW8 | 97.701 | 261 | 6 | 0 | 1 | 261 | 1 | 261 | 0.0 | 530 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0210330 | 0.812960 | 3.259718e-51 | -8.615850e-47 |
| Msa0002790 | Msa0210330 | 0.814801 | 1.280436e-51 | -8.615850e-47 |
| Msa0032780 | Msa0210330 | 0.841532 | 4.487737e-58 | -8.615850e-47 |
| Msa0040220 | Msa0210330 | 0.811033 | 8.572317e-51 | -8.615850e-47 |
| Msa0044890 | Msa0210330 | 0.843072 | 1.753923e-58 | -8.615850e-47 |
| Msa0068970 | Msa0210330 | 0.848861 | 4.679682e-60 | -8.615850e-47 |
| Msa0087910 | Msa0210330 | 0.876575 | 1.251779e-68 | -8.615850e-47 |
| Msa0114600 | Msa0210330 | 0.816518 | 5.307835e-52 | -8.615850e-47 |
| Msa0128330 | Msa0210330 | 0.802146 | 6.441475e-49 | -8.615850e-47 |
| Msa0134580 | Msa0210330 | 0.804160 | 2.468545e-49 | -8.615850e-47 |
| Msa0167860 | Msa0210330 | 0.805769 | 1.137399e-49 | -8.615850e-47 |
| Msa0174580 | Msa0210330 | 0.806330 | 8.666837e-50 | -8.615850e-47 |
| Msa0183090 | Msa0210330 | 0.841738 | 3.960695e-58 | -8.615850e-47 |
| Msa0191450 | Msa0210330 | 0.803502 | 3.381643e-49 | -8.615850e-47 |
| Msa0191550 | Msa0210330 | 0.803820 | 2.904947e-49 | -8.615850e-47 |
| Msa0192750 | Msa0210330 | 0.821448 | 4.016827e-53 | -8.615850e-47 |
| Msa0194940 | Msa0210330 | 0.830444 | 2.926844e-55 | -8.615850e-47 |
| Msa0210330 | Msa0210360 | 0.880878 | 3.818937e-70 | -8.615850e-47 |
| Msa0210330 | Msa0222730 | 0.847711 | 9.731335e-60 | -8.615850e-47 |
| Msa0210330 | Msa0229150 | 0.817013 | 4.109223e-52 | -8.615850e-47 |
| Msa0210330 | Msa0235050 | 0.823114 | 1.648781e-53 | -8.615850e-47 |
| Msa0210330 | Msa0250820 | 0.872330 | 3.455124e-67 | -8.615850e-47 |
| Msa0210330 | Msa0250870 | 0.824716 | 6.942271e-54 | -8.615850e-47 |
| Msa0210330 | Msa0257450 | 0.838114 | 3.485053e-57 | -8.615850e-47 |
| Msa0210330 | Msa0264010 | 0.824142 | 9.472466e-54 | -8.615850e-47 |
| Msa0210330 | Msa0264640 | 0.803724 | 3.040977e-49 | -8.615850e-47 |
| Msa0210330 | Msa0289580 | 0.819246 | 1.284397e-52 | -8.615850e-47 |
| Msa0210330 | Msa0289610 | 0.812536 | 4.035995e-51 | -8.615850e-47 |
| Msa0210330 | Msa0296720 | 0.822916 | 1.833442e-53 | -8.615850e-47 |
| Msa0210330 | Msa0297830 | 0.840067 | 1.086964e-57 | -8.615850e-47 |
| Msa0210330 | Msa0301220 | 0.821698 | 3.515380e-53 | -8.615850e-47 |
| Msa0210330 | Msa0315430 | 0.830089 | 3.572729e-55 | -8.615850e-47 |
| Msa0210330 | Msa0327300 | 0.814985 | 1.165314e-51 | -8.615850e-47 |
| Msa0210330 | Msa0327330 | 0.823785 | 1.148722e-53 | -8.615850e-47 |
| Msa0210330 | Msa0335840 | 0.855339 | 6.741573e-62 | -8.615850e-47 |
| Msa0210330 | Msa0342850 | 0.855931 | 4.529308e-62 | -8.615850e-47 |
| Msa0210330 | Msa0369410 | 0.823945 | 1.053707e-53 | -8.615850e-47 |
| Msa0210330 | Msa0426250 | 0.818434 | 1.964442e-52 | -8.615850e-47 |
| Msa0210330 | Msa0463520 | 0.819903 | 9.095240e-53 | -8.615850e-47 |
| Msa0210330 | Msa0471880 | 0.807141 | 5.843281e-50 | -8.615850e-47 |
| Msa0210330 | Msa0481520 | 0.849305 | 3.521614e-60 | -8.615850e-47 |
| Msa0210330 | Msa0481850 | 0.836426 | 9.424917e-57 | -8.615850e-47 |
| Msa0210330 | Msa0483110 | 0.812174 | 4.842009e-51 | -8.615850e-47 |
| Msa0210330 | Msa0486070 | 0.829657 | 4.554653e-55 | -8.615850e-47 |
| Msa0210330 | Msa0529900 | 0.823729 | 1.184381e-53 | -8.615850e-47 |
| Msa0210330 | Msa0550420 | 0.860039 | 2.726020e-63 | -8.615850e-47 |
| Msa0210330 | Msa0622230 | 0.822736 | 2.019342e-53 | -8.615850e-47 |
| Msa0210330 | Msa0622750 | 0.808586 | 2.879644e-50 | -8.615850e-47 |
| Msa0210330 | Msa0653060 | 0.828691 | 7.807944e-55 | -8.615850e-47 |
| Msa0210330 | Msa0705800 | 0.853238 | 2.726527e-61 | -8.615850e-47 |
| Msa0210330 | Msa0712610 | 0.834205 | 3.429626e-56 | -8.615850e-47 |
| Msa0210330 | Msa0748350 | 0.811174 | 7.987047e-51 | -8.615850e-47 |
| Msa0210330 | Msa0788380 | 0.818572 | 1.827396e-52 | -8.615850e-47 |
| Msa0210330 | Msa0792420 | 0.853942 | 1.711897e-61 | -8.615850e-47 |
| Msa0210330 | Msa0888810 | 0.804558 | 2.039494e-49 | -8.615850e-47 |
| Msa0210330 | Msa0915540 | 0.867533 | 1.275850e-65 | -8.615850e-47 |
| Msa0210330 | Msa0929700 | 0.811992 | 5.305236e-51 | -8.615850e-47 |
| Msa0210330 | Msa1010310 | 0.804204 | 2.416213e-49 | -8.615850e-47 |
| Msa0210330 | Msa1037290 | 0.809092 | 2.244179e-50 | -8.615850e-47 |
| Msa0210330 | Msa1039520 | 0.806817 | 6.841151e-50 | -8.615850e-47 |
| Msa0210330 | Msa1040160 | 0.864537 | 1.131917e-64 | -8.615850e-47 |
| Msa0210330 | Msa1054280 | 0.804301 | 2.307140e-49 | -8.615850e-47 |
| Msa0210330 | Msa1058700 | 0.812284 | 4.581181e-51 | -8.615850e-47 |
| Msa0210330 | Msa1078870 | 0.841741 | 3.954230e-58 | -8.615850e-47 |
| Msa0210330 | Msa1078980 | 0.815331 | 9.764644e-52 | -8.615850e-47 |
| Msa0210330 | Msa1079910 | 0.811723 | 6.068969e-51 | -8.615850e-47 |
| Msa0210330 | Msa1079920 | 0.836668 | 8.175880e-57 | -8.615850e-47 |
| Msa0210330 | Msa1080350 | 0.846578 | 1.989517e-59 | -8.615850e-47 |
| Msa0210330 | Msa1083370 | 0.864054 | 1.601565e-64 | -8.615850e-47 |
| Msa0210330 | Msa1088490 | 0.823220 | 1.557132e-53 | -8.615850e-47 |
| Msa0210330 | Msa1096900 | 0.808740 | 2.670001e-50 | -8.615850e-47 |
| Msa0210330 | Msa1124850 | 0.888849 | 4.098605e-73 | -8.615850e-47 |
| Msa0210330 | Msa1125860 | 0.839220 | 1.805144e-57 | -8.615850e-47 |
| Msa0210330 | Msa1126060 | 0.835760 | 1.390823e-56 | -8.615850e-47 |
| Msa0210330 | Msa1126520 | 0.804341 | 2.262971e-49 | -8.615850e-47 |
| Msa0210330 | Msa1128120 | 0.843045 | 1.783075e-58 | -8.615850e-47 |
| Msa0210330 | Msa1147670 | 0.807039 | 6.141177e-50 | -8.615850e-47 |
| Msa0210330 | Msa1164150 | 0.818839 | 1.589381e-52 | -8.615850e-47 |
| Msa0210330 | Msa1165640 | 0.826627 | 2.445137e-54 | -8.615850e-47 |
| Msa0210330 | Msa1167540 | 0.874584 | 6.024166e-68 | -8.615850e-47 |
| Msa0210330 | Msa1167550 | 0.861886 | 7.486536e-64 | -8.615850e-47 |
| Msa0210330 | Msa1169180 | 0.811290 | 7.540290e-51 | -8.615850e-47 |
| Msa0210330 | Msa1186030 | 0.822463 | 2.336794e-53 | -8.615850e-47 |
| Msa0210330 | Msa1203560 | 0.817334 | 3.479783e-52 | -8.615850e-47 |
| Msa0210330 | Msa1208330 | 0.813075 | 3.075483e-51 | -8.615850e-47 |
| Msa0210330 | Msa1215820 | 0.818485 | 1.912585e-52 | -8.615850e-47 |
| Msa0210330 | Msa1240270 | 0.819531 | 1.106163e-52 | -8.615850e-47 |
| Msa0210330 | Msa1256840 | 0.861196 | 1.216259e-63 | -8.615850e-47 |
| Msa0210330 | Msa1258540 | 0.813235 | 2.835806e-51 | -8.615850e-47 |
| Msa0210330 | Msa1270640 | 0.804286 | 2.323922e-49 | -8.615850e-47 |
| Msa0210330 | Msa1295150 | 0.818268 | 2.142357e-52 | -8.615850e-47 |
| Msa0210330 | Msa1295170 | 0.824440 | 8.062153e-54 | -8.615850e-47 |
| Msa0210330 | Msa1311400 | 0.864021 | 1.640358e-64 | -8.615850e-47 |
| Msa0210330 | Msa1321790 | 0.827530 | 1.487260e-54 | -8.615850e-47 |
| Msa0210330 | Msa1332250 | 0.836538 | 8.825594e-57 | -8.615850e-47 |
| Msa0210330 | Msa1338190 | 0.821720 | 3.474364e-53 | -8.615850e-47 |
| Msa0210330 | Msa1356790 | 0.848818 | 4.810849e-60 | -8.615850e-47 |
| Msa0210330 | Msa1362210 | 0.814094 | 1.835493e-51 | -8.615850e-47 |
| Msa0210330 | Msa1362790 | 0.803158 | 3.982985e-49 | -8.615850e-47 |
| Msa0210330 | Msa1366180 | 0.826541 | 2.563777e-54 | -8.615850e-47 |
| Msa0210330 | Msa1368920 | 0.809147 | 2.184344e-50 | -8.615850e-47 |
| Msa0210330 | Msa1392590 | 0.826963 | 2.033012e-54 | -8.615850e-47 |
| Msa0210330 | Msa1397100 | 0.805624 | 1.220271e-49 | -8.615850e-47 |
| Msa0210330 | Msa1397660 | 0.811946 | 5.429010e-51 | -8.615850e-47 |
| Msa0210330 | Msa1418770 | 0.811291 | 7.533176e-51 | -8.615850e-47 |
| Msa0210330 | Msa1426120 | 0.849768 | 2.616038e-60 | -8.615850e-47 |
| Msa0210330 | Msa1446410 | 0.826162 | 3.156195e-54 | -8.615850e-47 |
| Msa0210330 | Msa1463570 | 0.801393 | 9.198375e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210330 | MtrunA17_Chr1g0204941 | 97.701 | 261 | 6 | 0 | 1 | 261 | 1 | 261 | 0.0 | 530 |
| Msa0210330 | MtrunA17_Chr3g0081171 | 95.402 | 261 | 12 | 0 | 1 | 261 | 1 | 261 | 2.86e-180 | 495 |
| Msa0210330 | MtrunA17_Chr5g0394611 | 94.636 | 261 | 14 | 0 | 1 | 261 | 1 | 261 | 7.67e-179 | 492 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210330 | AT3G04840.1 | 85.115 | 262 | 38 | 1 | 1 | 261 | 1 | 262 | 1.75e-163 | 453 |
| Msa0210330 | AT4G34670.1 | 85.496 | 262 | 37 | 1 | 1 | 261 | 1 | 262 | 4.54e-163 | 452 |
Find 90 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCAAACTTGGGAGCTTTA+AGG | 0.168578 | 2_1:-50441613 | None:intergenic |
| AATATCATACCAATCCTTCT+TGG | 0.295389 | 2_1:-50439630 | None:intergenic |
| ATTTGGTCCTTGTAGGTTCA+TGG | 0.297913 | 2_1:+50442041 | Msa0210330:intron |
| CATATTAGTTTGTTCAAATT+CGG | 0.307811 | 2_1:+50442422 | Msa0210330:three_prime_UTR |
| GAAGGATTGGTATGATATTA+AGG | 0.312711 | 2_1:+50439634 | Msa0210330:CDS |
| GTTTCTCACCCCAAGTCTTT+TGG | 0.335249 | 2_1:+50442324 | Msa0210330:three_prime_UTR |
| CTGACTAGATTGTGCATAAC+AGG | 0.339955 | 2_1:-50441197 | None:intergenic |
| AAAGCTCCCAAGTTTGATCT+TGG | 0.357514 | 2_1:+50441617 | Msa0210330:CDS |
| TAAGAACAAGCGGATCTCTA+AGG | 0.365175 | 2_1:+50439477 | Msa0210330:CDS |
| GTTTGATCTTGGAAAATTGA+TGG | 0.369245 | 2_1:+50441628 | Msa0210330:CDS |
| AAATCAGATATGCATGCTAT+TGG | 0.369317 | 2_1:+50442259 | Msa0210330:three_prime_UTR |
| GAAATTGTTGGAGCTTGATT+TGG | 0.369823 | 2_1:+50442134 | Msa0210330:exon |
| AAATTCATTCCCGAGATGAT+TGG | 0.381702 | 2_1:+50441521 | Msa0210330:CDS |
| GGGACGAAGACCATGCATTC+AGG | 0.393353 | 2_1:+50440873 | Msa0210330:CDS |
| ATCCTGTGATTTGAAGGAAT+TGG | 0.402781 | 2_1:+50441493 | Msa0210330:CDS |
| GACCCTCGTGTCTCGTACTC+AGG | 0.406163 | 2_1:+50439691 | Msa0210330:CDS |
| TACCAATCCTTCTTGGCAAA+TGG | 0.412105 | 2_1:-50439623 | None:intergenic |
| TAGAGTGTTTGAGGTTTCAT+TGG | 0.413434 | 2_1:+50440838 | Msa0210330:CDS |
| GTTTCATTGGCTGATCTTCA+AGG | 0.434675 | 2_1:+50440851 | Msa0210330:CDS |
| TGCTGATCCATTTGCCAAGA+AGG | 0.436339 | 2_1:+50439616 | Msa0210330:CDS |
| AATTCATTCCCGAGATGATT+GGG | 0.437177 | 2_1:+50441522 | Msa0210330:CDS |
| AGCATCATCCTGTGATTTGA+AGG | 0.439297 | 2_1:+50441487 | Msa0210330:CDS |
| TACCAAGAGGAGAGCTAACC+AGG | 0.440122 | 2_1:+50441165 | Msa0210330:CDS |
| TCCGTCACCATTTCATCAGC+AGG | 0.444686 | 2_1:-50442101 | None:intergenic |
| ACTCAAGCATAGAGTGTTTG+AGG | 0.454600 | 2_1:+50440829 | Msa0210330:CDS |
| ACCATGCATTCAGGAAGATT+AGG | 0.462005 | 2_1:+50440882 | Msa0210330:CDS |
| ATCCATTTGCCAAGAAGGAT+TGG | 0.465718 | 2_1:+50439621 | Msa0210330:CDS |
| ATCTCCTTCCCAATCATCTC+GGG | 0.483111 | 2_1:-50441530 | None:intergenic |
| GAGGAACCTACTGAAATTGT+TGG | 0.484047 | 2_1:+50442122 | Msa0210330:CDS |
| TGTTCAGATCCGTAGGAAGA+TGG | 0.490433 | 2_1:+50441445 | Msa0210330:intron |
| CACCTGGTTAGCTCTCCTCT+TGG | 0.502596 | 2_1:-50441167 | None:intergenic |
| AACTGACAAACTGAGGTCAT+TGG | 0.506332 | 2_1:+50441057 | Msa0210330:CDS |
| TGAGGTCATTGGTGCGTAAG+TGG | 0.507827 | 2_1:+50441068 | Msa0210330:CDS |
| CGGATCTCTAAGGGGAAGAA+AGG | 0.516719 | 2_1:+50439487 | Msa0210330:CDS |
| AAGAACAAGCGGATCTCTAA+GGG | 0.521243 | 2_1:+50439478 | Msa0210330:CDS |
| CTTGTTCTTACCAACGGCCA+TGG | 0.523346 | 2_1:-50439464 | None:intergenic |
| ACCTAATCTTCCTGAATGCA+TGG | 0.523822 | 2_1:-50440883 | None:intergenic |
| TTTCATTGGCTGATCTTCAA+GGG | 0.523908 | 2_1:+50440852 | Msa0210330:CDS |
| GGACGCAAAACCAAAAGACT+TGG | 0.524592 | 2_1:-50442334 | None:intergenic |
| TCATCTCGGGAATGAATTTG+CGG | 0.528925 | 2_1:-50441517 | None:intergenic |
| GGTATCATAAAACCCTAAAA+CGG | 0.529634 | 2_1:+50439392 | None:intergenic |
| AGAGAGGCCTGCTGATGAAA+TGG | 0.532099 | 2_1:+50442094 | Msa0210330:CDS |
| TCTTGCCGACATTCTTCACC+TGG | 0.534041 | 2_1:-50439670 | None:intergenic |
| AATCTCCTTCCCAATCATCT+CGG | 0.535678 | 2_1:-50441531 | None:intergenic |
| TTGAGAGCTGAAGATGTTCA+AGG | 0.537527 | 2_1:+50440905 | Msa0210330:CDS |
| GACGCAAAACCAAAAGACTT+GGG | 0.538880 | 2_1:-50442333 | None:intergenic |
| CGGATGAACACATTCTGCAA+GGG | 0.539130 | 2_1:-50441578 | None:intergenic |
| TCAAATCACAGGATGATGCT+TGG | 0.544201 | 2_1:-50441484 | None:intergenic |
| CATAACAGGTCCTCTTCACC+TGG | 0.545447 | 2_1:-50441183 | None:intergenic |
| GGAGAGCTAACCAGGTGAAG+AGG | 0.557404 | 2_1:+50441173 | Msa0210330:CDS |
| GAATGACAGATTGCTTCAGA+TGG | 0.560187 | 2_1:+50440806 | Msa0210330:intron |
| CTCTGAGGATGTTGGCACAA+AGG | 0.562498 | 2_1:+50442070 | Msa0210330:CDS |
| CTTTATTTGTTCAGATCCGT+AGG | 0.563835 | 2_1:+50441438 | Msa0210330:intron |
| GTTTCACTGTTTGCAGAGTG+CGG | 0.564928 | 2_1:-50439442 | None:intergenic |
| GATCCGCTTGTTCTTACCAA+CGG | 0.569816 | 2_1:-50439470 | None:intergenic |
| GACCAATTCCTTCAAATCAC+AGG | 0.574407 | 2_1:-50441495 | None:intergenic |
| TCGGATGAACACATTCTGCA+AGG | 0.575354 | 2_1:-50441579 | None:intergenic |
| ACAATCTAGTCAGATTAGAC+AGG | 0.580594 | 2_1:+50441207 | Msa0210330:CDS |
| CAAGCTCCAACAATTTCAGT+AGG | 0.582102 | 2_1:-50442128 | None:intergenic |
| GGAGATTACTCTGAGGATGT+TGG | 0.587473 | 2_1:+50442062 | Msa0210330:CDS |
| TTCTTCACCTGGAAAACTGA+AGG | 0.588083 | 2_1:-50439659 | None:intergenic |
| TGATCTCAACCATCTTCCTA+CGG | 0.590794 | 2_1:-50441454 | None:intergenic |
| TTCATTGGCTGATCTTCAAG+GGG | 0.595752 | 2_1:+50440853 | Msa0210330:CDS |
| CAGTAGTCTTGACATCCACA+TGG | 0.596992 | 2_1:-50441108 | None:intergenic |
| AACAGTGAAACCATGGCCGT+TGG | 0.599680 | 2_1:+50439454 | Msa0210330:exon |
| CATTCCCGAGATGATTGGGA+AGG | 0.605231 | 2_1:+50441526 | Msa0210330:CDS |
| TGATCTTGGAAAATTGATGG+AGG | 0.612140 | 2_1:+50441631 | Msa0210330:CDS |
| TGAGAGCTGAAGATGTTCAA+GGG | 0.612312 | 2_1:+50440906 | Msa0210330:CDS |
| ACCCTCGTGTCTCGTACTCA+GGG | 0.615233 | 2_1:+50439692 | Msa0210330:CDS |
| CTCTGCAAACAGTGAAACCA+TGG | 0.618251 | 2_1:+50439447 | Msa0210330:exon |
| ATCTCTAAGGGGAAGAAAGG+TGG | 0.621403 | 2_1:+50439490 | Msa0210330:CDS |
| AACTCTTGTTGAAGCCCATG+TGG | 0.622205 | 2_1:+50441093 | Msa0210330:CDS |
| GTCTCGTACTCAGGGTACCA+AGG | 0.623684 | 2_1:+50439700 | Msa0210330:CDS |
| TGGCCGTTGGTAAGAACAAG+CGG | 0.624911 | 2_1:+50439467 | Msa0210330:CDS |
| CAGAGTTCTCACAGCAACAA+TGG | 0.627817 | 2_1:-50439417 | None:intergenic |
| GCCTGCTGATGAAATGGTGA+CGG | 0.629382 | 2_1:+50442100 | Msa0210330:CDS |
| GGATGAACACATTCTGCAAG+GGG | 0.631103 | 2_1:-50441577 | None:intergenic |
| CAAGGGGTAAATACTAGACG+TGG | 0.633754 | 2_1:-50441561 | None:intergenic |
| GCAAAGAACAAATATGCATG+AGG | 0.634864 | 2_1:-50442384 | None:intergenic |
| CTACTGATAATTACACATTG+AGG | 0.636083 | 2_1:+50441125 | Msa0210330:CDS |
| TTTGCATTGGCTTTACCAAG+AGG | 0.642280 | 2_1:+50441152 | Msa0210330:CDS |
| TACCCTGAGTACGAGACACG+AGG | 0.648373 | 2_1:-50439694 | None:intergenic |
| ATGTTGGCACAAAGGTAGAG+AGG | 0.654238 | 2_1:+50442078 | Msa0210330:CDS |
| ATTTCACAACTGACAAACTG+AGG | 0.681977 | 2_1:+50441050 | Msa0210330:CDS |
| TGCTGATGAAATGGTGACGG+AGG | 0.686062 | 2_1:+50442103 | Msa0210330:CDS |
| ACGCAAAACCAAAAGACTTG+GGG | 0.688719 | 2_1:-50442332 | None:intergenic |
| ACCCTGAGTACGAGACACGA+GGG | 0.700568 | 2_1:-50439693 | None:intergenic |
| AGTAGTCTTGACATCCACAT+GGG | 0.706350 | 2_1:-50441107 | None:intergenic |
| AGAACAAGCGGATCTCTAAG+GGG | 0.721950 | 2_1:+50439479 | Msa0210330:CDS |
| GGTTCATGGAGATTACTCTG+AGG | 0.741731 | 2_1:+50442055 | Msa0210330:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGTATAAAAATTGTTTTA+TGG | - | chr2_1:50440272-50440291 | None:intergenic | 10.0% |
| !!! | TTGATTTTTTTTTTATTTAC+AGG | + | chr2_1:50441021-50441040 | Msa0210330:intron | 10.0% |
| !!! | TGATTTTTTTTTTATTTACA+GGG | + | chr2_1:50441022-50441041 | Msa0210330:intron | 10.0% |
| !! | GATATTATGAAAATAAATAT+TGG | - | chr2_1:50441700-50441719 | None:intergenic | 10.0% |
| !! | GTAAAAAATGAAAATTTGAA+TGG | - | chr2_1:50439553-50439572 | None:intergenic | 15.0% |
| !!! | GTTTTTTGTTTTTTGTAATT+TGG | + | chr2_1:50439742-50439761 | Msa0210330:intron | 15.0% |
| !!! | GATTTTTTTTTTATTTACAG+GGG | + | chr2_1:50441023-50441042 | Msa0210330:intron | 15.0% |
| !!! | ATATATATCTGAATTTTGTT+TGG | + | chr2_1:50442228-50442247 | Msa0210330:three_prime_UTR | 15.0% |
| !!! | TTTGAATGGATTTTGAAAAA+GGG | - | chr2_1:50439539-50439558 | None:intergenic | 20.0% |
| !!! | ATTTGAATGGATTTTGAAAA+AGG | - | chr2_1:50439540-50439559 | None:intergenic | 20.0% |
| !! | ATATTCAATGAAAGTAAGAT+AGG | - | chr2_1:50439811-50439830 | None:intergenic | 20.0% |
| !! | AAAAAAATGTTGTCAAATAG+CGG | - | chr2_1:50440234-50440253 | None:intergenic | 20.0% |
| !!! | TCTTGTCTTTTAAATAATGT+TGG | - | chr2_1:50440474-50440493 | None:intergenic | 20.0% |
| !! | CTTAATGCTTATTTAGAAAA+TGG | + | chr2_1:50440776-50440795 | Msa0210330:intron | 20.0% |
| !!! | AAAATCTTTTGACAAATTTC+TGG | + | chr2_1:50440930-50440949 | Msa0210330:CDS | 20.0% |
| !!! | AAATCTTTTGACAAATTTCT+GGG | + | chr2_1:50440931-50440950 | Msa0210330:CDS | 20.0% |
| !! | ATATATAAAGAAGAAATCAC+TGG | + | chr2_1:50441350-50441369 | Msa0210330:intron | 20.0% |
| !!! | CATATTAGTTTGTTCAAATT+CGG | + | chr2_1:50442422-50442441 | Msa0210330:three_prime_UTR | 20.0% |
| !!! | ATTCTTATTTTGCAATTTGA+CGG | - | chr2_1:50442468-50442487 | None:intergenic | 20.0% |
| !! | TTTCCTTGCATTTTCTATAA+TGG | + | chr2_1:50439576-50439595 | Msa0210330:intron | 25.0% |
| ! | AAACCATTATAGAAAATGCA+AGG | - | chr2_1:50439582-50439601 | None:intergenic | 25.0% |
| ! | AAAAACAAAAAACATGACAG+AGG | - | chr2_1:50439735-50439754 | None:intergenic | 25.0% |
| ! | ACTTTCATTGAATATCTATC+TGG | + | chr2_1:50439816-50439835 | Msa0210330:intron | 25.0% |
| ! | TTAAGCTATCTAAACAATCA+GGG | - | chr2_1:50439847-50439866 | None:intergenic | 25.0% |
| ! | ATTAAGCTATCTAAACAATC+AGG | - | chr2_1:50439848-50439867 | None:intergenic | 25.0% |
| !! | AAGCTAAAAGTTTTTCCTAT+AGG | + | chr2_1:50439950-50439969 | Msa0210330:intron | 25.0% |
| ! | TTATTTCCATAATAGCCTAT+AGG | - | chr2_1:50439968-50439987 | None:intergenic | 25.0% |
| ! | GTTACTTATGTTCGTATATA+CGG | + | chr2_1:50440049-50440068 | Msa0210330:intron | 25.0% |
| ! | AAAAAATGTTGTCAAATAGC+GGG | - | chr2_1:50440233-50440252 | None:intergenic | 25.0% |
| !! | TTATACTAAAAAGCATATCG+TGG | + | chr2_1:50440283-50440302 | Msa0210330:intron | 25.0% |
| !!! | TGATTGTTGTTTTATAAGTG+TGG | - | chr2_1:50440402-50440421 | None:intergenic | 25.0% |
| ! | GAGAATAAAAATGAAGACAT+GGG | - | chr2_1:50440577-50440596 | None:intergenic | 25.0% |
| !! | AAATATGTCTTAGTCTTTCA+TGG | + | chr2_1:50440718-50440737 | Msa0210330:intron | 25.0% |
| !! | AATATGTCTTAGTCTTTCAT+GGG | + | chr2_1:50440719-50440738 | Msa0210330:intron | 25.0% |
| ! | ATTATGACAAATAGATGGTT+CGG | - | chr2_1:50440969-50440988 | None:intergenic | 25.0% |
| ! | ACAACATTATGACAAATAGA+TGG | - | chr2_1:50440974-50440993 | None:intergenic | 25.0% |
| !! | TTTGTCATAATGTTGTTTGT+TGG | + | chr2_1:50440978-50440997 | Msa0210330:intron | 25.0% |
| ! | ATATATTAGTGTATCCAACA+CGG | + | chr2_1:50441279-50441298 | Msa0210330:intron | 25.0% |
| ! | AACAGCATTTCATAAAAGAA+AGG | - | chr2_1:50441330-50441349 | None:intergenic | 25.0% |
| !! | AATTTTCCAAGATCAAACTT+GGG | - | chr2_1:50441626-50441645 | None:intergenic | 25.0% |
| ! | TATCACCTGAATAAAAACTT+TGG | + | chr2_1:50441716-50441735 | Msa0210330:intron | 25.0% |
| !! | AACAACCAAAGTTTTTATTC+AGG | - | chr2_1:50441724-50441743 | None:intergenic | 25.0% |
| !! | AAAAACTTTGGTTGTTACTT+TGG | + | chr2_1:50441728-50441747 | Msa0210330:intron | 25.0% |
| !! | TTTGGAAAGTTTGAAGTAAT+TGG | - | chr2_1:50441797-50441816 | None:intergenic | 25.0% |
| ! | AATAATCTGAAGGTTGTTTA+TGG | - | chr2_1:50441839-50441858 | None:intergenic | 25.0% |
| ! | TTGAACTTGTAATAATCTGA+AGG | - | chr2_1:50441849-50441868 | None:intergenic | 25.0% |
| ! | ACTTATAACCATCTAAAAAG+TGG | + | chr2_1:50441997-50442016 | Msa0210330:intron | 25.0% |
| !!! | GGTTTGATTTTGTTTCTATT+TGG | + | chr2_1:50442024-50442043 | Msa0210330:intron | 25.0% |
| !!! | GTATATTTTTCAGCAATGAA+TGG | - | chr2_1:50442358-50442377 | None:intergenic | 25.0% |
| !! | AATGGATTTTGAAAAAGGGT+TGG | - | chr2_1:50439535-50439554 | None:intergenic | 30.0% |
| AATATCATACCAATCCTTCT+TGG | - | chr2_1:50439633-50439652 | None:intergenic | 30.0% | |
| ! | GAAGGATTGGTATGATATTA+AGG | + | chr2_1:50439634-50439653 | Msa0210330:CDS | 30.0% |
| !! | GGTTTGATTTGTACATTGTT+AGG | + | chr2_1:50439763-50439782 | Msa0210330:intron | 30.0% |
| ! | GTTTTTCCTATAGGCTATTA+TGG | + | chr2_1:50439959-50439978 | Msa0210330:intron | 30.0% |
| TAAGCTGAAAAAACATCTCA+TGG | + | chr2_1:50439985-50440004 | Msa0210330:intron | 30.0% | |
| GAACATAAGTAACTAAGTGA+CGG | - | chr2_1:50440042-50440061 | None:intergenic | 30.0% | |
| CGAGAATAAAAATGAAGACA+TGG | - | chr2_1:50440578-50440597 | None:intergenic | 30.0% | |
| ! | ATATGTCTTAGTCTTTCATG+GGG | + | chr2_1:50440720-50440739 | Msa0210330:intron | 30.0% |
| GTTGCTGAAATTTGATCAAT+TGG | + | chr2_1:50440742-50440761 | Msa0210330:intron | 30.0% | |
| CTACTGATAATTACACATTG+AGG | + | chr2_1:50441125-50441144 | Msa0210330:CDS | 30.0% | |
| !! | CTTTAAGGATCTTCACTTTT+CGG | - | chr2_1:50441601-50441620 | None:intergenic | 30.0% |
| ! | CAATTTTCCAAGATCAAACT+TGG | - | chr2_1:50441627-50441646 | None:intergenic | 30.0% |
| GTTTGATCTTGGAAAATTGA+TGG | + | chr2_1:50441628-50441647 | Msa0210330:CDS | 30.0% | |
| ! | GTTTTCACACAAGCATTTAT+TGG | - | chr2_1:50441890-50441909 | None:intergenic | 30.0% |
| AAATCAGATATGCATGCTAT+TGG | + | chr2_1:50442259-50442278 | Msa0210330:three_prime_UTR | 30.0% | |
| TCAAATATGCCAATCCAAAC+AGG | + | chr2_1:50440072-50440091 | Msa0210330:intron | 35.0% | |
| GTAGATCACATATCGCTATA+GGG | - | chr2_1:50440338-50440357 | None:intergenic | 35.0% | |
| AGATAGATATTTCGAGCAGA+GGG | - | chr2_1:50440360-50440379 | None:intergenic | 35.0% | |
| TAGATAGATATTTCGAGCAG+AGG | - | chr2_1:50440361-50440380 | None:intergenic | 35.0% | |
| TCGAAATATCTATCTAGCAC+TGG | + | chr2_1:50440365-50440384 | Msa0210330:intron | 35.0% | |
| CGAAATATCTATCTAGCACT+GGG | + | chr2_1:50440366-50440385 | Msa0210330:intron | 35.0% | |
| !! | AATAATGTTGGTCTTGCTTG+TGG | - | chr2_1:50440462-50440481 | None:intergenic | 35.0% |
| GACAAGAAAAAAGACTGAAC+TGG | + | chr2_1:50440487-50440506 | Msa0210330:intron | 35.0% | |
| TGAACTGGCATTATCATGAT+GGG | + | chr2_1:50440502-50440521 | Msa0210330:intron | 35.0% | |
| !!! | TTTTCTAAAGTATCGACTCC+AGG | + | chr2_1:50440539-50440558 | Msa0210330:intron | 35.0% |
| !! | TTTCTAAAGTATCGACTCCA+GGG | + | chr2_1:50440540-50440559 | Msa0210330:intron | 35.0% |
| ATTCTCATGTAAGTGGAAAG+AGG | - | chr2_1:50440617-50440636 | None:intergenic | 35.0% | |
| TCTTTCCACTTACATGAGAA+TGG | + | chr2_1:50440616-50440635 | Msa0210330:intron | 35.0% | |
| AACTTCCATTCTCATGTAAG+TGG | - | chr2_1:50440624-50440643 | None:intergenic | 35.0% | |
| !!! | GCTATTTAACCCATTGGTTT+TGG | + | chr2_1:50440681-50440700 | Msa0210330:intron | 35.0% |
| TCCTTGTAACCAAAACCAAT+GGG | - | chr2_1:50440693-50440712 | None:intergenic | 35.0% | |
| TTCCTTGTAACCAAAACCAA+TGG | - | chr2_1:50440694-50440713 | None:intergenic | 35.0% | |
| ! | TAGAGTGTTTGAGGTTTCAT+TGG | + | chr2_1:50440838-50440857 | Msa0210330:CDS | 35.0% |
| ! | TTTCATTGGCTGATCTTCAA+GGG | + | chr2_1:50440852-50440871 | Msa0210330:CDS | 35.0% |
| ATTTCACAACTGACAAACTG+AGG | + | chr2_1:50441050-50441069 | Msa0210330:CDS | 35.0% | |
| ! | ACATTGAGGATGTTTTGCAT+TGG | + | chr2_1:50441139-50441158 | Msa0210330:CDS | 35.0% |
| ACAATCTAGTCAGATTAGAC+AGG | + | chr2_1:50441207-50441226 | Msa0210330:CDS | 35.0% | |
| !! | ATCCAACACATGTTTTAGGT+AGG | + | chr2_1:50441303-50441322 | Msa0210330:intron | 35.0% |
| !!! | AAATCACTGGTTTTGAACCT+AGG | + | chr2_1:50441363-50441382 | Msa0210330:intron | 35.0% |
| CTACGGATCTGAACAAATAA+AGG | - | chr2_1:50441440-50441459 | None:intergenic | 35.0% | |
| ! | CTTTATTTGTTCAGATCCGT+AGG | + | chr2_1:50441438-50441457 | Msa0210330:intron | 35.0% |
| ATCCTGTGATTTGAAGGAAT+TGG | + | chr2_1:50441493-50441512 | Msa0210330:CDS | 35.0% | |
| AAATTCATTCCCGAGATGAT+TGG | + | chr2_1:50441521-50441540 | Msa0210330:CDS | 35.0% | |
| AATTCATTCCCGAGATGATT+GGG | + | chr2_1:50441522-50441541 | Msa0210330:CDS | 35.0% | |
| TGATCTTGGAAAATTGATGG+AGG | + | chr2_1:50441631-50441650 | Msa0210330:CDS | 35.0% | |
| TCATGCTAAAAGAGAACAGA+AGG | - | chr2_1:50441954-50441973 | None:intergenic | 35.0% | |
| AACCATCTAAAAAGTGGCTT+TGG | + | chr2_1:50442003-50442022 | Msa0210330:intron | 35.0% | |
| !!! | AACCAAAGCCACTTTTTAGA+TGG | - | chr2_1:50442008-50442027 | None:intergenic | 35.0% |
| ! | TGTTTCTATTTGGTCCTTGT+AGG | + | chr2_1:50442034-50442053 | Msa0210330:intron | 35.0% |
| GAAATTGTTGGAGCTTGATT+TGG | + | chr2_1:50442134-50442153 | Msa0210330:exon | 35.0% | |
| GCAAAGAACAAATATGCATG+AGG | - | chr2_1:50442387-50442406 | None:intergenic | 35.0% | |
| TAAGAACAAGCGGATCTCTA+AGG | + | chr2_1:50439477-50439496 | Msa0210330:CDS | 40.0% | |
| AAGAACAAGCGGATCTCTAA+GGG | + | chr2_1:50439478-50439497 | Msa0210330:CDS | 40.0% | |
| ATCCATTTGCCAAGAAGGAT+TGG | + | chr2_1:50439621-50439640 | Msa0210330:CDS | 40.0% | |
| TACCAATCCTTCTTGGCAAA+TGG | - | chr2_1:50439626-50439645 | None:intergenic | 40.0% | |
| TTCTTCACCTGGAAAACTGA+AGG | - | chr2_1:50439662-50439681 | None:intergenic | 40.0% | |
| ! | GTTTTCCAGGTGAAGAATGT+CGG | + | chr2_1:50439665-50439684 | Msa0210330:CDS | 40.0% |
| GACAGAGGAAAACAATACCT+TGG | - | chr2_1:50439720-50439739 | None:intergenic | 40.0% | |
| GCTATCTAAACAATCAGGGA+GGG | - | chr2_1:50439843-50439862 | None:intergenic | 40.0% | |
| AGCTATCTAAACAATCAGGG+AGG | - | chr2_1:50439844-50439863 | None:intergenic | 40.0% | |
| CACTAAGTATACTCAGTCCA+AGG | - | chr2_1:50440102-50440121 | None:intergenic | 40.0% | |
| TCTTGTAGTGCAGAAAACAG+CGG | + | chr2_1:50440163-50440182 | Msa0210330:intron | 40.0% | |
| TCTGCTACACAATAGTGCTA+TGG | + | chr2_1:50440197-50440216 | Msa0210330:intron | 40.0% | |
| !! | TTGTCAAATAGCGGGTAAAG+TGG | - | chr2_1:50440225-50440244 | None:intergenic | 40.0% |
| GGTAGATCACATATCGCTAT+AGG | - | chr2_1:50440339-50440358 | None:intergenic | 40.0% | |
| CTGAACTGGCATTATCATGA+TGG | + | chr2_1:50440501-50440520 | Msa0210330:intron | 40.0% | |
| !! | TTCTAAAGTATCGACTCCAG+GGG | + | chr2_1:50440541-50440560 | Msa0210330:intron | 40.0% |
| !! | CAATGGGTTAAATAGCAGCT+AGG | - | chr2_1:50440677-50440696 | None:intergenic | 40.0% |
| ! | CTAGCTGCTATTTAACCCAT+TGG | + | chr2_1:50440675-50440694 | Msa0210330:intron | 40.0% |
| !!! | ACCCATTGGTTTTGGTTACA+AGG | + | chr2_1:50440689-50440708 | Msa0210330:intron | 40.0% |
| GAATGACAGATTGCTTCAGA+TGG | + | chr2_1:50440806-50440825 | Msa0210330:intron | 40.0% | |
| ! | ACTCAAGCATAGAGTGTTTG+AGG | + | chr2_1:50440829-50440848 | Msa0210330:CDS | 40.0% |
| ! | GTTTCATTGGCTGATCTTCA+AGG | + | chr2_1:50440851-50440870 | Msa0210330:CDS | 40.0% |
| ! | TTCATTGGCTGATCTTCAAG+GGG | + | chr2_1:50440853-50440872 | Msa0210330:CDS | 40.0% |
| ACCATGCATTCAGGAAGATT+AGG | + | chr2_1:50440882-50440901 | Msa0210330:CDS | 40.0% | |
| ACCTAATCTTCCTGAATGCA+TGG | - | chr2_1:50440886-50440905 | None:intergenic | 40.0% | |
| TTGAGAGCTGAAGATGTTCA+AGG | + | chr2_1:50440905-50440924 | Msa0210330:CDS | 40.0% | |
| TGAGAGCTGAAGATGTTCAA+GGG | + | chr2_1:50440906-50440925 | Msa0210330:CDS | 40.0% | |
| AACTGACAAACTGAGGTCAT+TGG | + | chr2_1:50441057-50441076 | Msa0210330:CDS | 40.0% | |
| ! | AGTAGTCTTGACATCCACAT+GGG | - | chr2_1:50441110-50441129 | None:intergenic | 40.0% |
| !! | TTTGCATTGGCTTTACCAAG+AGG | + | chr2_1:50441152-50441171 | Msa0210330:CDS | 40.0% |
| CTGACTAGATTGTGCATAAC+AGG | - | chr2_1:50441200-50441219 | None:intergenic | 40.0% | |
| ! | CGGTATCCAACACATGTTTT+AGG | + | chr2_1:50441299-50441318 | Msa0210330:intron | 40.0% |
| GTCCTACCTAAAACATGTGT+TGG | - | chr2_1:50441308-50441327 | None:intergenic | 40.0% | |
| AGAAGACAAAGCATGATCCT+AGG | - | chr2_1:50441383-50441402 | None:intergenic | 40.0% | |
| TGATCTCAACCATCTTCCTA+CGG | - | chr2_1:50441457-50441476 | None:intergenic | 40.0% | |
| TCAAATCACAGGATGATGCT+TGG | - | chr2_1:50441487-50441506 | None:intergenic | 40.0% | |
| AGCATCATCCTGTGATTTGA+AGG | + | chr2_1:50441487-50441506 | Msa0210330:CDS | 40.0% | |
| GACCAATTCCTTCAAATCAC+AGG | - | chr2_1:50441498-50441517 | None:intergenic | 40.0% | |
| TCATCTCGGGAATGAATTTG+CGG | - | chr2_1:50441520-50441539 | None:intergenic | 40.0% | |
| AATCTCCTTCCCAATCATCT+CGG | - | chr2_1:50441534-50441553 | None:intergenic | 40.0% | |
| GATCAAACTTGGGAGCTTTA+AGG | - | chr2_1:50441616-50441635 | None:intergenic | 40.0% | |
| AAAGCTCCCAAGTTTGATCT+TGG | + | chr2_1:50441617-50441636 | Msa0210330:CDS | 40.0% | |
| !! | TTGGTTGTTACTTTGGTCAC+TGG | + | chr2_1:50441735-50441754 | Msa0210330:intron | 40.0% |
| CTTTCCAAAAGCTCTCTGTT+CGG | + | chr2_1:50441808-50441827 | Msa0210330:intron | 40.0% | |
| ATTTGGTCCTTGTAGGTTCA+TGG | + | chr2_1:50442041-50442060 | Msa0210330:intron | 40.0% | |
| GTAATCTCCATGAACCTACA+AGG | - | chr2_1:50442051-50442070 | None:intergenic | 40.0% | |
| GAGGAACCTACTGAAATTGT+TGG | + | chr2_1:50442122-50442141 | Msa0210330:CDS | 40.0% | |
| CAAGCTCCAACAATTTCAGT+AGG | - | chr2_1:50442131-50442150 | None:intergenic | 40.0% | |
| ACGCAAAACCAAAAGACTTG+GGG | - | chr2_1:50442335-50442354 | None:intergenic | 40.0% | |
| GACGCAAAACCAAAAGACTT+GGG | - | chr2_1:50442336-50442355 | None:intergenic | 40.0% | |
| ! | GCAACAATGGCACCGTTTTA+GGG | - | chr2_1:50439407-50439426 | None:intergenic | 45.0% |
| ! | AGCAACAATGGCACCGTTTT+AGG | - | chr2_1:50439408-50439427 | None:intergenic | 45.0% |
| CAGAGTTCTCACAGCAACAA+TGG | - | chr2_1:50439420-50439439 | None:intergenic | 45.0% | |
| GTTTCACTGTTTGCAGAGTG+CGG | - | chr2_1:50439445-50439464 | None:intergenic | 45.0% | |
| CTCTGCAAACAGTGAAACCA+TGG | + | chr2_1:50439447-50439466 | Msa0210330:exon | 45.0% | |
| GATCCGCTTGTTCTTACCAA+CGG | - | chr2_1:50439473-50439492 | None:intergenic | 45.0% | |
| AGAACAAGCGGATCTCTAAG+GGG | + | chr2_1:50439479-50439498 | Msa0210330:CDS | 45.0% | |
| ! | ATCTCTAAGGGGAAGAAAGG+TGG | + | chr2_1:50439490-50439509 | Msa0210330:CDS | 45.0% |
| TGCTGATCCATTTGCCAAGA+AGG | + | chr2_1:50439616-50439635 | Msa0210330:CDS | 45.0% | |
| ! | TAAGGCTCCTTCAGTTTTCC+AGG | + | chr2_1:50439652-50439671 | Msa0210330:CDS | 45.0% |
| CAAGGACTACCTGTTTGGAT+TGG | - | chr2_1:50440084-50440103 | None:intergenic | 45.0% | |
| CAATCCAAACAGGTAGTCCT+TGG | + | chr2_1:50440082-50440101 | Msa0210330:intron | 45.0% | |
| CTTGTAGTGCAGAAAACAGC+GGG | + | chr2_1:50440164-50440183 | Msa0210330:intron | 45.0% | |
| AACTCTTGTTGAAGCCCATG+TGG | + | chr2_1:50441093-50441112 | Msa0210330:CDS | 45.0% | |
| ! | CAGTAGTCTTGACATCCACA+TGG | - | chr2_1:50441111-50441130 | None:intergenic | 45.0% |
| ACATGTGTTGGATACCGTGT+TGG | - | chr2_1:50441296-50441315 | None:intergenic | 45.0% | |
| TGTTCAGATCCGTAGGAAGA+TGG | + | chr2_1:50441445-50441464 | Msa0210330:intron | 45.0% | |
| ATCTCCTTCCCAATCATCTC+GGG | - | chr2_1:50441533-50441552 | None:intergenic | 45.0% | |
| CAAGGGGTAAATACTAGACG+TGG | - | chr2_1:50441564-50441583 | None:intergenic | 45.0% | |
| GGATGAACACATTCTGCAAG+GGG | - | chr2_1:50441580-50441599 | None:intergenic | 45.0% | |
| CGGATGAACACATTCTGCAA+GGG | - | chr2_1:50441581-50441600 | None:intergenic | 45.0% | |
| TCGGATGAACACATTCTGCA+AGG | - | chr2_1:50441582-50441601 | None:intergenic | 45.0% | |
| ! | GAAACCGAACAGAGAGCTTT+TGG | - | chr2_1:50441815-50441834 | None:intergenic | 45.0% |
| GGTTCATGGAGATTACTCTG+AGG | + | chr2_1:50442055-50442074 | Msa0210330:intron | 45.0% | |
| ! | GGAGATTACTCTGAGGATGT+TGG | + | chr2_1:50442062-50442081 | Msa0210330:CDS | 45.0% |
| ATGTTGGCACAAAGGTAGAG+AGG | + | chr2_1:50442078-50442097 | Msa0210330:CDS | 45.0% | |
| ! | GTTTCTCACCCCAAGTCTTT+TGG | + | chr2_1:50442324-50442343 | Msa0210330:three_prime_UTR | 45.0% |
| GGACGCAAAACCAAAAGACT+TGG | - | chr2_1:50442337-50442356 | None:intergenic | 45.0% | |
| !! | ATATTATGAAAATAAATATT+GGG | - | chr2_1:50441699-50441718 | None:intergenic | 5.0% |
| !!! | AACAAAATTAAAATTTTAAA+AGG | - | chr2_1:50441929-50441948 | None:intergenic | 5.0% |
| AACAGTGAAACCATGGCCGT+TGG | + | chr2_1:50439454-50439473 | Msa0210330:exon | 50.0% | |
| CTTGTTCTTACCAACGGCCA+TGG | - | chr2_1:50439467-50439486 | None:intergenic | 50.0% | |
| ! | TGGCCGTTGGTAAGAACAAG+CGG | + | chr2_1:50439467-50439486 | Msa0210330:CDS | 50.0% |
| ! | CGGATCTCTAAGGGGAAGAA+AGG | + | chr2_1:50439487-50439506 | Msa0210330:CDS | 50.0% |
| TCTTGCCGACATTCTTCACC+TGG | - | chr2_1:50439673-50439692 | None:intergenic | 50.0% | |
| CAGTCCAAGGACTACCTGTT+TGG | - | chr2_1:50440089-50440108 | None:intergenic | 50.0% | |
| !! | TGTTGGTCTTGCTTGTGGCA+GGG | - | chr2_1:50440457-50440476 | None:intergenic | 50.0% |
| !! | ATGTTGGTCTTGCTTGTGGC+AGG | - | chr2_1:50440458-50440477 | None:intergenic | 50.0% |
| TGAGGTCATTGGTGCGTAAG+TGG | + | chr2_1:50441068-50441087 | Msa0210330:CDS | 50.0% | |
| TACCAAGAGGAGAGCTAACC+AGG | + | chr2_1:50441165-50441184 | Msa0210330:CDS | 50.0% | |
| CATAACAGGTCCTCTTCACC+TGG | - | chr2_1:50441186-50441205 | None:intergenic | 50.0% | |
| CATTCCCGAGATGATTGGGA+AGG | + | chr2_1:50441526-50441545 | Msa0210330:CDS | 50.0% | |
| ! | CTCTGAGGATGTTGGCACAA+AGG | + | chr2_1:50442070-50442089 | Msa0210330:CDS | 50.0% |
| AGAGAGGCCTGCTGATGAAA+TGG | + | chr2_1:50442094-50442113 | Msa0210330:CDS | 50.0% | |
| GCCTGCTGATGAAATGGTGA+CGG | + | chr2_1:50442100-50442119 | Msa0210330:CDS | 50.0% | |
| TCCGTCACCATTTCATCAGC+AGG | - | chr2_1:50442104-50442123 | None:intergenic | 50.0% | |
| !! | TGCTGATGAAATGGTGACGG+AGG | + | chr2_1:50442103-50442122 | Msa0210330:CDS | 50.0% |
| ACCCTCGTGTCTCGTACTCA+GGG | + | chr2_1:50439692-50439711 | Msa0210330:CDS | 55.0% | |
| ACCCTGAGTACGAGACACGA+GGG | - | chr2_1:50439696-50439715 | None:intergenic | 55.0% | |
| TACCCTGAGTACGAGACACG+AGG | - | chr2_1:50439697-50439716 | None:intergenic | 55.0% | |
| ! | GTCTCGTACTCAGGGTACCA+AGG | + | chr2_1:50439700-50439719 | Msa0210330:CDS | 55.0% |
| CATGGGAATGTCATGTCCCC+TGG | - | chr2_1:50440560-50440579 | None:intergenic | 55.0% | |
| GGGACGAAGACCATGCATTC+AGG | + | chr2_1:50440873-50440892 | Msa0210330:CDS | 55.0% | |
| ! | CACCTGGTTAGCTCTCCTCT+TGG | - | chr2_1:50441170-50441189 | None:intergenic | 55.0% |
| GGAGAGCTAACCAGGTGAAG+AGG | + | chr2_1:50441173-50441192 | Msa0210330:CDS | 55.0% | |
| GACCCTCGTGTCTCGTACTC+AGG | + | chr2_1:50439691-50439710 | Msa0210330:CDS | 60.0% | |
| CTTGTGGCAGGGCAGAAGTG+GGG | - | chr2_1:50440446-50440465 | None:intergenic | 60.0% | |
| GCTTGTGGCAGGGCAGAAGT+GGG | - | chr2_1:50440447-50440466 | None:intergenic | 60.0% | |
| TGCTTGTGGCAGGGCAGAAG+TGG | - | chr2_1:50440448-50440467 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 50439399 | 50442501 | 50439399 | ID=Msa0210330;Name=Msa0210330 |
| chr2_1 | mRNA | 50439399 | 50442501 | 50439399 | ID=Msa0210330-mRNA-1;Parent=Msa0210330;Name=Msa0210330-mRNA-1;_AED=0.07;_eAED=0.07;_QI=67|1|1|1|1|1|6|350|261 |
| chr2_1 | exon | 50439399 | 50439524 | 50439399 | ID=Msa0210330-mRNA-1:exon:13906;Parent=Msa0210330-mRNA-1 |
| chr2_1 | exon | 50439616 | 50439721 | 50439616 | ID=Msa0210330-mRNA-1:exon:13907;Parent=Msa0210330-mRNA-1 |
| chr2_1 | exon | 50440815 | 50440952 | 50440815 | ID=Msa0210330-mRNA-1:exon:13908;Parent=Msa0210330-mRNA-1 |
| chr2_1 | exon | 50441043 | 50441228 | 50441043 | ID=Msa0210330-mRNA-1:exon:13909;Parent=Msa0210330-mRNA-1 |
| chr2_1 | exon | 50441452 | 50441652 | 50441452 | ID=Msa0210330-mRNA-1:exon:13910;Parent=Msa0210330-mRNA-1 |
| chr2_1 | exon | 50442056 | 50442501 | 50442056 | ID=Msa0210330-mRNA-1:exon:13911;Parent=Msa0210330-mRNA-1 |
| chr2_1 | five_prime_UTR | 50439399 | 50439465 | 50439399 | ID=Msa0210330-mRNA-1:five_prime_utr;Parent=Msa0210330-mRNA-1 |
| chr2_1 | CDS | 50439466 | 50439524 | 50439466 | ID=Msa0210330-mRNA-1:cds;Parent=Msa0210330-mRNA-1 |
| chr2_1 | CDS | 50439616 | 50439721 | 50439616 | ID=Msa0210330-mRNA-1:cds;Parent=Msa0210330-mRNA-1 |
| chr2_1 | CDS | 50440815 | 50440952 | 50440815 | ID=Msa0210330-mRNA-1:cds;Parent=Msa0210330-mRNA-1 |
| chr2_1 | CDS | 50441043 | 50441228 | 50441043 | ID=Msa0210330-mRNA-1:cds;Parent=Msa0210330-mRNA-1 |
| chr2_1 | CDS | 50441452 | 50441652 | 50441452 | ID=Msa0210330-mRNA-1:cds;Parent=Msa0210330-mRNA-1 |
| chr2_1 | CDS | 50442056 | 50442151 | 50442056 | ID=Msa0210330-mRNA-1:cds;Parent=Msa0210330-mRNA-1 |
| chr2_1 | three_prime_UTR | 50442152 | 50442501 | 50442152 | ID=Msa0210330-mRNA-1:three_prime_utr;Parent=Msa0210330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
