AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1131070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1131070 MtrunA17_Chr4g0055631 97.727 220 5 0 3 222 4 223 1.37e-158 437
Msa1131070 MtrunA17_Chr5g0399741 71.728 191 54 0 8 198 6 196 9.83e-103 296
Msa1131070 MtrunA17_Chr7g0230901 40.598 234 110 3 8 213 6 238 5.30e-58 183
Msa1131070 MtrunA17_Chr5g0399141 39.669 242 115 4 1 213 2 241 4.27e-57 181
Msa1131070 MtrunA17_Chr4g0012521 40.598 234 110 3 8 213 6 238 6.79e-57 180
Msa1131070 MtrunA17_Chr4g0056231 39.149 235 113 3 8 213 7 240 3.86e-55 176
Msa1131070 MtrunA17_Chr4g0066671 53.788 132 58 1 1 132 1 129 1.48e-41 143
Msa1131070 MtrunA17_Chr4g0012141 41.111 180 95 2 8 183 18 190 6.47e-40 135
Msa1131070 MtrunA17_Chr4g0012151 40.571 175 100 2 8 182 24 194 2.17e-36 127
Msa1131070 MtrunA17_Chr1g0191261 48.780 123 63 0 8 130 6 128 8.66e-33 122
Msa1131070 MtrunA17_Chr4g0012291 45.902 122 66 0 8 129 23 144 2.29e-31 115
Msa1131070 MtrunA17_Chr4g0012091 37.342 158 95 2 32 185 16 173 2.31e-23 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1131070 AT5G47180.1 59.276 221 86 3 1 219 1 219 7.06e-92 269
Msa1131070 AT5G47180.2 59.276 221 86 3 1 219 1 219 7.06e-92 269
Msa1131070 AT2G45140.2 42.157 204 108 2 4 197 1 204 8.30e-53 170
Msa1131070 AT2G45140.1 39.367 221 107 3 4 197 1 221 4.87e-49 160
Msa1131070 AT4G00170.1 40.336 238 114 6 1 212 1 236 1.33e-47 157
Msa1131070 AT3G60600.1 37.788 217 108 4 8 197 22 238 7.56e-44 148
Msa1131070 AT3G60600.2 40.361 166 99 0 8 173 22 187 4.56e-39 134
Msa1131070 AT3G60600.3 48.413 126 65 0 8 133 22 147 2.35e-38 133
Msa1131070 AT4G00170.2 39.234 209 101 5 30 212 1 209 7.20e-38 131
Msa1131070 AT1G51270.13 41.958 143 83 0 4 146 1 143 7.37e-37 132
Msa1131070 AT1G51270.12 41.958 143 83 0 4 146 1 143 7.37e-37 132
Msa1131070 AT1G51270.14 41.958 143 83 0 4 146 1 143 7.37e-37 132
Msa1131070 AT1G51270.11 41.958 143 83 0 4 146 1 143 7.37e-37 132
Msa1131070 AT1G51270.5 41.844 141 82 0 6 146 4 144 4.00e-36 130
Msa1131070 AT1G51270.8 41.958 143 83 0 4 146 172 314 7.93e-36 132
Msa1131070 AT1G51270.8 37.313 134 84 0 6 139 4 137 1.95e-29 115
Msa1131070 AT1G51270.2 41.958 143 83 0 4 146 172 314 7.93e-36 132
Msa1131070 AT1G51270.2 37.313 134 84 0 6 139 4 137 1.95e-29 115
Msa1131070 AT1G51270.15 41.958 143 83 0 4 146 1 143 9.20e-36 131
Msa1131070 AT1G51270.1 41.958 143 83 0 4 146 172 314 1.82e-35 132
Msa1131070 AT1G51270.1 37.313 134 84 0 6 139 4 137 3.28e-29 114
Msa1131070 AT1G51270.9 41.958 143 83 0 4 146 124 266 2.06e-35 132
Msa1131070 AT1G51270.9 37.500 88 55 0 52 139 2 89 1.93e-16 77.8
Msa1131070 AT1G51270.6 41.958 143 83 0 4 146 124 266 2.06e-35 132
Msa1131070 AT1G51270.6 37.500 88 55 0 52 139 2 89 1.93e-16 77.8
Msa1131070 AT1G51270.7 41.958 143 83 0 4 146 124 266 2.06e-35 132
Msa1131070 AT1G51270.7 37.500 88 55 0 52 139 2 89 1.93e-16 77.8
Msa1131070 AT1G51270.10 41.958 143 83 0 4 146 124 266 2.06e-35 132
Msa1131070 AT1G51270.10 37.500 88 55 0 52 139 2 89 1.93e-16 77.8
Msa1131070 AT1G51270.3 41.958 143 83 0 4 146 172 314 3.11e-35 132
Msa1131070 AT1G51270.3 37.313 134 84 0 6 139 4 137 4.56e-29 114
Msa1131070 AT2G23830.1 44.531 128 71 0 5 132 3 130 2.40e-33 117
Msa1131070 AT1G08820.1 46.154 130 69 1 8 136 5 134 7.27e-33 122
Msa1131070 AT1G08820.5 46.154 130 69 1 8 136 5 134 7.27e-33 122
Msa1131070 AT1G08820.3 46.154 130 69 1 8 136 5 134 7.27e-33 122
Msa1131070 AT1G08820.4 46.154 130 69 1 8 136 5 134 7.27e-33 122
Msa1131070 AT1G08820.2 46.154 130 69 1 8 136 5 134 7.27e-33 122
Msa1131070 AT1G51270.4 39.189 74 45 0 73 146 1 74 8.01e-12 64.3

Find 68 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATGTTTGTGGGCCTTAT+TGG 0.184699 7_3:-83417352 Msa1131070:CDS
CTTCACCTTTGCCATGTTTG+TGG 0.310218 7_3:-83417362 Msa1131070:CDS
CCCTTCGCCATGACTACTAT+TGG 0.321654 7_3:-83420642 Msa1131070:exon
TTCACCTTTGCCATGTTTGT+GGG 0.330121 7_3:-83417361 Msa1131070:CDS
TTCCTCCTTCAATTGTTGTA+AGG 0.345811 7_3:+83417818 None:intergenic
GGCCTTATTGGATTCTTGTT+TGG 0.353608 7_3:-83417340 Msa1131070:CDS
GAGGATATTCTCGTTGGGCT+TGG 0.386515 7_3:+83418965 None:intergenic
ACGAAGCTCGGGAGGATTGA+TGG 0.392472 7_3:+83420605 None:intergenic
AGATCATCAACATTGGTGTT+TGG 0.401970 7_3:+83418892 None:intergenic
ACAAAATCTTGATACTTCTT+CGG 0.415832 7_3:-83418657 Msa1131070:intron
GATATTCTCGTTGGGCTTGG+AGG 0.421372 7_3:+83418968 None:intergenic
AACCAAACAAGAATCCAATA+AGG 0.425340 7_3:+83417338 None:intergenic
TTATCTCTGCATTGCATGCC+AGG 0.428776 7_3:+83418943 None:intergenic
AGGGAATCGTGCATCATTAG+AGG 0.428838 7_3:-83419572 Msa1131070:intron
TGTTGTGTGCCCGCTGTTTG+TGG 0.433233 7_3:+83420811 None:intergenic
GAAACAAACACAACAAAGAC+GGG 0.433641 7_3:+83420836 None:intergenic
GGATGTATCACACCAGTGTT+AGG 0.447168 7_3:+83419596 None:intergenic
GCGGCATCTGCAACAGGAAC+TGG 0.455063 7_3:-83417772 Msa1131070:intron
ACAAGCGCGGCATCTGCAAC+AGG 0.465076 7_3:-83417778 Msa1131070:CDS
AAGAAATCGTAGAAGTGATC+CGG 0.472414 7_3:-83417392 Msa1131070:CDS
TTGCAGTTTAATAAGGATAG+TGG 0.473047 7_3:-83418773 Msa1131070:intron
GTTCATGTTACCAGTTGAGT+TGG 0.474172 7_3:-83419836 Msa1131070:intron
ATGAGCAGGACATGCTGAAA+AGG 0.479286 7_3:-83417417 Msa1131070:intron
GCCAGGAGGATATTCTCGTT+GGG 0.485690 7_3:+83418960 None:intergenic
ACACTGGTGTGATACATCCT+AGG 0.492945 7_3:-83419592 Msa1131070:CDS
TGCCAGGAGGATATTCTCGT+TGG 0.494034 7_3:+83418959 None:intergenic
TCATCAGATTCAGAGCGGTT+CGG 0.505626 7_3:-83420890 None:intergenic
GTGCTTCCTTGAGGTGAGGT+AGG 0.512970 7_3:+83418707 None:intergenic
TCCAATAAGGCCCACAAACA+TGG 0.517835 7_3:+83417351 None:intergenic
AAACATAATAAGCAAAGTAT+TGG 0.518344 7_3:-83420776 Msa1131070:intron
GCCCAACGAGAATATCCTCC+TGG 0.527180 7_3:-83418961 Msa1131070:CDS
TCAAGCCTTACAACAATTGA+AGG 0.530907 7_3:-83417823 Msa1131070:CDS
CATACATTGAAAACGAAGCT+CGG 0.539797 7_3:+83420593 None:intergenic
TGAATTTCCAATAGTAGTCA+TGG 0.542130 7_3:+83420635 None:intergenic
CACAAACATGGCAAAGGTGA+AGG 0.543703 7_3:+83417363 None:intergenic
TTGTTTCCGCCACAAACAGC+GGG 0.550499 7_3:-83420820 Msa1131070:five_prime_UTR
ATATTCTCGTTGGGCTTGGA+GGG 0.552192 7_3:+83418969 None:intergenic
ATACATTGAAAACGAAGCTC+GGG 0.552814 7_3:+83420594 None:intergenic
TCCAATAGTAGTCATGGCGA+AGG 0.560783 7_3:+83420641 None:intergenic
GGAAACAAACACAACAAAGA+CGG 0.561138 7_3:+83420835 None:intergenic
TCATCTCTTGTGCTTCCTTG+AGG 0.563962 7_3:+83418698 None:intergenic
CAATGTTGATGATCTTCCGC+TGG 0.570679 7_3:-83418884 Msa1131070:CDS
AGAAATCGTAGAAGTGATCC+GGG 0.571770 7_3:-83417391 Msa1131070:CDS
TGTTACCAGTTGAGTTGGAG+AGG 0.575278 7_3:-83419831 Msa1131070:intron
CTAATGATGCACGATTCCCT+AGG 0.584489 7_3:+83419575 None:intergenic
TTTGTTTCCGCCACAAACAG+CGG 0.585704 7_3:-83420821 Msa1131070:five_prime_UTR
GCAAAGGTGAAGGAGAAGCC+CGG 0.586085 7_3:+83417373 None:intergenic
TCTTGTGCTTCCTTGAGGTG+AGG 0.587034 7_3:+83418703 None:intergenic
TCTCATACAAACTACAACAG+TGG 0.601386 7_3:-83418917 Msa1131070:CDS
GTCTCTCCTACCTCACCTCA+AGG 0.604827 7_3:-83418713 Msa1131070:CDS
CATTGAAAACGAAGCTCGGG+AGG 0.607960 7_3:+83420597 None:intergenic
GGTCGTACAAAGTACTTAGA+CGG 0.609617 7_3:+83419617 None:intergenic
AGTTTAATAAGGATAGTGGA+AGG 0.618342 7_3:-83418769 Msa1131070:CDS
AAAGTACTTAGACGGTGAAG+TGG 0.620351 7_3:+83419625 None:intergenic
CAGCGGAAGATCATCAACAT+TGG 0.627209 7_3:+83418885 None:intergenic
TACTTTGTACGACCTAACAC+TGG 0.629880 7_3:-83419608 Msa1131070:CDS
TGTGTGCCCGCTGTTTGTGG+CGG 0.634754 7_3:+83420814 None:intergenic
AGCTCTCTTACAGTATCCAG+CGG 0.635233 7_3:+83418868 None:intergenic
CACTGGTGTGATACATCCTA+GGG 0.636942 7_3:-83419591 Msa1131070:CDS
CCAATAGTAGTCATGGCGAA+GGG 0.639429 7_3:+83420642 None:intergenic
ATGCCGCGCTTGTCTGACAG+AGG 0.647048 7_3:+83417788 None:intergenic
ACAGAATGAAATCATTGTGT+AGG 0.648495 7_3:+83417286 None:intergenic
GAATGAAATCATTGTGTAGG+TGG 0.650478 7_3:+83417289 None:intergenic
AAGGCCCACAAACATGGCAA+AGG 0.655384 7_3:+83417357 None:intergenic
AAACAAACACAACAAAGACG+GGG 0.659895 7_3:+83420837 None:intergenic
AGCCTTACAACAATTGAAGG+AGG 0.661559 7_3:-83417820 Msa1131070:CDS
ATGCCTCTGTCAGACAAGCG+CGG 0.683892 7_3:-83417791 Msa1131070:CDS
TCTCTGCATTGCATGCCAGG+AGG 0.728147 7_3:+83418946 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTTTAAGTTTTGTTAT+GGG + chr7_3:83417314-83417333 None:intergenic 15.0%
!!! TTTGTTTTTAAGTTTTGTTA+TGG + chr7_3:83417315-83417334 None:intergenic 15.0%
!! AGAATAAAAGAGAAATTAAA+TGG + chr7_3:83417498-83417517 None:intergenic 15.0%
!!! TTTCAAATTTTTACTATACA+TGG + chr7_3:83417964-83417983 None:intergenic 15.0%
!!! ACATTTTTCATTTACATAAA+GGG + chr7_3:83418188-83418207 None:intergenic 15.0%
!!! AACATTTTTCATTTACATAA+AGG + chr7_3:83418189-83418208 None:intergenic 15.0%
!! TAAATTAATGTATACTTCTT+GGG + chr7_3:83418782-83418801 None:intergenic 15.0%
!! TTAAATTAATGTATACTTCT+TGG + chr7_3:83418783-83418802 None:intergenic 15.0%
!! TGATTAAATAGATCTATATT+AGG - chr7_3:83418826-83418845 Msa1131070:intron 15.0%
!! GATTAAATAGATCTATATTA+GGG - chr7_3:83418827-83418846 Msa1131070:intron 15.0%
!!! TTCATTTTTTCATTACAAAA+TGG - chr7_3:83418880-83418899 Msa1131070:CDS 15.0%
!!! TTTTGTGATTAAAAATGAAT+AGG - chr7_3:83418938-83418957 Msa1131070:CDS 15.0%
!! TTGAAAATAAAAATTGATCA+AGG - chr7_3:83419364-83419383 Msa1131070:intron 15.0%
!! AAACATAATAAGCAAAGTAT+TGG - chr7_3:83417399-83417418 Msa1131070:CDS 20.0%
!! AATAACACTAACATAGATAA+TGG + chr7_3:83417675-83417694 None:intergenic 20.0%
!! GTTATTATTAATCACAGTTT+AGG - chr7_3:83417689-83417708 Msa1131070:intron 20.0%
!!! GAAACATTTTTCATAAGTAT+CGG - chr7_3:83418080-83418099 Msa1131070:intron 20.0%
!! ATTTATATCCAATTCTTATG+TGG - chr7_3:83418306-83418325 Msa1131070:intron 20.0%
!!! CAAACTTATTCTTTTTGTAA+AGG - chr7_3:83418451-83418470 Msa1131070:intron 20.0%
!!! TTGATAATTTGAATTGTTGT+TGG - chr7_3:83418677-83418696 Msa1131070:CDS 20.0%
!!! TGATAATTTGAATTGTTGTT+GGG - chr7_3:83418678-83418697 Msa1131070:CDS 20.0%
!! ATAATATTACCAAATTTGAG+AGG + chr7_3:83419613-83419632 None:intergenic 20.0%
!!! AATTAAGTAATGGATTTGTA+AGG + chr7_3:83420295-83420314 None:intergenic 20.0%
!! GTTCAATCTAAATTAAGTAA+TGG + chr7_3:83420305-83420324 None:intergenic 20.0%
!! ATTTGTGTTAAGATTTGATT+TGG - chr7_3:83420470-83420489 Msa1131070:intron 20.0%
!! TCAATATGAATTATGATTTG+AGG - chr7_3:83420627-83420646 Msa1131070:CDS 20.0%
! AAAACTAAAGCAATTCTCAA+GGG + chr7_3:83417886-83417905 None:intergenic 25.0%
!! TTTCAAACTTTTACCATGAA+TGG + chr7_3:83418004-83418023 None:intergenic 25.0%
! TAGTATAACCACATAAGAAT+TGG + chr7_3:83418317-83418336 None:intergenic 25.0%
! TACAAATGAATACGTCTAAA+AGG + chr7_3:83418745-83418764 None:intergenic 25.0%
! TATTCATTTGTACAAAGTAC+TGG - chr7_3:83418753-83418772 Msa1131070:CDS 25.0%
!! CATATTTTCTTGAACCAAAT+AGG + chr7_3:83418853-83418872 None:intergenic 25.0%
! TCATTACAAAATGGCTATTT+AGG - chr7_3:83418889-83418908 Msa1131070:CDS 25.0%
!! TTTTTGCTTGCAGTTTAATA+AGG - chr7_3:83419395-83419414 Msa1131070:intron 25.0%
! ACAAAATCTTGATACTTCTT+CGG - chr7_3:83419518-83419537 Msa1131070:intron 25.0%
! ACTTATAACTGATATCTCAA+AGG + chr7_3:83419575-83419594 None:intergenic 25.0%
! GAAAGAAAACTCTAATTCTT+GGG - chr7_3:83419831-83419850 Msa1131070:intron 25.0%
!! AATTTTACTCTTCATTTGAC+TGG - chr7_3:83420055-83420074 Msa1131070:intron 25.0%
! CTCAATCAGTATATAATCAA+TGG + chr7_3:83420081-83420100 None:intergenic 25.0%
!! CATTGATTATATACTGATTG+AGG - chr7_3:83420079-83420098 Msa1131070:intron 25.0%
! AAGTTTAGTCATGATATACT+TGG + chr7_3:83420506-83420525 None:intergenic 25.0%
!!! AGTTTTGGAATTTTGTTATG+AGG + chr7_3:83420570-83420589 None:intergenic 25.0%
! ACAAAATTCCAAAACTTAGA+AGG - chr7_3:83420574-83420593 Msa1131070:intron 25.0%
! CAAAATTCCAAAACTTAGAA+GGG - chr7_3:83420575-83420594 Msa1131070:intron 25.0%
!! TAATTTTCCCTTCTAAGTTT+TGG + chr7_3:83420585-83420604 None:intergenic 25.0%
! AGATGACTTATATACAATAC+AGG - chr7_3:83420604-83420623 Msa1131070:CDS 25.0%
TGAATTTCCAATAGTAGTCA+TGG + chr7_3:83417543-83417562 None:intergenic 30.0%
TTTCTTCTTAACCACTCTTT+AGG - chr7_3:83417619-83417638 Msa1131070:intron 30.0%
! TAATTTGTCCTCGAATCATA+TGG - chr7_3:83417774-83417793 Msa1131070:CDS 30.0%
CAGTTACTTATAGCAGAAAT+TGG - chr7_3:83417859-83417878 Msa1131070:intron 30.0%
GAAAACTAAAGCAATTCTCA+AGG + chr7_3:83417887-83417906 None:intergenic 30.0%
TATTAACATGACACCATTCA+TGG - chr7_3:83417988-83418007 Msa1131070:intron 30.0%
!! AGAGTACTTCATTGCTTTTA+AGG - chr7_3:83418402-83418421 Msa1131070:intron 30.0%
! TTTTGTAAAGGCTTTTATGC+CGG - chr7_3:83418463-83418482 Msa1131070:intron 30.0%
AAAGCAAAATAACATGACAG+TGG + chr7_3:83418517-83418536 None:intergenic 30.0%
!!! CATGTTATTTTGCTTTTGCT+AGG - chr7_3:83418521-83418540 Msa1131070:intron 30.0%
!! TGCATTTTGTGAGCTTTAAT+CGG + chr7_3:83419034-83419053 None:intergenic 30.0%
TAGATGCTAATACTACACAA+TGG + chr7_3:83419155-83419174 None:intergenic 30.0%
TTGCAGTTTAATAAGGATAG+TGG - chr7_3:83419402-83419421 Msa1131070:intron 30.0%
!! AGTTTAATAAGGATAGTGGA+AGG - chr7_3:83419406-83419425 Msa1131070:intron 30.0%
!!! AGAAGTATCAAGATTTTGTG+TGG + chr7_3:83419517-83419536 None:intergenic 30.0%
TTTATGCTTCCTCTCAAATT+TGG - chr7_3:83419601-83419620 Msa1131070:CDS 30.0%
AAGCCATAGAAATGAGATAA+TGG - chr7_3:83419710-83419729 Msa1131070:intron 30.0%
AGCCATAGAAATGAGATAAT+GGG - chr7_3:83419711-83419730 Msa1131070:intron 30.0%
!! ATGAGATAATGGGGTTTATT+TGG - chr7_3:83419721-83419740 Msa1131070:intron 30.0%
!! ACTTTCTTTACTTTTCCACT+TGG + chr7_3:83419756-83419775 None:intergenic 30.0%
ATCACTCTCATCTTTACAAT+AGG - chr7_3:83419789-83419808 Msa1131070:CDS 30.0%
! AATTAGAGTTTTCTTTCCCA+GGG + chr7_3:83419828-83419847 None:intergenic 30.0%
GGAAAGAAAACTCTAATTCT+TGG - chr7_3:83419830-83419849 Msa1131070:intron 30.0%
!! TAATTCTTGGGTTTTATGAC+AGG - chr7_3:83419843-83419862 Msa1131070:intron 30.0%
TCAAGTAACATACACATTAG+TGG + chr7_3:83419902-83419921 None:intergenic 30.0%
! ACTAATGTGTATGTTACTTG+AGG - chr7_3:83419901-83419920 Msa1131070:intron 30.0%
AACTTAGGATATAGCAGATA+TGG - chr7_3:83419931-83419950 Msa1131070:intron 30.0%
ACTTAGGATATAGCAGATAT+GGG - chr7_3:83419932-83419951 Msa1131070:intron 30.0%
!! TTGGTTTGGGATTATTTGTT+AGG - chr7_3:83420022-83420041 Msa1131070:intron 30.0%
! TGGTTTGGGATTATTTGTTA+GGG - chr7_3:83420023-83420042 Msa1131070:intron 30.0%
! TTATATACTGATTGAGGTGT+AGG - chr7_3:83420085-83420104 Msa1131070:intron 30.0%
! TATATACTGATTGAGGTGTA+GGG - chr7_3:83420086-83420105 Msa1131070:intron 30.0%
GGACATAAATTATAGTCACA+CGG - chr7_3:83420164-83420183 Msa1131070:intron 30.0%
!! AATTTTGTTATGAGGTAGAG+TGG + chr7_3:83420562-83420581 None:intergenic 30.0%
ATCAAGAAAACATGTGGATT+TGG + chr7_3:83420740-83420759 None:intergenic 30.0%
AACCAAACAAGAATCCAATA+AGG + chr7_3:83420840-83420859 None:intergenic 30.0%
AAACAAACACAACAAAGACG+GGG + chr7_3:83417341-83417360 None:intergenic 35.0%
GAAACAAACACAACAAAGAC+GGG + chr7_3:83417342-83417361 None:intergenic 35.0%
GGAAACAAACACAACAAAGA+CGG + chr7_3:83417343-83417362 None:intergenic 35.0%
TTGATATCGCAACGAGAAAA+GGG + chr7_3:83417458-83417477 None:intergenic 35.0%
TTTGATATCGCAACGAGAAA+AGG + chr7_3:83417459-83417478 None:intergenic 35.0%
ATACATTGAAAACGAAGCTC+GGG + chr7_3:83417584-83417603 None:intergenic 35.0%
CATACATTGAAAACGAAGCT+CGG + chr7_3:83417585-83417604 None:intergenic 35.0%
ATATTATACTTCTGTGCCGT+AGG - chr7_3:83417751-83417770 Msa1131070:intron 35.0%
ATTCGAGGACAAATTACCTA+CGG + chr7_3:83417770-83417789 None:intergenic 35.0%
TTTCTGTTCCATATGATTCG+AGG + chr7_3:83417785-83417804 None:intergenic 35.0%
CTAAAAGTAATCATGTGTGC+AGG - chr7_3:83418034-83418053 Msa1131070:intron 35.0%
TAAAGGGTGAAACGAAAATG+CGG + chr7_3:83418172-83418191 None:intergenic 35.0%
AGAATAAGTTTGTCCCTGTA+AGG + chr7_3:83418443-83418462 None:intergenic 35.0%
TAAAAGGAAAAGAGACCCTT+CGG + chr7_3:83418729-83418748 None:intergenic 35.0%
GATCTATATTAGGGCCTATT+TGG - chr7_3:83418836-83418855 Msa1131070:intron 35.0%
TTTCTGACCTTAAATCTACG+AGG - chr7_3:83418978-83418997 Msa1131070:intron 35.0%
TTCAACTCCTCGTAGATTTA+AGG + chr7_3:83418988-83419007 None:intergenic 35.0%
TTTCCACATCAATGAGAACT+AGG - chr7_3:83419060-83419079 Msa1131070:intron 35.0%
! TTTCCTAGTTCTCATTGATG+TGG + chr7_3:83419066-83419085 None:intergenic 35.0%
TCTCATACAAACTACAACAG+TGG - chr7_3:83419258-83419277 Msa1131070:intron 35.0%
! AGATCATCAACATTGGTGTT+TGG + chr7_3:83419286-83419305 None:intergenic 35.0%
!!! AGCTAATAACCTTGTTTTGC+AGG - chr7_3:83419326-83419345 Msa1131070:intron 35.0%
AGAAATGATCCTGCAAAACA+AGG + chr7_3:83419338-83419357 None:intergenic 35.0%
AACTGATATCTCAAAGGAGA+AGG + chr7_3:83419569-83419588 None:intergenic 35.0%
CAAGAATCATCATCACATCT+GGG - chr7_3:83419641-83419660 Msa1131070:intron 35.0%
GCCATAGAAATGAGATAATG+GGG - chr7_3:83419712-83419731 Msa1131070:intron 35.0%
ACCCCATTATCTCATTTCTA+TGG + chr7_3:83419716-83419735 None:intergenic 35.0%
! GAATTAGAGTTTTCTTTCCC+AGG + chr7_3:83419829-83419848 None:intergenic 35.0%
GTAACATACACATTAGTGGT+CGG + chr7_3:83419898-83419917 None:intergenic 35.0%
ACTTGAGGAAAACAGAACTT+AGG - chr7_3:83419916-83419935 Msa1131070:intron 35.0%
! TTTTTCATGTGATGCATTCC+AGG - chr7_3:83419966-83419985 Msa1131070:intron 35.0%
! TTTGAGACCAAACTTATCCT+AGG + chr7_3:83420002-83420021 None:intergenic 35.0%
GGATAAGTTTGGTCTCAAAT+TGG - chr7_3:83420003-83420022 Msa1131070:intron 35.0%
AGTTTGGTCTCAAATTGGTT+TGG - chr7_3:83420008-83420027 Msa1131070:intron 35.0%
! GTTTGGTCTCAAATTGGTTT+GGG - chr7_3:83420009-83420028 Msa1131070:intron 35.0%
!!! TTTTTTATGACCTTAGCAGC+TGG - chr7_3:83420143-83420162 Msa1131070:intron 35.0%
TAATTTATGTCCAGCTGCTA+AGG + chr7_3:83420156-83420175 None:intergenic 35.0%
AAGGCTTGACTCTTCAAATA+CGG + chr7_3:83420341-83420360 None:intergenic 35.0%
TCAAGCCTTACAACAATTGA+AGG - chr7_3:83420352-83420371 Msa1131070:intron 35.0%
TTCCTCCTTCAATTGTTGTA+AGG + chr7_3:83420360-83420379 None:intergenic 35.0%
AAGAAATCGTAGAAGTGATC+CGG - chr7_3:83420783-83420802 Msa1131070:five_prime_UTR 35.0%
AATTGATCGCACCTAAAGAG+TGG + chr7_3:83417633-83417652 None:intergenic 40.0%
AACCGAGTACTCACAAAAGT+AGG - chr7_3:83417834-83417853 Msa1131070:intron 40.0%
!! TGCCTACTTTTGTGAGTACT+CGG + chr7_3:83417839-83417858 None:intergenic 40.0%
! CATGGTGTCAATGTCATGTT+CGG + chr7_3:83417946-83417965 None:intergenic 40.0%
GTTCATGTTACCAGTTGAGT+TGG - chr7_3:83418339-83418358 Msa1131070:intron 40.0%
!! ACCCTTTTAACTCTCCTTAC+AGG - chr7_3:83418426-83418445 Msa1131070:intron 40.0%
CCCTGTAAGGAGAGTTAAAA+GGG + chr7_3:83418430-83418449 None:intergenic 40.0%
!! CCCTTTTAACTCTCCTTACA+GGG - chr7_3:83418427-83418446 Msa1131070:intron 40.0%
TCCCTGTAAGGAGAGTTAAA+AGG + chr7_3:83418431-83418450 None:intergenic 40.0%
! AAAGTACTTAGACGGTGAAG+TGG + chr7_3:83418553-83418572 None:intergenic 40.0%
! GGTCGTACAAAGTACTTAGA+CGG + chr7_3:83418561-83418580 None:intergenic 40.0%
TACTTTGTACGACCTAACAC+TGG - chr7_3:83418567-83418586 Msa1131070:intron 40.0%
GGATGTTGAACAACTGAAGT+GGG - chr7_3:83418699-83418718 Msa1131070:CDS 40.0%
AAGCAGATAGTACACATGTC+TGG + chr7_3:83419110-83419129 None:intergenic 40.0%
TCTCAAAGGAGAAGGTGAAT+GGG + chr7_3:83419561-83419580 None:intergenic 40.0%
ATCTCAAAGGAGAAGGTGAA+TGG + chr7_3:83419562-83419581 None:intergenic 40.0%
GCAAGAATCATCATCACATC+TGG - chr7_3:83419640-83419659 Msa1131070:intron 40.0%
CTGACGCAAGATATTTGTGA+CGG - chr7_3:83419684-83419703 Msa1131070:intron 40.0%
! TGGGGTTTATTTGGCTTACT+TGG - chr7_3:83419730-83419749 Msa1131070:intron 40.0%
!! GGTTTTATGACAGGTTGCAA+TGG - chr7_3:83419852-83419871 Msa1131070:intron 40.0%
AGATTCGCCTAGGATAAGTT+TGG - chr7_3:83419992-83420011 Msa1131070:intron 40.0%
TAGAGACGACTACTCAAACT+CGG + chr7_3:83420233-83420252 None:intergenic 40.0%
AGCCTTACAACAATTGAAGG+AGG - chr7_3:83420355-83420374 Msa1131070:intron 40.0%
CTGCTCATCAAGAAAACATG+TGG + chr7_3:83420746-83420765 None:intergenic 40.0%
! CACATGTTTTCTTGATGAGC+AGG - chr7_3:83420744-83420763 Msa1131070:intron 40.0%
AGAAATCGTAGAAGTGATCC+GGG - chr7_3:83420784-83420803 Msa1131070:five_prime_UTR 40.0%
TTCACCTTTGCCATGTTTGT+GGG - chr7_3:83420814-83420833 Msa1131070:five_prime_UTR 40.0%
!! GGCCTTATTGGATTCTTGTT+TGG - chr7_3:83420835-83420854 Msa1131070:five_prime_UTR 40.0%
TTTGTTTCCGCCACAAACAG+CGG - chr7_3:83417354-83417373 Msa1131070:CDS 45.0%
CCAATAGTAGTCATGGCGAA+GGG + chr7_3:83417536-83417555 None:intergenic 45.0%
TCCAATAGTAGTCATGGCGA+AGG + chr7_3:83417537-83417556 None:intergenic 45.0%
!! TGTTACCAGTTGAGTTGGAG+AGG - chr7_3:83418344-83418363 Msa1131070:intron 45.0%
TATGCCGGATCTTTAGTGCA+TGG - chr7_3:83418478-83418497 Msa1131070:intron 45.0%
GAAGCCATGCACTAAAGATC+CGG + chr7_3:83418485-83418504 None:intergenic 45.0%
GGATGTATCACACCAGTGTT+AGG + chr7_3:83418582-83418601 None:intergenic 45.0%
ACACTGGTGTGATACATCCT+AGG - chr7_3:83418583-83418602 Msa1131070:intron 45.0%
CACTGGTGTGATACATCCTA+GGG - chr7_3:83418584-83418603 Msa1131070:intron 45.0%
CTAATGATGCACGATTCCCT+AGG + chr7_3:83418603-83418622 None:intergenic 45.0%
AGGGAATCGTGCATCATTAG+AGG - chr7_3:83418603-83418622 Msa1131070:intron 45.0%
GGGATGTTGAACAACTGAAG+TGG - chr7_3:83418698-83418717 Msa1131070:CDS 45.0%
ATATTCTCGTTGGGCTTGGA+GGG + chr7_3:83419209-83419228 None:intergenic 45.0%
TTATCTCTGCATTGCATGCC+AGG + chr7_3:83419235-83419254 None:intergenic 45.0%
CAGCGGAAGATCATCAACAT+TGG + chr7_3:83419293-83419312 None:intergenic 45.0%
!! CAATGTTGATGATCTTCCGC+TGG - chr7_3:83419291-83419310 Msa1131070:intron 45.0%
AGCTCTCTTACAGTATCCAG+CGG + chr7_3:83419310-83419329 None:intergenic 45.0%
TCATCTCTTGTGCTTCCTTG+AGG + chr7_3:83419480-83419499 None:intergenic 45.0%
ATCATCATCACATCTGGGCA+TGG - chr7_3:83419646-83419665 Msa1131070:intron 45.0%
! ATTTGGCTTACTTGGCCAAG+TGG - chr7_3:83419738-83419757 Msa1131070:intron 45.0%
! GTTTTCTTTCCCAGGGAATC+AGG + chr7_3:83419821-83419840 None:intergenic 45.0%
TGGTCGGAACATTCACAAGA+TGG + chr7_3:83419882-83419901 None:intergenic 45.0%
ATGAGCAGGACATGCTGAAA+AGG - chr7_3:83420758-83420777 Msa1131070:intron 45.0%
CACAAACATGGCAAAGGTGA+AGG + chr7_3:83420815-83420834 None:intergenic 45.0%
CTTCACCTTTGCCATGTTTG+TGG - chr7_3:83420813-83420832 Msa1131070:five_prime_UTR 45.0%
TCCAATAAGGCCCACAAACA+TGG + chr7_3:83420827-83420846 None:intergenic 45.0%
!! TATAAATAATGAAAATATAT+GGG + chr7_3:83418293-83418312 None:intergenic 5.0%
!! ATATAAATAATGAAAATATA+TGG + chr7_3:83418294-83418313 None:intergenic 5.0%
TTGTTTCCGCCACAAACAGC+GGG - chr7_3:83417355-83417374 Msa1131070:CDS 50.0%
CCCTTCGCCATGACTACTAT+TGG - chr7_3:83417533-83417552 Msa1131070:intron 50.0%
CATTGAAAACGAAGCTCGGG+AGG + chr7_3:83417581-83417600 None:intergenic 50.0%
CAATGTCATGTTCGGCTGTG+TGG + chr7_3:83417938-83417957 None:intergenic 50.0%
GATTGCCTCTCCAACTCAAC+TGG + chr7_3:83418352-83418371 None:intergenic 50.0%
GATATTCTCGTTGGGCTTGG+AGG + chr7_3:83419210-83419229 None:intergenic 50.0%
GAGGATATTCTCGTTGGGCT+TGG + chr7_3:83419213-83419232 None:intergenic 50.0%
GCCAGGAGGATATTCTCGTT+GGG + chr7_3:83419218-83419237 None:intergenic 50.0%
TGCCAGGAGGATATTCTCGT+TGG + chr7_3:83419219-83419238 None:intergenic 50.0%
TCTTGTGCTTCCTTGAGGTG+AGG + chr7_3:83419475-83419494 None:intergenic 50.0%
TAGGCTATGTCCTGATTCCC+TGG - chr7_3:83419808-83419827 Msa1131070:CDS 50.0%
AGGCTATGTCCTGATTCCCT+GGG - chr7_3:83419809-83419828 Msa1131070:CDS 50.0%
TGATTGAGGTGTAGGGCTTC+TGG - chr7_3:83420093-83420112 Msa1131070:intron 50.0%
AAGGCCCACAAACATGGCAA+AGG + chr7_3:83420821-83420840 None:intergenic 50.0%
! GCCATGTTTGTGGGCCTTAT+TGG - chr7_3:83420823-83420842 Msa1131070:five_prime_UTR 50.0%
TGTTGTGTGCCCGCTGTTTG+TGG + chr7_3:83417367-83417386 None:intergenic 55.0%
ACGAAGCTCGGGAGGATTGA+TGG + chr7_3:83417573-83417592 None:intergenic 55.0%
!! TGGCGGTGTCGATGCTTCAT+AGG + chr7_3:83417918-83417937 None:intergenic 55.0%
TGTCATGTTCGGCTGTGTGG+CGG + chr7_3:83417935-83417954 None:intergenic 55.0%
! AACTGAAGTGGGCTCTCCGA+AGG - chr7_3:83418710-83418729 Msa1131070:CDS 55.0%
! ACTGAAGTGGGCTCTCCGAA+GGG - chr7_3:83418711-83418730 Msa1131070:CDS 55.0%
GCCCAACGAGAATATCCTCC+TGG - chr7_3:83419214-83419233 Msa1131070:intron 55.0%
TCTCTGCATTGCATGCCAGG+AGG + chr7_3:83419232-83419251 None:intergenic 55.0%
GTCTCTCCTACCTCACCTCA+AGG - chr7_3:83419462-83419481 Msa1131070:intron 55.0%
GTGCTTCCTTGAGGTGAGGT+AGG + chr7_3:83419471-83419490 None:intergenic 55.0%
TTCCAGGTGCAGATTCGCCT+AGG - chr7_3:83419982-83420001 Msa1131070:intron 55.0%
ATCCTAGGCGAATCTGCACC+TGG + chr7_3:83419987-83420006 None:intergenic 55.0%
ATGCCTCTGTCAGACAAGCG+CGG - chr7_3:83420384-83420403 Msa1131070:intron 55.0%
GCAAAGGTGAAGGAGAAGCC+CGG + chr7_3:83420805-83420824 None:intergenic 55.0%
TGTGTGCCCGCTGTTTGTGG+CGG + chr7_3:83417364-83417383 None:intergenic 60.0%
ATGCCGCGCTTGTCTGACAG+AGG + chr7_3:83420390-83420409 None:intergenic 60.0%
ACAAGCGCGGCATCTGCAAC+AGG - chr7_3:83420397-83420416 Msa1131070:intron 60.0%
GCGGCATCTGCAACAGGAAC+TGG - chr7_3:83420403-83420422 Msa1131070:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 83417297 83420900 83417297 ID=Msa1131070;Name=Msa1131070
chr7_3 mRNA 83417297 83420900 83417297 ID=Msa1131070-mRNA-1;Parent=Msa1131070;Name=Msa1131070-mRNA-1;_AED=0.08;_eAED=0.08;_QI=143|1|0.87|1|0.85|0.75|8|0|222
chr7_3 exon 83417297 83417431 83417297 ID=Msa1131070-mRNA-1:exon:24798;Parent=Msa1131070-mRNA-1
chr7_3 exon 83417773 83417847 83417773 ID=Msa1131070-mRNA-1:exon:24797;Parent=Msa1131070-mRNA-1
chr7_3 exon 83418658 83418789 83418658 ID=Msa1131070-mRNA-1:exon:24796;Parent=Msa1131070-mRNA-1
chr7_3 exon 83418879 83418994 83418879 ID=Msa1131070-mRNA-1:exon:24795;Parent=Msa1131070-mRNA-1
chr7_3 exon 83419573 83419654 83419573 ID=Msa1131070-mRNA-1:exon:24794;Parent=Msa1131070-mRNA-1
chr7_3 exon 83419774 83419844 83419774 ID=Msa1131070-mRNA-1:exon:24793;Parent=Msa1131070-mRNA-1
chr7_3 exon 83420598 83420674 83420598 ID=Msa1131070-mRNA-1:exon:24792;Parent=Msa1131070-mRNA-1
chr7_3 exon 83420777 83420900 83420777 ID=Msa1131070-mRNA-1:exon:24791;Parent=Msa1131070-mRNA-1
chr7_3 five_prime_UTR 83420777 83420900 83420777 ID=Msa1131070-mRNA-1:five_prime_utr;Parent=Msa1131070-mRNA-1
chr7_3 five_prime_UTR 83420656 83420674 83420656 ID=Msa1131070-mRNA-1:five_prime_utr;Parent=Msa1131070-mRNA-1
chr7_3 CDS 83420598 83420655 83420598 ID=Msa1131070-mRNA-1:cds;Parent=Msa1131070-mRNA-1
chr7_3 CDS 83419774 83419844 83419774 ID=Msa1131070-mRNA-1:cds;Parent=Msa1131070-mRNA-1
chr7_3 CDS 83419573 83419654 83419573 ID=Msa1131070-mRNA-1:cds;Parent=Msa1131070-mRNA-1
chr7_3 CDS 83418879 83418994 83418879 ID=Msa1131070-mRNA-1:cds;Parent=Msa1131070-mRNA-1
chr7_3 CDS 83418658 83418789 83418658 ID=Msa1131070-mRNA-1:cds;Parent=Msa1131070-mRNA-1
chr7_3 CDS 83417773 83417847 83417773 ID=Msa1131070-mRNA-1:cds;Parent=Msa1131070-mRNA-1
chr7_3 CDS 83417297 83417431 83417297 ID=Msa1131070-mRNA-1:cds;Parent=Msa1131070-mRNA-1
Gene Sequence

>Msa1131070

ATGACTACTATTGGAAATTCATTCATCTCCATCAATCCTCCCGAGCTTCGTTTTCAATTTGAGTTGGAGAGGCAATCATTTTGCGATCTTAATGTTTTGAATAAGACAGAGTACTTCATTGCTTTTAAGGTGAAGACCACTTCACCGTCTAAGTACTTTGTACGACCTAACACTGGTGTGATACATCCTAGGGAATCGTGCATCATTAGAGTCACCCTCCAAGCCCAACGAGAATATCCTCCTGGCATGCAATGCAGAGATAAGTTTCTCATACAAACTACAACAGTGGATCCAAACACCAATGTTGATGATCTTCCGCTGGATACTTTTAATAAGGATAGTGGAAGGTTAACAGAAGAGTTGAAACTAAGAGTTGTATATGTCTCTCCTACCTCACCTCAAGGAAGCACAAGAGATGATACAGTGACAAACTCCACACAAAATCTTGATACTTCTTCGAGTCAAGCCTTACAACAATTGAAGGAGGAAAGAGATGCCTCTGTCAGACAAGCGCGGCATCTGCAACAGGAACTGGACATGCTGAAAAGGCGAAGAAATCGTAGAAGTGATCCGGGCTTCTCCTTCACCTTTGCCATGTTTGTGGGCCTTATTGGATTCTTGTTTGGTTTGCTTTTGAAACTTTCATTGTCTTCACCACCTACACAATGA

Protein sequence

>Msa1131070

MTTIGNSFISINPPELRFQFELERQSFCDLNVLNKTEYFIAFKVKTTSPSKYFVRPNTGVIHPRESCIIRVTLQAQREYPPGMQCRDKFLIQTTTVDPNTNVDDLPLDTFNKDSGRLTEELKLRVVYVSPTSPQGSTRDDTVTNSTQNLDTSSSQALQQLKEERDASVRQARHLQQELDMLKRRRNRRSDPGFSFTFAMFVGLIGFLFGLLLKLSLSSPPTQ*