Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0341040 | XP_003597878.1 | 92.793 | 333 | 7 | 1 | 1 | 316 | 1 | 333 | 0.0 | 630 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0341040 | sp|Q9UTE6|MAK16_SCHPO | 58.757 | 177 | 73 | 0 | 1 | 177 | 1 | 177 | 2.77e-71 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040690 | Msa0341040 | 0.809921 | 1.489676e-50 | -8.615850e-47 |
| Msa0042280 | Msa0341040 | 0.821141 | 4.728595e-53 | -8.615850e-47 |
| Msa0043660 | Msa0341040 | 0.842617 | 2.318458e-58 | -8.615850e-47 |
| Msa0047160 | Msa0341040 | 0.837074 | 6.440973e-57 | -8.615850e-47 |
| Msa0079820 | Msa0341040 | 0.819265 | 1.271670e-52 | -8.615850e-47 |
| Msa0094470 | Msa0341040 | 0.848181 | 7.216969e-60 | -8.615850e-47 |
| Msa0097600 | Msa0341040 | 0.807475 | 4.963125e-50 | -8.615850e-47 |
| Msa0137550 | Msa0341040 | 0.849156 | 3.874967e-60 | -8.615850e-47 |
| Msa0138920 | Msa0341040 | 0.800712 | 1.267201e-48 | -8.615850e-47 |
| Msa0165660 | Msa0341040 | 0.838016 | 3.693524e-57 | -8.615850e-47 |
| Msa0165950 | Msa0341040 | 0.800579 | 1.349033e-48 | -8.615850e-47 |
| Msa0167480 | Msa0341040 | 0.805436 | 1.335958e-49 | -8.615850e-47 |
| Msa0226470 | Msa0341040 | 0.901160 | 3.549077e-78 | -8.615850e-47 |
| Msa0231660 | Msa0341040 | 0.801366 | 9.313211e-49 | -8.615850e-47 |
| Msa0337650 | Msa0341040 | 0.809010 | 2.337192e-50 | -8.615850e-47 |
| Msa0341040 | Msa0366890 | 0.804317 | 2.289643e-49 | -8.615850e-47 |
| Msa0341040 | Msa0376690 | 0.810823 | 9.516449e-51 | -8.615850e-47 |
| Msa0341040 | Msa0458060 | 0.807875 | 4.082742e-50 | -8.615850e-47 |
| Msa0341040 | Msa0576940 | 0.806356 | 8.560990e-50 | -8.615850e-47 |
| Msa0341040 | Msa0612390 | 0.823457 | 1.371254e-53 | -8.615850e-47 |
| Msa0341040 | Msa0621950 | 0.803788 | 2.949722e-49 | -8.615850e-47 |
| Msa0341040 | Msa0691900 | 0.803917 | 2.772252e-49 | -8.615850e-47 |
| Msa0341040 | Msa0698060 | 0.811799 | 5.844804e-51 | -8.615850e-47 |
| Msa0341040 | Msa0715650 | 0.815077 | 1.112142e-51 | -8.615850e-47 |
| Msa0341040 | Msa0719420 | 0.812057 | 5.133006e-51 | -8.615850e-47 |
| Msa0341040 | Msa0738100 | 0.804535 | 2.062315e-49 | -8.615850e-47 |
| Msa0341040 | Msa0789680 | 0.813933 | 1.991805e-51 | -8.615850e-47 |
| Msa0341040 | Msa0798440 | 0.813443 | 2.552827e-51 | -8.615850e-47 |
| Msa0341040 | Msa0802410 | 0.806168 | 9.377941e-50 | -8.615850e-47 |
| Msa0341040 | Msa0970030 | 0.805302 | 1.425098e-49 | -8.615850e-47 |
| Msa0341040 | Msa1006840 | 0.806535 | 7.848900e-50 | -8.615850e-47 |
| Msa0341040 | Msa1019240 | 0.818288 | 2.119813e-52 | -8.615850e-47 |
| Msa0341040 | Msa1019260 | 0.809943 | 1.473951e-50 | -8.615850e-47 |
| Msa0341040 | Msa1043690 | 0.801663 | 8.096709e-49 | -8.615850e-47 |
| Msa0341040 | Msa1104140 | 0.844443 | 7.536536e-59 | -8.615850e-47 |
| Msa0341040 | Msa1104210 | 0.818110 | 2.325304e-52 | -8.615850e-47 |
| Msa0341040 | Msa1166860 | 0.809191 | 2.137840e-50 | -8.615850e-47 |
| Msa0341040 | Msa1166870 | 0.807680 | 4.489790e-50 | -8.615850e-47 |
| Msa0341040 | Msa1179950 | 0.805121 | 1.555329e-49 | -8.615850e-47 |
| Msa0341040 | Msa1265630 | 0.835505 | 1.613499e-56 | -8.615850e-47 |
| Msa0341040 | Msa1356440 | 0.807080 | 6.020577e-50 | -8.615850e-47 |
| Msa0341040 | Msa1366180 | 0.800606 | 1.331755e-48 | -8.615850e-47 |
| Msa0341040 | Msa1374120 | 0.800275 | 1.555616e-48 | -8.615850e-47 |
| Msa0341040 | Msa1394290 | 0.825323 | 4.991847e-54 | -8.615850e-47 |
| Msa0341040 | Msa1432700 | 0.802165 | 6.386194e-49 | -8.615850e-47 |
| Msa0341040 | Msa1433310 | 0.803620 | 3.195572e-49 | -8.615850e-47 |
| Msa0341040 | Msa1444310 | 0.800673 | 1.290591e-48 | -8.615850e-47 |
| Msa0341040 | Msa1457920 | 0.810419 | 1.163359e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0341040 | MtrunA17_Chr2g0332911 | 92.793 | 333 | 7 | 1 | 1 | 316 | 1 | 333 | 0.0 | 630 |
| Msa0341040 | MtrunA17_Chr4g0040651 | 93.636 | 110 | 7 | 0 | 1 | 110 | 1 | 110 | 2.54e-78 | 234 |
| Msa0341040 | MtrunA17_Chr4g0040641 | 54.545 | 220 | 49 | 5 | 115 | 315 | 1 | 188 | 2.39e-50 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0341040 | AT1G23280.1 | 64.000 | 225 | 49 | 1 | 1 | 225 | 1 | 193 | 7.64e-100 | 296 |
Find 92 sgRNAs with CRISPR-Local
Find 348 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTCAATCCTACTTTGTT+TGG | 0.214228 | 2_4:+62471031 | Msa0341040:three_prime_UTR |
| GAAGATGACATGGAAGATTT+TGG | 0.235599 | 2_4:+62469204 | Msa0341040:CDS |
| AAAATTGTAAAGGGCTAATT+AGG | 0.238259 | 2_4:+62465136 | None:intergenic |
| ACCTCATCGTGCTGCATCTT+TGG | 0.249173 | 2_4:-62465398 | None:intergenic |
| AATCCGCATCTGGGTCATTT+TGG | 0.284801 | 2_4:-62466986 | None:intergenic |
| ATCTCAATCCTACTTTGTTT+GGG | 0.295308 | 2_4:+62471032 | Msa0341040:three_prime_UTR |
| CAAATTCCAGTGACATTGTA+AGG | 0.318003 | 2_4:-62466181 | None:intergenic |
| GCAAATTGAGATGGAGATAG+TGG | 0.342543 | 2_4:+62468908 | Msa0341040:intron |
| TTCTGCATTAACAGATGTAT+TGG | 0.350434 | 2_4:+62466926 | Msa0341040:intron |
| TATGTGGATCATCAGGATTT+TGG | 0.355454 | 2_4:+62471080 | Msa0341040:three_prime_UTR |
| TCCTCATACGAATCCGCATC+TGG | 0.358008 | 2_4:-62466996 | None:intergenic |
| CTGGTTGCGAACCTACATTT+TGG | 0.361173 | 2_4:-62468938 | None:intergenic |
| TCTCTCTTTGTCTCTTTCCT+TGG | 0.372921 | 2_4:-62468576 | None:intergenic |
| GAAGTTGCTATATGAGAAAC+TGG | 0.383694 | 2_4:+62470860 | Msa0341040:three_prime_UTR |
| ATCTTGTGTACGAGAAGCTT+TGG | 0.393893 | 2_4:-62466949 | None:intergenic |
| TGCAGCACGATGAGGTTATA+TGG | 0.401960 | 2_4:+62465405 | Msa0341040:CDS |
| GCAGAAGTAGAATATGTAGA+AGG | 0.404197 | 2_4:+62469165 | Msa0341040:CDS |
| GAATGACAATGTAGCTTTGT+TGG | 0.407111 | 2_4:+62470992 | Msa0341040:three_prime_UTR |
| GTACTATAAAGTTCTTGATA+TGG | 0.407319 | 2_4:+62468989 | Msa0341040:CDS |
| CAGCATAAACTCCTTCTTCA+AGG | 0.415044 | 2_4:-62468756 | None:intergenic |
| ACTCTTTCCCACAAATCCTT+TGG | 0.416287 | 2_4:-62466770 | None:intergenic |
| TGTCACACCTACACGGTTGC+CGG | 0.423599 | 2_4:+62465240 | Msa0341040:five_prime_UTR |
| GTAAAATAAATTGACATAAA+CGG | 0.432572 | 2_4:-62470957 | None:intergenic |
| TAGCTAAAGGGCAAGAGCTT+CGG | 0.455266 | 2_4:-62466207 | None:intergenic |
| CTCATACGCCAAAGGATTTG+TGG | 0.458884 | 2_4:+62466762 | Msa0341040:CDS |
| TCTTCATCCTCTTCATCAGC+AGG | 0.463201 | 2_4:-62469023 | None:intergenic |
| ATTGTCTGTTGGTTACTGAT+AGG | 0.466499 | 2_4:+62470832 | Msa0341040:three_prime_UTR |
| TTTCAATAGTCTTCATGTAA+AGG | 0.467452 | 2_4:-62466736 | None:intergenic |
| TGCTTACGAAAGACAAAGAT+TGG | 0.476293 | 2_4:+62470797 | Msa0341040:CDS |
| AGCTTCAAAGAAACTTGAAA+AGG | 0.479994 | 2_4:+62470162 | Msa0341040:CDS |
| AAAGTAGGATTGAGATGCTC+TGG | 0.480020 | 2_4:-62471025 | None:intergenic |
| AGGAATTACGAACAGGCACT+TGG | 0.500734 | 2_4:+62466803 | Msa0341040:CDS |
| CCCAGATGCGGATTCGTATG+AGG | 0.505873 | 2_4:+62466995 | Msa0341040:CDS |
| CTAACTAAACGCCTTGAAGA+AGG | 0.509150 | 2_4:+62468745 | Msa0341040:CDS |
| TGGAGTCATCGACAAACATC+TGG | 0.509833 | 2_4:+62466823 | Msa0341040:CDS |
| GGAAACTTGCTTTGAAAACA+AGG | 0.511440 | 2_4:+62467016 | Msa0341040:CDS |
| TTTCTTTGATTTAGTATCAA+GGG | 0.513045 | 2_4:-62470188 | None:intergenic |
| ACAGTAGTTACATTGTCTGT+TGG | 0.515660 | 2_4:+62470821 | Msa0341040:exon |
| CATAGCGACTATTAGCTAAA+GGG | 0.516684 | 2_4:-62466219 | None:intergenic |
| GCATAGCGACTATTAGCTAA+AGG | 0.516741 | 2_4:-62466220 | None:intergenic |
| AGTGGAGATTCAGACTGATA+AGG | 0.526528 | 2_4:+62468801 | Msa0341040:CDS |
| AGTGCCTGTTCGTAATTCCT+AGG | 0.526835 | 2_4:-62466800 | None:intergenic |
| AAGAGAAGTGCGTACTGAAG+TGG | 0.528805 | 2_4:+62468783 | Msa0341040:CDS |
| TCATACGCCAAAGGATTTGT+GGG | 0.528939 | 2_4:+62466763 | Msa0341040:CDS |
| GCTTCAACCTGCTGATGAAG+AGG | 0.533182 | 2_4:+62469016 | Msa0341040:CDS |
| ACTTTATAGTACGCTTCAGT+AGG | 0.533622 | 2_4:-62468978 | None:intergenic |
| ACCTTTGTCTTCACGAATGG+TGG | 0.540955 | 2_4:-62466242 | None:intergenic |
| AGAAACCCTTACAATGTCAC+TGG | 0.541886 | 2_4:+62466175 | Msa0341040:CDS |
| CAAAATGTAGGTTCGCAACC+AGG | 0.546579 | 2_4:+62468939 | Msa0341040:CDS |
| GGGAAAGAGTTAAGCTGCCT+AGG | 0.548712 | 2_4:+62466783 | Msa0341040:CDS |
| GCTGCCTAGGAATTACGAAC+AGG | 0.552927 | 2_4:+62466796 | Msa0341040:CDS |
| TACCTGTGGAAGCTGTTCTC+CGG | 0.556203 | 2_4:-62465259 | None:intergenic |
| CCTCATACGAATCCGCATCT+GGG | 0.557645 | 2_4:-62466995 | None:intergenic |
| TGCTGATGAAGAGGATGAAG+AGG | 0.563447 | 2_4:+62469025 | Msa0341040:CDS |
| AGAATCTAGAAGAGAAGCAA+AGG | 0.564109 | 2_4:+62468596 | Msa0341040:CDS |
| TCACGATCCCCAAACAAAGT+AGG | 0.565053 | 2_4:-62471040 | None:intergenic |
| AGTACCTTTGTCTTCACGAA+TGG | 0.571730 | 2_4:-62466245 | None:intergenic |
| CTGTTCTCCGGCAACCGTGT+AGG | 0.572078 | 2_4:-62465247 | None:intergenic |
| GTAATCAGAGGAAAGCCAAA+AGG | 0.573419 | 2_4:+62470128 | Msa0341040:CDS |
| AGAAGGTTATGAACTTGAAG+AGG | 0.575452 | 2_4:+62469182 | Msa0341040:CDS |
| TGCCGGAGAACAGCTTCCAC+AGG | 0.580441 | 2_4:+62465257 | Msa0341040:five_prime_UTR |
| TGTGTTCGTAGAATTACGAC+GGG | 0.581825 | 2_4:+62466142 | Msa0341040:intron |
| GTGGGACGCCTCCAAAATGT+AGG | 0.582304 | 2_4:+62468927 | Msa0341040:CDS |
| ATTGTCATTCTTCCAAACAA+AGG | 0.584351 | 2_4:-62470979 | None:intergenic |
| AAATTCCAGTGACATTGTAA+GGG | 0.584410 | 2_4:-62466180 | None:intergenic |
| CTTCAAATTAGTTTGTACCC+TGG | 0.586065 | 2_4:+62470899 | Msa0341040:three_prime_UTR |
| TCTCAATCCTACTTTGTTTG+GGG | 0.587567 | 2_4:+62471033 | Msa0341040:three_prime_UTR |
| GAAAACGAAGGTCCTCATTG+AGG | 0.590120 | 2_4:+62470207 | Msa0341040:CDS |
| TTAAACGAAAACCTCGCACT+AGG | 0.592591 | 2_4:-62465184 | None:intergenic |
| TAATACTTAGCAAATTGAGA+TGG | 0.596304 | 2_4:+62468899 | Msa0341040:intron |
| ACTTGAAGAGGAAGATGACA+TGG | 0.603621 | 2_4:+62469194 | Msa0341040:CDS |
| CAAATTGAGATGGAGATAGT+GGG | 0.613797 | 2_4:+62468909 | Msa0341040:CDS |
| GGATAGTTGAATATTTCACC+TGG | 0.619836 | 2_4:-62468957 | None:intergenic |
| AACAAATAATAACACTACCA+AGG | 0.623666 | 2_4:+62468559 | Msa0341040:CDS |
| AAACTGAAGCACGTAATCAG+AGG | 0.629054 | 2_4:+62470116 | Msa0341040:CDS |
| TCCAAAGATGCAGCACGATG+AGG | 0.633592 | 2_4:+62465397 | Msa0341040:exon |
| TGAAAGAGCTCATACGCCAA+AGG | 0.633610 | 2_4:+62466754 | Msa0341040:CDS |
| TGTTGGTTACTGATAGGAGA+GGG | 0.635016 | 2_4:+62470838 | Msa0341040:three_prime_UTR |
| AGAAGCAAAGGCTCAAACAG+CGG | 0.638277 | 2_4:+62468608 | Msa0341040:CDS |
| AGTATTAAATTACCTCAATG+AGG | 0.639733 | 2_4:-62470219 | None:intergenic |
| TCGCCGCTGTCACACCTACA+CGG | 0.641398 | 2_4:+62465233 | Msa0341040:five_prime_UTR |
| AACAGCGGCTGCTATAGAGA+AGG | 0.646322 | 2_4:+62468623 | Msa0341040:CDS |
| TTGTGTTCGTAGAATTACGA+CGG | 0.646833 | 2_4:+62466141 | Msa0341040:intron |
| CGACTTCGTGACCTAGTGCG+AGG | 0.649087 | 2_4:+62465173 | Msa0341040:five_prime_UTR |
| CTGTTGGTTACTGATAGGAG+AGG | 0.655019 | 2_4:+62470837 | Msa0341040:three_prime_UTR |
| TGACCAAAATGACCCAGATG+CGG | 0.657520 | 2_4:+62466983 | Msa0341040:CDS |
| ATGATGCATAGCTCACCGCT+AGG | 0.658867 | 2_4:-62471142 | None:intergenic |
| GCCACCATTCGTGAAGACAA+AGG | 0.662439 | 2_4:+62466241 | Msa0341040:CDS |
| TACTAAATCAAAGAAAACGA+AGG | 0.700083 | 2_4:+62470195 | Msa0341040:CDS |
| GTGTAGGTGTGACAGCGGCG+AGG | 0.715171 | 2_4:-62465231 | None:intergenic |
| CAACCGTGTAGGTGTGACAG+CGG | 0.719630 | 2_4:-62465236 | None:intergenic |
| GTGTTCGTAGAATTACGACG+GGG | 0.805175 | 2_4:+62466143 | Msa0341040:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATATTTACATAGTTT+AGG | + | chr2_4:62466030-62466049 | Msa0341040:intron | 10.0% |
| !! | TATTATATTTACATAGTTTA+GGG | + | chr2_4:62466031-62466050 | Msa0341040:intron | 10.0% |
| !! | AGGAAATAAAAATATAAAAA+AGG | - | chr2_4:62467180-62467199 | None:intergenic | 10.0% |
| !!! | CTATATGAAAATATTTTATA+CGG | + | chr2_4:62467248-62467267 | Msa0341040:intron | 10.0% |
| !!! | TATATGAAAATATTTTATAC+GGG | + | chr2_4:62467249-62467268 | Msa0341040:intron | 10.0% |
| !!! | CAAATGTTATTTAAAATATT+GGG | - | chr2_4:62467607-62467626 | None:intergenic | 10.0% |
| !!! | ACAAATGTTATTTAAAATAT+TGG | - | chr2_4:62467608-62467627 | None:intergenic | 10.0% |
| !! | ATGAAATTTAATTAAAATAC+TGG | - | chr2_4:62468262-62468281 | None:intergenic | 10.0% |
| !!! | ATTTATTTAAAATCAGTAAT+AGG | - | chr2_4:62470424-62470443 | None:intergenic | 10.0% |
| !!! | AATTATTCTAATTTGAAACA+GGG | - | chr2_4:62465489-62465508 | None:intergenic | 15.0% |
| !!! | AAATTATTCTAATTTGAAAC+AGG | - | chr2_4:62465490-62465509 | None:intergenic | 15.0% |
| !! | AATATAATAAGTAATTCCTA+AGG | - | chr2_4:62466020-62466039 | None:intergenic | 15.0% |
| !! | TTTAAATTATTAGTGAAAAC+AGG | - | chr2_4:62467200-62467219 | None:intergenic | 15.0% |
| !!! | TATTTTCATATAGGAAAAAA+AGG | - | chr2_4:62467241-62467260 | None:intergenic | 15.0% |
| !!! | CGTATAAAATATTTTCATAT+AGG | - | chr2_4:62467250-62467269 | None:intergenic | 15.0% |
| !!! | TTGATTTTTGTTATCATTTT+TGG | + | chr2_4:62467414-62467433 | Msa0341040:intron | 15.0% |
| !!! | TTTTAAATAACATTTGTACT+AGG | + | chr2_4:62467611-62467630 | Msa0341040:intron | 15.0% |
| !!! | ATGAAAAAAGTTGTATATTT+TGG | - | chr2_4:62467665-62467684 | None:intergenic | 15.0% |
| !! | AAAAAAAATCAATCAGATAT+AGG | - | chr2_4:62467763-62467782 | None:intergenic | 15.0% |
| !!! | AATATTTTTTAAGAGTGTTT+GGG | - | chr2_4:62468022-62468041 | None:intergenic | 15.0% |
| !!! | TAATATTTTTTAAGAGTGTT+TGG | - | chr2_4:62468023-62468042 | None:intergenic | 15.0% |
| !! | AATCATATACAGATATATTT+GGG | - | chr2_4:62468387-62468406 | None:intergenic | 15.0% |
| !! | AAATCATATACAGATATATT+TGG | - | chr2_4:62468388-62468407 | None:intergenic | 15.0% |
| !! | GTACATTTATAATAGTATTA+GGG | - | chr2_4:62468413-62468432 | None:intergenic | 15.0% |
| !! | TGTACATTTATAATAGTATT+AGG | - | chr2_4:62468414-62468433 | None:intergenic | 15.0% |
| !! | AACATATAATTTAATATGCA+TGG | - | chr2_4:62468670-62468689 | None:intergenic | 15.0% |
| !! | TTATGATATCAATAATTGTA+GGG | - | chr2_4:62469403-62469422 | None:intergenic | 15.0% |
| !! | GTAAAATAAATTGACATAAA+CGG | - | chr2_4:62470960-62470979 | None:intergenic | 15.0% |
| !!! | TGAATGATTTTATATACCTT+AGG | + | chr2_4:62466001-62466020 | Msa0341040:intron | 20.0% |
| !! | AAAAAAATGGAAAAGAAAAG+AGG | - | chr2_4:62466123-62466142 | None:intergenic | 20.0% |
| !! | AGTAATCAAAATTTGAACTT+GGG | - | chr2_4:62466431-62466450 | None:intergenic | 20.0% |
| !! | AAGTAATCAAAATTTGAACT+TGG | - | chr2_4:62466432-62466451 | None:intergenic | 20.0% |
| !! | ATCAAAATTAATATCCAACA+GGG | - | chr2_4:62466561-62466580 | None:intergenic | 20.0% |
| !! | TATCAAAATTAATATCCAAC+AGG | - | chr2_4:62466562-62466581 | None:intergenic | 20.0% |
| !! | AAATTAAATAATATGCAGCT+TGG | - | chr2_4:62467116-62467135 | None:intergenic | 20.0% |
| !!! | ATTATTTAATTTCTGCATGT+TGG | + | chr2_4:62467124-62467143 | Msa0341040:intron | 20.0% |
| !! | CAATAACAAGTATAAAAGAT+GGG | - | chr2_4:62467291-62467310 | None:intergenic | 20.0% |
| !! | TCAATAACAAGTATAAAAGA+TGG | - | chr2_4:62467292-62467311 | None:intergenic | 20.0% |
| !! | TTATTGAACATGAAAAAAGT+GGG | + | chr2_4:62467305-62467324 | Msa0341040:intron | 20.0% |
| !!! | AACATTTTTTCAATTCAGTT+TGG | + | chr2_4:62467517-62467536 | Msa0341040:intron | 20.0% |
| !!! | ACATTTTTTCAATTCAGTTT+GGG | + | chr2_4:62467518-62467537 | Msa0341040:intron | 20.0% |
| !! | TATAATTACATCTAACAAGT+GGG | - | chr2_4:62467557-62467576 | None:intergenic | 20.0% |
| !! | CTGATAAGTAATTTAAATGA+AGG | + | chr2_4:62467686-62467705 | Msa0341040:intron | 20.0% |
| !! | TGTACCATATTTGTTTATTT+AGG | + | chr2_4:62467830-62467849 | Msa0341040:intron | 20.0% |
| !! | GATTCCTAAATAAACAAATA+TGG | - | chr2_4:62467837-62467856 | None:intergenic | 20.0% |
| !! | AGTCATGATATTAGTATATA+TGG | + | chr2_4:62467915-62467934 | Msa0341040:intron | 20.0% |
| !! | TTTAATTCAAATACTTGACA+AGG | - | chr2_4:62468093-62468112 | None:intergenic | 20.0% |
| !! | TCAGAAAGAAAAAAAAACAA+AGG | - | chr2_4:62468149-62468168 | None:intergenic | 20.0% |
| !! | AATTCACCCTAAAATTAAAT+GGG | - | chr2_4:62468232-62468251 | None:intergenic | 20.0% |
| !! | TAATTCACCCTAAAATTAAA+TGG | - | chr2_4:62468233-62468252 | None:intergenic | 20.0% |
| !! | TTTAATTAAAATACTGGACA+AGG | - | chr2_4:62468256-62468275 | None:intergenic | 20.0% |
| !!! | TGTGAATGTTATGATTTTAT+TGG | + | chr2_4:62468281-62468300 | Msa0341040:intron | 20.0% |
| !! | ACATATAATTTAACATGTGT+GGG | - | chr2_4:62468848-62468867 | None:intergenic | 20.0% |
| !! | AACATATAATTTAACATGTG+TGG | - | chr2_4:62468849-62468868 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTTCAAATTGAAC+AGG | + | chr2_4:62469140-62469159 | Msa0341040:intron | 20.0% |
| !! | CTTATGATATCAATAATTGT+AGG | - | chr2_4:62469404-62469423 | None:intergenic | 20.0% |
| !! | GATAAAGAAAAGTTTGTAAA+AGG | + | chr2_4:62469463-62469482 | Msa0341040:intron | 20.0% |
| !! | AAGCAATTCAAATGATAAAA+AGG | + | chr2_4:62469906-62469925 | Msa0341040:intron | 20.0% |
| !!! | TTTCTTTGATTTAGTATCAA+GGG | - | chr2_4:62470191-62470210 | None:intergenic | 20.0% |
| !!! | TTTTCTTTGATTTAGTATCA+AGG | - | chr2_4:62470192-62470211 | None:intergenic | 20.0% |
| !!! | AGTTTTTTGTAGTTTATACA+AGG | - | chr2_4:62470249-62470268 | None:intergenic | 20.0% |
| !!! | CAATTTATTTTACCTTTGTT+TGG | + | chr2_4:62470967-62470986 | Msa0341040:three_prime_UTR | 20.0% |
| !!! | TGATCAAATTTTGTTTTATG+TGG | + | chr2_4:62471064-62471083 | Msa0341040:three_prime_UTR | 20.0% |
| ! | AAGTGTAGAATTGATATACT+TGG | - | chr2_4:62465465-62465484 | None:intergenic | 25.0% |
| ! | GTTCTGATAAACAACTTATT+TGG | + | chr2_4:62465639-62465658 | Msa0341040:intron | 25.0% |
| !! | AAGTTTATGGACTAAATTGA+TGG | + | chr2_4:62466074-62466093 | Msa0341040:intron | 25.0% |
| ! | ATTCTACGAACACAAAAAAA+TGG | - | chr2_4:62466136-62466155 | None:intergenic | 25.0% |
| ! | TTAGATTTCAGCTAGAAATT+AGG | + | chr2_4:62466295-62466314 | Msa0341040:intron | 25.0% |
| ! | TTTCAATAGTCTTCATGTAA+AGG | - | chr2_4:62466739-62466758 | None:intergenic | 25.0% |
| ! | GAAAAAAAGGTAAAGCAATA+TGG | - | chr2_4:62467228-62467247 | None:intergenic | 25.0% |
| ! | GTTATTGAACATGAAAAAAG+TGG | + | chr2_4:62467304-62467323 | Msa0341040:intron | 25.0% |
| ! | TATTGAACATGAAAAAAGTG+GGG | + | chr2_4:62467306-62467325 | Msa0341040:intron | 25.0% |
| ! | TGATAACAAAAATCAAACAG+CGG | - | chr2_4:62467410-62467429 | None:intergenic | 25.0% |
| !!! | TAAAATGGATGTTTTAACAC+CGG | - | chr2_4:62467489-62467508 | None:intergenic | 25.0% |
| !! | GTGTTAAAACATCCATTTTA+GGG | + | chr2_4:62467489-62467508 | Msa0341040:intron | 25.0% |
| !! | TGTTAAAACATCCATTTTAG+GGG | + | chr2_4:62467490-62467509 | Msa0341040:intron | 25.0% |
| ! | AAATGTTAAATCCCCTAAAA+TGG | - | chr2_4:62467504-62467523 | None:intergenic | 25.0% |
| ! | GTATAATTACATCTAACAAG+TGG | - | chr2_4:62467558-62467577 | None:intergenic | 25.0% |
| ! | ATCAATCAGATATAGGAAAA+GGG | - | chr2_4:62467756-62467775 | None:intergenic | 25.0% |
| ! | AATCAATCAGATATAGGAAA+AGG | - | chr2_4:62467757-62467776 | None:intergenic | 25.0% |
| ! | AAAAGTAGACAAAAATATGC+AGG | - | chr2_4:62467810-62467829 | None:intergenic | 25.0% |
| ! | AATTTCGTTACTTGTAATAG+TGG | + | chr2_4:62467870-62467889 | Msa0341040:intron | 25.0% |
| ! | AGTTCATCCTAAAATTAGAT+GGG | - | chr2_4:62468069-62468088 | None:intergenic | 25.0% |
| ! | TAGTTCATCCTAAAATTAGA+TGG | - | chr2_4:62468070-62468089 | None:intergenic | 25.0% |
| !! | TATGAGTGTTACGATTTTAT+AGG | + | chr2_4:62468116-62468135 | Msa0341040:intron | 25.0% |
| !!! | TTTTCACCCCATTTAATTTT+AGG | + | chr2_4:62468222-62468241 | Msa0341040:intron | 25.0% |
| !!! | TTTCACCCCATTTAATTTTA+GGG | + | chr2_4:62468223-62468242 | Msa0341040:intron | 25.0% |
| ! | ATTCACCCTAAAATTAAATG+GGG | - | chr2_4:62468231-62468250 | None:intergenic | 25.0% |
| ! | AACAAATAATAACACTACCA+AGG | + | chr2_4:62468559-62468578 | Msa0341040:CDS | 25.0% |
| ! | TTAATATGCATGGTAACATT+AGG | - | chr2_4:62468660-62468679 | None:intergenic | 25.0% |
| ! | AATATTCAAAAGCAACAATG+AGG | - | chr2_4:62468704-62468723 | None:intergenic | 25.0% |
| !!! | GTTGCTTTTGAATATTACTT+AGG | + | chr2_4:62468708-62468727 | Msa0341040:intron | 25.0% |
| ! | ATTATTCAAAAGCAACAATG+AGG | - | chr2_4:62468883-62468902 | None:intergenic | 25.0% |
| ! | TAATACTTAGCAAATTGAGA+TGG | + | chr2_4:62468899-62468918 | Msa0341040:intron | 25.0% |
| ! | GTACTATAAAGTTCTTGATA+TGG | + | chr2_4:62468989-62469008 | Msa0341040:CDS | 25.0% |
| !! | TAATTCATTTTACTCTGTTG+TGG | + | chr2_4:62469059-62469078 | Msa0341040:intron | 25.0% |
| !! | AATGTTACCATTTTCATGAT+CGG | - | chr2_4:62469265-62469284 | None:intergenic | 25.0% |
| !!! | ACTCATGATTTTTGTTTGAA+TGG | - | chr2_4:62469318-62469337 | None:intergenic | 25.0% |
| !!! | TCATGAGTATTGAGAAAAAT+AGG | + | chr2_4:62469330-62469349 | Msa0341040:intron | 25.0% |
| !! | ACATAATATACGTTTTCCAA+TGG | + | chr2_4:62469428-62469447 | Msa0341040:intron | 25.0% |
| !! | TTGTAAAAGGTCTTATACTT+AGG | + | chr2_4:62469476-62469495 | Msa0341040:intron | 25.0% |
| !! | TGTAAAAGGTCTTATACTTA+GGG | + | chr2_4:62469477-62469496 | Msa0341040:intron | 25.0% |
| ! | TTGAAAATATGACAAGTAAC+TGG | - | chr2_4:62469786-62469805 | None:intergenic | 25.0% |
| ! | TACTAAATCAAAGAAAACGA+AGG | + | chr2_4:62470195-62470214 | Msa0341040:CDS | 25.0% |
| ! | AGTATTAAATTACCTCAATG+AGG | - | chr2_4:62470222-62470241 | None:intergenic | 25.0% |
| !!! | TCTGTTCTTTTAATTGCTAT+TGG | + | chr2_4:62470270-62470289 | Msa0341040:intron | 25.0% |
| !!! | CTGTTCTTTTAATTGCTATT+GGG | + | chr2_4:62470271-62470290 | Msa0341040:intron | 25.0% |
| ! | AGTGTTCTGTTATAATTTGA+AGG | + | chr2_4:62470396-62470415 | Msa0341040:intron | 25.0% |
| ! | AAATAAATGATGCTACAAAC+TGG | + | chr2_4:62470436-62470455 | Msa0341040:intron | 25.0% |
| ! | AATACATCAAGCAAAAGAAA+GGG | - | chr2_4:62470587-62470606 | None:intergenic | 25.0% |
| ! | AAAATCAAGATTGTGATATC+AGG | - | chr2_4:62470751-62470770 | None:intergenic | 25.0% |
| !! | TCTTGATTTTCATTGTTTTC+AGG | + | chr2_4:62470761-62470780 | Msa0341040:intron | 25.0% |
| ATGAACAGAACAATTAGACA+TGG | - | chr2_4:62465340-62465359 | None:intergenic | 30.0% | |
| TAAGTTGTTTATCAGAACAG+AGG | - | chr2_4:62465637-62465656 | None:intergenic | 30.0% | |
| GATAAGCTGAAAACAATCTA+CGG | + | chr2_4:62465857-62465876 | Msa0341040:intron | 30.0% | |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | - | chr2_4:62465907-62465926 | None:intergenic | 30.0% |
| ACATAGTTTAGGGACTAAAT+TGG | + | chr2_4:62466041-62466060 | Msa0341040:intron | 30.0% | |
| AAATTCCAGTGACATTGTAA+GGG | - | chr2_4:62466183-62466202 | None:intergenic | 30.0% | |
| TATATTTGTATCCTTGTGAG+TGG | + | chr2_4:62466634-62466653 | Msa0341040:intron | 30.0% | |
| ! | TATTACATTTTCCACTCACA+AGG | - | chr2_4:62466648-62466667 | None:intergenic | 30.0% |
| TGAGTGGAAAATGTAATAAG+TGG | + | chr2_4:62466650-62466669 | Msa0341040:intron | 30.0% | |
| ATACATCTGTTAATGCAGAA+AGG | - | chr2_4:62466926-62466945 | None:intergenic | 30.0% | |
| TTCTGCATTAACAGATGTAT+TGG | + | chr2_4:62466926-62466945 | Msa0341040:intron | 30.0% | |
| CTACAATCAATTACTCATGA+GGG | - | chr2_4:62467357-62467376 | None:intergenic | 30.0% | |
| ! | AACACAAAAAGATGTTTTGC+TGG | + | chr2_4:62467446-62467465 | Msa0341040:intron | 30.0% |
| GGTATTATCATCCTTAAATC+CGG | + | chr2_4:62467467-62467486 | Msa0341040:intron | 30.0% | |
| !!! | ATGTTTTAACACCGGATTTA+AGG | - | chr2_4:62467481-62467500 | None:intergenic | 30.0% |
| ! | GGTGTTAAAACATCCATTTT+AGG | + | chr2_4:62467488-62467507 | Msa0341040:intron | 30.0% |
| TTGGGTGAATATTAAAAGTG+AGG | - | chr2_4:62467589-62467608 | None:intergenic | 30.0% | |
| TAACATTTGTACTAGGCATT+TGG | + | chr2_4:62467618-62467637 | Msa0341040:intron | 30.0% | |
| ! | TGAAGGATTTGCTTAATCAA+AGG | + | chr2_4:62467703-62467722 | Msa0341040:intron | 30.0% |
| ! | GAAGGATTTGCTTAATCAAA+GGG | + | chr2_4:62467704-62467723 | Msa0341040:intron | 30.0% |
| TGGAATAATAAGACTCCTAA+AGG | + | chr2_4:62467935-62467954 | Msa0341040:intron | 30.0% | |
| ATACTACAAACAGATCCTTT+AGG | - | chr2_4:62467953-62467972 | None:intergenic | 30.0% | |
| TGTAGTATATTGAATCATCC+TGG | + | chr2_4:62467965-62467984 | Msa0341040:intron | 30.0% | |
| GTAGTATATTGAATCATCCT+GGG | + | chr2_4:62467966-62467985 | Msa0341040:intron | 30.0% | |
| ! | TTTTCACCCCATCTAATTTT+AGG | + | chr2_4:62468059-62468078 | Msa0341040:intron | 30.0% |
| GTTCATCCTAAAATTAGATG+GGG | - | chr2_4:62468068-62468087 | None:intergenic | 30.0% | |
| CATATTTATGATCTCACAGT+GGG | + | chr2_4:62468179-62468198 | Msa0341040:intron | 30.0% | |
| TAAATGGGGTGAAAATGATT+TGG | - | chr2_4:62468217-62468236 | None:intergenic | 30.0% | |
| GAAATTTACGATCTCACATT+CGG | + | chr2_4:62468351-62468370 | Msa0341040:intron | 30.0% | |
| ! | TCCTTGATCTACTATCTTTT+AGG | + | chr2_4:62468455-62468474 | Msa0341040:intron | 30.0% |
| ACCTAAAAGATAGTAGATCA+AGG | - | chr2_4:62468459-62468478 | None:intergenic | 30.0% | |
| !!! | ATGTTGGTATGTTGTTTTAC+AGG | + | chr2_4:62468535-62468554 | Msa0341040:intron | 30.0% |
| !!! | TGTTGGTATGTTGTTTTACA+GGG | + | chr2_4:62468536-62468555 | Msa0341040:intron | 30.0% |
| AAGTTCTTAGAGACTTAACT+TGG | + | chr2_4:62469097-62469116 | Msa0341040:intron | 30.0% | |
| !! | CATGATTTTTGTTTGAATGG+AGG | - | chr2_4:62469315-62469334 | None:intergenic | 30.0% |
| ! | TTTTCCAATGGTACTCTAAA+AGG | + | chr2_4:62469440-62469459 | Msa0341040:intron | 30.0% |
| ! | TTTCCAATGGTACTCTAAAA+GGG | + | chr2_4:62469441-62469460 | Msa0341040:intron | 30.0% |
| AGTATGTGTAACAGTGAAAT+AGG | + | chr2_4:62469557-62469576 | Msa0341040:intron | 30.0% | |
| TCTTCACTCATCAAGTAATT+TGG | + | chr2_4:62469604-62469623 | Msa0341040:intron | 30.0% | |
| GTTCAGAATACTTTGTATCT+TGG | - | chr2_4:62469646-62469665 | None:intergenic | 30.0% | |
| TATTCTGAACAAGATACACA+TGG | + | chr2_4:62469656-62469675 | Msa0341040:intron | 30.0% | |
| AAAATATGACAAGTAACTGG+AGG | - | chr2_4:62469783-62469802 | None:intergenic | 30.0% | |
| AGGTCTGGTAATATACATTT+GGG | - | chr2_4:62469950-62469969 | None:intergenic | 30.0% | |
| AAGGTCTGGTAATATACATT+TGG | - | chr2_4:62469951-62469970 | None:intergenic | 30.0% | |
| AGCTTCAAAGAAACTTGAAA+AGG | + | chr2_4:62470162-62470181 | Msa0341040:CDS | 30.0% | |
| ACAACTCAACCATTTCTTTA+GGG | + | chr2_4:62470334-62470353 | Msa0341040:intron | 30.0% | |
| ACACTGACAACTGTATATAT+AGG | - | chr2_4:62470381-62470400 | None:intergenic | 30.0% | |
| AAAAGAAAGGGAAGTCATAA+GGG | - | chr2_4:62470575-62470594 | None:intergenic | 30.0% | |
| CAATACATCAAGCAAAAGAA+AGG | - | chr2_4:62470588-62470607 | None:intergenic | 30.0% | |
| ! | CTTGATGTATTGCATAGTTT+TGG | + | chr2_4:62470596-62470615 | Msa0341040:intron | 30.0% |
| GCATAATCTGTTACAACTTT+CGG | - | chr2_4:62470649-62470668 | None:intergenic | 30.0% | |
| !! | ACACTTTGCTGTAATTTTGT+GGG | + | chr2_4:62470672-62470691 | Msa0341040:intron | 30.0% |
| TAAGAAATGCCTAAAACCTT+AGG | + | chr2_4:62470718-62470737 | Msa0341040:intron | 30.0% | |
| !! | TGATTTTCATTGTTTTCAGG+TGG | + | chr2_4:62470764-62470783 | Msa0341040:intron | 30.0% |
| !!! | TTCAGATCTTTTTTCTTCCA+GGG | - | chr2_4:62470919-62470938 | None:intergenic | 30.0% |
| !!! | TTTCAGATCTTTTTTCTTCC+AGG | - | chr2_4:62470920-62470939 | None:intergenic | 30.0% |
| ATTGTCATTCTTCCAAACAA+AGG | - | chr2_4:62470982-62471001 | None:intergenic | 30.0% | |
| ! | ATCTCAATCCTACTTTGTTT+GGG | + | chr2_4:62471032-62471051 | Msa0341040:three_prime_UTR | 30.0% |
| !!! | TTTGTTTTATGTGGATCATC+AGG | + | chr2_4:62471073-62471092 | Msa0341040:three_prime_UTR | 30.0% |
| ! | ACATGGCATTGAAAATTCGA+TGG | - | chr2_4:62465323-62465342 | None:intergenic | 35.0% |
| GTTATCTTGAAGAACTTGTG+AGG | + | chr2_4:62465835-62465854 | Msa0341040:intron | 35.0% | |
| TCAAATAAGCCAATCCAAAG+AGG | + | chr2_4:62465941-62465960 | Msa0341040:intron | 35.0% | |
| TGGAGAGAATGTGAAGTTTA+TGG | + | chr2_4:62466061-62466080 | Msa0341040:intron | 35.0% | |
| TTGTGTTCGTAGAATTACGA+CGG | + | chr2_4:62466141-62466160 | Msa0341040:intron | 35.0% | |
| CAAATTCCAGTGACATTGTA+AGG | - | chr2_4:62466184-62466203 | None:intergenic | 35.0% | |
| CATAGCGACTATTAGCTAAA+GGG | - | chr2_4:62466222-62466241 | None:intergenic | 35.0% | |
| ! | TGAAGGAAACTCCATGTTTT+TGG | + | chr2_4:62466345-62466364 | Msa0341040:intron | 35.0% |
| TGACATAGAGACCAAAAACA+TGG | - | chr2_4:62466359-62466378 | None:intergenic | 35.0% | |
| ATTCAAAGGAGTTAGAGAAG+AGG | + | chr2_4:62466403-62466422 | Msa0341040:intron | 35.0% | |
| TTCAAAGGAGTTAGAGAAGA+GGG | + | chr2_4:62466404-62466423 | Msa0341040:intron | 35.0% | |
| ! | ATATGTCCTTTTCTTCTCGT+GGG | - | chr2_4:62466533-62466552 | None:intergenic | 35.0% |
| ! | AATATGTCCTTTTCTTCTCG+TGG | - | chr2_4:62466534-62466553 | None:intergenic | 35.0% |
| GAGAAGAAAAGGACATATTG+AGG | + | chr2_4:62466535-62466554 | Msa0341040:intron | 35.0% | |
| ACAATTGCAATGTCTGTTGT+AGG | + | chr2_4:62466704-62466723 | Msa0341040:intron | 35.0% | |
| TCTGTTAATGCAGAAAGGTA+AGG | - | chr2_4:62466921-62466940 | None:intergenic | 35.0% | |
| !! | GGAAACTTGCTTTGAAAACA+AGG | + | chr2_4:62467016-62467035 | Msa0341040:CDS | 35.0% |
| AAGCTTCTTGCAGAATGATA+AGG | - | chr2_4:62467079-62467098 | None:intergenic | 35.0% | |
| CCTACAATCAATTACTCATG+AGG | - | chr2_4:62467358-62467377 | None:intergenic | 35.0% | |
| CCTCATGAGTAATTGATTGT+AGG | + | chr2_4:62467355-62467374 | Msa0341040:intron | 35.0% | |
| TAGATGGGGTGAAAATGATT+TGG | - | chr2_4:62468054-62468073 | None:intergenic | 35.0% | |
| CCACTGTGAGATCATAAATA+TGG | - | chr2_4:62468181-62468200 | None:intergenic | 35.0% | |
| CCATATTTATGATCTCACAG+TGG | + | chr2_4:62468178-62468197 | Msa0341040:intron | 35.0% | |
| ACATACCAACATGATCAAAC+AGG | - | chr2_4:62468527-62468546 | None:intergenic | 35.0% | |
| AGAATCTAGAAGAGAAGCAA+AGG | + | chr2_4:62468596-62468615 | Msa0341040:CDS | 35.0% | |
| TAACATGTGTGGGTAACATT+AGG | - | chr2_4:62468838-62468857 | None:intergenic | 35.0% | |
| CAAATTGAGATGGAGATAGT+GGG | + | chr2_4:62468909-62468928 | Msa0341040:CDS | 35.0% | |
| GGATAGTTGAATATTTCACC+TGG | - | chr2_4:62468960-62468979 | None:intergenic | 35.0% | |
| ACTTTATAGTACGCTTCAGT+AGG | - | chr2_4:62468981-62469000 | None:intergenic | 35.0% | |
| !! | TAACTTGGTAATGTTGACTC+TGG | + | chr2_4:62469112-62469131 | Msa0341040:intron | 35.0% |
| !! | AACTTGGTAATGTTGACTCT+GGG | + | chr2_4:62469113-62469132 | Msa0341040:intron | 35.0% |
| GCAGAAGTAGAATATGTAGA+AGG | + | chr2_4:62469165-62469184 | Msa0341040:CDS | 35.0% | |
| AGAAGGTTATGAACTTGAAG+AGG | + | chr2_4:62469182-62469201 | Msa0341040:CDS | 35.0% | |
| ! | GAAGATGACATGGAAGATTT+TGG | + | chr2_4:62469204-62469223 | Msa0341040:CDS | 35.0% |
| TTTGCAATTCATGAGTCACA+GGG | + | chr2_4:62469231-62469250 | Msa0341040:intron | 35.0% | |
| AATGATGCCGATCATGAAAA+TGG | + | chr2_4:62469255-62469274 | Msa0341040:intron | 35.0% | |
| TTCTTATAATAAGCGACGGA+GGG | - | chr2_4:62469292-62469311 | None:intergenic | 35.0% | |
| GAGGTTCTTATAATAAGCGA+CGG | - | chr2_4:62469296-62469315 | None:intergenic | 35.0% | |
| !!! | TATCCCTTTTAGAGTACCAT+TGG | - | chr2_4:62469447-62469466 | None:intergenic | 35.0% |
| TAGAAGCTTTGCAATATGCA+TGG | + | chr2_4:62469515-62469534 | Msa0341040:intron | 35.0% | |
| ACAAGATACACATGGTATGA+TGG | + | chr2_4:62469664-62469683 | Msa0341040:intron | 35.0% | |
| AGAATAGAAAGATCTGACTG+CGG | - | chr2_4:62469822-62469841 | None:intergenic | 35.0% | |
| TCTGGTAATATACATTTGGG+GGG | - | chr2_4:62469947-62469966 | None:intergenic | 35.0% | |
| GTCTGGTAATATACATTTGG+GGG | - | chr2_4:62469948-62469967 | None:intergenic | 35.0% | |
| GGTCTGGTAATATACATTTG+GGG | - | chr2_4:62469949-62469968 | None:intergenic | 35.0% | |
| GACAACTCAACCATTTCTTT+AGG | + | chr2_4:62470333-62470352 | Msa0341040:intron | 35.0% | |
| ! | ACCATTTCTTTAGGGAACTT+TGG | + | chr2_4:62470342-62470361 | Msa0341040:intron | 35.0% |
| ! | CCATTTCTTTAGGGAACTTT+GGG | + | chr2_4:62470343-62470362 | Msa0341040:intron | 35.0% |
| ACTGTTGAGATAGATGATGT+TGG | + | chr2_4:62470475-62470494 | Msa0341040:intron | 35.0% | |
| TTGTGGTCAACATACAAAAC+TGG | - | chr2_4:62470545-62470564 | None:intergenic | 35.0% | |
| CAAAAGAAAGGGAAGTCATA+AGG | - | chr2_4:62470576-62470595 | None:intergenic | 35.0% | |
| !!! | TGCATAGTTTTGGTTTTGTC+TGG | + | chr2_4:62470606-62470625 | Msa0341040:intron | 35.0% |
| CAAAATTACAGCAAAGTGTG+TGG | - | chr2_4:62470671-62470690 | None:intergenic | 35.0% | |
| !! | CACACTTTGCTGTAATTTTG+TGG | + | chr2_4:62470671-62470690 | Msa0341040:intron | 35.0% |
| CAAGATTGTGATATCAGGTT+TGG | - | chr2_4:62470746-62470765 | None:intergenic | 35.0% | |
| TGCTTACGAAAGACAAAGAT+TGG | + | chr2_4:62470797-62470816 | Msa0341040:CDS | 35.0% | |
| ACAGTAGTTACATTGTCTGT+TGG | + | chr2_4:62470821-62470840 | Msa0341040:exon | 35.0% | |
| ! | ATTGTCTGTTGGTTACTGAT+AGG | + | chr2_4:62470832-62470851 | Msa0341040:three_prime_UTR | 35.0% |
| GAAGTTGCTATATGAGAAAC+TGG | + | chr2_4:62470860-62470879 | Msa0341040:three_prime_UTR | 35.0% | |
| !! | CTTCAAATTAGTTTGTACCC+TGG | + | chr2_4:62470899-62470918 | Msa0341040:three_prime_UTR | 35.0% |
| !! | GAATGACAATGTAGCTTTGT+TGG | + | chr2_4:62470992-62471011 | Msa0341040:three_prime_UTR | 35.0% |
| CATCTCAATCCTACTTTGTT+TGG | + | chr2_4:62471031-62471050 | Msa0341040:three_prime_UTR | 35.0% | |
| ! | TCTCAATCCTACTTTGTTTG+GGG | + | chr2_4:62471033-62471052 | Msa0341040:three_prime_UTR | 35.0% |
| ! | TATGTGGATCATCAGGATTT+TGG | + | chr2_4:62471080-62471099 | Msa0341040:three_prime_UTR | 35.0% |
| !! | ATGTTTTATTGCACACCTAG+CGG | + | chr2_4:62471127-62471146 | Msa0341040:three_prime_UTR | 35.0% |
| TTAAACGAAAACCTCGCACT+AGG | - | chr2_4:62465187-62465206 | None:intergenic | 40.0% | |
| CAGAACAGAGGCTAAATCAA+TGG | - | chr2_4:62465625-62465644 | None:intergenic | 40.0% | |
| GTCTAATAGCCTCTTTGGAT+TGG | - | chr2_4:62465953-62465972 | None:intergenic | 40.0% | |
| ACCCTAGCGTCTTAATAGTA+GGG | + | chr2_4:62465971-62465990 | Msa0341040:intron | 40.0% | |
| TCCCTACTATTAAGACGCTA+GGG | - | chr2_4:62465975-62465994 | None:intergenic | 40.0% | |
| TGTGTTCGTAGAATTACGAC+GGG | + | chr2_4:62466142-62466161 | Msa0341040:intron | 40.0% | |
| AGAAACCCTTACAATGTCAC+TGG | + | chr2_4:62466175-62466194 | Msa0341040:CDS | 40.0% | |
| GCATAGCGACTATTAGCTAA+AGG | - | chr2_4:62466223-62466242 | None:intergenic | 40.0% | |
| AGTACCTTTGTCTTCACGAA+TGG | - | chr2_4:62466248-62466267 | None:intergenic | 40.0% | |
| GAAATGCTTGTGTGATGTGA+AGG | + | chr2_4:62466328-62466347 | Msa0341040:intron | 40.0% | |
| AGTTGAGCTCAGACATTCAA+AGG | + | chr2_4:62466389-62466408 | Msa0341040:intron | 40.0% | |
| !! | GAGGTGAAAGTTTGGTTCTT+TGG | + | chr2_4:62466503-62466522 | Msa0341040:intron | 40.0% |
| TCATACGCCAAAGGATTTGT+GGG | + | chr2_4:62466763-62466782 | Msa0341040:CDS | 40.0% | |
| ACTCTTTCCCACAAATCCTT+TGG | - | chr2_4:62466773-62466792 | None:intergenic | 40.0% | |
| ATCTTGTGTACGAGAAGCTT+TGG | - | chr2_4:62466952-62466971 | None:intergenic | 40.0% | |
| TGAACATGAAAAAAGTGGGG+TGG | + | chr2_4:62467309-62467328 | Msa0341040:intron | 40.0% | |
| CAATTACTCATGAGGGTTTG+AGG | - | chr2_4:62467350-62467369 | None:intergenic | 40.0% | |
| ACATCTAACAAGTGGGAGAA+CGG | - | chr2_4:62467550-62467569 | None:intergenic | 40.0% | |
| AGACAAAAATATGCAGGAGC+AGG | - | chr2_4:62467804-62467823 | None:intergenic | 40.0% | |
| CTACATCAGTACACTGCTTT+GGG | - | chr2_4:62467897-62467916 | None:intergenic | 40.0% | |
| ACTACATCAGTACACTGCTT+TGG | - | chr2_4:62467898-62467917 | None:intergenic | 40.0% | |
| TTGGGAGTTGAGATAGAAAG+AGG | - | chr2_4:62468004-62468023 | None:intergenic | 40.0% | |
| ! | ATGGGGTGAAAATGATTTGG+TGG | - | chr2_4:62468051-62468070 | None:intergenic | 40.0% |
| ! | ATGGGGTGAAAATGATTTGG+TGG | - | chr2_4:62468051-62468070 | None:intergenic | 40.0% |
| !!! | GATCAAACAGGCTGCTTTTA+TGG | - | chr2_4:62468515-62468534 | None:intergenic | 40.0% |
| TCTCTCTTTGTCTCTTTCCT+TGG | - | chr2_4:62468579-62468598 | None:intergenic | 40.0% | |
| CTAACTAAACGCCTTGAAGA+AGG | + | chr2_4:62468745-62468764 | Msa0341040:CDS | 40.0% | |
| CAGCATAAACTCCTTCTTCA+AGG | - | chr2_4:62468759-62468778 | None:intergenic | 40.0% | |
| AGTGGAGATTCAGACTGATA+AGG | + | chr2_4:62468801-62468820 | Msa0341040:CDS | 40.0% | |
| GCAAATTGAGATGGAGATAG+TGG | + | chr2_4:62468908-62468927 | Msa0341040:intron | 40.0% | |
| ACTTGAAGAGGAAGATGACA+TGG | + | chr2_4:62469194-62469213 | Msa0341040:CDS | 40.0% | |
| GTTTGCAATTCATGAGTCAC+AGG | + | chr2_4:62469230-62469249 | Msa0341040:intron | 40.0% | |
| GTTCTTATAATAAGCGACGG+AGG | - | chr2_4:62469293-62469312 | None:intergenic | 40.0% | |
| GTCTTATACTTAGGGACAGA+GGG | + | chr2_4:62469485-62469504 | Msa0341040:intron | 40.0% | |
| TGACTTCTCTTTCATTGAGC+TGG | + | chr2_4:62469701-62469720 | Msa0341040:intron | 40.0% | |
| TTCTCTTTCATTGAGCTGGT+GGG | + | chr2_4:62469705-62469724 | Msa0341040:intron | 40.0% | |
| ATATACATTTGGGGGGTAGA+GGG | - | chr2_4:62469940-62469959 | None:intergenic | 40.0% | |
| AATATACATTTGGGGGGTAG+AGG | - | chr2_4:62469941-62469960 | None:intergenic | 40.0% | |
| TTGACATCTACTAATGCAGC+TGG | + | chr2_4:62470076-62470095 | Msa0341040:intron | 40.0% | |
| AAACTGAAGCACGTAATCAG+AGG | + | chr2_4:62470116-62470135 | Msa0341040:CDS | 40.0% | |
| CCCAAAGTTCCCTAAAGAAA+TGG | - | chr2_4:62470346-62470365 | None:intergenic | 40.0% | |
| TGGTCAACATACAAAACTGG+AGG | - | chr2_4:62470542-62470561 | None:intergenic | 40.0% | |
| AAAGGGAAGTCATAAGGGAT+TGG | - | chr2_4:62470570-62470589 | None:intergenic | 40.0% | |
| !! | GGTTTGGAACCTAAGGTTTT+AGG | - | chr2_4:62470730-62470749 | None:intergenic | 40.0% |
| ! | GATATCAGGTTTGGAACCTA+AGG | - | chr2_4:62470737-62470756 | None:intergenic | 40.0% |
| ! | TGTTGGTTACTGATAGGAGA+GGG | + | chr2_4:62470838-62470857 | Msa0341040:three_prime_UTR | 40.0% |
| AAAGTAGGATTGAGATGCTC+TGG | - | chr2_4:62471028-62471047 | None:intergenic | 40.0% | |
| TGCAGCACGATGAGGTTATA+TGG | + | chr2_4:62465405-62465424 | Msa0341040:CDS | 45.0% | |
| CTAGGGTCTAATAGCCTCTT+TGG | - | chr2_4:62465958-62465977 | None:intergenic | 45.0% | |
| GACCCTAGCGTCTTAATAGT+AGG | + | chr2_4:62465970-62465989 | Msa0341040:intron | 45.0% | |
| GTCCCTACTATTAAGACGCT+AGG | - | chr2_4:62465976-62465995 | None:intergenic | 45.0% | |
| GTGTTCGTAGAATTACGACG+GGG | + | chr2_4:62466143-62466162 | Msa0341040:intron | 45.0% | |
| TAGCTAAAGGGCAAGAGCTT+CGG | - | chr2_4:62466210-62466229 | None:intergenic | 45.0% | |
| ACCTTTGTCTTCACGAATGG+TGG | - | chr2_4:62466245-62466264 | None:intergenic | 45.0% | |
| ! | TGCATACTTTTCCTGAGCTG+AGG | + | chr2_4:62466484-62466503 | Msa0341040:intron | 45.0% |
| TGAAAGAGCTCATACGCCAA+AGG | + | chr2_4:62466754-62466773 | Msa0341040:CDS | 45.0% | |
| CTCATACGCCAAAGGATTTG+TGG | + | chr2_4:62466762-62466781 | Msa0341040:CDS | 45.0% | |
| AGTGCCTGTTCGTAATTCCT+AGG | - | chr2_4:62466803-62466822 | None:intergenic | 45.0% | |
| AGGAATTACGAACAGGCACT+TGG | + | chr2_4:62466803-62466822 | Msa0341040:CDS | 45.0% | |
| TGGAGTCATCGACAAACATC+TGG | + | chr2_4:62466823-62466842 | Msa0341040:CDS | 45.0% | |
| TGACCAAAATGACCCAGATG+CGG | + | chr2_4:62466983-62467002 | Msa0341040:CDS | 45.0% | |
| ! | AATCCGCATCTGGGTCATTT+TGG | - | chr2_4:62466989-62467008 | None:intergenic | 45.0% |
| ! | ACTCATGAGGGTTTGAGGTT+AGG | - | chr2_4:62467345-62467364 | None:intergenic | 45.0% |
| ! | AGAGGCATGCTTAAAAACCC+AGG | - | chr2_4:62467986-62468005 | None:intergenic | 45.0% |
| AGCAGCCTGTTTGATCATGT+TGG | + | chr2_4:62468519-62468538 | Msa0341040:intron | 45.0% | |
| AGAAGCAAAGGCTCAAACAG+CGG | + | chr2_4:62468608-62468627 | Msa0341040:CDS | 45.0% | |
| ! | AAGAGAAGTGCGTACTGAAG+TGG | + | chr2_4:62468783-62468802 | Msa0341040:CDS | 45.0% |
| ! | GTTGCGAACCTACATTTTGG+AGG | - | chr2_4:62468938-62468957 | None:intergenic | 45.0% |
| ! | CTGGTTGCGAACCTACATTT+TGG | - | chr2_4:62468941-62468960 | None:intergenic | 45.0% |
| CAAAATGTAGGTTCGCAACC+AGG | + | chr2_4:62468939-62468958 | Msa0341040:CDS | 45.0% | |
| TCTTCATCCTCTTCATCAGC+AGG | - | chr2_4:62469026-62469045 | None:intergenic | 45.0% | |
| TGCTGATGAAGAGGATGAAG+AGG | + | chr2_4:62469025-62469044 | Msa0341040:CDS | 45.0% | |
| ! | GGTCTTATACTTAGGGACAG+AGG | + | chr2_4:62469484-62469503 | Msa0341040:intron | 45.0% |
| CTTCTCTTTCATTGAGCTGG+TGG | + | chr2_4:62469704-62469723 | Msa0341040:intron | 45.0% | |
| TATACATTTGGGGGGTAGAG+GGG | - | chr2_4:62469939-62469958 | None:intergenic | 45.0% | |
| ! | AAAGCAGCACTCTAAAGGTC+TGG | - | chr2_4:62469965-62469984 | None:intergenic | 45.0% |
| TGCAGAAAGCAGCACTCTAA+AGG | - | chr2_4:62469970-62469989 | None:intergenic | 45.0% | |
| !! | TTAGAGTGCTGCTTTCTGCA+TGG | + | chr2_4:62469970-62469989 | Msa0341040:intron | 45.0% |
| GAAAACGAAGGTCCTCATTG+AGG | + | chr2_4:62470207-62470226 | Msa0341040:CDS | 45.0% | |
| !! | GTCATAAGGGATTGGCTTTG+TGG | - | chr2_4:62470562-62470581 | None:intergenic | 45.0% |
| ! | CTGTTGGTTACTGATAGGAG+AGG | + | chr2_4:62470837-62470856 | Msa0341040:three_prime_UTR | 45.0% |
| TCACGATCCCCAAACAAAGT+AGG | - | chr2_4:62471043-62471062 | None:intergenic | 45.0% | |
| !! | AAATATAAAATTATTACATA+AGG | - | chr2_4:62466621-62466640 | None:intergenic | 5.0% |
| TACCTGTGGAAGCTGTTCTC+CGG | - | chr2_4:62465262-62465281 | None:intergenic | 50.0% | |
| ! | GCAGCTTGTTTCGTTACCTG+TGG | - | chr2_4:62465276-62465295 | None:intergenic | 50.0% |
| TCCAAAGATGCAGCACGATG+AGG | + | chr2_4:62465397-62465416 | Msa0341040:exon | 50.0% | |
| ACCTCATCGTGCTGCATCTT+TGG | - | chr2_4:62465401-62465420 | None:intergenic | 50.0% | |
| GCCACCATTCGTGAAGACAA+AGG | + | chr2_4:62466241-62466260 | Msa0341040:CDS | 50.0% | |
| CCAAACTTTCACCTCAGCTC+AGG | - | chr2_4:62466498-62466517 | None:intergenic | 50.0% | |
| CCTGAGCTGAGGTGAAAGTT+TGG | + | chr2_4:62466495-62466514 | Msa0341040:intron | 50.0% | |
| GGAGAACCCACGAGAAGAAA+AGG | + | chr2_4:62466524-62466543 | Msa0341040:intron | 50.0% | |
| AGGACATATTGAGGCCCTGT+TGG | + | chr2_4:62466544-62466563 | Msa0341040:intron | 50.0% | |
| GGGAAAGAGTTAAGCTGCCT+AGG | + | chr2_4:62466783-62466802 | Msa0341040:CDS | 50.0% | |
| GCTGCCTAGGAATTACGAAC+AGG | + | chr2_4:62466796-62466815 | Msa0341040:CDS | 50.0% | |
| CCTCATACGAATCCGCATCT+GGG | - | chr2_4:62466998-62467017 | None:intergenic | 50.0% | |
| TCCTCATACGAATCCGCATC+TGG | - | chr2_4:62466999-62467018 | None:intergenic | 50.0% | |
| TGCAGGAGCAGGATAGACTA+TGG | - | chr2_4:62467793-62467812 | None:intergenic | 50.0% | |
| AACAGCGGCTGCTATAGAGA+AGG | + | chr2_4:62468623-62468642 | Msa0341040:CDS | 50.0% | |
| GCTTCAACCTGCTGATGAAG+AGG | + | chr2_4:62469016-62469035 | Msa0341040:CDS | 50.0% | |
| ! | GCTGCTTTCTGCATGGCTAA+CGG | + | chr2_4:62469977-62469996 | Msa0341040:intron | 50.0% |
| CTGCTTTCTGCATGGCTAAC+GGG | + | chr2_4:62469978-62469997 | Msa0341040:intron | 50.0% | |
| ATGATGCATAGCTCACCGCT+AGG | - | chr2_4:62471145-62471164 | None:intergenic | 50.0% | |
| CAACCGTGTAGGTGTGACAG+CGG | - | chr2_4:62465239-62465258 | None:intergenic | 55.0% | |
| TGTCACACCTACACGGTTGC+CGG | + | chr2_4:62465240-62465259 | Msa0341040:five_prime_UTR | 55.0% | |
| CCCAGATGCGGATTCGTATG+AGG | + | chr2_4:62466995-62467014 | Msa0341040:CDS | 55.0% | |
| GTGGGACGCCTCCAAAATGT+AGG | + | chr2_4:62468927-62468946 | Msa0341040:CDS | 55.0% | |
| ! | TCTGCATGGCTAACGGGCAA+TGG | + | chr2_4:62469984-62470003 | Msa0341040:intron | 55.0% |
| CGACTTCGTGACCTAGTGCG+AGG | + | chr2_4:62465173-62465192 | Msa0341040:five_prime_UTR | 60.0% | |
| TCGCCGCTGTCACACCTACA+CGG | + | chr2_4:62465233-62465252 | Msa0341040:five_prime_UTR | 60.0% | |
| CTGTTCTCCGGCAACCGTGT+AGG | - | chr2_4:62465250-62465269 | None:intergenic | 60.0% | |
| TGCCGGAGAACAGCTTCCAC+AGG | + | chr2_4:62465257-62465276 | Msa0341040:five_prime_UTR | 60.0% | |
| GTGTAGGTGTGACAGCGGCG+AGG | - | chr2_4:62465234-62465253 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 62465148 | 62471191 | 62465148 | ID=Msa0341040;Name=Msa0341040 |
| chr2_4 | mRNA | 62465148 | 62471191 | 62465148 | ID=Msa0341040-mRNA-1;Parent=Msa0341040;Name=Msa0341040-mRNA-1;_AED=0.13;_eAED=0.13;_QI=177|0.9|0.90|1|0.9|0.81|11|364|316 |
| chr2_4 | exon | 62465148 | 62465278 | 62465148 | ID=Msa0341040-mRNA-1:exon:19858;Parent=Msa0341040-mRNA-1 |
| chr2_4 | exon | 62465358 | 62465465 | 62465358 | ID=Msa0341040-mRNA-1:exon:19859;Parent=Msa0341040-mRNA-1 |
| chr2_4 | exon | 62466153 | 62466262 | 62466153 | ID=Msa0341040-mRNA-1:exon:19860;Parent=Msa0341040-mRNA-1 |
| chr2_4 | exon | 62466726 | 62466844 | 62466726 | ID=Msa0341040-mRNA-1:exon:19861;Parent=Msa0341040-mRNA-1 |
| chr2_4 | exon | 62466940 | 62467037 | 62466940 | ID=Msa0341040-mRNA-1:exon:19862;Parent=Msa0341040-mRNA-1 |
| chr2_4 | exon | 62468557 | 62468644 | 62468557 | ID=Msa0341040-mRNA-1:exon:19863;Parent=Msa0341040-mRNA-1 |
| chr2_4 | exon | 62468730 | 62468822 | 62468730 | ID=Msa0341040-mRNA-1:exon:19864;Parent=Msa0341040-mRNA-1 |
| chr2_4 | exon | 62468909 | 62469046 | 62468909 | ID=Msa0341040-mRNA-1:exon:19865;Parent=Msa0341040-mRNA-1 |
| chr2_4 | exon | 62469162 | 62469225 | 62469162 | ID=Msa0341040-mRNA-1:exon:19866;Parent=Msa0341040-mRNA-1 |
| chr2_4 | exon | 62470095 | 62470228 | 62470095 | ID=Msa0341040-mRNA-1:exon:19867;Parent=Msa0341040-mRNA-1 |
| chr2_4 | exon | 62470783 | 62471191 | 62470783 | ID=Msa0341040-mRNA-1:exon:19868;Parent=Msa0341040-mRNA-1 |
| chr2_4 | five_prime_UTR | 62465148 | 62465278 | 62465148 | ID=Msa0341040-mRNA-1:five_prime_utr;Parent=Msa0341040-mRNA-1 |
| chr2_4 | five_prime_UTR | 62465358 | 62465403 | 62465358 | ID=Msa0341040-mRNA-1:five_prime_utr;Parent=Msa0341040-mRNA-1 |
| chr2_4 | CDS | 62465404 | 62465465 | 62465404 | ID=Msa0341040-mRNA-1:cds;Parent=Msa0341040-mRNA-1 |
| chr2_4 | CDS | 62466153 | 62466262 | 62466153 | ID=Msa0341040-mRNA-1:cds;Parent=Msa0341040-mRNA-1 |
| chr2_4 | CDS | 62466726 | 62466844 | 62466726 | ID=Msa0341040-mRNA-1:cds;Parent=Msa0341040-mRNA-1 |
| chr2_4 | CDS | 62466940 | 62467037 | 62466940 | ID=Msa0341040-mRNA-1:cds;Parent=Msa0341040-mRNA-1 |
| chr2_4 | CDS | 62468557 | 62468644 | 62468557 | ID=Msa0341040-mRNA-1:cds;Parent=Msa0341040-mRNA-1 |
| chr2_4 | CDS | 62468730 | 62468822 | 62468730 | ID=Msa0341040-mRNA-1:cds;Parent=Msa0341040-mRNA-1 |
| chr2_4 | CDS | 62468909 | 62469046 | 62468909 | ID=Msa0341040-mRNA-1:cds;Parent=Msa0341040-mRNA-1 |
| chr2_4 | CDS | 62469162 | 62469225 | 62469162 | ID=Msa0341040-mRNA-1:cds;Parent=Msa0341040-mRNA-1 |
| chr2_4 | CDS | 62470095 | 62470228 | 62470095 | ID=Msa0341040-mRNA-1:cds;Parent=Msa0341040-mRNA-1 |
| chr2_4 | CDS | 62470783 | 62470827 | 62470783 | ID=Msa0341040-mRNA-1:cds;Parent=Msa0341040-mRNA-1 |
| chr2_4 | three_prime_UTR | 62470828 | 62471191 | 62470828 | ID=Msa0341040-mRNA-1:three_prime_utr;Parent=Msa0341040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
