AlfalfaGEDB | Msa0068410

M. sativa cultivar zhongmu-4 / Msa0068410

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009894 GO:0009987 GO:0010468 GO:0010608 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031329 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043565 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1903311
PFAM: PF03462.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0068410	XP_024634070.1	97.143	420	12	0	1	420	1	420	0.0	848

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0068410	sp\|F4J264\|PRFB3_ARATH	54.523	398	169	6	25	419	12	400	8.69e-146	423

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0068410	A0A396JS10	97.143	420	12	0	1	420	1	420	0.0	848

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0068410	-0.809726	1.640880e-50	-8.615850e-47
Msa0000780	Msa0068410	0.824888	6.321932e-54	-8.615850e-47
Msa0001460	Msa0068410	0.816196	6.264100e-52	-8.615850e-47
Msa0003470	Msa0068410	0.866465	2.796158e-65	-8.615850e-47
Msa0004350	Msa0068410	0.851941	6.391418e-61	-8.615850e-47
Msa0004610	Msa0068410	0.819198	1.317504e-52	-8.615850e-47
Msa0005160	Msa0068410	0.803074	4.146078e-49	-8.615850e-47
Msa0005690	Msa0068410	0.812073	5.092900e-51	-8.615850e-47
Msa0006050	Msa0068410	0.811718	6.084387e-51	-8.615850e-47
Msa0006700	Msa0068410	0.875562	2.794258e-68	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0068410	MtrunA17_Chr1g0172361	97.143	420	12	0	1	420	1	420	0.0	848
Msa0068410	MtrunA17_Chr7g0249581	40.608	362	204	6	62	416	100	457	3.95e-76	244
Msa0068410	MtrunA17_Chr7g0271771	32.923	325	204	8	102	417	146	465	3.07e-41	152
Msa0068410	MtrunA17_Chr7g0268791	26.357	387	238	13	46	408	25	388	1.63e-15	77.8
Msa0068410	MtrunA17_Chr7g0270701	29.911	224	150	4	188	406	162	383	5.24e-15	76.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0068410	AT3G57190.1	54.523	398	169	6	25	419	12	400	8.83e-147	423
Msa0068410	AT5G36170.1	39.257	377	222	5	47	416	66	442	1.42e-79	253
Msa0068410	AT5G36170.2	39.257	377	222	5	47	416	65	441	1.66e-79	253
Msa0068410	AT5G36170.3	33.439	314	190	6	47	341	66	379	5.19e-47	166
Msa0068410	AT5G36170.4	33.439	314	190	6	47	341	65	378	6.31e-47	166
Msa0068410	AT1G56350.1	33.846	325	205	7	101	418	152	473	2.58e-43	158
Msa0068410	AT3G62910.1	24.507	355	248	10	73	414	50	397	7.83e-16	79.3
Msa0068410	AT2G47020.4	27.445	317	215	7	108	414	20	331	8.58e-13	69.7
Msa0068410	AT2G47020.1	27.445	317	215	7	108	414	85	396	1.20e-12	69.7
Msa0068410	AT2G47020.3	29.084	251	164	6	108	349	85	330	9.06e-12	67.0

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Find 94 sgRNAs with CRISPR-Local

Find 472 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACAAGGTTATGAAGGA+AGG	0.569293	1_2:+35061443	Msa0068410:CDS
AAAGGGCCATTTGATATGGC+AGG	0.516727	1_2:+35061218	Msa0068410:CDS
AAATGGCCCTTTAAGAAGCT+TGG	0.428987	1_2:-35061207	None:intergenic
AACCATTTGGAGCTGAACGA+AGG	0.651020	1_2:-35058260	None:intergenic
AAGGAGTTCACCACCTCATA+AGG	0.397909	1_2:+35061560	Msa0068410:CDS
AAGGATATCTACAAACAAGT+GGG	0.633968	1_2:+35058365	Msa0068410:CDS
AATAGACGTGAGCAACATAC+TGG	0.450203	1_2:+35061169	Msa0068410:CDS
ACATCATGTACTAACTTGTA+TGG	0.392795	1_2:-35064115	None:intergenic
ACATTACTGTATTCTTAATT+TGG	0.213787	1_2:+35064439	Msa0068410:three_prime_UTR
AGAAGCAAGTTGGATTAAGC+AGG	0.495038	1_2:+35060533	Msa0068410:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAGTGGAGCGAAATTT+CGG	+	chr1_2:35058138-35058157	Msa0068410:five_prime_UTR	30.0%
TAAGGATATCTACAAACAAG+TGG	+	chr1_2:35058364-35058383	Msa0068410:CDS	30.0%
AAGGATATCTACAAACAAGT+GGG	+	chr1_2:35058365-35058384	Msa0068410:CDS	30.0%
GGTGTTTGATTATGTTTATG+AGG	+	chr1_2:35058496-35058515	Msa0068410:intron	30.0%
TTGATTATGTTTATGAGGCA+CGG	+	chr1_2:35058501-35058520	Msa0068410:intron	30.0%
TGTTTCATAGGAGTGAAAAA+GGG	+	chr1_2:35058683-35058702	Msa0068410:intron	30.0%
AGACTAAGGACTTATAAGTA+GGG	-	chr1_2:35058837-35058856	None:intergenic	30.0%
AAGACTAAGGACTTATAAGT+AGG	-	chr1_2:35058838-35058857	None:intergenic	30.0%
ATATGGCAAGAATAAGACTA+AGG	-	chr1_2:35058851-35058870	None:intergenic	30.0%
TTTGAATGTGATATGGCATA+TGG	-	chr1_2:35058868-35058887	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	35058098	35064485	35058098	ID=Msa0068410;Name=Msa0068410
chr1_2	mRNA	35058098	35064485	35058098	ID=Msa0068410-mRNA-1;Parent=Msa0068410;Name=Msa0068410-mRNA-1;_AED=0.19;_eAED=0.19;_QI=108\|1\|1\|1\|1\|1\|6\|257\|420
chr1_2	exon	35058098	35058386	35058098	ID=Msa0068410-mRNA-1:exon:11230;Parent=Msa0068410-mRNA-1
chr1_2	exon	35060454	35060671	35060454	ID=Msa0068410-mRNA-1:exon:11231;Parent=Msa0068410-mRNA-1
chr1_2	exon	35061086	35061283	35061086	ID=Msa0068410-mRNA-1:exon:11232;Parent=Msa0068410-mRNA-1
chr1_2	exon	35061400	35061612	35061400	ID=Msa0068410-mRNA-1:exon:11233;Parent=Msa0068410-mRNA-1
chr1_2	exon	35062893	35063070	35062893	ID=Msa0068410-mRNA-1:exon:11234;Parent=Msa0068410-mRNA-1
chr1_2	exon	35063954	35064485	35063954	ID=Msa0068410-mRNA-1:exon:11235;Parent=Msa0068410-mRNA-1
chr1_2	five_prime_UTR	35058098	35058205	35058098	ID=Msa0068410-mRNA-1:five_prime_utr;Parent=Msa0068410-mRNA-1
chr1_2	CDS	35058206	35058386	35058206	ID=Msa0068410-mRNA-1:cds;Parent=Msa0068410-mRNA-1
chr1_2	CDS	35060454	35060671	35060454	ID=Msa0068410-mRNA-1:cds;Parent=Msa0068410-mRNA-1
chr1_2	CDS	35061086	35061283	35061086	ID=Msa0068410-mRNA-1:cds;Parent=Msa0068410-mRNA-1
chr1_2	CDS	35061400	35061612	35061400	ID=Msa0068410-mRNA-1:cds;Parent=Msa0068410-mRNA-1
chr1_2	CDS	35062893	35063070	35062893	ID=Msa0068410-mRNA-1:cds;Parent=Msa0068410-mRNA-1
chr1_2	CDS	35063954	35064228	35063954	ID=Msa0068410-mRNA-1:cds;Parent=Msa0068410-mRNA-1
chr1_2	three_prime_UTR	35064229	35064485	35064229	ID=Msa0068410-mRNA-1:three_prime_utr;Parent=Msa0068410-mRNA-1

Gene Sequence

>Msa0068410

ATGGAAACTATGGGGTCTGAAAGTTGTTGTGCAAGAACTGTTCATGATATTGTTCCTTCGTTCAGCTCCAAATGGTTGAGGAAGAAGAATCCACGTGTTGGACTGTTCTTGTGTTCTTTCAGAGTTAGAGCTTGTCAATCCATTGCTAACAACAATAATAAGGATATCTACAAACAAGTGGGTTTATTTTCCCTAAGAAGGAAAATCGAAGACACAGTTATTCGCGCTGAGTTGTATGCATCAACAGCTTTGGAAATGGAAGAAGCAAGTTGGATTAAGCAGGAAGAAATGGTACGTGATTCAGATCTGTGGGATGACCCAACTAAGTCCAACGACATTCTTGTCAAGTTGGCTAACAGTGCCAAAGTAGTTGATTCTCTAAAGGACTTGAGATACAAGGTAGAGGAAGCACAGCTGATCAAGCAGTTAGCTGAGATGAATGCTATTGATTACGGGCTCTATAAACAAGCATATGATGCATCAATAGACGTGAGCAACATACTGGATCAGTATGAGATATCCAAGCTTCTTAAAGGGCCATTTGATATGGCAGGAGCGTGTTTGGTTATAAAAGCCGCTACTGGCATCTTTTCAAAGCTCTGGGCAGAACAGCTCCTACAAATGTATCTTGGATGGGCCAAAAGACAAGGTTATGAAGGAAGGATTGTTGACAGGTGTTTGACCGAGAATGGAGGAATCAATTCAGCAACTATAGAGTTTGAATTTGAATGTGCTTATGGCTATCTTTTGGGGGAAAAAGGAGTTCACCACCTCATAAGGGGTTCTCCGAATGAATCTTCTCAGCTTGAGACTAGCACTGCAACTGTTGATGTTATTCCGTTGTTCCTAGAGAAATCTCGTGATCTTGAGATTGATTCCGAGGATTTGATTATCTCGTCTCCCTTGATTCATGGAGAACAGAAAAGACAAACTCAGCGTATAGTTTGCATTCATCATATACCTACTGGGATAACTGTCCAATCCTCTGGTGAGAGAAGCCAGTTTGCAAATAAGATGAAAGCACTAAACAGATTGAAAGCTAAACTTCAAGTGATAGCAATTGAACAAGGAGTTGGTAGTATAAATGGTATAGTGAAGGATAAAATTGTGAATCTGTGGGAAGAAAAAAGTAGGAGGTATGTATCTCATCCATACAAGTTAGTACATGATGTAAAGACTGGCATTGAGATGTCAGATCTAAATAGTGTTTTAGATGGGAATATTGGACCTCTTATTGCAGCTCATATTAATACTAGAGAGTAA

Protein sequence

>Msa0068410

METMGSESCCARTVHDIVPSFSSKWLRKKNPRVGLFLCSFRVRACQSIANNNNKDIYKQVGLFSLRRKIEDTVIRAELYASTALEMEEASWIKQEEMVRDSDLWDDPTKSNDILVKLANSAKVVDSLKDLRYKVEEAQLIKQLAEMNAIDYGLYKQAYDASIDVSNILDQYEISKLLKGPFDMAGACLVIKAATGIFSKLWAEQLLQMYLGWAKRQGYEGRIVDRCLTENGGINSATIEFEFECAYGYLLGEKGVHHLIRGSPNESSQLETSTATVDVIPLFLEKSRDLEIDSEDLIISSPLIHGEQKRQTQRIVCIHHIPTGITVQSSGERSQFANKMKALNRLKAKLQVIAIEQGVGSINGIVKDKIVNLWEEKSRRYVSHPYKLVHDVKTGIEMSDLNSVLDGNIGPLIAAHINTRE*