AlfalfaGEDB | Msa1422890

M. sativa cultivar zhongmu-4 / Msa1422890

KEGG: -
GO: -
PFAM: PF09713.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1422890	A0A396GKL3	83.871	124	8	2	1	122	1	114	3.24e-66	206

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa1422890	0.819579	1.078648e-52	-8.615850e-47
Msa0001460	Msa1422890	0.802759	4.816844e-49	-8.615850e-47
Msa0003470	Msa1422890	0.817590	3.048040e-52	-8.615850e-47
Msa0008850	Msa1422890	0.808656	2.782071e-50	-8.615850e-47
Msa0012460	Msa1422890	0.820641	6.160162e-53	-8.615850e-47
Msa0014410	Msa1422890	0.820905	5.358088e-53	-8.615850e-47
Msa0017120	Msa1422890	0.830226	3.309333e-55	-8.615850e-47
Msa0020630	Msa1422890	0.862186	6.057580e-64	-8.615850e-47
Msa0027540	Msa1422890	0.805807	1.116596e-49	-8.615850e-47
Msa0029620	Msa1422890	0.812247	4.667257e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1422890	MtrunA17_Chr8g0368511	83.871	124	8	2	1	122	1	114	6.24e-70	206
Msa1422890	MtrunA17_Chr7g0263161	48.529	68	35	0	64	131	15	82	6.05e-19	75.9
Msa1422890	MtrunA17_Chr7g0222601	49.254	67	24	1	47	113	15	71	7.05e-19	76.3
Msa1422890	MtrunA17_Chr1g0212831	46.970	66	25	1	46	111	9	64	2.66e-16	69.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1422890	AT1G10657.2	48.454	97	39	2	25	121	1	86	4.41e-27	97.4
Msa1422890	AT1G10657.3	48.454	97	39	2	25	121	1	86	4.78e-27	97.4
Msa1422890	AT1G10657.1	38.843	121	39	3	25	121	1	110	1.64e-21	84.0
Msa1422890	AT1G10657.4	38.843	121	39	3	25	121	1	110	1.84e-21	83.6
Msa1422890	AT3G55240.1	51.515	66	22	1	46	111	8	63	5.88e-20	79.0
Msa1422890	AT3G28990.1	37.805	82	41	1	41	122	3	74	4.29e-16	68.9
Msa1422890	AT5G02580.1	49.180	61	29	1	64	122	18	78	1.97e-15	67.4
Msa1422890	AT5G02580.3	49.180	61	29	1	64	122	11	71	3.82e-15	66.2
Msa1422890	AT2G46420.2	53.061	49	23	0	63	111	57	105	4.25e-11	59.7
Msa1422890	AT2G46420.3	53.061	49	23	0	63	111	57	105	4.75e-11	59.7

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Find 35 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCAAAGTTGTACGATA+TGG	0.388439	tig0025492:-16287	Msa1422890:three_prime_UTR
AAATAGCTCATGAAATCCAA+AGG	0.624632	tig0025492:+17555	None:intergenic
AAATGATCAACAAAGTGAGA+TGG	0.584027	tig0025492:-16489	Msa1422890:CDS
AAGGCACTAGAAGAACATGC+AGG	0.583674	tig0025492:-17088	Msa1422890:CDS
ACAAACAAGGAAGAGGGTAT+TGG	0.476829	tig0025492:+17340	None:intergenic
ACCATTCTAATATAGCTATG+TGG	0.637830	tig0025492:+17309	None:intergenic
ACGTACGTGAACGAGCTTGG+AGG	0.547000	tig0025492:+16880	None:intergenic
AGACCTGTAAGAGTAACAAG+TGG	0.663372	tig0025492:+17058	None:intergenic
AGATCATGCATCTCTCTATC+AGG	0.411660	tig0025492:+17137	None:intergenic
AGGCACTAGAAGAACATGCA+GGG	0.629832	tig0025492:-17087	Msa1422890:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAGCTCATGAAATCCAA+AGG	+	tig0025492:16114-16133	None:intergenic	30.0%
TCCACATAGCTATATTAGAA+TGG	-	tig0025492:16356-16375	Msa1422890:three_prime_UTR	30.0%
ACCATTCTAATATAGCTATG+TGG	+	tig0025492:16360-16379	None:intergenic	30.0%
TTTCATGCATGGAAAAATGT+AGG	-	tig0025492:16500-16519	Msa1422890:CDS	30.0%
AAATGATCAACAAAGTGAGA+TGG	-	tig0025492:17177-17196	Msa1422890:CDS	30.0%
TATCATGGTGATTGATTAGA+TGG	-	tig0025492:17227-17246	Msa1422890:intron	30.0%
ATTATGGTCACAAAGTCTAA+TGG	+	tig0025492:17287-17306	None:intergenic	30.0%
AAAGTCAAAGTTGTACGATA+TGG	-	tig0025492:17379-17398	Msa1422890:CDS	30.0%
ATTGTAAATGAAGCTGTCAT+TGG	-	tig0025492:17545-17564	Msa1422890:five_prime_UTR	30.0%
AAATAGCTCATGAAATCCAA+AGG	+	tig0025492:16114-16133	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0025492	gene	16100	17588	16100	ID=Msa1422890;Name=Msa1422890
tig0025492	mRNA	16100	17588	16100	ID=Msa1422890-mRNA-1;Parent=Msa1422890;Name=Msa1422890-mRNA-1;_AED=0.23;_eAED=0.23;_QI=128\|0.33\|0.5\|1\|0.33\|0.5\|4\|384\|140
tig0025492	exon	16100	16537	16100	ID=Msa1422890-mRNA-1:exon:2952;Parent=Msa1422890-mRNA-1
tig0025492	exon	16882	16964	16882	ID=Msa1422890-mRNA-1:exon:2951;Parent=Msa1422890-mRNA-1
tig0025492	exon	17062	17197	17062	ID=Msa1422890-mRNA-1:exon:2950;Parent=Msa1422890-mRNA-1
tig0025492	exon	17311	17588	17311	ID=Msa1422890-mRNA-1:exon:2949;Parent=Msa1422890-mRNA-1
tig0025492	five_prime_UTR	17461	17588	17461	ID=Msa1422890-mRNA-1:five_prime_utr;Parent=Msa1422890-mRNA-1
tig0025492	CDS	17311	17460	17311	ID=Msa1422890-mRNA-1:cds;Parent=Msa1422890-mRNA-1
tig0025492	CDS	17062	17197	17062	ID=Msa1422890-mRNA-1:cds;Parent=Msa1422890-mRNA-1
tig0025492	CDS	16882	16964	16882	ID=Msa1422890-mRNA-1:cds;Parent=Msa1422890-mRNA-1
tig0025492	CDS	16484	16537	16484	ID=Msa1422890-mRNA-1:cds;Parent=Msa1422890-mRNA-1
tig0025492	three_prime_UTR	16100	16483	16100	ID=Msa1422890-mRNA-1:three_prime_utr;Parent=Msa1422890-mRNA-1

Gene Sequence

>Msa1422890

ATGTACTTTTTCTCTGTGTGCTTTCTTCTATTTCTTTCTATATTCTATTTGTTTTGTCCATTAGCAACAGAATTAAGCACAATGCATGATCACACTCACCAATACCCTCTTCCTTGTTTGTATTGTCATCCACATAGCTATATTAGAATGCTCCAAAATTTTCATGCATGGAAAAATGTAGGTTCAAACCTGATAGAGAGATGCATGATCTTTCACATGAGTCAAGACCAATGCATAAAGGCACTAGAAGAACATGCAGGGATTCAGCCACTTGTTACTCTTACAGTGTGGAGAGAGTTGCAAAAGGAGAATGAAGAGTTCTTTAGAGCATATTTGCAACAATTTATCCCTCCAAGCTCGTTCACGTACGTAGTCATTTTGAAAAGAAACATTGGAAATGATCAACAAAGTGAGATGGATTAA

Protein sequence

>Msa1422890

MYFFSVCFLLFLSIFYLFCPLATELSTMHDHTHQYPLPCLYCHPHSYIRMLQNFHAWKNVGSNLIERCMIFHMSQDQCIKALEEHAGIQPLVTLTVWRELQKENEEFFRAYLQQFIPPSSFTYVVILKRNIGNDQQSEMD*