AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0559690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0559690 MtrunA17_Chr4g0050641 95.413 436 19 1 35 470 7 441 0.0 814
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0559690 AT3G09580.1 65.690 478 153 5 1 469 1 476 0.0 603

Find 110 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATGGAGCTTTGGTTTC+TGG 0.114822 4_1:+58848691 Msa0559690:CDS
GATTATAATGACGCCGGTTT+TGG 0.217992 4_1:-58847471 None:intergenic
GGATTGAATTTGAATGGTTT+TGG 0.265688 4_1:-58847407 None:intergenic
GGAAGCATTTGAGGACTTAT+AGG 0.268361 4_1:+58848563 Msa0559690:CDS
CTAGAAGTTGTTTCGAGTTC+GGG 0.279886 4_1:-58847986 None:intergenic
TTGACCTCAGCTACATTTGA+TGG 0.284242 4_1:+58848676 Msa0559690:CDS
AACCTCGCCGCTAACTGTTC+TGG 0.286582 4_1:-58848082 None:intergenic
GGCAAGTTGGGAGGAGCATT+TGG 0.286950 4_1:-58847429 None:intergenic
GGGTTGGTTTGGAGATAAAA+TGG 0.298136 4_1:+58848531 Msa0559690:CDS
TAAGGTGGTTCAAGAACTTT+CGG 0.316232 4_1:+58848510 Msa0559690:CDS
TGGAACCGATAGGGTTAGTT+AGG 0.316739 4_1:-58847790 None:intergenic
AGCTACATTTGATGGAGCTT+TGG 0.321131 4_1:+58848684 Msa0559690:CDS
CAACCTCACACGCGGCGAAT+TGG 0.324674 4_1:-58848161 None:intergenic
TTTGGTTAAATTATTATTAC+CGG 0.331012 4_1:+58848243 Msa0559690:CDS
AAGGTGGTTCAAGAACTTTC+GGG 0.337683 4_1:+58848511 Msa0559690:CDS
TTGGTTTCAGTATCATTGAT+TGG 0.342124 4_1:+58848451 Msa0559690:CDS
TCTAGAAGTTGTTTCGAGTT+CGG 0.358023 4_1:-58847987 None:intergenic
GAAGAAGATGGAGCGGTTTG+TGG 0.359878 4_1:-58847375 None:intergenic
CATTTGGGATTGAATTTGAA+TGG 0.363376 4_1:-58847413 None:intergenic
CAAGAACTTTCGGGTTGGTT+TGG 0.368642 4_1:+58848520 Msa0559690:CDS
GATCAGCGACGGTGTGGAAT+TGG 0.372588 4_1:-58847736 None:intergenic
TGCCGTTGAAGAACCTGCTT+TGG 0.379343 4_1:+58848225 Msa0559690:CDS
AGCAGCTAAGCCGGCGAGGC+CGG 0.382512 4_1:-58847498 None:intergenic
ATCTTCAAGTGTCTCGCTCT+CGG 0.393794 4_1:+58848022 Msa0559690:CDS
ATAAACCCGGTTCAATTGTT+GGG 0.395707 4_1:-58848636 None:intergenic
TGGAGAAGAAGTGAAGAAGA+TGG 0.397924 4_1:-58847387 None:intergenic
GATAAGCGGTGATGAAGATT+TGG 0.402664 4_1:-58847634 None:intergenic
GCAAGTTGGGAGGAGCATTT+GGG 0.408251 4_1:-58847428 None:intergenic
TTCGTAGGTGGACACTGATT+AGG 0.415330 4_1:-58848601 None:intergenic
TATAAACCCGGTTCAATTGT+TGG 0.416106 4_1:-58848637 None:intergenic
TCACGGACCGGGATTTGATC+CGG 0.419244 4_1:-58848331 None:intergenic
ATCATTGATTGGGTTATTTG+AGG 0.423123 4_1:+58848462 Msa0559690:CDS
GATGAGTAATTTATCGAAGA+TGG 0.424531 4_1:-58847810 None:intergenic
TGGTTTCAGTATCATTGATT+GGG 0.425020 4_1:+58848452 Msa0559690:CDS
TTGTTTGGTGGTGCATATGA+TGG 0.430727 4_1:-58848424 None:intergenic
TAAAAGAATGGAAGCATTTG+AGG 0.433362 4_1:+58848554 Msa0559690:CDS
AATAATAATTTAACCAAAGC+AGG 0.435657 4_1:-58848238 None:intergenic
ACTGAAACCAATGCCTTGTT+TGG 0.439459 4_1:-58848439 None:intergenic
AAAACCGGCGTCATTATAAT+CGG 0.443912 4_1:+58847473 Msa0559690:CDS
ATAATCGGCGCCGGCCTCGC+CGG 0.451537 4_1:+58847488 Msa0559690:CDS
TTAAATGATAGAGCCTTCAT+TGG 0.454783 4_1:+58848736 Msa0559690:CDS
AAACAAACCGTACTCCGAAC+CGG 0.454922 4_1:-58848292 None:intergenic
ATGGGTTGCAGCAGCTAAGC+CGG 0.461071 4_1:-58847507 None:intergenic
AAGATGGAGCGGTTTGTGGA+AGG 0.461867 4_1:-58847371 None:intergenic
TGATGATGAGTTAGTGCTTA+AGG 0.464469 4_1:+58848492 Msa0559690:CDS
CCCTCCTCACTCCCCAAAAC+CGG 0.465238 4_1:+58847458 Msa0559690:CDS
AGATGGAGCGGTTTGTGGAA+GGG 0.468158 4_1:-58847370 None:intergenic
GGTTTAAGGATTGGTAATTG+AGG 0.468393 4_1:-58847673 None:intergenic
GAGATAAAATGGTAAAAGAA+TGG 0.472262 4_1:+58848542 Msa0559690:CDS
CTCATCGGAACCACCAGAAT+CGG 0.475119 4_1:+58847827 Msa0559690:CDS
ATGATTCGAGGAGGAGGAAA+GGG 0.481642 4_1:-58847547 None:intergenic
GATGATTCGAGGAGGAGGAA+AGG 0.494340 4_1:-58847548 None:intergenic
CGGGATTTGATCCGGGTTCG+CGG 0.510981 4_1:-58848323 None:intergenic
GACGCGACCACCGACGGCGT+TGG 0.512717 4_1:-58847570 None:intergenic
ATGGAGCTTTGGTTTCTGGT+AGG 0.513614 4_1:+58848695 Msa0559690:CDS
TGGAGCGGTTTGTGGAAGGG+AGG 0.514521 4_1:-58847367 None:intergenic
GGAGCGGTTTGTGGAAGGGA+GGG 0.524782 4_1:-58847366 None:intergenic
AACAGAACTGGATCACGGAC+CGG 0.529245 4_1:-58848343 None:intergenic
ACAGAACTGGATCACGGACC+GGG 0.531237 4_1:-58848342 None:intergenic
CACGGACCGGGATTTGATCC+GGG 0.532950 4_1:-58848330 None:intergenic
TCTCGGCGAAAATACTCTTC+CGG 0.537560 4_1:+58848039 Msa0559690:CDS
AAGAAGTGAAGAAGATGGAG+CGG 0.538503 4_1:-58847382 None:intergenic
GGAACCGATAGGGTTAGTTA+GGG 0.540536 4_1:-58847789 None:intergenic
GAAACCAATGCCTTGTTTGG+TGG 0.542262 4_1:-58848436 None:intergenic
CGCGAACCCGGATCAAATCC+CGG 0.551217 4_1:+58848324 Msa0559690:CDS
ATGAAGCAATTAGCCAATGA+AGG 0.551327 4_1:-58848749 None:intergenic
ATCTTCGATAAATTACTCAT+CGG 0.559784 4_1:+58847812 Msa0559690:CDS
GGTGCGGACGCGACCACCGA+CGG 0.559991 4_1:-58847576 None:intergenic
GTCCGCACCGACATTGTCGA+CGG 0.561381 4_1:+58847590 Msa0559690:CDS
AGCGATTCCAGAACAGTTAG+CGG 0.561707 4_1:+58848075 Msa0559690:CDS
GAATCATCCAACGCCGTCGG+TGG 0.562334 4_1:+58847563 Msa0559690:CDS
ATCATATGCACCACCAAACA+AGG 0.563468 4_1:+58848426 Msa0559690:CDS
TGCACCACCAAACAAGGCAT+TGG 0.563916 4_1:+58848432 Msa0559690:CDS
CGTTGGATGATTCGAGGAGG+AGG 0.564310 4_1:-58847553 None:intergenic
TATCGAAGATGGAACCGATA+GGG 0.569411 4_1:-58847799 None:intergenic
GGCGTCATTATAATCGGCGC+CGG 0.571907 4_1:+58847479 Msa0559690:CDS
AACCAAAGCAGGTTCTTCAA+CGG 0.572199 4_1:-58848227 None:intergenic
TGCGGTAAGAGTTTGTTCGT+CGG 0.575993 4_1:-58847864 None:intergenic
ATCGCTGAGATACCGTTCGC+CGG 0.576771 4_1:-58848058 None:intergenic
CGACGGCGTTGGATGATTCG+AGG 0.576838 4_1:-58847559 None:intergenic
CTCGAATCATCCAACGCCGT+CGG 0.578935 4_1:+58847560 Msa0559690:CDS
TTGGTTAAATTATTATTACC+GGG 0.580306 4_1:+58848244 Msa0559690:CDS
AGATTTGGAAGCCACGGTCA+AGG 0.586167 4_1:-58847619 None:intergenic
CCGCGTGTGAGGTTGCAAAA+CGG 0.593377 4_1:+58848169 Msa0559690:CDS
GCTCCAATTCGCCGCGTGTG+AGG 0.600636 4_1:+58848158 Msa0559690:CDS
TGATGAAGATTTGGAAGCCA+CGG 0.605471 4_1:-58847625 None:intergenic
GAGGAAGCCGTCGACAATGT+CGG 0.609084 4_1:-58847597 None:intergenic
GGTGCTAAAATCTTCTACAA+CGG 0.611207 4_1:+58847713 Msa0559690:CDS
AGCTCCATCAAATGTAGCTG+AGG 0.611870 4_1:-58848680 None:intergenic
TTATCGAAGATGGAACCGAT+AGG 0.611986 4_1:-58847800 None:intergenic
AAATCCCTAACTAACCCTAT+CGG 0.614614 4_1:+58847785 Msa0559690:CDS
TGTGAGGACACCGATTCTGG+TGG 0.616357 4_1:-58847837 None:intergenic
GACGGCTTCCTCCTTGACCG+TGG 0.618515 4_1:+58847608 Msa0559690:CDS
TGGTTCAAGAACTTTCGGGT+TGG 0.622317 4_1:+58848515 Msa0559690:CDS
ATTGGAGCCGTCAAAATCAA+CGG 0.640272 4_1:-58848143 None:intergenic
GAACCGGGTTTATATTTGTG+TGG 0.640779 4_1:+58848646 Msa0559690:CDS
TTCAGCAAGATTGAATCTGA+CGG 0.647901 4_1:-58848106 None:intergenic
GAAAATACTCTTCCGGCGAA+CGG 0.650038 4_1:+58848046 Msa0559690:CDS
GAGTCGAAGAAATGGCGAAG+TGG 0.653341 4_1:-58847758 None:intergenic
AATTGTGGGAACTTCTTCTG+CGG 0.656744 4_1:-58847882 None:intergenic
GGCGCCGATTATAATGACGC+CGG 0.658005 4_1:-58847477 None:intergenic
TTCCAGAACAGTTAGCGGCG+AGG 0.659731 4_1:+58848080 Msa0559690:CDS
ATGGCGAAGTGGATCAGCGA+CGG 0.660659 4_1:-58847747 None:intergenic
TCACCACACAAATATAAACC+CGG 0.669871 4_1:-58848649 None:intergenic
TTGCAGCAGCTAAGCCGGCG+AGG 0.677374 4_1:-58847502 None:intergenic
GAAGTGGATCAGCGACGGTG+TGG 0.679688 4_1:-58847742 None:intergenic
TTTGGAAGCCACGGTCAAGG+AGG 0.708323 4_1:-58847616 None:intergenic
AGCCGTCGACAATGTCGGTG+CGG 0.709135 4_1:-58847592 None:intergenic
TGATGAGTTAGTGCTTAAGG+TGG 0.712943 4_1:+58848495 Msa0559690:CDS
CGGCGTTGGATGATTCGAGG+AGG 0.723146 4_1:-58847556 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGGTTAAATTATTATTAC+CGG + chr4_1:58848243-58848262 Msa0559690:CDS 15.0%
!! TTTGGTTAAATTATTATTAC+CGG + chr4_1:58848243-58848262 Msa0559690:CDS 15.0%
!!! TTTTTTAGTAAGTCAATTGT+GGG - chr4_1:58847899-58847918 None:intergenic 20.0%
!! AATAATAATTTAACCAAAGC+AGG - chr4_1:58848241-58848260 None:intergenic 20.0%
!! TTGGTTAAATTATTATTACC+GGG + chr4_1:58848244-58848263 Msa0559690:CDS 20.0%
!!! TTTTTTAGTAAGTCAATTGT+GGG - chr4_1:58847899-58847918 None:intergenic 20.0%
!! AATAATAATTTAACCAAAGC+AGG - chr4_1:58848241-58848260 None:intergenic 20.0%
!! TTGGTTAAATTATTATTACC+GGG + chr4_1:58848244-58848263 Msa0559690:CDS 20.0%
! ATCTTCGATAAATTACTCAT+CGG + chr4_1:58847812-58847831 Msa0559690:CDS 25.0%
!!! CTTTTTTAGTAAGTCAATTG+TGG - chr4_1:58847900-58847919 None:intergenic 25.0%
!! ATTGACTTACTAAAAAAGCT+AGG + chr4_1:58847902-58847921 Msa0559690:CDS 25.0%
! GAGATAAAATGGTAAAAGAA+TGG + chr4_1:58848542-58848561 Msa0559690:CDS 25.0%
! ATCTTCGATAAATTACTCAT+CGG + chr4_1:58847812-58847831 Msa0559690:CDS 25.0%
!!! CTTTTTTAGTAAGTCAATTG+TGG - chr4_1:58847900-58847919 None:intergenic 25.0%
!! ATTGACTTACTAAAAAAGCT+AGG + chr4_1:58847902-58847921 Msa0559690:CDS 25.0%
! GAGATAAAATGGTAAAAGAA+TGG + chr4_1:58848542-58848561 Msa0559690:CDS 25.0%
! GGATTGAATTTGAATGGTTT+TGG - chr4_1:58847410-58847429 None:intergenic 30.0%
! CATTTGGGATTGAATTTGAA+TGG - chr4_1:58847416-58847435 None:intergenic 30.0%
!! ATTTTTGGAGGTTTAAGGAT+TGG - chr4_1:58847685-58847704 None:intergenic 30.0%
!! GTAGAATTTTTGGAGGTTTA+AGG - chr4_1:58847690-58847709 None:intergenic 30.0%
GATGAGTAATTTATCGAAGA+TGG - chr4_1:58847813-58847832 None:intergenic 30.0%
TTAAAAACAGAACTGGATCA+CGG - chr4_1:58848351-58848370 None:intergenic 30.0%
!!! GATCCAGTTCTGTTTTTAAA+CGG + chr4_1:58848352-58848371 Msa0559690:CDS 30.0%
!!! AGTTCTGTTTTTAAACGGTT+CGG + chr4_1:58848357-58848376 Msa0559690:CDS 30.0%
TTGGTTTCAGTATCATTGAT+TGG + chr4_1:58848451-58848470 Msa0559690:CDS 30.0%
! TGGTTTCAGTATCATTGATT+GGG + chr4_1:58848452-58848471 Msa0559690:CDS 30.0%
! ATCATTGATTGGGTTATTTG+AGG + chr4_1:58848462-58848481 Msa0559690:CDS 30.0%
!! TAAAAGAATGGAAGCATTTG+AGG + chr4_1:58848554-58848573 Msa0559690:CDS 30.0%
! TTTTTCTTCAAATTCGTAGG+TGG - chr4_1:58848616-58848635 None:intergenic 30.0%
TTAAATGATAGAGCCTTCAT+TGG + chr4_1:58848736-58848755 Msa0559690:CDS 30.0%
! GGATTGAATTTGAATGGTTT+TGG - chr4_1:58847410-58847429 None:intergenic 30.0%
! CATTTGGGATTGAATTTGAA+TGG - chr4_1:58847416-58847435 None:intergenic 30.0%
!! ATTTTTGGAGGTTTAAGGAT+TGG - chr4_1:58847685-58847704 None:intergenic 30.0%
!! GTAGAATTTTTGGAGGTTTA+AGG - chr4_1:58847690-58847709 None:intergenic 30.0%
GATGAGTAATTTATCGAAGA+TGG - chr4_1:58847813-58847832 None:intergenic 30.0%
TTAAAAACAGAACTGGATCA+CGG - chr4_1:58848351-58848370 None:intergenic 30.0%
!!! GATCCAGTTCTGTTTTTAAA+CGG + chr4_1:58848352-58848371 Msa0559690:CDS 30.0%
!!! AGTTCTGTTTTTAAACGGTT+CGG + chr4_1:58848357-58848376 Msa0559690:CDS 30.0%
TTGGTTTCAGTATCATTGAT+TGG + chr4_1:58848451-58848470 Msa0559690:CDS 30.0%
! TGGTTTCAGTATCATTGATT+GGG + chr4_1:58848452-58848471 Msa0559690:CDS 30.0%
! ATCATTGATTGGGTTATTTG+AGG + chr4_1:58848462-58848481 Msa0559690:CDS 30.0%
!! TAAAAGAATGGAAGCATTTG+AGG + chr4_1:58848554-58848573 Msa0559690:CDS 30.0%
! TTTTTCTTCAAATTCGTAGG+TGG - chr4_1:58848616-58848635 None:intergenic 30.0%
TTAAATGATAGAGCCTTCAT+TGG + chr4_1:58848736-58848755 Msa0559690:CDS 30.0%
!!! ATTATAATGACGCCGGTTTT+GGG - chr4_1:58847473-58847492 None:intergenic 35.0%
AAAACCGGCGTCATTATAAT+CGG + chr4_1:58847473-58847492 Msa0559690:CDS 35.0%
!!! GATGTTTTTGGAGTTGAGAT+GGG - chr4_1:58847528-58847547 None:intergenic 35.0%
!! TTTTTGAGCTTCTGGATAAG+CGG - chr4_1:58847651-58847670 None:intergenic 35.0%
! GGTTTAAGGATTGGTAATTG+AGG - chr4_1:58847676-58847695 None:intergenic 35.0%
AACCTCCAAAAATTCTACTC+AGG + chr4_1:58847692-58847711 Msa0559690:CDS 35.0%
! TAGCACCTGAGTAGAATTTT+TGG - chr4_1:58847700-58847719 None:intergenic 35.0%
GGTGCTAAAATCTTCTACAA+CGG + chr4_1:58847713-58847732 Msa0559690:CDS 35.0%
AAATCCCTAACTAACCCTAT+CGG + chr4_1:58847785-58847804 Msa0559690:CDS 35.0%
AAGAAGATTCCGCCAAAAAA+CGG - chr4_1:58847962-58847981 None:intergenic 35.0%
!! TCTAGAAGTTGTTTCGAGTT+CGG - chr4_1:58847990-58848009 None:intergenic 35.0%
TTCAGCAAGATTGAATCTGA+CGG - chr4_1:58848109-58848128 None:intergenic 35.0%
AAACCCGGTTTACAAAAAAC+CGG + chr4_1:58848273-58848292 Msa0559690:CDS 35.0%
! TTTATATTTTACCGCGAACC+CGG + chr4_1:58848312-58848331 Msa0559690:CDS 35.0%
GAACCGTTTAAAAACAGAAC+TGG - chr4_1:58848358-58848377 None:intergenic 35.0%
!!! GTTCTGTTTTTAAACGGTTC+GGG + chr4_1:58848358-58848377 Msa0559690:CDS 35.0%
!! TTTTTAAACGGTTCGGGTAA+AGG + chr4_1:58848364-58848383 Msa0559690:CDS 35.0%
! TGATGATGAGTTAGTGCTTA+AGG + chr4_1:58848492-58848511 Msa0559690:CDS 35.0%
TAAGGTGGTTCAAGAACTTT+CGG + chr4_1:58848510-58848529 Msa0559690:CDS 35.0%
! GGGTTTTTCTTCAAATTCGT+AGG - chr4_1:58848619-58848638 None:intergenic 35.0%
GAAAAACCCAACAATTGAAC+CGG + chr4_1:58848630-58848649 Msa0559690:CDS 35.0%
AAAAACCCAACAATTGAACC+GGG + chr4_1:58848631-58848650 Msa0559690:CDS 35.0%
ATAAACCCGGTTCAATTGTT+GGG - chr4_1:58848639-58848658 None:intergenic 35.0%
TATAAACCCGGTTCAATTGT+TGG - chr4_1:58848640-58848659 None:intergenic 35.0%
TCACCACACAAATATAAACC+CGG - chr4_1:58848652-58848671 None:intergenic 35.0%
!!! ATTATAATGACGCCGGTTTT+GGG - chr4_1:58847473-58847492 None:intergenic 35.0%
AAAACCGGCGTCATTATAAT+CGG + chr4_1:58847473-58847492 Msa0559690:CDS 35.0%
!!! GATGTTTTTGGAGTTGAGAT+GGG - chr4_1:58847528-58847547 None:intergenic 35.0%
!! TTTTTGAGCTTCTGGATAAG+CGG - chr4_1:58847651-58847670 None:intergenic 35.0%
! GGTTTAAGGATTGGTAATTG+AGG - chr4_1:58847676-58847695 None:intergenic 35.0%
AACCTCCAAAAATTCTACTC+AGG + chr4_1:58847692-58847711 Msa0559690:CDS 35.0%
! TAGCACCTGAGTAGAATTTT+TGG - chr4_1:58847700-58847719 None:intergenic 35.0%
GGTGCTAAAATCTTCTACAA+CGG + chr4_1:58847713-58847732 Msa0559690:CDS 35.0%
AAATCCCTAACTAACCCTAT+CGG + chr4_1:58847785-58847804 Msa0559690:CDS 35.0%
AAGAAGATTCCGCCAAAAAA+CGG - chr4_1:58847962-58847981 None:intergenic 35.0%
!! TCTAGAAGTTGTTTCGAGTT+CGG - chr4_1:58847990-58848009 None:intergenic 35.0%
TTCAGCAAGATTGAATCTGA+CGG - chr4_1:58848109-58848128 None:intergenic 35.0%
AAACCCGGTTTACAAAAAAC+CGG + chr4_1:58848273-58848292 Msa0559690:CDS 35.0%
! TTTATATTTTACCGCGAACC+CGG + chr4_1:58848312-58848331 Msa0559690:CDS 35.0%
GAACCGTTTAAAAACAGAAC+TGG - chr4_1:58848358-58848377 None:intergenic 35.0%
!!! GTTCTGTTTTTAAACGGTTC+GGG + chr4_1:58848358-58848377 Msa0559690:CDS 35.0%
!! TTTTTAAACGGTTCGGGTAA+AGG + chr4_1:58848364-58848383 Msa0559690:CDS 35.0%
! TGATGATGAGTTAGTGCTTA+AGG + chr4_1:58848492-58848511 Msa0559690:CDS 35.0%
TAAGGTGGTTCAAGAACTTT+CGG + chr4_1:58848510-58848529 Msa0559690:CDS 35.0%
! GGGTTTTTCTTCAAATTCGT+AGG - chr4_1:58848619-58848638 None:intergenic 35.0%
GAAAAACCCAACAATTGAAC+CGG + chr4_1:58848630-58848649 Msa0559690:CDS 35.0%
AAAAACCCAACAATTGAACC+GGG + chr4_1:58848631-58848650 Msa0559690:CDS 35.0%
ATAAACCCGGTTCAATTGTT+GGG - chr4_1:58848639-58848658 None:intergenic 35.0%
TATAAACCCGGTTCAATTGT+TGG - chr4_1:58848640-58848659 None:intergenic 35.0%
TCACCACACAAATATAAACC+CGG - chr4_1:58848652-58848671 None:intergenic 35.0%
AAGAAGTGAAGAAGATGGAG+CGG - chr4_1:58847385-58847404 None:intergenic 40.0%
TGGAGAAGAAGTGAAGAAGA+TGG - chr4_1:58847390-58847409 None:intergenic 40.0%
!!! TTATAATGACGCCGGTTTTG+GGG - chr4_1:58847472-58847491 None:intergenic 40.0%
!!! GATTATAATGACGCCGGTTT+TGG - chr4_1:58847474-58847493 None:intergenic 40.0%
!!! GGATGTTTTTGGAGTTGAGA+TGG - chr4_1:58847529-58847548 None:intergenic 40.0%
TGATGAAGATTTGGAAGCCA+CGG - chr4_1:58847628-58847647 None:intergenic 40.0%
GATAAGCGGTGATGAAGATT+TGG - chr4_1:58847637-58847656 None:intergenic 40.0%
!! TTGAGGAGTTTTTGAGCTTC+TGG - chr4_1:58847659-58847678 None:intergenic 40.0%
!! CACCTGAGTAGAATTTTTGG+AGG - chr4_1:58847697-58847716 None:intergenic 40.0%
! ATTTTGCGGAGTCGAAGAAA+TGG - chr4_1:58847769-58847788 None:intergenic 40.0%
!!! AGGGTTAGTTAGGGATTTTG+CGG - chr4_1:58847783-58847802 None:intergenic 40.0%
TATCGAAGATGGAACCGATA+GGG - chr4_1:58847802-58847821 None:intergenic 40.0%
TTATCGAAGATGGAACCGAT+AGG - chr4_1:58847803-58847822 None:intergenic 40.0%
! TTTGTTCGTCGGATTTTGTG+AGG - chr4_1:58847856-58847875 None:intergenic 40.0%
AATTGTGGGAACTTCTTCTG+CGG - chr4_1:58847885-58847904 None:intergenic 40.0%
!!! AGATTCTTCCGACCGTTTTT+TGG + chr4_1:58847947-58847966 Msa0559690:CDS 40.0%
!! CTAGAAGTTGTTTCGAGTTC+GGG - chr4_1:58847989-58848008 None:intergenic 40.0%
!!! GCAGTTTCCGTTGATTTTGA+CGG + chr4_1:58848136-58848155 Msa0559690:CDS 40.0%
ATTGGAGCCGTCAAAATCAA+CGG - chr4_1:58848146-58848165 None:intergenic 40.0%
AACCAAAGCAGGTTCTTCAA+CGG - chr4_1:58848230-58848249 None:intergenic 40.0%
ATTACCGGGAAAGAAAAACC+CGG + chr4_1:58848258-58848277 Msa0559690:CDS 40.0%
! TAAACCGGGTTTTTCTTTCC+CGG - chr4_1:58848265-58848284 None:intergenic 40.0%
!!! GAACCGGTTTTTTGTAAACC+GGG - chr4_1:58848279-58848298 None:intergenic 40.0%
!!! CGAACCGGTTTTTTGTAAAC+CGG - chr4_1:58848280-58848299 None:intergenic 40.0%
CGGTTTACAAAAAACCGGTT+CGG + chr4_1:58848278-58848297 Msa0559690:CDS 40.0%
!! TTGTTTGGTGGTGCATATGA+TGG - chr4_1:58848427-58848446 None:intergenic 40.0%
ATCATATGCACCACCAAACA+AGG + chr4_1:58848426-58848445 Msa0559690:CDS 40.0%
! ACTGAAACCAATGCCTTGTT+TGG - chr4_1:58848442-58848461 None:intergenic 40.0%
TGATGAGTTAGTGCTTAAGG+TGG + chr4_1:58848495-58848514 Msa0559690:CDS 40.0%
AAGGTGGTTCAAGAACTTTC+GGG + chr4_1:58848511-58848530 Msa0559690:CDS 40.0%
!! GGGTTGGTTTGGAGATAAAA+TGG + chr4_1:58848531-58848550 Msa0559690:CDS 40.0%
!! GGAAGCATTTGAGGACTTAT+AGG + chr4_1:58848563-58848582 Msa0559690:CDS 40.0%
GAACCGGGTTTATATTTGTG+TGG + chr4_1:58848646-58848665 Msa0559690:CDS 40.0%
TTGACCTCAGCTACATTTGA+TGG + chr4_1:58848676-58848695 Msa0559690:CDS 40.0%
AGCTACATTTGATGGAGCTT+TGG + chr4_1:58848684-58848703 Msa0559690:CDS 40.0%
! TTTGATGGAGCTTTGGTTTC+TGG + chr4_1:58848691-58848710 Msa0559690:CDS 40.0%
AAGAAGTGAAGAAGATGGAG+CGG - chr4_1:58847385-58847404 None:intergenic 40.0%
TGGAGAAGAAGTGAAGAAGA+TGG - chr4_1:58847390-58847409 None:intergenic 40.0%
!!! TTATAATGACGCCGGTTTTG+GGG - chr4_1:58847472-58847491 None:intergenic 40.0%
!!! GATTATAATGACGCCGGTTT+TGG - chr4_1:58847474-58847493 None:intergenic 40.0%
!!! GGATGTTTTTGGAGTTGAGA+TGG - chr4_1:58847529-58847548 None:intergenic 40.0%
TGATGAAGATTTGGAAGCCA+CGG - chr4_1:58847628-58847647 None:intergenic 40.0%
GATAAGCGGTGATGAAGATT+TGG - chr4_1:58847637-58847656 None:intergenic 40.0%
!! TTGAGGAGTTTTTGAGCTTC+TGG - chr4_1:58847659-58847678 None:intergenic 40.0%
!! CACCTGAGTAGAATTTTTGG+AGG - chr4_1:58847697-58847716 None:intergenic 40.0%
! ATTTTGCGGAGTCGAAGAAA+TGG - chr4_1:58847769-58847788 None:intergenic 40.0%
!!! AGGGTTAGTTAGGGATTTTG+CGG - chr4_1:58847783-58847802 None:intergenic 40.0%
TATCGAAGATGGAACCGATA+GGG - chr4_1:58847802-58847821 None:intergenic 40.0%
TTATCGAAGATGGAACCGAT+AGG - chr4_1:58847803-58847822 None:intergenic 40.0%
! TTTGTTCGTCGGATTTTGTG+AGG - chr4_1:58847856-58847875 None:intergenic 40.0%
AATTGTGGGAACTTCTTCTG+CGG - chr4_1:58847885-58847904 None:intergenic 40.0%
!!! AGATTCTTCCGACCGTTTTT+TGG + chr4_1:58847947-58847966 Msa0559690:CDS 40.0%
!! CTAGAAGTTGTTTCGAGTTC+GGG - chr4_1:58847989-58848008 None:intergenic 40.0%
!!! GCAGTTTCCGTTGATTTTGA+CGG + chr4_1:58848136-58848155 Msa0559690:CDS 40.0%
ATTGGAGCCGTCAAAATCAA+CGG - chr4_1:58848146-58848165 None:intergenic 40.0%
AACCAAAGCAGGTTCTTCAA+CGG - chr4_1:58848230-58848249 None:intergenic 40.0%
ATTACCGGGAAAGAAAAACC+CGG + chr4_1:58848258-58848277 Msa0559690:CDS 40.0%
! TAAACCGGGTTTTTCTTTCC+CGG - chr4_1:58848265-58848284 None:intergenic 40.0%
!!! GAACCGGTTTTTTGTAAACC+GGG - chr4_1:58848279-58848298 None:intergenic 40.0%
!!! CGAACCGGTTTTTTGTAAAC+CGG - chr4_1:58848280-58848299 None:intergenic 40.0%
CGGTTTACAAAAAACCGGTT+CGG + chr4_1:58848278-58848297 Msa0559690:CDS 40.0%
!! TTGTTTGGTGGTGCATATGA+TGG - chr4_1:58848427-58848446 None:intergenic 40.0%
ATCATATGCACCACCAAACA+AGG + chr4_1:58848426-58848445 Msa0559690:CDS 40.0%
! ACTGAAACCAATGCCTTGTT+TGG - chr4_1:58848442-58848461 None:intergenic 40.0%
TGATGAGTTAGTGCTTAAGG+TGG + chr4_1:58848495-58848514 Msa0559690:CDS 40.0%
AAGGTGGTTCAAGAACTTTC+GGG + chr4_1:58848511-58848530 Msa0559690:CDS 40.0%
!! GGGTTGGTTTGGAGATAAAA+TGG + chr4_1:58848531-58848550 Msa0559690:CDS 40.0%
!! GGAAGCATTTGAGGACTTAT+AGG + chr4_1:58848563-58848582 Msa0559690:CDS 40.0%
GAACCGGGTTTATATTTGTG+TGG + chr4_1:58848646-58848665 Msa0559690:CDS 40.0%
TTGACCTCAGCTACATTTGA+TGG + chr4_1:58848676-58848695 Msa0559690:CDS 40.0%
AGCTACATTTGATGGAGCTT+TGG + chr4_1:58848684-58848703 Msa0559690:CDS 40.0%
! TTTGATGGAGCTTTGGTTTC+TGG + chr4_1:58848691-58848710 Msa0559690:CDS 40.0%
! GAGGAGGAAAGGGATGTTTT+TGG - chr4_1:58847540-58847559 None:intergenic 45.0%
ATGATTCGAGGAGGAGGAAA+GGG - chr4_1:58847550-58847569 None:intergenic 45.0%
!! GGAACCGATAGGGTTAGTTA+GGG - chr4_1:58847792-58847811 None:intergenic 45.0%
!! TGGAACCGATAGGGTTAGTT+AGG - chr4_1:58847793-58847812 None:intergenic 45.0%
!!! TTTTGTGAGGACACCGATTC+TGG - chr4_1:58847843-58847862 None:intergenic 45.0%
! TGCGGTAAGAGTTTGTTCGT+CGG - chr4_1:58847867-58847886 None:intergenic 45.0%
!!! TTCTTCCGACCGTTTTTTGG+CGG + chr4_1:58847950-58847969 Msa0559690:CDS 45.0%
AGATTCCGCCAAAAAACGGT+CGG - chr4_1:58847958-58847977 None:intergenic 45.0%
ATCTTCAAGTGTCTCGCTCT+CGG + chr4_1:58848022-58848041 Msa0559690:CDS 45.0%
TCTCGGCGAAAATACTCTTC+CGG + chr4_1:58848039-58848058 Msa0559690:CDS 45.0%
GAAAATACTCTTCCGGCGAA+CGG + chr4_1:58848046-58848065 Msa0559690:CDS 45.0%
AGCGATTCCAGAACAGTTAG+CGG + chr4_1:58848075-58848094 Msa0559690:CDS 45.0%
!! GACGTTTTGAGTAGCGAGTT+AGG + chr4_1:58848193-58848212 Msa0559690:CDS 45.0%
!! CAAAAAACCGGTTCGGAGTA+CGG + chr4_1:58848285-58848304 Msa0559690:CDS 45.0%
AAACAAACCGTACTCCGAAC+CGG - chr4_1:58848295-58848314 None:intergenic 45.0%
!! GAAACCAATGCCTTGTTTGG+TGG - chr4_1:58848439-58848458 None:intergenic 45.0%
! TGGTTCAAGAACTTTCGGGT+TGG + chr4_1:58848515-58848534 Msa0559690:CDS 45.0%
!! CAAGAACTTTCGGGTTGGTT+TGG + chr4_1:58848520-58848539 Msa0559690:CDS 45.0%
! TTCGTAGGTGGACACTGATT+AGG - chr4_1:58848604-58848623 None:intergenic 45.0%
AGCTCCATCAAATGTAGCTG+AGG - chr4_1:58848683-58848702 None:intergenic 45.0%
!! ATGGAGCTTTGGTTTCTGGT+AGG + chr4_1:58848695-58848714 Msa0559690:CDS 45.0%
! GAGGAGGAAAGGGATGTTTT+TGG - chr4_1:58847540-58847559 None:intergenic 45.0%
ATGATTCGAGGAGGAGGAAA+GGG - chr4_1:58847550-58847569 None:intergenic 45.0%
!! GGAACCGATAGGGTTAGTTA+GGG - chr4_1:58847792-58847811 None:intergenic 45.0%
!! TGGAACCGATAGGGTTAGTT+AGG - chr4_1:58847793-58847812 None:intergenic 45.0%
!!! TTTTGTGAGGACACCGATTC+TGG - chr4_1:58847843-58847862 None:intergenic 45.0%
! TGCGGTAAGAGTTTGTTCGT+CGG - chr4_1:58847867-58847886 None:intergenic 45.0%
!!! TTCTTCCGACCGTTTTTTGG+CGG + chr4_1:58847950-58847969 Msa0559690:CDS 45.0%
AGATTCCGCCAAAAAACGGT+CGG - chr4_1:58847958-58847977 None:intergenic 45.0%
ATCTTCAAGTGTCTCGCTCT+CGG + chr4_1:58848022-58848041 Msa0559690:CDS 45.0%
TCTCGGCGAAAATACTCTTC+CGG + chr4_1:58848039-58848058 Msa0559690:CDS 45.0%
GAAAATACTCTTCCGGCGAA+CGG + chr4_1:58848046-58848065 Msa0559690:CDS 45.0%
AGCGATTCCAGAACAGTTAG+CGG + chr4_1:58848075-58848094 Msa0559690:CDS 45.0%
!! GACGTTTTGAGTAGCGAGTT+AGG + chr4_1:58848193-58848212 Msa0559690:CDS 45.0%
!! CAAAAAACCGGTTCGGAGTA+CGG + chr4_1:58848285-58848304 Msa0559690:CDS 45.0%
AAACAAACCGTACTCCGAAC+CGG - chr4_1:58848295-58848314 None:intergenic 45.0%
!! GAAACCAATGCCTTGTTTGG+TGG - chr4_1:58848439-58848458 None:intergenic 45.0%
! TGGTTCAAGAACTTTCGGGT+TGG + chr4_1:58848515-58848534 Msa0559690:CDS 45.0%
!! CAAGAACTTTCGGGTTGGTT+TGG + chr4_1:58848520-58848539 Msa0559690:CDS 45.0%
! TTCGTAGGTGGACACTGATT+AGG - chr4_1:58848604-58848623 None:intergenic 45.0%
AGCTCCATCAAATGTAGCTG+AGG - chr4_1:58848683-58848702 None:intergenic 45.0%
!! ATGGAGCTTTGGTTTCTGGT+AGG + chr4_1:58848695-58848714 Msa0559690:CDS 45.0%
AGATGGAGCGGTTTGTGGAA+GGG - chr4_1:58847373-58847392 None:intergenic 50.0%
AAGATGGAGCGGTTTGTGGA+AGG - chr4_1:58847374-58847393 None:intergenic 50.0%
GAAGAAGATGGAGCGGTTTG+TGG - chr4_1:58847378-58847397 None:intergenic 50.0%
!! GCAAGTTGGGAGGAGCATTT+GGG - chr4_1:58847431-58847450 None:intergenic 50.0%
GATGATTCGAGGAGGAGGAA+AGG - chr4_1:58847551-58847570 None:intergenic 50.0%
AGATTTGGAAGCCACGGTCA+AGG - chr4_1:58847622-58847641 None:intergenic 50.0%
GAGTCGAAGAAATGGCGAAG+TGG - chr4_1:58847761-58847780 None:intergenic 50.0%
CTCATCGGAACCACCAGAAT+CGG + chr4_1:58847827-58847846 Msa0559690:CDS 50.0%
TGCCGTTGAAGAACCTGCTT+TGG + chr4_1:58848225-58848244 Msa0559690:CDS 50.0%
AACAGAACTGGATCACGGAC+CGG - chr4_1:58848346-58848365 None:intergenic 50.0%
TGCACCACCAAACAAGGCAT+TGG + chr4_1:58848432-58848451 Msa0559690:CDS 50.0%
AGATGGAGCGGTTTGTGGAA+GGG - chr4_1:58847373-58847392 None:intergenic 50.0%
AAGATGGAGCGGTTTGTGGA+AGG - chr4_1:58847374-58847393 None:intergenic 50.0%
GAAGAAGATGGAGCGGTTTG+TGG - chr4_1:58847378-58847397 None:intergenic 50.0%
!! GCAAGTTGGGAGGAGCATTT+GGG - chr4_1:58847431-58847450 None:intergenic 50.0%
GATGATTCGAGGAGGAGGAA+AGG - chr4_1:58847551-58847570 None:intergenic 50.0%
AGATTTGGAAGCCACGGTCA+AGG - chr4_1:58847622-58847641 None:intergenic 50.0%
GAGTCGAAGAAATGGCGAAG+TGG - chr4_1:58847761-58847780 None:intergenic 50.0%
CTCATCGGAACCACCAGAAT+CGG + chr4_1:58847827-58847846 Msa0559690:CDS 50.0%
TGCCGTTGAAGAACCTGCTT+TGG + chr4_1:58848225-58848244 Msa0559690:CDS 50.0%
AACAGAACTGGATCACGGAC+CGG - chr4_1:58848346-58848365 None:intergenic 50.0%
TGCACCACCAAACAAGGCAT+TGG + chr4_1:58848432-58848451 Msa0559690:CDS 50.0%
!! GGCAAGTTGGGAGGAGCATT+TGG - chr4_1:58847432-58847451 None:intergenic 55.0%
!! GGCGCCGATTATAATGACGC+CGG - chr4_1:58847480-58847499 None:intergenic 55.0%
GGCGTCATTATAATCGGCGC+CGG + chr4_1:58847479-58847498 Msa0559690:CDS 55.0%
! ATGGGTTGCAGCAGCTAAGC+CGG - chr4_1:58847510-58847529 None:intergenic 55.0%
CGTTGGATGATTCGAGGAGG+AGG - chr4_1:58847556-58847575 None:intergenic 55.0%
CTCGAATCATCCAACGCCGT+CGG + chr4_1:58847560-58847579 Msa0559690:CDS 55.0%
GAGGAAGCCGTCGACAATGT+CGG - chr4_1:58847600-58847619 None:intergenic 55.0%
TTTGGAAGCCACGGTCAAGG+AGG - chr4_1:58847619-58847638 None:intergenic 55.0%
GATCAGCGACGGTGTGGAAT+TGG - chr4_1:58847739-58847758 None:intergenic 55.0%
ATGGCGAAGTGGATCAGCGA+CGG - chr4_1:58847750-58847769 None:intergenic 55.0%
!! TGTGAGGACACCGATTCTGG+TGG - chr4_1:58847840-58847859 None:intergenic 55.0%
ATCGCTGAGATACCGTTCGC+CGG - chr4_1:58848061-58848080 None:intergenic 55.0%
TTCCAGAACAGTTAGCGGCG+AGG + chr4_1:58848080-58848099 Msa0559690:CDS 55.0%
AACCTCGCCGCTAACTGTTC+TGG - chr4_1:58848085-58848104 None:intergenic 55.0%
! CCGTTTTGCAACCTCACACG+CGG - chr4_1:58848172-58848191 None:intergenic 55.0%
CCGCGTGTGAGGTTGCAAAA+CGG + chr4_1:58848169-58848188 Msa0559690:CDS 55.0%
TCACGGACCGGGATTTGATC+CGG - chr4_1:58848334-58848353 None:intergenic 55.0%
ACAGAACTGGATCACGGACC+GGG - chr4_1:58848345-58848364 None:intergenic 55.0%
!! GGCAAGTTGGGAGGAGCATT+TGG - chr4_1:58847432-58847451 None:intergenic 55.0%
!! GGCGCCGATTATAATGACGC+CGG - chr4_1:58847480-58847499 None:intergenic 55.0%
GGCGTCATTATAATCGGCGC+CGG + chr4_1:58847479-58847498 Msa0559690:CDS 55.0%
! ATGGGTTGCAGCAGCTAAGC+CGG - chr4_1:58847510-58847529 None:intergenic 55.0%
CGTTGGATGATTCGAGGAGG+AGG - chr4_1:58847556-58847575 None:intergenic 55.0%
CTCGAATCATCCAACGCCGT+CGG + chr4_1:58847560-58847579 Msa0559690:CDS 55.0%
GAGGAAGCCGTCGACAATGT+CGG - chr4_1:58847600-58847619 None:intergenic 55.0%
TTTGGAAGCCACGGTCAAGG+AGG - chr4_1:58847619-58847638 None:intergenic 55.0%
GATCAGCGACGGTGTGGAAT+TGG - chr4_1:58847739-58847758 None:intergenic 55.0%
ATGGCGAAGTGGATCAGCGA+CGG - chr4_1:58847750-58847769 None:intergenic 55.0%
!! TGTGAGGACACCGATTCTGG+TGG - chr4_1:58847840-58847859 None:intergenic 55.0%
ATCGCTGAGATACCGTTCGC+CGG - chr4_1:58848061-58848080 None:intergenic 55.0%
TTCCAGAACAGTTAGCGGCG+AGG + chr4_1:58848080-58848099 Msa0559690:CDS 55.0%
AACCTCGCCGCTAACTGTTC+TGG - chr4_1:58848085-58848104 None:intergenic 55.0%
! CCGTTTTGCAACCTCACACG+CGG - chr4_1:58848172-58848191 None:intergenic 55.0%
CCGCGTGTGAGGTTGCAAAA+CGG + chr4_1:58848169-58848188 Msa0559690:CDS 55.0%
TCACGGACCGGGATTTGATC+CGG - chr4_1:58848334-58848353 None:intergenic 55.0%
ACAGAACTGGATCACGGACC+GGG - chr4_1:58848345-58848364 None:intergenic 55.0%
GGAGCGGTTTGTGGAAGGGA+GGG - chr4_1:58847369-58847388 None:intergenic 60.0%
TGGAGCGGTTTGTGGAAGGG+AGG - chr4_1:58847370-58847389 None:intergenic 60.0%
!!! GGTTTTGGGGAGTGAGGAGG+GGG - chr4_1:58847459-58847478 None:intergenic 60.0%
!!! CGGTTTTGGGGAGTGAGGAG+GGG - chr4_1:58847460-58847479 None:intergenic 60.0%
!!! CCGGTTTTGGGGAGTGAGGA+GGG - chr4_1:58847461-58847480 None:intergenic 60.0%
CCCTCCTCACTCCCCAAAAC+CGG + chr4_1:58847458-58847477 Msa0559690:CDS 60.0%
! CGGCGTTGGATGATTCGAGG+AGG - chr4_1:58847559-58847578 None:intergenic 60.0%
! CGACGGCGTTGGATGATTCG+AGG - chr4_1:58847562-58847581 None:intergenic 60.0%
GAATCATCCAACGCCGTCGG+TGG + chr4_1:58847563-58847582 Msa0559690:CDS 60.0%
! GTCCGCACCGACATTGTCGA+CGG + chr4_1:58847590-58847609 Msa0559690:CDS 60.0%
AGCCGTCGACAATGTCGGTG+CGG - chr4_1:58847595-58847614 None:intergenic 60.0%
GAAGTGGATCAGCGACGGTG+TGG - chr4_1:58847745-58847764 None:intergenic 60.0%
CAACCTCACACGCGGCGAAT+TGG - chr4_1:58848164-58848183 None:intergenic 60.0%
CGGGATTTGATCCGGGTTCG+CGG - chr4_1:58848326-58848345 None:intergenic 60.0%
CGCGAACCCGGATCAAATCC+CGG + chr4_1:58848324-58848343 Msa0559690:CDS 60.0%
CACGGACCGGGATTTGATCC+GGG - chr4_1:58848333-58848352 None:intergenic 60.0%
GGAGCGGTTTGTGGAAGGGA+GGG - chr4_1:58847369-58847388 None:intergenic 60.0%
TGGAGCGGTTTGTGGAAGGG+AGG - chr4_1:58847370-58847389 None:intergenic 60.0%
!!! GGTTTTGGGGAGTGAGGAGG+GGG - chr4_1:58847459-58847478 None:intergenic 60.0%
!!! CGGTTTTGGGGAGTGAGGAG+GGG - chr4_1:58847460-58847479 None:intergenic 60.0%
!!! CCGGTTTTGGGGAGTGAGGA+GGG - chr4_1:58847461-58847480 None:intergenic 60.0%
CCCTCCTCACTCCCCAAAAC+CGG + chr4_1:58847458-58847477 Msa0559690:CDS 60.0%
! CGGCGTTGGATGATTCGAGG+AGG - chr4_1:58847559-58847578 None:intergenic 60.0%
! CGACGGCGTTGGATGATTCG+AGG - chr4_1:58847562-58847581 None:intergenic 60.0%
GAATCATCCAACGCCGTCGG+TGG + chr4_1:58847563-58847582 Msa0559690:CDS 60.0%
! GTCCGCACCGACATTGTCGA+CGG + chr4_1:58847590-58847609 Msa0559690:CDS 60.0%
AGCCGTCGACAATGTCGGTG+CGG - chr4_1:58847595-58847614 None:intergenic 60.0%
GAAGTGGATCAGCGACGGTG+TGG - chr4_1:58847745-58847764 None:intergenic 60.0%
CAACCTCACACGCGGCGAAT+TGG - chr4_1:58848164-58848183 None:intergenic 60.0%
CGGGATTTGATCCGGGTTCG+CGG - chr4_1:58848326-58848345 None:intergenic 60.0%
CGCGAACCCGGATCAAATCC+CGG + chr4_1:58848324-58848343 Msa0559690:CDS 60.0%
CACGGACCGGGATTTGATCC+GGG - chr4_1:58848333-58848352 None:intergenic 60.0%
TTGGGGAGTGAGGAGGGGGT+GGG - chr4_1:58847455-58847474 None:intergenic 65.0%
TTTGGGGAGTGAGGAGGGGG+TGG - chr4_1:58847456-58847475 None:intergenic 65.0%
!!! GCCGGTTTTGGGGAGTGAGG+AGG - chr4_1:58847462-58847481 None:intergenic 65.0%
!!! GACGCCGGTTTTGGGGAGTG+AGG - chr4_1:58847465-58847484 None:intergenic 65.0%
TTGCAGCAGCTAAGCCGGCG+AGG - chr4_1:58847505-58847524 None:intergenic 65.0%
GACGGCTTCCTCCTTGACCG+TGG + chr4_1:58847608-58847627 Msa0559690:CDS 65.0%
GCTCCAATTCGCCGCGTGTG+AGG + chr4_1:58848158-58848177 Msa0559690:CDS 65.0%
TTGGGGAGTGAGGAGGGGGT+GGG - chr4_1:58847455-58847474 None:intergenic 65.0%
TTTGGGGAGTGAGGAGGGGG+TGG - chr4_1:58847456-58847475 None:intergenic 65.0%
!!! GCCGGTTTTGGGGAGTGAGG+AGG - chr4_1:58847462-58847481 None:intergenic 65.0%
!!! GACGCCGGTTTTGGGGAGTG+AGG - chr4_1:58847465-58847484 None:intergenic 65.0%
TTGCAGCAGCTAAGCCGGCG+AGG - chr4_1:58847505-58847524 None:intergenic 65.0%
GACGGCTTCCTCCTTGACCG+TGG + chr4_1:58847608-58847627 Msa0559690:CDS 65.0%
GCTCCAATTCGCCGCGTGTG+AGG + chr4_1:58848158-58848177 Msa0559690:CDS 65.0%
GGAGGGGGTGGGGGCAAGTT+GGG - chr4_1:58847444-58847463 None:intergenic 70.0%
AGGAGGGGGTGGGGGCAAGT+TGG - chr4_1:58847445-58847464 None:intergenic 70.0%
TGGGGAGTGAGGAGGGGGTG+GGG - chr4_1:58847454-58847473 None:intergenic 70.0%
!! ATAATCGGCGCCGGCCTCGC+CGG + chr4_1:58847488-58847507 Msa0559690:CDS 70.0%
AGCAGCTAAGCCGGCGAGGC+CGG - chr4_1:58847501-58847520 None:intergenic 70.0%
GGAGGGGGTGGGGGCAAGTT+GGG - chr4_1:58847444-58847463 None:intergenic 70.0%
AGGAGGGGGTGGGGGCAAGT+TGG - chr4_1:58847445-58847464 None:intergenic 70.0%
TGGGGAGTGAGGAGGGGGTG+GGG - chr4_1:58847454-58847473 None:intergenic 70.0%
!! ATAATCGGCGCCGGCCTCGC+CGG + chr4_1:58847488-58847507 Msa0559690:CDS 70.0%
AGCAGCTAAGCCGGCGAGGC+CGG - chr4_1:58847501-58847520 None:intergenic 70.0%
! GGGGGTGGGGGCAAGTTGGG+AGG - chr4_1:58847441-58847460 None:intergenic 75.0%
GGGGAGTGAGGAGGGGGTGG+GGG - chr4_1:58847453-58847472 None:intergenic 75.0%
GACGCGACCACCGACGGCGT+TGG - chr4_1:58847573-58847592 None:intergenic 75.0%
GGTGCGGACGCGACCACCGA+CGG - chr4_1:58847579-58847598 None:intergenic 75.0%
! GGGGGTGGGGGCAAGTTGGG+AGG - chr4_1:58847441-58847460 None:intergenic 75.0%
GGGGAGTGAGGAGGGGGTGG+GGG - chr4_1:58847453-58847472 None:intergenic 75.0%
GACGCGACCACCGACGGCGT+TGG - chr4_1:58847573-58847592 None:intergenic 75.0%
GGTGCGGACGCGACCACCGA+CGG - chr4_1:58847579-58847598 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 58847350 58848762 58847350 ID=Msa0559690;Name=Msa0559690
chr4_1 mRNA 58847350 58848762 58847350 ID=Msa0559690-mRNA-1;Parent=Msa0559690;Name=Msa0559690-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|-1|0|1|-1|1|1|0|470
chr4_1 exon 58847350 58848762 58847350 ID=Msa0559690-mRNA-1:exon:18029;Parent=Msa0559690-mRNA-1
chr4_1 CDS 58847350 58848762 58847350 ID=Msa0559690-mRNA-1:cds;Parent=Msa0559690-mRNA-1
Gene Sequence

>Msa0559690

ATGACGATCACACTTTCCCTCCCTTCCACAAACCGCTCCATCTTCTTCACTTCTTCTCCAAAACCATTCAAATTCAATCCCAAATGCTCCTCCCAACTTGCCCCCACCCCCTCCTCACTCCCCAAAACCGGCGTCATTATAATCGGCGCCGGCCTCGCCGGCTTAGCTGCTGCAACCCATCTCAACTCCAAAAACATCCCTTTCCTCCTCCTCGAATCATCCAACGCCGTCGGTGGTCGCGTCCGCACCGACATTGTCGACGGCTTCCTCCTTGACCGTGGCTTCCAAATCTTCATCACCGCTTATCCAGAAGCTCAAAAACTCCTCAATTACCAATCCTTAAACCTCCAAAAATTCTACTCAGGTGCTAAAATCTTCTACAACGGCCAATTCCACACCGTCGCTGATCCACTTCGCCATTTCTTCGACTCCGCAAAATCCCTAACTAACCCTATCGGTTCCATCTTCGATAAATTACTCATCGGAACCACCAGAATCGGTGTCCTCACAAAATCCGACGAACAAACTCTTACCGCAGAAGAAGTTCCCACAATTGACTTACTAAAAAAGCTAGGATTTTCAGATTCAATCATTAGAAGATTCTTCCGACCGTTTTTTGGCGGAATCTTCTTCGATCCCGAACTCGAAACAACTTCTAGATTATTCGATTTCATCTTCAAGTGTCTCGCTCTCGGCGAAAATACTCTTCCGGCGAACGGTATCTCAGCGATTCCAGAACAGTTAGCGGCGAGGTTACCGTCAGATTCAATCTTGCTGAACACTAAAGCAGTTTCCGTTGATTTTGACGGCTCCAATTCGCCGCGTGTGAGGTTGCAAAACGGTGACGTTTTGAGTAGCGAGTTAGGAGTGATCGTTGCCGTTGAAGAACCTGCTTTGGTTAAATTATTATTACCGGGAAAGAAAAACCCGGTTTACAAAAAACCGGTTCGGAGTACGGTTTGTTTATATTTTACCGCGAACCCGGATCAAATCCCGGTCCGTGATCCAGTTCTGTTTTTAAACGGTTCGGGTAAAGGAATAGTGAATAACATGTTTTTTGTGACAAATGTAGCACCATCATATGCACCACCAAACAAGGCATTGGTTTCAGTATCATTGATTGGGTTATTTGAGGATGTATCTGATGATGAGTTAGTGCTTAAGGTGGTTCAAGAACTTTCGGGTTGGTTTGGAGATAAAATGGTAAAAGAATGGAAGCATTTGAGGACTTATAGGATTGAGTATGCACAACCTAATCAGTGTCCACCTACGAATTTGAAGAAAAACCCAACAATTGAACCGGGTTTATATTTGTGTGGTGATTATTTGACCTCAGCTACATTTGATGGAGCTTTGGTTTCTGGTAGGAGAGCAGCTGAATCACTGTTAAATGATAGAGCCTTCATTGGCTAA

Protein sequence

>Msa0559690

MTITLSLPSTNRSIFFTSSPKPFKFNPKCSSQLAPTPSSLPKTGVIIIGAGLAGLAAATHLNSKNIPFLLLESSNAVGGRVRTDIVDGFLLDRGFQIFITAYPEAQKLLNYQSLNLQKFYSGAKIFYNGQFHTVADPLRHFFDSAKSLTNPIGSIFDKLLIGTTRIGVLTKSDEQTLTAEEVPTIDLLKKLGFSDSIIRRFFRPFFGGIFFDPELETTSRLFDFIFKCLALGENTLPANGISAIPEQLAARLPSDSILLNTKAVSVDFDGSNSPRVRLQNGDVLSSELGVIVAVEEPALVKLLLPGKKNPVYKKPVRSTVCLYFTANPDQIPVRDPVLFLNGSGKGIVNNMFFVTNVAPSYAPPNKALVSVSLIGLFEDVSDDELVLKVVQELSGWFGDKMVKEWKHLRTYRIEYAQPNQCPPTNLKKNPTIEPGLYLCGDYLTSATFDGALVSGRRAAESLLNDRAFIG*