Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0319970 | KEH37161.1 | 95.370 | 108 | 5 | 0 | 79 | 186 | 33 | 140 | 2.07e-70 | 220 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0319970 | 0.821458 | 3.994890e-53 | -8.615850e-47 |
| Msa0043940 | Msa0319970 | 0.810097 | 1.365469e-50 | -8.615850e-47 |
| Msa0077410 | Msa0319970 | 0.806960 | 6.380387e-50 | -8.615850e-47 |
| Msa0084680 | Msa0319970 | 0.806092 | 9.729914e-50 | -8.615850e-47 |
| Msa0092710 | Msa0319970 | 0.813361 | 2.661839e-51 | -8.615850e-47 |
| Msa0146470 | Msa0319970 | 0.819672 | 1.027085e-52 | -8.615850e-47 |
| Msa0155610 | Msa0319970 | 0.803140 | 4.018778e-49 | -8.615850e-47 |
| Msa0157350 | Msa0319970 | 0.812680 | 3.752566e-51 | -8.615850e-47 |
| Msa0200010 | Msa0319970 | 0.840615 | 7.816016e-58 | -8.615850e-47 |
| Msa0265580 | Msa0319970 | 0.814118 | 1.813401e-51 | -8.615850e-47 |
| Msa0280730 | Msa0319970 | 0.842796 | 2.077137e-58 | -8.615850e-47 |
| Msa0319970 | Msa0432720 | 0.822756 | 1.997596e-53 | -8.615850e-47 |
| Msa0319970 | Msa0519200 | 0.804626 | 1.973813e-49 | -8.615850e-47 |
| Msa0319970 | Msa0525270 | 0.803024 | 4.245856e-49 | -8.615850e-47 |
| Msa0319970 | Msa0525280 | 0.810328 | 1.217322e-50 | -8.615850e-47 |
| Msa0319970 | Msa0532840 | 0.821781 | 3.364141e-53 | -8.615850e-47 |
| Msa0319970 | Msa0533010 | 0.819703 | 1.010369e-52 | -8.615850e-47 |
| Msa0319970 | Msa0561510 | 0.808097 | 3.661170e-50 | -8.615850e-47 |
| Msa0319970 | Msa0583740 | 0.815867 | 7.417747e-52 | -8.615850e-47 |
| Msa0319970 | Msa0607600 | -0.801006 | 1.103418e-48 | -8.615850e-47 |
| Msa0319970 | Msa0667970 | 0.803894 | 2.802893e-49 | -8.615850e-47 |
| Msa0319970 | Msa0687860 | -0.802396 | 5.723969e-49 | -8.615850e-47 |
| Msa0319970 | Msa0704220 | 0.815520 | 8.866418e-52 | -8.615850e-47 |
| Msa0319970 | Msa0725920 | 0.810302 | 1.233263e-50 | -8.615850e-47 |
| Msa0319970 | Msa0738880 | 0.832267 | 1.042374e-55 | -8.615850e-47 |
| Msa0319970 | Msa0766470 | 0.808192 | 3.494014e-50 | -8.615850e-47 |
| Msa0319970 | Msa0769830 | 0.813544 | 2.425888e-51 | -8.615850e-47 |
| Msa0319970 | Msa0803130 | 0.805678 | 1.188741e-49 | -8.615850e-47 |
| Msa0319970 | Msa0806720 | 0.803311 | 3.704098e-49 | -8.615850e-47 |
| Msa0319970 | Msa0806760 | 0.803402 | 3.546536e-49 | -8.615850e-47 |
| Msa0319970 | Msa0819320 | 0.838995 | 2.064587e-57 | -8.615850e-47 |
| Msa0319970 | Msa0819370 | 0.835364 | 1.751615e-56 | -8.615850e-47 |
| Msa0319970 | Msa0848760 | 0.814473 | 1.513028e-51 | -8.615850e-47 |
| Msa0319970 | Msa0877420 | 0.810885 | 9.226152e-51 | -8.615850e-47 |
| Msa0319970 | Msa0945960 | 0.800556 | 1.363286e-48 | -8.615850e-47 |
| Msa0319970 | Msa1027790 | 0.815496 | 8.973311e-52 | -8.615850e-47 |
| Msa0319970 | Msa1030870 | 0.819086 | 1.396663e-52 | -8.615850e-47 |
| Msa0319970 | Msa1049410 | 0.806528 | 7.874825e-50 | -8.615850e-47 |
| Msa0319970 | Msa1069960 | 0.800242 | 1.579664e-48 | -8.615850e-47 |
| Msa0319970 | Msa1072340 | 0.816478 | 5.418012e-52 | -8.615850e-47 |
| Msa0319970 | Msa1112610 | 0.805175 | 1.515098e-49 | -8.615850e-47 |
| Msa0319970 | Msa1118150 | 0.821507 | 3.891319e-53 | -8.615850e-47 |
| Msa0319970 | Msa1119860 | 0.800066 | 1.715741e-48 | -8.615850e-47 |
| Msa0319970 | Msa1134400 | 0.816682 | 4.875909e-52 | -8.615850e-47 |
| Msa0319970 | Msa1157730 | 0.802216 | 6.234092e-49 | -8.615850e-47 |
| Msa0319970 | Msa1159350 | 0.809166 | 2.164108e-50 | -8.615850e-47 |
| Msa0319970 | Msa1177240 | 0.820154 | 7.970148e-53 | -8.615850e-47 |
| Msa0319970 | Msa1183390 | 0.808153 | 3.561418e-50 | -8.615850e-47 |
| Msa0319970 | Msa1271510 | 0.809442 | 1.888665e-50 | -8.615850e-47 |
| Msa0319970 | Msa1293050 | 0.817815 | 2.711192e-52 | -8.615850e-47 |
| Msa0319970 | Msa1317030 | 0.819663 | 1.031920e-52 | -8.615850e-47 |
| Msa0319970 | Msa1365870 | 0.805138 | 1.542602e-49 | -8.615850e-47 |
| Msa0319970 | Msa1422890 | 0.809830 | 1.558207e-50 | -8.615850e-47 |
| Msa0319970 | Msa1439120 | 0.809696 | 1.665727e-50 | -8.615850e-47 |
| Msa0319970 | Msa1455660 | 0.812674 | 3.765293e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0319970 | MtrunA17_Chr2g0294771 | 96.703 | 91 | 3 | 0 | 96 | 186 | 1 | 91 | 6.29e-64 | 191 |
| Msa0319970 | MtrunA17_Chr5g0417751 | 46.847 | 111 | 48 | 3 | 79 | 182 | 1 | 107 | 5.45e-22 | 87.0 |
| Msa0319970 | MtrunA17_Chr2g0312591 | 57.143 | 70 | 27 | 1 | 117 | 186 | 36 | 102 | 3.02e-18 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0319970 | AT4G16146.1 | 71.053 | 76 | 22 | 0 | 111 | 186 | 18 | 93 | 8.83e-35 | 118 |
| Msa0319970 | AT1G69510.3 | 60.526 | 76 | 27 | 1 | 111 | 186 | 26 | 98 | 2.76e-22 | 87.8 |
| Msa0319970 | AT1G69510.2 | 60.526 | 76 | 27 | 1 | 111 | 186 | 26 | 98 | 2.76e-22 | 87.8 |
| Msa0319970 | AT1G69510.1 | 60.526 | 76 | 27 | 1 | 111 | 186 | 26 | 98 | 2.76e-22 | 87.8 |
| Msa0319970 | AT5G64130.1 | 51.190 | 84 | 36 | 2 | 93 | 174 | 7 | 87 | 4.60e-18 | 76.3 |
| Msa0319970 | AT5G64130.3 | 38.655 | 119 | 42 | 4 | 93 | 184 | 7 | 121 | 4.88e-13 | 63.5 |
Find 45 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATATGAATCATTTAAATT+TGG | 0.171976 | 2_4:-20087212 | None:intergenic |
| ATCTTCTCTTAGCTTGATTT+TGG | 0.217579 | 2_4:+20087562 | Msa0319970:CDS |
| ACATAGAAATGTATGCAATT+TGG | 0.276918 | 2_4:+20087171 | Msa0319970:five_prime_UTR |
| GTTATGTACCTCAACGTTAT+TGG | 0.287248 | 2_4:-20087779 | None:intergenic |
| GATGTGCATGCAGGTCTTCT+TGG | 0.315613 | 2_4:-20090060 | None:intergenic |
| ATGTGCATGCAGGTCTTCTT+GGG | 0.321512 | 2_4:-20090059 | None:intergenic |
| TCAATTTCTTCTTGTATTCA+AGG | 0.328368 | 2_4:+20090395 | Msa0319970:three_prime_UTR |
| ACAAAATGGCATAACAATAA+TGG | 0.371780 | 2_4:-20087240 | None:intergenic |
| AGAAGACCTGCATGCACATC+TGG | 0.388554 | 2_4:+20090063 | Msa0319970:CDS |
| ATGTAATATATCTTAGCATT+TGG | 0.417547 | 2_4:+20087306 | Msa0319970:CDS |
| ACATTTCTATGTGGATAGAT+AGG | 0.434153 | 2_4:-20087160 | None:intergenic |
| CTAGGAAAGAAGCTACAAAA+TGG | 0.435486 | 2_4:-20087254 | None:intergenic |
| ACATCCGTGGGCAAGAAGTA+TGG | 0.440418 | 2_4:+20089516 | Msa0319970:CDS |
| AATACAAGAAGAAATTGAAA+TGG | 0.454353 | 2_4:-20090390 | None:intergenic |
| AAATTTCATGATGTTCTAGC+TGG | 0.455127 | 2_4:+20090273 | Msa0319970:three_prime_UTR |
| GGGAGAGTAGATTCAACAAT+TGG | 0.457081 | 2_4:+20090220 | Msa0319970:three_prime_UTR |
| GACCTTGCAGCCAAAACTAC+AGG | 0.500120 | 2_4:+20089893 | Msa0319970:CDS |
| TCATACATAAATTATTGTGC+AGG | 0.501845 | 2_4:+20090199 | Msa0319970:intron |
| TAATCTCTACAGCAAGGTGC+TGG | 0.502471 | 2_4:+20089840 | Msa0319970:intron |
| CAAAAGCAAGATGAAAGATA+AGG | 0.509914 | 2_4:-20087612 | None:intergenic |
| GAAGAGAGGTTTGAGTGAGA+AGG | 0.524064 | 2_4:-20087352 | None:intergenic |
| AGGCTTACTTTGGATATCAA+AGG | 0.525503 | 2_4:-20089561 | None:intergenic |
| TGTAAATTAGTCAACATCCG+TGG | 0.564269 | 2_4:+20089503 | Msa0319970:intron |
| TCTCAACCAGATGTGCATGC+AGG | 0.567084 | 2_4:-20090069 | None:intergenic |
| ATTACCTTGTGGTGGGAGCA+AGG | 0.568180 | 2_4:-20087432 | None:intergenic |
| CATACATAAATTATTGTGCA+GGG | 0.575887 | 2_4:+20090200 | Msa0319970:intron |
| TGTTGAATAGGTAAAGGAGA+TGG | 0.580212 | 2_4:+20087726 | Msa0319970:intron |
| AAATTGCATACATTTCTATG+TGG | 0.580832 | 2_4:-20087169 | None:intergenic |
| TGTTGATAATTACCTTGTGG+TGG | 0.586982 | 2_4:-20087440 | None:intergenic |
| AGCAGACTGGGCATTATGCA+AGG | 0.588087 | 2_4:+20089738 | Msa0319970:CDS |
| AAAGTAGAGACAATGAAGAG+AGG | 0.589022 | 2_4:-20087366 | None:intergenic |
| GTAAATTAGTCAACATCCGT+GGG | 0.589767 | 2_4:+20089504 | Msa0319970:intron |
| TCCGTGGGCAAGAAGTATGG+TGG | 0.600109 | 2_4:+20089519 | Msa0319970:CDS |
| TAATTATATTATACGAGGAG+AGG | 0.605739 | 2_4:-20087277 | None:intergenic |
| ATATTATACGAGGAGAGGCT+AGG | 0.606715 | 2_4:-20087272 | None:intergenic |
| TGTGCATGCAGGTCTTCTTG+GGG | 0.609417 | 2_4:-20090058 | None:intergenic |
| CCGTGGGCAAGAAGTATGGT+GGG | 0.615015 | 2_4:+20089520 | Msa0319970:CDS |
| GTTGATAATTACCTTGTGGT+GGG | 0.633369 | 2_4:-20087439 | None:intergenic |
| TCTACCTTGCTCCCACCACA+AGG | 0.640342 | 2_4:+20087428 | Msa0319970:CDS |
| TATAATAATTATATTATACG+AGG | 0.643160 | 2_4:-20087282 | None:intergenic |
| ATATATCTTAGCATTTGGTG+TGG | 0.651457 | 2_4:+20087311 | Msa0319970:CDS |
| CCCACCATACTTCTTGCCCA+CGG | 0.652575 | 2_4:-20089520 | None:intergenic |
| TAGATTCAACAATTGGCACA+AGG | 0.656838 | 2_4:+20090227 | Msa0319970:three_prime_UTR |
| GTGCATGCAGGTCTTCTTGG+GGG | 0.664744 | 2_4:-20090057 | None:intergenic |
| TTATGCTGCCAATAACGTTG+AGG | 0.670547 | 2_4:+20087771 | Msa0319970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATGAATCATTTAAATT+TGG | - | chr2_4:20087215-20087234 | None:intergenic | 10.0% |
| !! | TATAATAATTATATTATACG+AGG | - | chr2_4:20087285-20087304 | None:intergenic | 10.0% |
| !! | ATATTTAATGTGAAAATATA+AGG | - | chr2_4:20087887-20087906 | None:intergenic | 10.0% |
| !! | TTTAGTTGTATAATATATAA+TGG | - | chr2_4:20087914-20087933 | None:intergenic | 10.0% |
| !!! | ATTTTCTTTTTTTGTTAAAA+AGG | + | chr2_4:20089690-20089709 | Msa0319970:intron | 10.0% |
| !! | AATATGGATATATAATTTAT+TGG | + | chr2_4:20089813-20089832 | Msa0319970:intron | 10.0% |
| !!! | TACTTTTTATCTTTTTTCAT+TGG | + | chr2_4:20087383-20087402 | Msa0319970:CDS | 15.0% |
| !! | AACAACATAGAAAATAAAAT+AGG | - | chr2_4:20087490-20087509 | None:intergenic | 15.0% |
| !! | ATTGATTAATCTTCATTAAA+TGG | + | chr2_4:20087686-20087705 | Msa0319970:intron | 15.0% |
| !! | TGAAAAATATTTCATGTATA+TGG | - | chr2_4:20087857-20087876 | None:intergenic | 15.0% |
| !!! | CAAATGATAATGAAAATTAA+AGG | + | chr2_4:20088015-20088034 | Msa0319970:intron | 15.0% |
| !!! | ATATACATGTACATTTTAAA+AGG | + | chr2_4:20088367-20088386 | Msa0319970:intron | 15.0% |
| !!! | TATACATGTACATTTTAAAA+GGG | + | chr2_4:20088368-20088387 | Msa0319970:intron | 15.0% |
| !!! | CATTATTAATTTTTACATGA+AGG | + | chr2_4:20088403-20088422 | Msa0319970:intron | 15.0% |
| !! | TAGAAAACTATAATTTCATA+AGG | - | chr2_4:20088573-20088592 | None:intergenic | 15.0% |
| !!! | TATGAAATTATAGTTTTCTA+AGG | + | chr2_4:20088573-20088592 | Msa0319970:intron | 15.0% |
| !! | ATCCTTATGTAAAAAAATTA+TGG | - | chr2_4:20089257-20089276 | None:intergenic | 15.0% |
| !!! | TTTTTTTAAATAACAGTCAA+TGG | - | chr2_4:20089359-20089378 | None:intergenic | 15.0% |
| !! | TATTCAGTATTATAAAAGTT+AGG | - | chr2_4:20089438-20089457 | None:intergenic | 15.0% |
| !!! | TTTCTTTTAATTCTTTTTGT+TGG | + | chr2_4:20089463-20089482 | Msa0319970:intron | 15.0% |
| !!! | AAAAATGTTGTTTTTCATAT+AGG | - | chr2_4:20089584-20089603 | None:intergenic | 15.0% |
| !! | GTTAACAAAAAAGTAAAATA+CGG | - | chr2_4:20089635-20089654 | None:intergenic | 15.0% |
| !!! | ACAAAATTCATTTTCTAATA+TGG | + | chr2_4:20089797-20089816 | Msa0319970:intron | 15.0% |
| !! | AAAATAAAAACAAAAAACAG+AGG | - | chr2_4:20090001-20090020 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAGTGAACTAA+TGG | - | chr2_4:20090313-20090332 | None:intergenic | 15.0% |
| !! | ATGTAATATATCTTAGCATT+TGG | + | chr2_4:20087306-20087325 | Msa0319970:CDS | 20.0% |
| !! | CACTTATATGCTATAAAAAT+TGG | + | chr2_4:20087512-20087531 | Msa0319970:intron | 20.0% |
| !!! | TTTGATTTGTTTTGTTGAAT+AGG | + | chr2_4:20087714-20087733 | Msa0319970:intron | 20.0% |
| !!! | AAATCCTCTAAAAAAAATGT+AGG | - | chr2_4:20088335-20088354 | None:intergenic | 20.0% |
| !! | AAATGTACATGTATATATGA+AGG | - | chr2_4:20088363-20088382 | None:intergenic | 20.0% |
| !! | TGAAAGCTGTAAATATAAAT+CGG | - | chr2_4:20088437-20088456 | None:intergenic | 20.0% |
| !!! | TTTAGCATGAAGATATTTTT+AGG | + | chr2_4:20088504-20088523 | Msa0319970:intron | 20.0% |
| !!! | TTAGCATGAAGATATTTTTA+GGG | + | chr2_4:20088505-20088524 | Msa0319970:intron | 20.0% |
| !! | AACTATAATTTCATAAGGTA+GGG | - | chr2_4:20088568-20088587 | None:intergenic | 20.0% |
| !! | AAACTATAATTTCATAAGGT+AGG | - | chr2_4:20088569-20088588 | None:intergenic | 20.0% |
| !! | ATAAATTCTTATGTGTAGTA+GGG | - | chr2_4:20088806-20088825 | None:intergenic | 20.0% |
| !! | AATAAATTCTTATGTGTAGT+AGG | - | chr2_4:20088807-20088826 | None:intergenic | 20.0% |
| !! | AAAGTCACTAAAATATCATA+TGG | + | chr2_4:20089084-20089103 | Msa0319970:intron | 20.0% |
| !! | AAGTCACTAAAATATCATAT+GGG | + | chr2_4:20089085-20089104 | Msa0319970:intron | 20.0% |
| !! | AAGCAAATTAGTAAATCATA+AGG | + | chr2_4:20089163-20089182 | Msa0319970:intron | 20.0% |
| !!! | CTCCATAATTTTTTTACATA+AGG | + | chr2_4:20089252-20089271 | Msa0319970:intron | 20.0% |
| !! | GAAAAAACATTAGATTTAGT+TGG | - | chr2_4:20089663-20089682 | None:intergenic | 20.0% |
| !! | ACAAAAAAAGAAAATAGAGA+AGG | - | chr2_4:20089685-20089704 | None:intergenic | 20.0% |
| !! | TTGTTAAAAAGGATAATGAA+AGG | + | chr2_4:20089701-20089720 | Msa0319970:intron | 20.0% |
| !! | TGTTAAAAAGGATAATGAAA+GGG | + | chr2_4:20089702-20089721 | Msa0319970:intron | 20.0% |
| !! | AATACAAGAAGAAATTGAAA+TGG | - | chr2_4:20090393-20090412 | None:intergenic | 20.0% |
| ! | AAATTGCATACATTTCTATG+TGG | - | chr2_4:20087172-20087191 | None:intergenic | 25.0% |
| ! | ACATAGAAATGTATGCAATT+TGG | + | chr2_4:20087171-20087190 | Msa0319970:five_prime_UTR | 25.0% |
| ! | ACAAAATGGCATAACAATAA+TGG | - | chr2_4:20087243-20087262 | None:intergenic | 25.0% |
| ! | TAATTATATTATACGAGGAG+AGG | - | chr2_4:20087280-20087299 | None:intergenic | 25.0% |
| !!! | TTGTTTTGTTGAATAGGTAA+AGG | + | chr2_4:20087720-20087739 | Msa0319970:intron | 25.0% |
| !!! | TAGGCTTTCTGAAATTATAT+TGG | + | chr2_4:20088162-20088181 | Msa0319970:intron | 25.0% |
| ! | TCATATATTTATTGGACACA+TGG | - | chr2_4:20088278-20088297 | None:intergenic | 25.0% |
| !!! | ATGACCTACATTTTTTTTAG+AGG | + | chr2_4:20088328-20088347 | Msa0319970:intron | 25.0% |
| ! | TTTCTAACCGACAATTTAAT+TGG | - | chr2_4:20088533-20088552 | None:intergenic | 25.0% |
| ! | TGATGAAATCAAAGTAGATT+AGG | + | chr2_4:20088882-20088901 | Msa0319970:intron | 25.0% |
| ! | AAGTAGATTAGGTTCAAATT+AGG | + | chr2_4:20088893-20088912 | Msa0319970:intron | 25.0% |
| ! | TATGGTAAAAGAATTAAGGA+CGG | + | chr2_4:20089004-20089023 | Msa0319970:intron | 25.0% |
| !! | ATCCAAATGCATTTTAAATG+AGG | + | chr2_4:20089275-20089294 | Msa0319970:intron | 25.0% |
| !!! | ATATCAAAGGCTTTTTCTTT+GGG | - | chr2_4:20089551-20089570 | None:intergenic | 25.0% |
| !! | TTTTTCATATAGGCTTACTT+TGG | - | chr2_4:20089574-20089593 | None:intergenic | 25.0% |
| !! | AAAAAATGTACCTGTAGTTT+TGG | - | chr2_4:20089906-20089925 | None:intergenic | 25.0% |
| ! | AACAAAAAACAGAGGAAAAA+TGG | - | chr2_4:20089993-20090012 | None:intergenic | 25.0% |
| ! | TCATACATAAATTATTGTGC+AGG | + | chr2_4:20090199-20090218 | Msa0319970:intron | 25.0% |
| ! | CATACATAAATTATTGTGCA+GGG | + | chr2_4:20090200-20090219 | Msa0319970:intron | 25.0% |
| ! | TCAATTTCTTCTTGTATTCA+AGG | + | chr2_4:20090395-20090414 | Msa0319970:three_prime_UTR | 25.0% |
| ACATTTCTATGTGGATAGAT+AGG | - | chr2_4:20087163-20087182 | None:intergenic | 30.0% | |
| ! | ATATATCTTAGCATTTGGTG+TGG | + | chr2_4:20087311-20087330 | Msa0319970:CDS | 30.0% |
| !! | TGATGTTGATAATTACCTTG+TGG | - | chr2_4:20087446-20087465 | None:intergenic | 30.0% |
| AGAGAAGATGCTATAGTAAA+TGG | - | chr2_4:20087551-20087570 | None:intergenic | 30.0% | |
| !! | ATCTTCTCTTAGCTTGATTT+TGG | + | chr2_4:20087562-20087581 | Msa0319970:CDS | 30.0% |
| CAAAAGCAAGATGAAAGATA+AGG | - | chr2_4:20087615-20087634 | None:intergenic | 30.0% | |
| !! | TATCTTTCATCTTGCTTTTG+TGG | + | chr2_4:20087615-20087634 | Msa0319970:CDS | 30.0% |
| !! | ATCTTTCATCTTGCTTTTGT+GGG | + | chr2_4:20087616-20087635 | Msa0319970:CDS | 30.0% |
| ! | AAACAAAACAGATGAGTTGA+GGG | - | chr2_4:20087809-20087828 | None:intergenic | 30.0% |
| AAAACAAAACAGATGAGTTG+AGG | - | chr2_4:20087810-20087829 | None:intergenic | 30.0% | |
| !! | CATTTTAATCTCCTTTAACG+TGG | + | chr2_4:20087960-20087979 | Msa0319970:intron | 30.0% |
| ! | GATGAAAAAAAAGAGTACGT+TGG | - | chr2_4:20088091-20088110 | None:intergenic | 30.0% |
| ! | TATATTGGTTGTCTAGTTTC+TGG | + | chr2_4:20088177-20088196 | Msa0319970:intron | 30.0% |
| TAGGGATCCAATTAAATTGT+CGG | + | chr2_4:20088523-20088542 | Msa0319970:intron | 30.0% | |
| TAAACCTAGAATTCGTCAAA+TGG | + | chr2_4:20088917-20088936 | Msa0319970:intron | 30.0% | |
| ATTTCCATTTGACGAATTCT+AGG | - | chr2_4:20088924-20088943 | None:intergenic | 30.0% | |
| ATCCCTATTAAGTCACTTAA+AGG | + | chr2_4:20088958-20088977 | Msa0319970:intron | 30.0% | |
| GTCCTTTAAGTGACTTAATA+GGG | - | chr2_4:20088963-20088982 | None:intergenic | 30.0% | |
| TGTCCTTTAAGTGACTTAAT+AGG | - | chr2_4:20088964-20088983 | None:intergenic | 30.0% | |
| TGGCTATGGTAAAAGAATTA+AGG | + | chr2_4:20089000-20089019 | Msa0319970:intron | 30.0% | |
| ATGGTAAAAGAATTAAGGAC+GGG | + | chr2_4:20089005-20089024 | Msa0319970:intron | 30.0% | |
| TCACTAAAATATCATATGGG+TGG | + | chr2_4:20089088-20089107 | Msa0319970:intron | 30.0% | |
| CACTAAAATATCATATGGGT+GGG | + | chr2_4:20089089-20089108 | Msa0319970:intron | 30.0% | |
| ! | TGCCTCATTTAAAATGCATT+TGG | - | chr2_4:20089280-20089299 | None:intergenic | 30.0% |
| ! | TGGTCTTGAATTTATCTTGT+TGG | + | chr2_4:20089402-20089421 | Msa0319970:intron | 30.0% |
| !! | GATATCAAAGGCTTTTTCTT+TGG | - | chr2_4:20089552-20089571 | None:intergenic | 30.0% |
| !!! | ATTTTTTGATTCAGCAGACT+GGG | + | chr2_4:20089726-20089745 | Msa0319970:CDS | 30.0% |
| ! | TACTCTAATCTTTTAGTCAC+TGG | + | chr2_4:20090105-20090124 | Msa0319970:intron | 30.0% |
| AAATTTCATGATGTTCTAGC+TGG | + | chr2_4:20090273-20090292 | Msa0319970:three_prime_UTR | 30.0% | |
| !! | CACTTGATGCTTTTGATTAT+TGG | + | chr2_4:20090352-20090371 | Msa0319970:intron | 30.0% |
| CTAGGAAAGAAGCTACAAAA+TGG | - | chr2_4:20087257-20087276 | None:intergenic | 35.0% | |
| AAAGTAGAGACAATGAAGAG+AGG | - | chr2_4:20087369-20087388 | None:intergenic | 35.0% | |
| !! | GTTGATAATTACCTTGTGGT+GGG | - | chr2_4:20087442-20087461 | None:intergenic | 35.0% |
| !! | TGTTGATAATTACCTTGTGG+TGG | - | chr2_4:20087443-20087462 | None:intergenic | 35.0% |
| TGTTGAATAGGTAAAGGAGA+TGG | + | chr2_4:20087726-20087745 | Msa0319970:intron | 35.0% | |
| GTTATGTACCTCAACGTTAT+TGG | - | chr2_4:20087782-20087801 | None:intergenic | 35.0% | |
| GTACAAGTAATGTGCACAAT+TGG | - | chr2_4:20088069-20088088 | None:intergenic | 35.0% | |
| TCATGTTTGTACCATGTACT+TGG | + | chr2_4:20088109-20088128 | Msa0319970:intron | 35.0% | |
| ! | CAATTGAAGTACCAAGTACA+TGG | - | chr2_4:20088123-20088142 | None:intergenic | 35.0% |
| TGTCTATCATACATGCATCT+AGG | + | chr2_4:20088143-20088162 | Msa0319970:intron | 35.0% | |
| TTGGACACATGGAAATGAAA+GGG | - | chr2_4:20088267-20088286 | None:intergenic | 35.0% | |
| ATTGGACACATGGAAATGAA+AGG | - | chr2_4:20088268-20088287 | None:intergenic | 35.0% | |
| ! | TTGTCGGTTAGAAAGTTCTA+AGG | + | chr2_4:20088539-20088558 | Msa0319970:intron | 35.0% |
| ! | TGTCGGTTAGAAAGTTCTAA+GGG | + | chr2_4:20088540-20088559 | Msa0319970:intron | 35.0% |
| CAAAACAAAACAAGCCTAAC+TGG | + | chr2_4:20088633-20088652 | Msa0319970:intron | 35.0% | |
| AGTCACTTAAAGGACATACA+AGG | + | chr2_4:20088968-20088987 | Msa0319970:intron | 35.0% | |
| CAAAGTTGTCAACTAAGACT+AGG | - | chr2_4:20089190-20089209 | None:intergenic | 35.0% | |
| ! | AAAACCATTGACTGTTGTGA+TGG | + | chr2_4:20089382-20089401 | Msa0319970:intron | 35.0% |
| TGTAAATTAGTCAACATCCG+TGG | + | chr2_4:20089503-20089522 | Msa0319970:intron | 35.0% | |
| GTAAATTAGTCAACATCCGT+GGG | + | chr2_4:20089504-20089523 | Msa0319970:intron | 35.0% | |
| AGGCTTACTTTGGATATCAA+AGG | - | chr2_4:20089564-20089583 | None:intergenic | 35.0% | |
| !!! | CATTTTTTGATTCAGCAGAC+TGG | + | chr2_4:20089725-20089744 | Msa0319970:CDS | 35.0% |
| GGAATTTAATCTCTACAGCA+AGG | + | chr2_4:20089834-20089853 | Msa0319970:intron | 35.0% | |
| TAGATTCAACAATTGGCACA+AGG | + | chr2_4:20090227-20090246 | Msa0319970:three_prime_UTR | 35.0% | |
| !! | AAAAGCATCAAGTGAGCTAA+TGG | - | chr2_4:20090346-20090365 | None:intergenic | 35.0% |
| ATATTATACGAGGAGAGGCT+AGG | - | chr2_4:20087275-20087294 | None:intergenic | 40.0% | |
| TTATGCTGCCAATAACGTTG+AGG | + | chr2_4:20087771-20087790 | Msa0319970:CDS | 40.0% | |
| ! | AAACAGATGAGTTGAGGGTT+AGG | - | chr2_4:20087804-20087823 | None:intergenic | 40.0% |
| ACATTAGTTCGCCACGTTAA+AGG | - | chr2_4:20087974-20087993 | None:intergenic | 40.0% | |
| GAATAAGATACGTGCACATG+TGG | + | chr2_4:20088039-20088058 | Msa0319970:intron | 40.0% | |
| TGGACACATGGAAATGAAAG+GGG | - | chr2_4:20088266-20088285 | None:intergenic | 40.0% | |
| !! | GTCGGTTAGAAAGTTCTAAG+GGG | + | chr2_4:20088541-20088560 | Msa0319970:intron | 40.0% |
| GCTCATGTTTGGGAGAAATA+AGG | - | chr2_4:20088688-20088707 | None:intergenic | 40.0% | |
| TTCTTATGTGTAGTAGGGAG+AGG | - | chr2_4:20088801-20088820 | None:intergenic | 40.0% | |
| AAGGACATACAAGGATGACT+TGG | + | chr2_4:20088977-20088996 | Msa0319970:intron | 40.0% | |
| AAGACCATCACAACAGTCAA+TGG | - | chr2_4:20089389-20089408 | None:intergenic | 40.0% | |
| GGGAGAGTAGATTCAACAAT+TGG | + | chr2_4:20090220-20090239 | Msa0319970:three_prime_UTR | 40.0% | |
| GAAGAGAGGTTTGAGTGAGA+AGG | - | chr2_4:20087355-20087374 | None:intergenic | 45.0% | |
| AAACAAGCCTAACTGGCTGT+AGG | + | chr2_4:20088640-20088659 | Msa0319970:intron | 45.0% | |
| AACAAGCCTAACTGGCTGTA+GGG | + | chr2_4:20088641-20088660 | Msa0319970:intron | 45.0% | |
| TCCCAAACATGAGCTTCTCA+TGG | + | chr2_4:20088694-20088713 | Msa0319970:intron | 45.0% | |
| GCCATGAGAAGCTCATGTTT+GGG | - | chr2_4:20088698-20088717 | None:intergenic | 45.0% | |
| TGCCATGAGAAGCTCATGTT+TGG | - | chr2_4:20088699-20088718 | None:intergenic | 45.0% | |
| ! | GACATACAAGGATGACTTGG+TGG | + | chr2_4:20088980-20088999 | Msa0319970:intron | 45.0% |
| TAATCTCTACAGCAAGGTGC+TGG | + | chr2_4:20089840-20089859 | Msa0319970:intron | 45.0% | |
| !! | TTTTGGCTGCAAGGTCTCTA+CGG | - | chr2_4:20089889-20089908 | None:intergenic | 45.0% |
| !!! | TACCTGTAGTTTTGGCTGCA+AGG | - | chr2_4:20089898-20089917 | None:intergenic | 45.0% |
| ATGTGCATGCAGGTCTTCTT+GGG | - | chr2_4:20090062-20090081 | None:intergenic | 45.0% | |
| !! | TTATAAAATCATATATTTAT+TGG | - | chr2_4:20088286-20088305 | None:intergenic | 5.0% |
| !!! | TTTTTTAAAATTAAGAAAAA+AGG | + | chr2_4:20088472-20088491 | Msa0319970:intron | 5.0% |
| ! | ATTACCTTGTGGTGGGAGCA+AGG | - | chr2_4:20087435-20087454 | None:intergenic | 50.0% |
| !! | CAAGGATGACTTGGTGGCTA+TGG | + | chr2_4:20088986-20089005 | Msa0319970:intron | 50.0% |
| ACATCCGTGGGCAAGAAGTA+TGG | + | chr2_4:20089516-20089535 | Msa0319970:CDS | 50.0% | |
| AGCAGACTGGGCATTATGCA+AGG | + | chr2_4:20089738-20089757 | Msa0319970:CDS | 50.0% | |
| GACCTTGCAGCCAAAACTAC+AGG | + | chr2_4:20089893-20089912 | Msa0319970:CDS | 50.0% | |
| TGTGCATGCAGGTCTTCTTG+GGG | - | chr2_4:20090061-20090080 | None:intergenic | 50.0% | |
| GATGTGCATGCAGGTCTTCT+TGG | - | chr2_4:20090063-20090082 | None:intergenic | 50.0% | |
| AGAAGACCTGCATGCACATC+TGG | + | chr2_4:20090063-20090082 | Msa0319970:CDS | 50.0% | |
| TCTCAACCAGATGTGCATGC+AGG | - | chr2_4:20090072-20090091 | None:intergenic | 50.0% | |
| TCTACCTTGCTCCCACCACA+AGG | + | chr2_4:20087428-20087447 | Msa0319970:CDS | 55.0% | |
| TGACAGCCCTACAGCCAGTT+AGG | - | chr2_4:20088650-20088669 | None:intergenic | 55.0% | |
| ! | TCCGTGGGCAAGAAGTATGG+TGG | + | chr2_4:20089519-20089538 | Msa0319970:CDS | 55.0% |
| CCCACCATACTTCTTGCCCA+CGG | - | chr2_4:20089523-20089542 | None:intergenic | 55.0% | |
| ! | CCGTGGGCAAGAAGTATGGT+GGG | + | chr2_4:20089520-20089539 | Msa0319970:CDS | 55.0% |
| GTGCATGCAGGTCTTCTTGG+GGG | - | chr2_4:20090060-20090079 | None:intergenic | 55.0% | |
| CTTGGGGGAAGCTGCTGATG+TGG | - | chr2_4:20090045-20090064 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 20087149 | 20090419 | 20087149 | ID=Msa0319970;Name=Msa0319970 |
| chr2_4 | mRNA | 20087149 | 20090419 | 20087149 | ID=Msa0319970-mRNA-1;Parent=Msa0319970;Name=Msa0319970-mRNA-1;_AED=0.22;_eAED=0.22;_QI=102|1|1|1|0.62|0.44|9|193|186 |
| chr2_4 | exon | 20087149 | 20087449 | 20087149 | ID=Msa0319970-mRNA-1:exon:7431;Parent=Msa0319970-mRNA-1 |
| chr2_4 | exon | 20087561 | 20087637 | 20087561 | ID=Msa0319970-mRNA-1:exon:7432;Parent=Msa0319970-mRNA-1 |
| chr2_4 | exon | 20087736 | 20087792 | 20087736 | ID=Msa0319970-mRNA-1:exon:7433;Parent=Msa0319970-mRNA-1 |
| chr2_4 | exon | 20089513 | 20089575 | 20089513 | ID=Msa0319970-mRNA-1:exon:7434;Parent=Msa0319970-mRNA-1 |
| chr2_4 | exon | 20089712 | 20089759 | 20089712 | ID=Msa0319970-mRNA-1:exon:7435;Parent=Msa0319970-mRNA-1 |
| chr2_4 | exon | 20089852 | 20089914 | 20089852 | ID=Msa0319970-mRNA-1:exon:7436;Parent=Msa0319970-mRNA-1 |
| chr2_4 | exon | 20090036 | 20090098 | 20090036 | ID=Msa0319970-mRNA-1:exon:7437;Parent=Msa0319970-mRNA-1 |
| chr2_4 | exon | 20090203 | 20090321 | 20090203 | ID=Msa0319970-mRNA-1:exon:7438;Parent=Msa0319970-mRNA-1 |
| chr2_4 | exon | 20090355 | 20090419 | 20090355 | ID=Msa0319970-mRNA-1:exon:7439;Parent=Msa0319970-mRNA-1 |
| chr2_4 | five_prime_UTR | 20087149 | 20087250 | 20087149 | ID=Msa0319970-mRNA-1:five_prime_utr;Parent=Msa0319970-mRNA-1 |
| chr2_4 | CDS | 20087251 | 20087449 | 20087251 | ID=Msa0319970-mRNA-1:cds;Parent=Msa0319970-mRNA-1 |
| chr2_4 | CDS | 20087561 | 20087637 | 20087561 | ID=Msa0319970-mRNA-1:cds;Parent=Msa0319970-mRNA-1 |
| chr2_4 | CDS | 20087736 | 20087792 | 20087736 | ID=Msa0319970-mRNA-1:cds;Parent=Msa0319970-mRNA-1 |
| chr2_4 | CDS | 20089513 | 20089575 | 20089513 | ID=Msa0319970-mRNA-1:cds;Parent=Msa0319970-mRNA-1 |
| chr2_4 | CDS | 20089712 | 20089759 | 20089712 | ID=Msa0319970-mRNA-1:cds;Parent=Msa0319970-mRNA-1 |
| chr2_4 | CDS | 20089852 | 20089914 | 20089852 | ID=Msa0319970-mRNA-1:cds;Parent=Msa0319970-mRNA-1 |
| chr2_4 | CDS | 20090036 | 20090089 | 20090036 | ID=Msa0319970-mRNA-1:cds;Parent=Msa0319970-mRNA-1 |
| chr2_4 | three_prime_UTR | 20090090 | 20090098 | 20090090 | ID=Msa0319970-mRNA-1:three_prime_utr;Parent=Msa0319970-mRNA-1 |
| chr2_4 | three_prime_UTR | 20090203 | 20090321 | 20090203 | ID=Msa0319970-mRNA-1:three_prime_utr;Parent=Msa0319970-mRNA-1 |
| chr2_4 | three_prime_UTR | 20090355 | 20090419 | 20090355 | ID=Msa0319970-mRNA-1:three_prime_utr;Parent=Msa0319970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
