AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0297640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0297640 MtrunA17_Chr2g0285841 93.569 311 20 0 1 311 1 311 0.0 593
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0297640 AT1G30130.3 58.438 320 115 3 1 311 1 311 6.55e-136 388
Msa0297640 AT1G30130.1 58.438 320 115 3 1 311 1 311 6.55e-136 388
Msa0297640 AT1G30130.2 58.438 320 115 3 1 311 1 311 6.55e-136 388

Find 92 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTACCTCATGTCAAATT+TGG 0.161730 2_3:+51349744 None:intergenic
TCCTTGTTGGTGTTTAATTT+TGG 0.182388 2_3:+51353089 None:intergenic
GTCCATTGGTATCGGTAATT+TGG 0.233892 2_3:+51352744 None:intergenic
TTAGGTGGATTGACGCTAAA+TGG 0.269497 2_3:-51350040 Msa0297640:CDS
TGTAGGTTGACTTTGTATTC+TGG 0.272744 2_3:-51349936 Msa0297640:three_prime_UTR
TATAATTTACATACCATAAA+AGG 0.293975 2_3:+51351606 None:intergenic
TCCTGGTTGCTTCCTCTTTG+TGG 0.305566 2_3:+51350101 None:intergenic
TCAGTTCATCACCCTGAGTT+TGG 0.330540 2_3:-51351198 Msa0297640:CDS
TCCTCCAGGCTATAAAATTA+TGG 0.331657 2_3:-51350226 Msa0297640:intron
GGTTACCATCATTACCAGTT+TGG 0.334757 2_3:+51349960 None:intergenic
AGTACCTTCGTAGAGAGATA+TGG 0.376715 2_3:+51352889 None:intergenic
GTTACCATCATTACCAGTTT+GGG 0.387512 2_3:+51349961 None:intergenic
GTAATTTGGCGAGCTTCATC+TGG 0.388533 2_3:+51352758 None:intergenic
GTCCTAGAGACAGGTGGTTT+AGG 0.396339 2_3:-51350058 Msa0297640:CDS
AATAAGAGTGGTGAAGGAAA+TGG 0.409411 2_3:+51353000 None:intergenic
TATAACGAACATTCCCAAAC+TGG 0.420353 2_3:-51349974 Msa0297640:three_prime_UTR
AGGTTGCTGTATGGATATAC+TGG 0.426939 2_3:-51351086 Msa0297640:CDS
GTAAAATAGTTTCCAAACTC+AGG 0.442321 2_3:+51351186 None:intergenic
TATGGGTTCAGCTCCGTCAT+TGG 0.448545 2_3:+51352907 None:intergenic
GCGCGTGAGGTGCACGGTCG+AGG 0.452719 2_3:+51352798 None:intergenic
TGATGTCGAGCACAACTTGT+TGG 0.459330 2_3:+51351149 None:intergenic
CGCCGCAGTAGCGCGTGAAA+AGG 0.462406 2_3:+51352962 None:intergenic
AATATCAAAGCAAGTGATCC+TGG 0.464370 2_3:-51351243 Msa0297640:CDS
TGTTCATATCCCACACTAGC+TGG 0.466991 2_3:+51352562 None:intergenic
TTCATCTGGAGAAAGATGAT+TGG 0.468451 2_3:+51352772 None:intergenic
GAACCGGGTGGCGGCGCTGA+TGG 0.470400 2_3:+51352861 None:intergenic
TTGTAATAATAGTGTACATC+AGG 0.472463 2_3:-51349822 Msa0297640:three_prime_UTR
TACGTGGGAATGGCATATCT+AGG 0.480461 2_3:+51350176 None:intergenic
CTTCGTCAGCTAAATAATCC+TGG 0.483547 2_3:+51350084 None:intergenic
AACTATGACAGGATATGCTT+GGG 0.484809 2_3:-51351272 Msa0297640:intron
CATTCCCAAACTGGTAATGA+TGG 0.485448 2_3:-51349965 Msa0297640:three_prime_UTR
TAGCAATAATACACACTCAA+TGG 0.488999 2_3:+51352535 None:intergenic
AGGACTGACATGCAAAGCTT+TGG 0.490500 2_3:+51351626 None:intergenic
TTCGTCCCTGTACGTGGGAA+TGG 0.491251 2_3:+51350166 None:intergenic
ATCCATACAGCAACCTTATG+AGG 0.491264 2_3:+51351093 None:intergenic
TATTGAAAGGAATGGTGAAC+CGG 0.494360 2_3:+51352845 None:intergenic
AGAATGCGGATTGAAAATAA+AGG 0.498652 2_3:+51351659 None:intergenic
TCATCTGGAGAAAGATGATT+GGG 0.500771 2_3:+51352773 None:intergenic
CTACCATCAGCGCCGCCACC+CGG 0.504605 2_3:-51352864 Msa0297640:CDS
GAACTATGACAGGATATGCT+TGG 0.507027 2_3:-51351273 Msa0297640:intron
GATATGCCATTCCCACGTAC+AGG 0.511186 2_3:-51350172 Msa0297640:CDS
GACAGGATATGCTTGGGAGT+TGG 0.511416 2_3:-51351266 Msa0297640:intron
TTCAGCTCCGTCATTGGAAG+AGG 0.511539 2_3:+51352913 None:intergenic
GTACCTTCGTAGAGAGATAT+GGG 0.518661 2_3:+51352890 None:intergenic
TCGATCCACATTTCACTATG+TGG 0.518798 2_3:+51349869 None:intergenic
AAACACTTACATGGGTCCAT+TGG 0.525548 2_3:+51352730 None:intergenic
AGGAATGGTGAACCGGGTGG+CGG 0.528502 2_3:+51352852 None:intergenic
GCTTCTTCCTCTTCCAATGA+CGG 0.530349 2_3:-51352920 Msa0297640:CDS
GGATAGAATAAGAGTGGTGA+AGG 0.535689 2_3:+51352994 None:intergenic
AAGGTTACTCTTTCAGCCCA+TGG 0.536237 2_3:+51351678 None:intergenic
CTAGAGACAGGTGGTTTAGG+TGG 0.538191 2_3:-51350055 Msa0297640:CDS
ATTGACAATTCCAGCTAGTG+TGG 0.542422 2_3:-51352572 Msa0297640:CDS
ACGAAGCAAGTCCTAGAGAC+AGG 0.547793 2_3:-51350067 Msa0297640:CDS
CACCTAAACCACCTGTCTCT+AGG 0.548815 2_3:+51350056 None:intergenic
CGCGTGAAAAGGAAGGATAA+TGG 0.557879 2_3:+51352973 None:intergenic
GATAGAAAACTGCAGTGTTG+TGG 0.563843 2_3:-51350131 Msa0297640:CDS
TAAAGCTTCGTCCCTGTACG+TGG 0.567298 2_3:+51350160 None:intergenic
GATAATGGATAGAATAAGAG+TGG 0.572586 2_3:+51352988 None:intergenic
TGCCTCATAAGGTTGCTGTA+TGG 0.575098 2_3:-51351095 Msa0297640:CDS
TAAAATAGTTTCCAAACTCA+GGG 0.579999 2_3:+51351187 None:intergenic
ACGTGGGAATGGCATATCTA+GGG 0.589402 2_3:+51350177 None:intergenic
AGAGGAAGAAGCGGCGCGTG+AGG 0.594894 2_3:+51352931 None:intergenic
GAATACAAAGTCAACCTACA+TGG 0.596208 2_3:+51349939 None:intergenic
GTAGCGAACATTGTATTGAA+AGG 0.600684 2_3:+51352832 None:intergenic
TCCACAAAGAGGAAGCAACC+AGG 0.603581 2_3:-51350102 Msa0297640:CDS
TTACATGGGTCCATTGGTAT+CGG 0.607772 2_3:+51352736 None:intergenic
CGCCAAATTACCGATACCAA+TGG 0.613455 2_3:-51352746 Msa0297640:CDS
GGATTGACGCTAAATGGCCA+TGG 0.618793 2_3:-51350034 Msa0297640:CDS
GAACATTGTATTGAAAGGAA+TGG 0.618795 2_3:+51352837 None:intergenic
TGGGTGGCGCGTGAGGTGCA+CGG 0.621460 2_3:+51352792 None:intergenic
AGATGATTGGGTGGCGCGTG+AGG 0.621550 2_3:+51352785 None:intergenic
GCAGTAGCGCGTGAAAAGGA+AGG 0.621678 2_3:+51352966 None:intergenic
TATGTCCACATAGTGAAATG+TGG 0.624391 2_3:-51349874 Msa0297640:three_prime_UTR
TCCAGGCTATAAAATTATGG+TGG 0.628267 2_3:-51350223 Msa0297640:intron
GTCATTGGAAGAGGAAGAAG+CGG 0.628278 2_3:+51352922 None:intergenic
GTTGTGCTCGACATCAGCAT+CGG 0.629113 2_3:-51351142 Msa0297640:CDS
ATATGCCATTCCCACGTACA+GGG 0.629309 2_3:-51350171 Msa0297640:CDS
GGTAATGATGGTAACCATGT+AGG 0.629430 2_3:-51349953 Msa0297640:three_prime_UTR
AAGTCACCAAATTTGACATG+AGG 0.642319 2_3:-51349750 Msa0297640:three_prime_UTR
TCAGGTAACAAATACACCAT+GGG 0.642717 2_3:-51351694 Msa0297640:intron
TTTGAAGAAGTGCATTGCTG+AGG 0.643953 2_3:-51352488 Msa0297640:intron
TTCAGGTAACAAATACACCA+TGG 0.647309 2_3:-51351695 Msa0297640:intron
TTGACAATTCCAGCTAGTGT+GGG 0.653320 2_3:-51352571 Msa0297640:CDS
TCTGGAGAAAGATGATTGGG+TGG 0.677082 2_3:+51352776 None:intergenic
ATTGAAAGGAATGGTGAACC+GGG 0.679558 2_3:+51352846 None:intergenic
ACCAAAATTAAACACCAACA+AGG 0.684374 2_3:-51353090 Msa0297640:five_prime_UTR
TGTGGATTCAGTCCACAAAG+AGG 0.695546 2_3:-51350113 Msa0297640:CDS
GAAAGGAATGGTGAACCGGG+TGG 0.699357 2_3:+51352849 None:intergenic
AAAGCTTCGTCCCTGTACGT+GGG 0.700795 2_3:+51350161 None:intergenic
TTGGCTACTAGATCAGAATG+CGG 0.714234 2_3:+51351645 None:intergenic
AAGCAAGTCCTAGAGACAGG+TGG 0.718600 2_3:-51350064 Msa0297640:CDS
GAACCCATATCTCTCTACGA+AGG 0.724309 2_3:-51352893 Msa0297640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATTCCATTATTATTTT+TGG + chr2_3:51349871-51349890 None:intergenic 10.0%
!! AATACTTAATCATTTAAAAA+TGG + chr2_3:51351865-51351884 None:intergenic 10.0%
!!! ATTTTCACCAAAAATAATAA+TGG - chr2_3:51349861-51349880 Msa0297640:three_prime_UTR 15.0%
!! ATTATATGTGTAAATTGAAA+AGG + chr2_3:51350490-51350509 None:intergenic 15.0%
!!! GTATTTTGATAAAGAAATAT+AGG - chr2_3:51350598-51350617 Msa0297640:intron 15.0%
!! TATAATTTACATACCATAAA+AGG + chr2_3:51351311-51351330 None:intergenic 15.0%
!!! TTAATTTAAGTTAACTATGT+AGG + chr2_3:51351554-51351573 None:intergenic 15.0%
!!! TTAGTTATTTTGAAAATTGA+GGG + chr2_3:51352118-51352137 None:intergenic 15.0%
!! CATAAAAAACATTGTTTATA+TGG - chr2_3:51352305-51352324 Msa0297640:intron 15.0%
!!! TAAAAATGTTTTTTCCTTGT+TGG + chr2_3:51349841-51349860 None:intergenic 20.0%
!!! ATTCTTTACTTTTTCTCAAT+TGG - chr2_3:51350213-51350232 Msa0297640:CDS 20.0%
!!! TTCTTTACTTTTTCTCAATT+GGG - chr2_3:51350214-51350233 Msa0297640:CDS 20.0%
!! TTACGTTTCAATTTAAATGT+AGG - chr2_3:51350266-51350285 Msa0297640:intron 20.0%
!! TGAGAAGATTAATTAATTAG+TGG - chr2_3:51350576-51350595 Msa0297640:intron 20.0%
!! TTCTATCATAAACCATATTT+GGG - chr2_3:51350906-51350925 Msa0297640:intron 20.0%
!! CAAAAAATATTTACTTCTCA+TGG + chr2_3:51351979-51351998 None:intergenic 20.0%
!!! AAATATTTTTTGCTTGAGAT+TGG - chr2_3:51351987-51352006 Msa0297640:intron 20.0%
!!! AATATTTTTTGCTTGAGATT+GGG - chr2_3:51351988-51352007 Msa0297640:intron 20.0%
!!! TTTGACTTAAAATGCATTTT+TGG - chr2_3:51352043-51352062 Msa0297640:intron 20.0%
!!! TATTTTTAAATCCACGATTT+TGG - chr2_3:51352091-51352110 Msa0297640:intron 20.0%
!!! GTTAGTTATTTTGAAAATTG+AGG + chr2_3:51352119-51352138 None:intergenic 20.0%
!! TTTCAATTCAAATGCAAAAA+TGG + chr2_3:51352536-51352555 None:intergenic 20.0%
!! ACATAAAGTAATTCCTAAAA+AGG + chr2_3:51352620-51352639 None:intergenic 20.0%
!!! TGTGTAAATTCTAAATTTTG+AGG - chr2_3:51353123-51353142 Msa0297640:five_prime_UTR 20.0%
!! TTTTATATGGGTGTTAACAT+AGG - chr2_3:51349750-51349769 Msa0297640:three_prime_UTR 25.0%
! ATGAAGAAAAACACTTACAT+GGG + chr2_3:51350195-51350214 None:intergenic 25.0%
! AATGAAGAAAAACACTTACA+TGG + chr2_3:51350196-51350215 None:intergenic 25.0%
!! CGTAAAAATCAAATTTTGCA+TGG + chr2_3:51350251-51350270 None:intergenic 25.0%
! CATATGGAGAAAATTCAATT+GGG - chr2_3:51350728-51350747 Msa0297640:intron 25.0%
! TTGTTAGGTTATCATGTTAT+GGG + chr2_3:51350819-51350838 None:intergenic 25.0%
! GTTCTATCATAAACCATATT+TGG - chr2_3:51350905-51350924 Msa0297640:intron 25.0%
! AAACTATAAGAGAAACTGTT+AGG + chr2_3:51350958-51350977 None:intergenic 25.0%
!! GTTTCTCTTATAGTTTTTCT+AGG - chr2_3:51350962-51350981 Msa0297640:intron 25.0%
! AGAAGAATAAACTGACAAAA+TGG + chr2_3:51351014-51351033 None:intergenic 25.0%
! GTCAGTTTATTCTTCTTTAT+AGG - chr2_3:51351018-51351037 Msa0297640:intron 25.0%
!! ATTCAGATACTTGATAATTC+AGG - chr2_3:51351108-51351127 Msa0297640:CDS 25.0%
!!! CGATGTTTTTTTTTTGTTTC+AGG - chr2_3:51351202-51351221 Msa0297640:CDS 25.0%
!!! ATAGCTTTTCTGCATTTTTT+CGG - chr2_3:51351597-51351616 Msa0297640:intron 25.0%
! TAAAATAGTTTCCAAACTCA+GGG + chr2_3:51351730-51351749 None:intergenic 25.0%
!! TTGTTATGATGAATTTTCGT+TGG - chr2_3:51351906-51351925 Msa0297640:intron 25.0%
!! AGCAATTTAAAATCTCACTT+CGG - chr2_3:51351931-51351950 Msa0297640:intron 25.0%
! TCTGTGACATAATACTATTT+AGG - chr2_3:51352212-51352231 Msa0297640:intron 25.0%
!!! TATTTTTAGATCCCTGAATT+TGG + chr2_3:51352453-51352472 None:intergenic 25.0%
! AATTCAGGGATCTAAAAATA+TGG - chr2_3:51352453-51352472 Msa0297640:intron 25.0%
! ATTCAGGGATCTAAAAATAT+GGG - chr2_3:51352454-51352473 Msa0297640:intron 25.0%
!! TATTTTGTCTCATACGATTT+TGG + chr2_3:51352481-51352500 None:intergenic 25.0%
! AAAATAAAGGCAGTAAAGTT+GGG + chr2_3:51352566-51352585 None:intergenic 25.0%
! TAAAATAAAGGCAGTAAAGT+TGG + chr2_3:51352567-51352586 None:intergenic 25.0%
!!! CTTTACTGCCTTTATTTTAA+TGG - chr2_3:51352568-51352587 Msa0297640:CDS 25.0%
! CAACATGTCCATTAAAATAA+AGG + chr2_3:51352579-51352598 None:intergenic 25.0%
! TTGTAATAATAGTGTACATC+AGG - chr2_3:51353092-51353111 Msa0297640:five_prime_UTR 25.0%
ACCAAAATTAAACACCAACA+AGG - chr2_3:51349824-51349843 Msa0297640:three_prime_UTR 30.0%
!! TCCTTGTTGGTGTTTAATTT+TGG + chr2_3:51349828-51349847 None:intergenic 30.0%
!! GATAATGGATAGAATAAGAG+TGG + chr2_3:51349929-51349948 None:intergenic 30.0%
GAACATTGTATTGAAAGGAA+TGG + chr2_3:51350080-51350099 None:intergenic 30.0%
TAGCAATAATACACACTCAA+TGG + chr2_3:51350382-51350401 None:intergenic 30.0%
TTTGTCGCTAAACATAGTAA+GGG - chr2_3:51350541-51350560 Msa0297640:intron 30.0%
TAACAATGAATTTGTCTGAG+TGG - chr2_3:51350643-51350662 Msa0297640:intron 30.0%
GCATATGGAGAAAATTCAAT+TGG - chr2_3:51350727-51350746 Msa0297640:intron 30.0%
GTTGTTAGGTTATCATGTTA+TGG + chr2_3:51350820-51350839 None:intergenic 30.0%
!!! TGGTTGTTTTTGTTGTTGTT+AGG + chr2_3:51350834-51350853 None:intergenic 30.0%
ATGTAGCTATCTCATTTAGT+AGG + chr2_3:51350865-51350884 None:intergenic 30.0%
TACTAAATGAGATAGCTACA+TGG - chr2_3:51350864-51350883 Msa0297640:intron 30.0%
CTTCTTTATAGGATTTCTCT+TGG - chr2_3:51351029-51351048 Msa0297640:intron 30.0%
!! TGGTGTTTTTCACTTTTATG+TGG - chr2_3:51351071-51351090 Msa0297640:intron 30.0%
!! GGTGTTTTTCACTTTTATGT+GGG - chr2_3:51351072-51351091 Msa0297640:intron 30.0%
!! AAGTAGAGTATTGTGAAAAC+TGG - chr2_3:51351176-51351195 Msa0297640:CDS 30.0%
! AGAATGCGGATTGAAAATAA+AGG + chr2_3:51351258-51351277 None:intergenic 30.0%
! ACCATTTCTATGCAGATTTT+AGG - chr2_3:51351330-51351349 Msa0297640:intron 30.0%
TCCTAAAATCTGCATAGAAA+TGG + chr2_3:51351334-51351353 None:intergenic 30.0%
GAAGAGGAAAACACAATATA+TGG + chr2_3:51351441-51351460 None:intergenic 30.0%
! ATTGTGTTTTCCTCTTCTTT+TGG - chr2_3:51351444-51351463 Msa0297640:intron 30.0%
GCATAATATGATTCAAACTG+AGG - chr2_3:51351472-51351491 Msa0297640:intron 30.0%
CAATCAACACATACATATCA+TGG - chr2_3:51351510-51351529 Msa0297640:intron 30.0%
GTAAAATAGTTTCCAAACTC+AGG + chr2_3:51351731-51351750 None:intergenic 30.0%
! GCAATTTAAAATCTCACTTC+GGG - chr2_3:51351932-51351951 Msa0297640:intron 30.0%
! CAATTTAAAATCTCACTTCG+GGG - chr2_3:51351933-51351952 Msa0297640:intron 30.0%
CTTCTCATGGAAGAAAATAA+TGG + chr2_3:51351966-51351985 None:intergenic 30.0%
CAACAACAACAACAAAATAG+AGG + chr2_3:51352071-51352090 None:intergenic 30.0%
TAATTGTGTGAGAACTAAGA+TGG + chr2_3:51352361-51352380 None:intergenic 30.0%
!!! TGGGTTGATTTTTGATGATT+TGG + chr2_3:51352393-51352412 None:intergenic 30.0%
AAAATCAACCCAAATGCATA+TGG - chr2_3:51352401-51352420 Msa0297640:intron 30.0%
AAATCAACCCAAATGCATAT+GGG - chr2_3:51352402-51352421 Msa0297640:intron 30.0%
! CTTGATATTTTCTATGACCA+TGG + chr2_3:51352900-51352919 None:intergenic 30.0%
AATAAGAGTGGTGAAGGAAA+TGG + chr2_3:51349917-51349936 None:intergenic 35.0%
TATTGAAAGGAATGGTGAAC+CGG + chr2_3:51350072-51350091 None:intergenic 35.0%
GTAGCGAACATTGTATTGAA+AGG + chr2_3:51350085-51350104 None:intergenic 35.0%
TCATCTGGAGAAAGATGATT+GGG + chr2_3:51350144-51350163 None:intergenic 35.0%
TTCATCTGGAGAAAGATGAT+TGG + chr2_3:51350145-51350164 None:intergenic 35.0%
!!! CAAATTTTGCATGGTTCTGA+GGG + chr2_3:51350242-51350261 None:intergenic 35.0%
!! TCAAATTTTGCATGGTTCTG+AGG + chr2_3:51350243-51350262 None:intergenic 35.0%
CTTTGTCGCTAAACATAGTA+AGG - chr2_3:51350540-51350559 Msa0297640:intron 35.0%
TTCTCCATATGCAATAGTCA+GGG + chr2_3:51350719-51350738 None:intergenic 35.0%
TTTCTCCATATGCAATAGTC+AGG + chr2_3:51350720-51350739 None:intergenic 35.0%
ATGGAGAAAATTCAATTGGG+AGG - chr2_3:51350731-51350750 Msa0297640:intron 35.0%
TGGAGAAAATTCAATTGGGA+GGG - chr2_3:51350732-51350751 Msa0297640:intron 35.0%
AGCTATCTCATTTAGTAGGA+TGG + chr2_3:51350861-51350880 None:intergenic 35.0%
! CAATGAGTTGAACCCAAATA+TGG + chr2_3:51350921-51350940 None:intergenic 35.0%
GTTGAGTGAAAAACAGTTTG+TGG - chr2_3:51351051-51351070 Msa0297640:intron 35.0%
TTCAGGTAACAAATACACCA+TGG - chr2_3:51351219-51351238 Msa0297640:CDS 35.0%
TCAGGTAACAAATACACCAT+GGG - chr2_3:51351220-51351239 Msa0297640:CDS 35.0%
! TTTGCATGTCAGTCCTTTTA+TGG - chr2_3:51351295-51351314 Msa0297640:intron 35.0%
TATGCAATGACCAAAAGAAG+AGG + chr2_3:51351457-51351476 None:intergenic 35.0%
CAACACATACATATCATGGT+TGG - chr2_3:51351514-51351533 Msa0297640:intron 35.0%
AACTATGACAGGATATGCTT+GGG - chr2_3:51351642-51351661 Msa0297640:CDS 35.0%
AATATCAAAGCAAGTGATCC+TGG - chr2_3:51351671-51351690 Msa0297640:CDS 35.0%
! GATATGCTAAGATTTTCTCC+AGG + chr2_3:51351692-51351711 None:intergenic 35.0%
GAAATACCAGAACAACACTT+TGG - chr2_3:51352010-51352029 Msa0297640:intron 35.0%
AGCTTCAAAATGTGTAACTG+GGG + chr2_3:51352147-51352166 None:intergenic 35.0%
CAGCTTCAAAATGTGTAACT+GGG + chr2_3:51352148-51352167 None:intergenic 35.0%
TCAGCTTCAAAATGTGTAAC+TGG + chr2_3:51352149-51352168 None:intergenic 35.0%
AAAACCGAATGACCAAATTC+AGG - chr2_3:51352438-51352457 Msa0297640:intron 35.0%
AAACCGAATGACCAAATTCA+GGG - chr2_3:51352439-51352458 Msa0297640:intron 35.0%
! TTTAATGGACATGTTGCCTT+TGG - chr2_3:51352583-51352602 Msa0297640:intron 35.0%
!! AAAGGTTGATGTTGTTCCAA+AGG + chr2_3:51352602-51352621 None:intergenic 35.0%
! GGAACAACATCAACCTTTTT+AGG - chr2_3:51352604-51352623 Msa0297640:intron 35.0%
TCCTCCAGGCTATAAAATTA+TGG - chr2_3:51352688-51352707 Msa0297640:intron 35.0%
! ACCATAATTTTATAGCCTGG+AGG + chr2_3:51352692-51352711 None:intergenic 35.0%
TCCAGGCTATAAAATTATGG+TGG - chr2_3:51352691-51352710 Msa0297640:intron 35.0%
! TCCACCATAATTTTATAGCC+TGG + chr2_3:51352695-51352714 None:intergenic 35.0%
TATAACGAACATTCCCAAAC+TGG - chr2_3:51352940-51352959 Msa0297640:CDS 35.0%
GTTACCATCATTACCAGTTT+GGG + chr2_3:51352956-51352975 None:intergenic 35.0%
GAATACAAAGTCAACCTACA+TGG + chr2_3:51352978-51352997 None:intergenic 35.0%
! TGTAGGTTGACTTTGTATTC+TGG - chr2_3:51352978-51352997 Msa0297640:CDS 35.0%
TATGTCCACATAGTGAAATG+TGG - chr2_3:51353040-51353059 Msa0297640:exon 35.0%
GGATAGAATAAGAGTGGTGA+AGG + chr2_3:51349923-51349942 None:intergenic 40.0%
GTACCTTCGTAGAGAGATAT+GGG + chr2_3:51350027-51350046 None:intergenic 40.0%
AGTACCTTCGTAGAGAGATA+TGG + chr2_3:51350028-51350047 None:intergenic 40.0%
ATTGAAAGGAATGGTGAACC+GGG + chr2_3:51350071-51350090 None:intergenic 40.0%
!! GTCCATTGGTATCGGTAATT+TGG + chr2_3:51350173-51350192 None:intergenic 40.0%
TTACATGGGTCCATTGGTAT+CGG + chr2_3:51350181-51350200 None:intergenic 40.0%
AAACACTTACATGGGTCCAT+TGG + chr2_3:51350187-51350206 None:intergenic 40.0%
ATTGACAATTCCAGCTAGTG+TGG - chr2_3:51350342-51350361 Msa0297640:intron 40.0%
TTGACAATTCCAGCTAGTGT+GGG - chr2_3:51350343-51350362 Msa0297640:intron 40.0%
! TTTGAAGAAGTGCATTGCTG+AGG - chr2_3:51350426-51350445 Msa0297640:intron 40.0%
ATGAATTTGTCTGAGTGGTG+AGG - chr2_3:51350648-51350667 Msa0297640:intron 40.0%
TGAATTTGTCTGAGTGGTGA+GGG - chr2_3:51350649-51350668 Msa0297640:intron 40.0%
TGATCCCTGACTATTGCATA+TGG - chr2_3:51350712-51350731 Msa0297640:intron 40.0%
GGAGAAAATTCAATTGGGAG+GGG - chr2_3:51350733-51350752 Msa0297640:intron 40.0%
GAGAAAATTCAATTGGGAGG+GGG - chr2_3:51350734-51350753 Msa0297640:intron 40.0%
AGAAAATTCAATTGGGAGGG+GGG - chr2_3:51350735-51350754 Msa0297640:intron 40.0%
TCATTTAGTAGGATGGAGCT+TGG + chr2_3:51350854-51350873 None:intergenic 40.0%
GAGTCGAACATGGTTTATGA+TGG + chr2_3:51350992-51351011 None:intergenic 40.0%
TGACAAAATGGAGTCGAACA+TGG + chr2_3:51351002-51351021 None:intergenic 40.0%
TTGGCTACTAGATCAGAATG+CGG + chr2_3:51351272-51351291 None:intergenic 40.0%
AGCATATCCTGTCATAGTTC+AGG + chr2_3:51351641-51351660 None:intergenic 40.0%
GAACTATGACAGGATATGCT+TGG - chr2_3:51351641-51351660 Msa0297640:CDS 40.0%
!! CTTTTGGTTGATGCCTCATA+AGG - chr2_3:51351808-51351827 Msa0297640:intron 40.0%
ATCCATACAGCAACCTTATG+AGG + chr2_3:51351824-51351843 None:intergenic 40.0%
AGGTTGCTGTATGGATATAC+TGG - chr2_3:51351828-51351847 Msa0297640:intron 40.0%
!! TACACACCAAAGTGTTGTTC+TGG + chr2_3:51352019-51352038 None:intergenic 40.0%
AAATTGAGGGACCAAAATCG+TGG + chr2_3:51352105-51352124 None:intergenic 40.0%
GCTTCAAAATGTGTAACTGG+GGG + chr2_3:51352146-51352165 None:intergenic 40.0%
GATCCCTGAATTTGGTCATT+CGG + chr2_3:51352445-51352464 None:intergenic 40.0%
GATAGAAAACTGCAGTGTTG+TGG - chr2_3:51352783-51352802 Msa0297640:CDS 40.0%
CTTCGTCAGCTAAATAATCC+TGG + chr2_3:51352833-51352852 None:intergenic 40.0%
!! TTAGGTGGATTGACGCTAAA+TGG - chr2_3:51352874-51352893 Msa0297640:CDS 40.0%
! CATTCCCAAACTGGTAATGA+TGG - chr2_3:51352949-51352968 Msa0297640:CDS 40.0%
GGTTACCATCATTACCAGTT+TGG + chr2_3:51352957-51352976 None:intergenic 40.0%
GGTAATGATGGTAACCATGT+AGG - chr2_3:51352961-51352980 Msa0297640:CDS 40.0%
TCGATCCACATTTCACTATG+TGG + chr2_3:51353048-51353067 None:intergenic 40.0%
CGCGTGAAAAGGAAGGATAA+TGG + chr2_3:51349944-51349963 None:intergenic 45.0%
GTCATTGGAAGAGGAAGAAG+CGG + chr2_3:51349995-51350014 None:intergenic 45.0%
GCTTCTTCCTCTTCCAATGA+CGG - chr2_3:51349994-51350013 Msa0297640:three_prime_UTR 45.0%
GAACCCATATCTCTCTACGA+AGG - chr2_3:51350021-51350040 Msa0297640:exon 45.0%
TCTGGAGAAAGATGATTGGG+TGG + chr2_3:51350141-51350160 None:intergenic 45.0%
GTAATTTGGCGAGCTTCATC+TGG + chr2_3:51350159-51350178 None:intergenic 45.0%
CGCCAAATTACCGATACCAA+TGG - chr2_3:51350168-51350187 Msa0297640:CDS 45.0%
TGTTCATATCCCACACTAGC+TGG + chr2_3:51350355-51350374 None:intergenic 45.0%
AGTTGAGCCACTTAAGCAAG+TGG - chr2_3:51350680-51350699 Msa0297640:intron 45.0%
GAAAATTCAATTGGGAGGGG+GGG - chr2_3:51350736-51350755 Msa0297640:intron 45.0%
CAAAGTTTCGCACACATGGT+GGG + chr2_3:51350794-51350813 None:intergenic 45.0%
ACAAAGTTTCGCACACATGG+TGG + chr2_3:51350795-51350814 None:intergenic 45.0%
AAGGTTACTCTTTCAGCCCA+TGG + chr2_3:51351239-51351258 None:intergenic 45.0%
AGGACTGACATGCAAAGCTT+TGG + chr2_3:51351291-51351310 None:intergenic 45.0%
GTTACTTCCTCAGTTTCGCT+CGG - chr2_3:51351414-51351433 Msa0297640:intron 45.0%
! CCTGTCATAGTTCAGGTTCA+GGG + chr2_3:51351634-51351653 None:intergenic 45.0%
! TCCTGTCATAGTTCAGGTTC+AGG + chr2_3:51351635-51351654 None:intergenic 45.0%
TCAGTTCATCACCCTGAGTT+TGG - chr2_3:51351716-51351735 Msa0297640:intron 45.0%
TGATGTCGAGCACAACTTGT+TGG + chr2_3:51351768-51351787 None:intergenic 45.0%
! CGGATCACGCAGTTTTCTTT+TGG - chr2_3:51351792-51351811 Msa0297640:intron 45.0%
TGCCTCATAAGGTTGCTGTA+TGG - chr2_3:51351819-51351838 Msa0297640:intron 45.0%
GTCTGCTCCCATATGCATTT+GGG + chr2_3:51352412-51352431 None:intergenic 45.0%
TGTCTGCTCCCATATGCATT+TGG + chr2_3:51352413-51352432 None:intergenic 45.0%
GGAGGACGAATGGACATAAT+GGG + chr2_3:51352674-51352693 None:intergenic 45.0%
TGGAGGACGAATGGACATAA+TGG + chr2_3:51352675-51352694 None:intergenic 45.0%
ATTATGTCCATTCGTCCTCC+AGG - chr2_3:51352674-51352693 Msa0297640:intron 45.0%
TTTATAGCCTGGAGGACGAA+TGG + chr2_3:51352684-51352703 None:intergenic 45.0%
ACGTGGGAATGGCATATCTA+GGG + chr2_3:51352740-51352759 None:intergenic 45.0%
TACGTGGGAATGGCATATCT+AGG + chr2_3:51352741-51352760 None:intergenic 45.0%
ATATGCCATTCCCACGTACA+GGG - chr2_3:51352743-51352762 Msa0297640:CDS 45.0%
TGTGGATTCAGTCCACAAAG+AGG - chr2_3:51352801-51352820 Msa0297640:CDS 45.0%
! TTCCTTTTCACGCGCTACTG+CGG - chr2_3:51349950-51349969 Msa0297640:three_prime_UTR 50.0%
TTCAGCTCCGTCATTGGAAG+AGG + chr2_3:51350004-51350023 None:intergenic 50.0%
TATGGGTTCAGCTCCGTCAT+TGG + chr2_3:51350010-51350029 None:intergenic 50.0%
AGCCACTTAAGCAAGTGGTC+AGG - chr2_3:51350685-51350704 Msa0297640:intron 50.0%
GCCACTTAAGCAAGTGGTCA+GGG - chr2_3:51350686-51350705 Msa0297640:intron 50.0%
CCACTTAAGCAAGTGGTCAG+GGG - chr2_3:51350687-51350706 Msa0297640:intron 50.0%
GGCACAAAGTTTCGCACACA+TGG + chr2_3:51350798-51350817 None:intergenic 50.0%
ATATGGACCGAGCGAAACTG+AGG + chr2_3:51351424-51351443 None:intergenic 50.0%
CCCTGAACCTGAACTATGAC+AGG - chr2_3:51351631-51351650 Msa0297640:CDS 50.0%
GACAGGATATGCTTGGGAGT+TGG - chr2_3:51351648-51351667 Msa0297640:CDS 50.0%
GTTGTGCTCGACATCAGCAT+CGG - chr2_3:51351772-51351791 Msa0297640:intron 50.0%
GATATGCCATTCCCACGTAC+AGG - chr2_3:51352742-51352761 Msa0297640:CDS 50.0%
AAAGCTTCGTCCCTGTACGT+GGG + chr2_3:51352756-51352775 None:intergenic 50.0%
TAAAGCTTCGTCCCTGTACG+TGG + chr2_3:51352757-51352776 None:intergenic 50.0%
TCCACAAAGAGGAAGCAACC+AGG - chr2_3:51352812-51352831 Msa0297640:CDS 50.0%
TCCTGGTTGCTTCCTCTTTG+TGG + chr2_3:51352816-51352835 None:intergenic 50.0%
ACGAAGCAAGTCCTAGAGAC+AGG - chr2_3:51352847-51352866 Msa0297640:CDS 50.0%
AAGCAAGTCCTAGAGACAGG+TGG - chr2_3:51352850-51352869 Msa0297640:CDS 50.0%
GTCCTAGAGACAGGTGGTTT+AGG - chr2_3:51352856-51352875 Msa0297640:CDS 50.0%
CACCTAAACCACCTGTCTCT+AGG + chr2_3:51352861-51352880 None:intergenic 50.0%
CTAGAGACAGGTGGTTTAGG+TGG - chr2_3:51352859-51352878 Msa0297640:CDS 50.0%
GGATTGACGCTAAATGGCCA+TGG - chr2_3:51352880-51352899 Msa0297640:CDS 50.0%
GCAGTAGCGCGTGAAAAGGA+AGG + chr2_3:51349951-51349970 None:intergenic 55.0%
GAAAGGAATGGTGAACCGGG+TGG + chr2_3:51350068-51350087 None:intergenic 55.0%
CCCCTGACCACTTGCTTAAG+TGG + chr2_3:51350690-51350709 None:intergenic 55.0%
GAGAACCCACCTTGTGTGGT+TGG - chr2_3:51350758-51350777 Msa0297640:intron 55.0%
ACCCACCTTGTGTGGTTGGA+AGG - chr2_3:51350762-51350781 Msa0297640:intron 55.0%
CCCTTCCAACCACACAAGGT+GGG + chr2_3:51350766-51350785 None:intergenic 55.0%
CCCACCTTGTGTGGTTGGAA+GGG - chr2_3:51350763-51350782 Msa0297640:intron 55.0%
CCACCTTGTGTGGTTGGAAG+GGG - chr2_3:51350764-51350783 Msa0297640:intron 55.0%
TCTCCCCTTCCAACCACACA+AGG + chr2_3:51350770-51350789 None:intergenic 55.0%
TTCGTCCCTGTACGTGGGAA+TGG + chr2_3:51352751-51352770 None:intergenic 55.0%
AGGAATGGTGAACCGGGTGG+CGG + chr2_3:51350065-51350084 None:intergenic 60.0%
AGATGATTGGGTGGCGCGTG+AGG + chr2_3:51350132-51350151 None:intergenic 60.0%
CCCCTTCCAACCACACAAGG+TGG + chr2_3:51350767-51350786 None:intergenic 60.0%
CGCCGCAGTAGCGCGTGAAA+AGG + chr2_3:51349955-51349974 None:intergenic 65.0%
AGAGGAAGAAGCGGCGCGTG+AGG + chr2_3:51349986-51350005 None:intergenic 65.0%
GGGGGAGAACCCACCTTGTG+TGG - chr2_3:51350754-51350773 Msa0297640:intron 65.0%
CTACCATCAGCGCCGCCACC+CGG - chr2_3:51350050-51350069 Msa0297640:CDS 70.0%
TGGGTGGCGCGTGAGGTGCA+CGG + chr2_3:51350125-51350144 None:intergenic 70.0%
! GAACCGGGTGGCGGCGCTGA+TGG + chr2_3:51350056-51350075 None:intergenic 75.0%
GCGCGTGAGGTGCACGGTCG+AGG + chr2_3:51350119-51350138 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 51349750 51353186 51349750 ID=Msa0297640;Name=Msa0297640
chr2_3 mRNA 51349750 51353186 51349750 ID=Msa0297640-mRNA-1;Parent=Msa0297640;Name=Msa0297640-mRNA-1;_AED=0.07;_eAED=0.07;_QI=130|1|1|1|1|1|5|278|311
chr2_3 exon 51349750 51350240 51349750 ID=Msa0297640-mRNA-1:exon:16326;Parent=Msa0297640-mRNA-1
chr2_3 exon 51351083 51351283 51351083 ID=Msa0297640-mRNA-1:exon:16325;Parent=Msa0297640-mRNA-1
chr2_3 exon 51351620 51351712 51351620 ID=Msa0297640-mRNA-1:exon:16324;Parent=Msa0297640-mRNA-1
chr2_3 exon 51352489 51352600 51352489 ID=Msa0297640-mRNA-1:exon:16323;Parent=Msa0297640-mRNA-1
chr2_3 exon 51352740 51353186 51352740 ID=Msa0297640-mRNA-1:exon:16322;Parent=Msa0297640-mRNA-1
chr2_3 five_prime_UTR 51353057 51353186 51353057 ID=Msa0297640-mRNA-1:five_prime_utr;Parent=Msa0297640-mRNA-1
chr2_3 CDS 51352740 51353056 51352740 ID=Msa0297640-mRNA-1:cds;Parent=Msa0297640-mRNA-1
chr2_3 CDS 51352489 51352600 51352489 ID=Msa0297640-mRNA-1:cds;Parent=Msa0297640-mRNA-1
chr2_3 CDS 51351620 51351712 51351620 ID=Msa0297640-mRNA-1:cds;Parent=Msa0297640-mRNA-1
chr2_3 CDS 51351083 51351283 51351083 ID=Msa0297640-mRNA-1:cds;Parent=Msa0297640-mRNA-1
chr2_3 CDS 51350028 51350240 51350028 ID=Msa0297640-mRNA-1:cds;Parent=Msa0297640-mRNA-1
chr2_3 three_prime_UTR 51349750 51350027 51349750 ID=Msa0297640-mRNA-1:three_prime_utr;Parent=Msa0297640-mRNA-1
Gene Sequence

>Msa0297640

ATGGAATTAATTTATCTTCTATGCTCTATAGTCTCCATTTCCTTCACCACTCTTATTCTATCCATTATCCTTCCTTTTCACGCGCTACTGCGGCGTTTAGTAACCTCACGCGCCGCTTCTTCCTCTTCCAATGACGGAGCTGAACCCATATCTCTCTACGAAGGTACTGTCTACCATCAGCGCCGCCACCCGGTTCACCATTCCTTTCAATACAATGTTCGCTACGCACTTATTGACCTCGACCGTGCACCTCACGCGCCACCCAATCATCTTTCTCCAGATGAAGCTCGCCAAATTACCGATACCAATGGACCCATTTTGCTATTGACAATTCCAGCTAGTGTGGGATATGAACAGAATCCATTGAGTGTGTATTATTGCTATGATGTTGAAGACTCTGATACACGTTTGAAGAAGTGCATTGCTGAGGTAACAAATACACCATGGGCTGAAAGAGTAACCTTTATTTTCAATCCGCATTCTGATCTAGTAGCCAAAGCTTTGCATGTCAGTCCTTTTATGGATATGCTTGGGAGTTGGAATATCAAAGCAAGTGATCCTGGAGAAAATCTTAGCATATCAATTTCAGTTCATCACCCTGAGTTTGGAAACTATTTTACTGCTAGTCTGAGAGCCAACAAGTTGTGCTCGACATCAGCATCGGATCACGCAGTTTTCTTTTGGTTGATGCCTCATAAGGTTGCTGTATGGATATACTGGCATGCTATAAAATTATGGTGGAAGAATGTGAAATTTATACAACACCCTAGATATGCCATTCCCACGTACAGGGACGAAGCTTTAATACGAGATAGAAAACTGCAGTGTTGTGGATTCAGTCCACAAAGAGGAAGCAACCAGGATTATTTAGCTGACGAAGCAAGTCCTAGAGACAGGTGGTTTAGGTGGATTGACGCTAAATGGCCATGGTCATAG

Protein sequence

>Msa0297640

MELIYLLCSIVSISFTTLILSIILPFHALLRRLVTSRAASSSSNDGAEPISLYEGTVYHQRRHPVHHSFQYNVRYALIDLDRAPHAPPNHLSPDEARQITDTNGPILLLTIPASVGYEQNPLSVYYCYDVEDSDTRLKKCIAEVTNTPWAERVTFIFNPHSDLVAKALHVSPFMDMLGSWNIKASDPGENLSISISVHHPEFGNYFTASLRANKLCSTSASDHAVFFWLMPHKVAVWIYWHAIKLWWKNVKFIQHPRYAIPTYRDEALIRDRKLQCCGFSPQRGSNQDYLADEASPRDRWFRWIDAKWPWS*