AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0297620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0297620 MtrunA17_Chr2g0285841 93.569 311 20 0 1 311 1 311 0.0 593
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0297620 AT1G30130.3 58.438 320 115 3 1 311 1 311 6.55e-136 388
Msa0297620 AT1G30130.1 58.438 320 115 3 1 311 1 311 6.55e-136 388
Msa0297620 AT1G30130.2 58.438 320 115 3 1 311 1 311 6.55e-136 388

Find 92 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTACCTCATGTCAAATT+TGG 0.161730 2_3:-51342909 None:intergenic
TCCTTGTTGGTGTTTAATTT+TGG 0.182388 2_3:-51339563 None:intergenic
GTCCATTGGTATCGGTAATT+TGG 0.233892 2_3:-51339908 None:intergenic
TTAGGTGGATTGACGCTAAA+TGG 0.269497 2_3:+51342613 Msa0297620:CDS
TGTAGGTTGACTTTGTATTC+TGG 0.272744 2_3:+51342717 Msa0297620:three_prime_UTR
TATAATTTACATACCATAAA+AGG 0.293975 2_3:-51341046 None:intergenic
TCCTGGTTGCTTCCTCTTTG+TGG 0.305566 2_3:-51342552 None:intergenic
TCAGTTCATCACCCTGAGTT+TGG 0.330540 2_3:+51341455 Msa0297620:CDS
TCCTCCAGGCTATAAAATTA+TGG 0.331657 2_3:+51342427 Msa0297620:intron
GGTTACCATCATTACCAGTT+TGG 0.334757 2_3:-51342693 None:intergenic
AGTACCTTCGTAGAGAGATA+TGG 0.376715 2_3:-51339763 None:intergenic
GTTACCATCATTACCAGTTT+GGG 0.387512 2_3:-51342692 None:intergenic
GTAATTTGGCGAGCTTCATC+TGG 0.388533 2_3:-51339894 None:intergenic
GTCCTAGAGACAGGTGGTTT+AGG 0.396339 2_3:+51342595 Msa0297620:CDS
AATAAGAGTGGTGAAGGAAA+TGG 0.409411 2_3:-51339652 None:intergenic
TATAACGAACATTCCCAAAC+TGG 0.420353 2_3:+51342679 Msa0297620:three_prime_UTR
AGGTTGCTGTATGGATATAC+TGG 0.426939 2_3:+51341567 Msa0297620:CDS
GTAAAATAGTTTCCAAACTC+AGG 0.442321 2_3:-51341467 None:intergenic
TATGGGTTCAGCTCCGTCAT+TGG 0.448545 2_3:-51339745 None:intergenic
GCGCGTGAGGTGCACGGTCG+AGG 0.452719 2_3:-51339854 None:intergenic
TGATGTCGAGCACAACTTGT+TGG 0.459330 2_3:-51341504 None:intergenic
CGCCGCAGTAGCGCGTGAAA+AGG 0.462406 2_3:-51339690 None:intergenic
AATATCAAAGCAAGTGATCC+TGG 0.464370 2_3:+51341410 Msa0297620:CDS
TGTTCATATCCCACACTAGC+TGG 0.466991 2_3:-51340090 None:intergenic
TTCATCTGGAGAAAGATGAT+TGG 0.468451 2_3:-51339880 None:intergenic
GAACCGGGTGGCGGCGCTGA+TGG 0.470400 2_3:-51339791 None:intergenic
TTGTAATAATAGTGTACATC+AGG 0.472463 2_3:+51342831 Msa0297620:three_prime_UTR
TACGTGGGAATGGCATATCT+AGG 0.480461 2_3:-51342477 None:intergenic
CTTCGTCAGCTAAATAATCC+TGG 0.483547 2_3:-51342569 None:intergenic
AACTATGACAGGATATGCTT+GGG 0.484809 2_3:+51341381 Msa0297620:intron
CATTCCCAAACTGGTAATGA+TGG 0.485448 2_3:+51342688 Msa0297620:three_prime_UTR
TAGCAATAATACACACTCAA+TGG 0.488999 2_3:-51340117 None:intergenic
AGGACTGACATGCAAAGCTT+TGG 0.490500 2_3:-51341026 None:intergenic
TTCGTCCCTGTACGTGGGAA+TGG 0.491251 2_3:-51342487 None:intergenic
ATCCATACAGCAACCTTATG+AGG 0.491264 2_3:-51341560 None:intergenic
TATTGAAAGGAATGGTGAAC+CGG 0.494360 2_3:-51339807 None:intergenic
AGAATGCGGATTGAAAATAA+AGG 0.498652 2_3:-51340993 None:intergenic
TCATCTGGAGAAAGATGATT+GGG 0.500771 2_3:-51339879 None:intergenic
CTACCATCAGCGCCGCCACC+CGG 0.504605 2_3:+51339788 Msa0297620:CDS
GAACTATGACAGGATATGCT+TGG 0.507027 2_3:+51341380 Msa0297620:intron
GATATGCCATTCCCACGTAC+AGG 0.511186 2_3:+51342481 Msa0297620:CDS
GACAGGATATGCTTGGGAGT+TGG 0.511416 2_3:+51341387 Msa0297620:intron
TTCAGCTCCGTCATTGGAAG+AGG 0.511539 2_3:-51339739 None:intergenic
GTACCTTCGTAGAGAGATAT+GGG 0.518661 2_3:-51339762 None:intergenic
TCGATCCACATTTCACTATG+TGG 0.518798 2_3:-51342784 None:intergenic
AAACACTTACATGGGTCCAT+TGG 0.525548 2_3:-51339922 None:intergenic
AGGAATGGTGAACCGGGTGG+CGG 0.528502 2_3:-51339800 None:intergenic
GCTTCTTCCTCTTCCAATGA+CGG 0.530349 2_3:+51339732 Msa0297620:CDS
GGATAGAATAAGAGTGGTGA+AGG 0.535689 2_3:-51339658 None:intergenic
AAGGTTACTCTTTCAGCCCA+TGG 0.536237 2_3:-51340974 None:intergenic
CTAGAGACAGGTGGTTTAGG+TGG 0.538191 2_3:+51342598 Msa0297620:CDS
ATTGACAATTCCAGCTAGTG+TGG 0.542422 2_3:+51340080 Msa0297620:CDS
ACGAAGCAAGTCCTAGAGAC+AGG 0.547793 2_3:+51342586 Msa0297620:CDS
CACCTAAACCACCTGTCTCT+AGG 0.548815 2_3:-51342597 None:intergenic
CGCGTGAAAAGGAAGGATAA+TGG 0.557879 2_3:-51339679 None:intergenic
GATAGAAAACTGCAGTGTTG+TGG 0.563843 2_3:+51342522 Msa0297620:CDS
TAAAGCTTCGTCCCTGTACG+TGG 0.567298 2_3:-51342493 None:intergenic
GATAATGGATAGAATAAGAG+TGG 0.572586 2_3:-51339664 None:intergenic
TGCCTCATAAGGTTGCTGTA+TGG 0.575098 2_3:+51341558 Msa0297620:CDS
TAAAATAGTTTCCAAACTCA+GGG 0.579999 2_3:-51341466 None:intergenic
ACGTGGGAATGGCATATCTA+GGG 0.589402 2_3:-51342476 None:intergenic
AGAGGAAGAAGCGGCGCGTG+AGG 0.594894 2_3:-51339721 None:intergenic
GAATACAAAGTCAACCTACA+TGG 0.596208 2_3:-51342714 None:intergenic
GTAGCGAACATTGTATTGAA+AGG 0.600684 2_3:-51339820 None:intergenic
TCCACAAAGAGGAAGCAACC+AGG 0.603581 2_3:+51342551 Msa0297620:CDS
TTACATGGGTCCATTGGTAT+CGG 0.607772 2_3:-51339916 None:intergenic
CGCCAAATTACCGATACCAA+TGG 0.613455 2_3:+51339906 Msa0297620:CDS
GGATTGACGCTAAATGGCCA+TGG 0.618793 2_3:+51342619 Msa0297620:CDS
GAACATTGTATTGAAAGGAA+TGG 0.618795 2_3:-51339815 None:intergenic
TGGGTGGCGCGTGAGGTGCA+CGG 0.621460 2_3:-51339860 None:intergenic
AGATGATTGGGTGGCGCGTG+AGG 0.621550 2_3:-51339867 None:intergenic
GCAGTAGCGCGTGAAAAGGA+AGG 0.621678 2_3:-51339686 None:intergenic
TATGTCCACATAGTGAAATG+TGG 0.624391 2_3:+51342779 Msa0297620:three_prime_UTR
TCCAGGCTATAAAATTATGG+TGG 0.628267 2_3:+51342430 Msa0297620:intron
GTCATTGGAAGAGGAAGAAG+CGG 0.628278 2_3:-51339730 None:intergenic
GTTGTGCTCGACATCAGCAT+CGG 0.629113 2_3:+51341511 Msa0297620:CDS
ATATGCCATTCCCACGTACA+GGG 0.629309 2_3:+51342482 Msa0297620:CDS
GGTAATGATGGTAACCATGT+AGG 0.629430 2_3:+51342700 Msa0297620:three_prime_UTR
AAGTCACCAAATTTGACATG+AGG 0.642319 2_3:+51342903 Msa0297620:three_prime_UTR
TCAGGTAACAAATACACCAT+GGG 0.642717 2_3:+51340958 Msa0297620:intron
TTTGAAGAAGTGCATTGCTG+AGG 0.643953 2_3:+51340164 Msa0297620:CDS
TTCAGGTAACAAATACACCA+TGG 0.647309 2_3:+51340957 Msa0297620:intron
TTGACAATTCCAGCTAGTGT+GGG 0.653320 2_3:+51340081 Msa0297620:CDS
TCTGGAGAAAGATGATTGGG+TGG 0.677082 2_3:-51339876 None:intergenic
ATTGAAAGGAATGGTGAACC+GGG 0.679558 2_3:-51339806 None:intergenic
ACCAAAATTAAACACCAACA+AGG 0.684374 2_3:+51339562 Msa0297620:five_prime_UTR
TGTGGATTCAGTCCACAAAG+AGG 0.695546 2_3:+51342540 Msa0297620:CDS
GAAAGGAATGGTGAACCGGG+TGG 0.699357 2_3:-51339803 None:intergenic
AAAGCTTCGTCCCTGTACGT+GGG 0.700795 2_3:-51342492 None:intergenic
TTGGCTACTAGATCAGAATG+CGG 0.714234 2_3:-51341007 None:intergenic
AAGCAAGTCCTAGAGACAGG+TGG 0.718600 2_3:+51342589 Msa0297620:CDS
GAACCCATATCTCTCTACGA+AGG 0.724309 2_3:+51339759 Msa0297620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATTCCATTATTATTTT+TGG - chr2_3:51339609-51339628 None:intergenic 10.0%
!! AATACTTAATCATTTAAAAA+TGG - chr2_3:51341604-51341623 None:intergenic 10.0%
!!! ATTTTCACCAAAAATAATAA+TGG + chr2_3:51339599-51339618 Msa0297620:exon 15.0%
!! ATTATATGTGTAAATTGAAA+AGG - chr2_3:51340228-51340247 None:intergenic 15.0%
!!! GTATTTTGATAAAGAAATAT+AGG + chr2_3:51340336-51340355 Msa0297620:intron 15.0%
!! TATAATTTACATACCATAAA+AGG - chr2_3:51341049-51341068 None:intergenic 15.0%
!!! TTAATTTAAGTTAACTATGT+AGG - chr2_3:51341293-51341312 None:intergenic 15.0%
!!! TTAGTTATTTTGAAAATTGA+GGG - chr2_3:51341857-51341876 None:intergenic 15.0%
!! CATAAAAAACATTGTTTATA+TGG + chr2_3:51342044-51342063 Msa0297620:intron 15.0%
!!! TAAAAATGTTTTTTCCTTGT+TGG - chr2_3:51339579-51339598 None:intergenic 20.0%
!!! ATTCTTTACTTTTTCTCAAT+TGG + chr2_3:51339951-51339970 Msa0297620:intron 20.0%
!!! TTCTTTACTTTTTCTCAATT+GGG + chr2_3:51339952-51339971 Msa0297620:intron 20.0%
!! TTACGTTTCAATTTAAATGT+AGG + chr2_3:51340004-51340023 Msa0297620:intron 20.0%
!! TGAGAAGATTAATTAATTAG+TGG + chr2_3:51340314-51340333 Msa0297620:intron 20.0%
!! TTCTATCATAAACCATATTT+GGG + chr2_3:51340644-51340663 Msa0297620:intron 20.0%
!! CAAAAAATATTTACTTCTCA+TGG - chr2_3:51341718-51341737 None:intergenic 20.0%
!!! AAATATTTTTTGCTTGAGAT+TGG + chr2_3:51341726-51341745 Msa0297620:intron 20.0%
!!! AATATTTTTTGCTTGAGATT+GGG + chr2_3:51341727-51341746 Msa0297620:intron 20.0%
!!! TTTGACTTAAAATGCATTTT+TGG + chr2_3:51341782-51341801 Msa0297620:intron 20.0%
!!! TATTTTTAAATCCACGATTT+TGG + chr2_3:51341830-51341849 Msa0297620:intron 20.0%
!!! GTTAGTTATTTTGAAAATTG+AGG - chr2_3:51341858-51341877 None:intergenic 20.0%
!! TTTCAATTCAAATGCAAAAA+TGG - chr2_3:51342275-51342294 None:intergenic 20.0%
!! ACATAAAGTAATTCCTAAAA+AGG - chr2_3:51342359-51342378 None:intergenic 20.0%
!!! TGTGTAAATTCTAAATTTTG+AGG + chr2_3:51342862-51342881 Msa0297620:three_prime_UTR 20.0%
!! TTTTATATGGGTGTTAACAT+AGG + chr2_3:51339488-51339507 Msa0297620:five_prime_UTR 25.0%
! ATGAAGAAAAACACTTACAT+GGG - chr2_3:51339933-51339952 None:intergenic 25.0%
! AATGAAGAAAAACACTTACA+TGG - chr2_3:51339934-51339953 None:intergenic 25.0%
!! CGTAAAAATCAAATTTTGCA+TGG - chr2_3:51339989-51340008 None:intergenic 25.0%
! CATATGGAGAAAATTCAATT+GGG + chr2_3:51340466-51340485 Msa0297620:intron 25.0%
! TTGTTAGGTTATCATGTTAT+GGG - chr2_3:51340557-51340576 None:intergenic 25.0%
! GTTCTATCATAAACCATATT+TGG + chr2_3:51340643-51340662 Msa0297620:intron 25.0%
! AAACTATAAGAGAAACTGTT+AGG - chr2_3:51340696-51340715 None:intergenic 25.0%
!! GTTTCTCTTATAGTTTTTCT+AGG + chr2_3:51340700-51340719 Msa0297620:intron 25.0%
! AGAAGAATAAACTGACAAAA+TGG - chr2_3:51340752-51340771 None:intergenic 25.0%
! GTCAGTTTATTCTTCTTTAT+AGG + chr2_3:51340756-51340775 Msa0297620:intron 25.0%
!! ATTCAGATACTTGATAATTC+AGG + chr2_3:51340846-51340865 Msa0297620:intron 25.0%
!!! CGATGTTTTTTTTTTGTTTC+AGG + chr2_3:51340940-51340959 Msa0297620:intron 25.0%
!!! ATAGCTTTTCTGCATTTTTT+CGG + chr2_3:51341336-51341355 Msa0297620:intron 25.0%
! TAAAATAGTTTCCAAACTCA+GGG - chr2_3:51341469-51341488 None:intergenic 25.0%
!! TTGTTATGATGAATTTTCGT+TGG + chr2_3:51341645-51341664 Msa0297620:intron 25.0%
!! AGCAATTTAAAATCTCACTT+CGG + chr2_3:51341670-51341689 Msa0297620:intron 25.0%
! TCTGTGACATAATACTATTT+AGG + chr2_3:51341951-51341970 Msa0297620:intron 25.0%
!!! TATTTTTAGATCCCTGAATT+TGG - chr2_3:51342192-51342211 None:intergenic 25.0%
! AATTCAGGGATCTAAAAATA+TGG + chr2_3:51342192-51342211 Msa0297620:intron 25.0%
! ATTCAGGGATCTAAAAATAT+GGG + chr2_3:51342193-51342212 Msa0297620:intron 25.0%
!! TATTTTGTCTCATACGATTT+TGG - chr2_3:51342220-51342239 None:intergenic 25.0%
! AAAATAAAGGCAGTAAAGTT+GGG - chr2_3:51342305-51342324 None:intergenic 25.0%
! TAAAATAAAGGCAGTAAAGT+TGG - chr2_3:51342306-51342325 None:intergenic 25.0%
!!! CTTTACTGCCTTTATTTTAA+TGG + chr2_3:51342307-51342326 Msa0297620:intron 25.0%
! CAACATGTCCATTAAAATAA+AGG - chr2_3:51342318-51342337 None:intergenic 25.0%
! TTGTAATAATAGTGTACATC+AGG + chr2_3:51342831-51342850 Msa0297620:three_prime_UTR 25.0%
ACCAAAATTAAACACCAACA+AGG + chr2_3:51339562-51339581 Msa0297620:five_prime_UTR 30.0%
!! TCCTTGTTGGTGTTTAATTT+TGG - chr2_3:51339566-51339585 None:intergenic 30.0%
!! GATAATGGATAGAATAAGAG+TGG - chr2_3:51339667-51339686 None:intergenic 30.0%
GAACATTGTATTGAAAGGAA+TGG - chr2_3:51339818-51339837 None:intergenic 30.0%
TAGCAATAATACACACTCAA+TGG - chr2_3:51340120-51340139 None:intergenic 30.0%
TTTGTCGCTAAACATAGTAA+GGG + chr2_3:51340279-51340298 Msa0297620:intron 30.0%
TAACAATGAATTTGTCTGAG+TGG + chr2_3:51340381-51340400 Msa0297620:intron 30.0%
GCATATGGAGAAAATTCAAT+TGG + chr2_3:51340465-51340484 Msa0297620:intron 30.0%
GTTGTTAGGTTATCATGTTA+TGG - chr2_3:51340558-51340577 None:intergenic 30.0%
!!! TGGTTGTTTTTGTTGTTGTT+AGG - chr2_3:51340572-51340591 None:intergenic 30.0%
ATGTAGCTATCTCATTTAGT+AGG - chr2_3:51340603-51340622 None:intergenic 30.0%
TACTAAATGAGATAGCTACA+TGG + chr2_3:51340602-51340621 Msa0297620:intron 30.0%
CTTCTTTATAGGATTTCTCT+TGG + chr2_3:51340767-51340786 Msa0297620:intron 30.0%
!! TGGTGTTTTTCACTTTTATG+TGG + chr2_3:51340809-51340828 Msa0297620:intron 30.0%
!! GGTGTTTTTCACTTTTATGT+GGG + chr2_3:51340810-51340829 Msa0297620:intron 30.0%
!! AAGTAGAGTATTGTGAAAAC+TGG + chr2_3:51340914-51340933 Msa0297620:intron 30.0%
! AGAATGCGGATTGAAAATAA+AGG - chr2_3:51340996-51341015 None:intergenic 30.0%
! ACCATTTCTATGCAGATTTT+AGG + chr2_3:51341068-51341087 Msa0297620:intron 30.0%
TCCTAAAATCTGCATAGAAA+TGG - chr2_3:51341072-51341091 None:intergenic 30.0%
GAAGAGGAAAACACAATATA+TGG - chr2_3:51341180-51341199 None:intergenic 30.0%
! ATTGTGTTTTCCTCTTCTTT+TGG + chr2_3:51341183-51341202 Msa0297620:intron 30.0%
GCATAATATGATTCAAACTG+AGG + chr2_3:51341211-51341230 Msa0297620:intron 30.0%
CAATCAACACATACATATCA+TGG + chr2_3:51341249-51341268 Msa0297620:intron 30.0%
GTAAAATAGTTTCCAAACTC+AGG - chr2_3:51341470-51341489 None:intergenic 30.0%
! GCAATTTAAAATCTCACTTC+GGG + chr2_3:51341671-51341690 Msa0297620:intron 30.0%
! CAATTTAAAATCTCACTTCG+GGG + chr2_3:51341672-51341691 Msa0297620:intron 30.0%
CTTCTCATGGAAGAAAATAA+TGG - chr2_3:51341705-51341724 None:intergenic 30.0%
CAACAACAACAACAAAATAG+AGG - chr2_3:51341810-51341829 None:intergenic 30.0%
TAATTGTGTGAGAACTAAGA+TGG - chr2_3:51342100-51342119 None:intergenic 30.0%
!!! TGGGTTGATTTTTGATGATT+TGG - chr2_3:51342132-51342151 None:intergenic 30.0%
AAAATCAACCCAAATGCATA+TGG + chr2_3:51342140-51342159 Msa0297620:intron 30.0%
AAATCAACCCAAATGCATAT+GGG + chr2_3:51342141-51342160 Msa0297620:intron 30.0%
! CTTGATATTTTCTATGACCA+TGG - chr2_3:51342639-51342658 None:intergenic 30.0%
AATAAGAGTGGTGAAGGAAA+TGG - chr2_3:51339655-51339674 None:intergenic 35.0%
TATTGAAAGGAATGGTGAAC+CGG - chr2_3:51339810-51339829 None:intergenic 35.0%
GTAGCGAACATTGTATTGAA+AGG - chr2_3:51339823-51339842 None:intergenic 35.0%
TCATCTGGAGAAAGATGATT+GGG - chr2_3:51339882-51339901 None:intergenic 35.0%
TTCATCTGGAGAAAGATGAT+TGG - chr2_3:51339883-51339902 None:intergenic 35.0%
!!! CAAATTTTGCATGGTTCTGA+GGG - chr2_3:51339980-51339999 None:intergenic 35.0%
!! TCAAATTTTGCATGGTTCTG+AGG - chr2_3:51339981-51340000 None:intergenic 35.0%
CTTTGTCGCTAAACATAGTA+AGG + chr2_3:51340278-51340297 Msa0297620:intron 35.0%
TTCTCCATATGCAATAGTCA+GGG - chr2_3:51340457-51340476 None:intergenic 35.0%
TTTCTCCATATGCAATAGTC+AGG - chr2_3:51340458-51340477 None:intergenic 35.0%
ATGGAGAAAATTCAATTGGG+AGG + chr2_3:51340469-51340488 Msa0297620:intron 35.0%
TGGAGAAAATTCAATTGGGA+GGG + chr2_3:51340470-51340489 Msa0297620:intron 35.0%
AGCTATCTCATTTAGTAGGA+TGG - chr2_3:51340599-51340618 None:intergenic 35.0%
! CAATGAGTTGAACCCAAATA+TGG - chr2_3:51340659-51340678 None:intergenic 35.0%
GTTGAGTGAAAAACAGTTTG+TGG + chr2_3:51340789-51340808 Msa0297620:intron 35.0%
TTCAGGTAACAAATACACCA+TGG + chr2_3:51340957-51340976 Msa0297620:intron 35.0%
TCAGGTAACAAATACACCAT+GGG + chr2_3:51340958-51340977 Msa0297620:intron 35.0%
! TTTGCATGTCAGTCCTTTTA+TGG + chr2_3:51341033-51341052 Msa0297620:CDS 35.0%
TATGCAATGACCAAAAGAAG+AGG - chr2_3:51341196-51341215 None:intergenic 35.0%
CAACACATACATATCATGGT+TGG + chr2_3:51341253-51341272 Msa0297620:intron 35.0%
AACTATGACAGGATATGCTT+GGG + chr2_3:51341381-51341400 Msa0297620:intron 35.0%
AATATCAAAGCAAGTGATCC+TGG + chr2_3:51341410-51341429 Msa0297620:CDS 35.0%
! GATATGCTAAGATTTTCTCC+AGG - chr2_3:51341431-51341450 None:intergenic 35.0%
GAAATACCAGAACAACACTT+TGG + chr2_3:51341749-51341768 Msa0297620:intron 35.0%
AGCTTCAAAATGTGTAACTG+GGG - chr2_3:51341886-51341905 None:intergenic 35.0%
CAGCTTCAAAATGTGTAACT+GGG - chr2_3:51341887-51341906 None:intergenic 35.0%
TCAGCTTCAAAATGTGTAAC+TGG - chr2_3:51341888-51341907 None:intergenic 35.0%
AAAACCGAATGACCAAATTC+AGG + chr2_3:51342177-51342196 Msa0297620:intron 35.0%
AAACCGAATGACCAAATTCA+GGG + chr2_3:51342178-51342197 Msa0297620:intron 35.0%
! TTTAATGGACATGTTGCCTT+TGG + chr2_3:51342322-51342341 Msa0297620:intron 35.0%
!! AAAGGTTGATGTTGTTCCAA+AGG - chr2_3:51342341-51342360 None:intergenic 35.0%
! GGAACAACATCAACCTTTTT+AGG + chr2_3:51342343-51342362 Msa0297620:intron 35.0%
TCCTCCAGGCTATAAAATTA+TGG + chr2_3:51342427-51342446 Msa0297620:intron 35.0%
! ACCATAATTTTATAGCCTGG+AGG - chr2_3:51342431-51342450 None:intergenic 35.0%
TCCAGGCTATAAAATTATGG+TGG + chr2_3:51342430-51342449 Msa0297620:intron 35.0%
! TCCACCATAATTTTATAGCC+TGG - chr2_3:51342434-51342453 None:intergenic 35.0%
TATAACGAACATTCCCAAAC+TGG + chr2_3:51342679-51342698 Msa0297620:three_prime_UTR 35.0%
GTTACCATCATTACCAGTTT+GGG - chr2_3:51342695-51342714 None:intergenic 35.0%
GAATACAAAGTCAACCTACA+TGG - chr2_3:51342717-51342736 None:intergenic 35.0%
! TGTAGGTTGACTTTGTATTC+TGG + chr2_3:51342717-51342736 Msa0297620:three_prime_UTR 35.0%
TATGTCCACATAGTGAAATG+TGG + chr2_3:51342779-51342798 Msa0297620:three_prime_UTR 35.0%
GGATAGAATAAGAGTGGTGA+AGG - chr2_3:51339661-51339680 None:intergenic 40.0%
GTACCTTCGTAGAGAGATAT+GGG - chr2_3:51339765-51339784 None:intergenic 40.0%
AGTACCTTCGTAGAGAGATA+TGG - chr2_3:51339766-51339785 None:intergenic 40.0%
ATTGAAAGGAATGGTGAACC+GGG - chr2_3:51339809-51339828 None:intergenic 40.0%
!! GTCCATTGGTATCGGTAATT+TGG - chr2_3:51339911-51339930 None:intergenic 40.0%
TTACATGGGTCCATTGGTAT+CGG - chr2_3:51339919-51339938 None:intergenic 40.0%
AAACACTTACATGGGTCCAT+TGG - chr2_3:51339925-51339944 None:intergenic 40.0%
ATTGACAATTCCAGCTAGTG+TGG + chr2_3:51340080-51340099 Msa0297620:CDS 40.0%
TTGACAATTCCAGCTAGTGT+GGG + chr2_3:51340081-51340100 Msa0297620:CDS 40.0%
! TTTGAAGAAGTGCATTGCTG+AGG + chr2_3:51340164-51340183 Msa0297620:CDS 40.0%
ATGAATTTGTCTGAGTGGTG+AGG + chr2_3:51340386-51340405 Msa0297620:intron 40.0%
TGAATTTGTCTGAGTGGTGA+GGG + chr2_3:51340387-51340406 Msa0297620:intron 40.0%
TGATCCCTGACTATTGCATA+TGG + chr2_3:51340450-51340469 Msa0297620:intron 40.0%
GGAGAAAATTCAATTGGGAG+GGG + chr2_3:51340471-51340490 Msa0297620:intron 40.0%
GAGAAAATTCAATTGGGAGG+GGG + chr2_3:51340472-51340491 Msa0297620:intron 40.0%
AGAAAATTCAATTGGGAGGG+GGG + chr2_3:51340473-51340492 Msa0297620:intron 40.0%
TCATTTAGTAGGATGGAGCT+TGG - chr2_3:51340592-51340611 None:intergenic 40.0%
GAGTCGAACATGGTTTATGA+TGG - chr2_3:51340730-51340749 None:intergenic 40.0%
TGACAAAATGGAGTCGAACA+TGG - chr2_3:51340740-51340759 None:intergenic 40.0%
TTGGCTACTAGATCAGAATG+CGG - chr2_3:51341010-51341029 None:intergenic 40.0%
AGCATATCCTGTCATAGTTC+AGG - chr2_3:51341380-51341399 None:intergenic 40.0%
GAACTATGACAGGATATGCT+TGG + chr2_3:51341380-51341399 Msa0297620:intron 40.0%
!! CTTTTGGTTGATGCCTCATA+AGG + chr2_3:51341547-51341566 Msa0297620:CDS 40.0%
ATCCATACAGCAACCTTATG+AGG - chr2_3:51341563-51341582 None:intergenic 40.0%
AGGTTGCTGTATGGATATAC+TGG + chr2_3:51341567-51341586 Msa0297620:CDS 40.0%
!! TACACACCAAAGTGTTGTTC+TGG - chr2_3:51341758-51341777 None:intergenic 40.0%
AAATTGAGGGACCAAAATCG+TGG - chr2_3:51341844-51341863 None:intergenic 40.0%
GCTTCAAAATGTGTAACTGG+GGG - chr2_3:51341885-51341904 None:intergenic 40.0%
GATCCCTGAATTTGGTCATT+CGG - chr2_3:51342184-51342203 None:intergenic 40.0%
GATAGAAAACTGCAGTGTTG+TGG + chr2_3:51342522-51342541 Msa0297620:CDS 40.0%
CTTCGTCAGCTAAATAATCC+TGG - chr2_3:51342572-51342591 None:intergenic 40.0%
!! TTAGGTGGATTGACGCTAAA+TGG + chr2_3:51342613-51342632 Msa0297620:CDS 40.0%
! CATTCCCAAACTGGTAATGA+TGG + chr2_3:51342688-51342707 Msa0297620:three_prime_UTR 40.0%
GGTTACCATCATTACCAGTT+TGG - chr2_3:51342696-51342715 None:intergenic 40.0%
GGTAATGATGGTAACCATGT+AGG + chr2_3:51342700-51342719 Msa0297620:three_prime_UTR 40.0%
TCGATCCACATTTCACTATG+TGG - chr2_3:51342787-51342806 None:intergenic 40.0%
CGCGTGAAAAGGAAGGATAA+TGG - chr2_3:51339682-51339701 None:intergenic 45.0%
GTCATTGGAAGAGGAAGAAG+CGG - chr2_3:51339733-51339752 None:intergenic 45.0%
GCTTCTTCCTCTTCCAATGA+CGG + chr2_3:51339732-51339751 Msa0297620:CDS 45.0%
GAACCCATATCTCTCTACGA+AGG + chr2_3:51339759-51339778 Msa0297620:CDS 45.0%
TCTGGAGAAAGATGATTGGG+TGG - chr2_3:51339879-51339898 None:intergenic 45.0%
GTAATTTGGCGAGCTTCATC+TGG - chr2_3:51339897-51339916 None:intergenic 45.0%
CGCCAAATTACCGATACCAA+TGG + chr2_3:51339906-51339925 Msa0297620:CDS 45.0%
TGTTCATATCCCACACTAGC+TGG - chr2_3:51340093-51340112 None:intergenic 45.0%
AGTTGAGCCACTTAAGCAAG+TGG + chr2_3:51340418-51340437 Msa0297620:intron 45.0%
GAAAATTCAATTGGGAGGGG+GGG + chr2_3:51340474-51340493 Msa0297620:intron 45.0%
CAAAGTTTCGCACACATGGT+GGG - chr2_3:51340532-51340551 None:intergenic 45.0%
ACAAAGTTTCGCACACATGG+TGG - chr2_3:51340533-51340552 None:intergenic 45.0%
AAGGTTACTCTTTCAGCCCA+TGG - chr2_3:51340977-51340996 None:intergenic 45.0%
AGGACTGACATGCAAAGCTT+TGG - chr2_3:51341029-51341048 None:intergenic 45.0%
GTTACTTCCTCAGTTTCGCT+CGG + chr2_3:51341153-51341172 Msa0297620:intron 45.0%
! CCTGTCATAGTTCAGGTTCA+GGG - chr2_3:51341373-51341392 None:intergenic 45.0%
! TCCTGTCATAGTTCAGGTTC+AGG - chr2_3:51341374-51341393 None:intergenic 45.0%
TCAGTTCATCACCCTGAGTT+TGG + chr2_3:51341455-51341474 Msa0297620:CDS 45.0%
TGATGTCGAGCACAACTTGT+TGG - chr2_3:51341507-51341526 None:intergenic 45.0%
! CGGATCACGCAGTTTTCTTT+TGG + chr2_3:51341531-51341550 Msa0297620:CDS 45.0%
TGCCTCATAAGGTTGCTGTA+TGG + chr2_3:51341558-51341577 Msa0297620:CDS 45.0%
GTCTGCTCCCATATGCATTT+GGG - chr2_3:51342151-51342170 None:intergenic 45.0%
TGTCTGCTCCCATATGCATT+TGG - chr2_3:51342152-51342171 None:intergenic 45.0%
GGAGGACGAATGGACATAAT+GGG - chr2_3:51342413-51342432 None:intergenic 45.0%
TGGAGGACGAATGGACATAA+TGG - chr2_3:51342414-51342433 None:intergenic 45.0%
ATTATGTCCATTCGTCCTCC+AGG + chr2_3:51342413-51342432 Msa0297620:intron 45.0%
TTTATAGCCTGGAGGACGAA+TGG - chr2_3:51342423-51342442 None:intergenic 45.0%
ACGTGGGAATGGCATATCTA+GGG - chr2_3:51342479-51342498 None:intergenic 45.0%
TACGTGGGAATGGCATATCT+AGG - chr2_3:51342480-51342499 None:intergenic 45.0%
ATATGCCATTCCCACGTACA+GGG + chr2_3:51342482-51342501 Msa0297620:CDS 45.0%
TGTGGATTCAGTCCACAAAG+AGG + chr2_3:51342540-51342559 Msa0297620:CDS 45.0%
! TTCCTTTTCACGCGCTACTG+CGG + chr2_3:51339688-51339707 Msa0297620:CDS 50.0%
TTCAGCTCCGTCATTGGAAG+AGG - chr2_3:51339742-51339761 None:intergenic 50.0%
TATGGGTTCAGCTCCGTCAT+TGG - chr2_3:51339748-51339767 None:intergenic 50.0%
AGCCACTTAAGCAAGTGGTC+AGG + chr2_3:51340423-51340442 Msa0297620:intron 50.0%
GCCACTTAAGCAAGTGGTCA+GGG + chr2_3:51340424-51340443 Msa0297620:intron 50.0%
CCACTTAAGCAAGTGGTCAG+GGG + chr2_3:51340425-51340444 Msa0297620:intron 50.0%
GGCACAAAGTTTCGCACACA+TGG - chr2_3:51340536-51340555 None:intergenic 50.0%
ATATGGACCGAGCGAAACTG+AGG - chr2_3:51341163-51341182 None:intergenic 50.0%
CCCTGAACCTGAACTATGAC+AGG + chr2_3:51341370-51341389 Msa0297620:intron 50.0%
GACAGGATATGCTTGGGAGT+TGG + chr2_3:51341387-51341406 Msa0297620:intron 50.0%
GTTGTGCTCGACATCAGCAT+CGG + chr2_3:51341511-51341530 Msa0297620:CDS 50.0%
GATATGCCATTCCCACGTAC+AGG + chr2_3:51342481-51342500 Msa0297620:CDS 50.0%
AAAGCTTCGTCCCTGTACGT+GGG - chr2_3:51342495-51342514 None:intergenic 50.0%
TAAAGCTTCGTCCCTGTACG+TGG - chr2_3:51342496-51342515 None:intergenic 50.0%
TCCACAAAGAGGAAGCAACC+AGG + chr2_3:51342551-51342570 Msa0297620:CDS 50.0%
TCCTGGTTGCTTCCTCTTTG+TGG - chr2_3:51342555-51342574 None:intergenic 50.0%
ACGAAGCAAGTCCTAGAGAC+AGG + chr2_3:51342586-51342605 Msa0297620:CDS 50.0%
AAGCAAGTCCTAGAGACAGG+TGG + chr2_3:51342589-51342608 Msa0297620:CDS 50.0%
GTCCTAGAGACAGGTGGTTT+AGG + chr2_3:51342595-51342614 Msa0297620:CDS 50.0%
CACCTAAACCACCTGTCTCT+AGG - chr2_3:51342600-51342619 None:intergenic 50.0%
CTAGAGACAGGTGGTTTAGG+TGG + chr2_3:51342598-51342617 Msa0297620:CDS 50.0%
GGATTGACGCTAAATGGCCA+TGG + chr2_3:51342619-51342638 Msa0297620:CDS 50.0%
GCAGTAGCGCGTGAAAAGGA+AGG - chr2_3:51339689-51339708 None:intergenic 55.0%
GAAAGGAATGGTGAACCGGG+TGG - chr2_3:51339806-51339825 None:intergenic 55.0%
CCCCTGACCACTTGCTTAAG+TGG - chr2_3:51340428-51340447 None:intergenic 55.0%
GAGAACCCACCTTGTGTGGT+TGG + chr2_3:51340496-51340515 Msa0297620:intron 55.0%
ACCCACCTTGTGTGGTTGGA+AGG + chr2_3:51340500-51340519 Msa0297620:intron 55.0%
CCCTTCCAACCACACAAGGT+GGG - chr2_3:51340504-51340523 None:intergenic 55.0%
CCCACCTTGTGTGGTTGGAA+GGG + chr2_3:51340501-51340520 Msa0297620:intron 55.0%
CCACCTTGTGTGGTTGGAAG+GGG + chr2_3:51340502-51340521 Msa0297620:intron 55.0%
TCTCCCCTTCCAACCACACA+AGG - chr2_3:51340508-51340527 None:intergenic 55.0%
TTCGTCCCTGTACGTGGGAA+TGG - chr2_3:51342490-51342509 None:intergenic 55.0%
AGGAATGGTGAACCGGGTGG+CGG - chr2_3:51339803-51339822 None:intergenic 60.0%
AGATGATTGGGTGGCGCGTG+AGG - chr2_3:51339870-51339889 None:intergenic 60.0%
CCCCTTCCAACCACACAAGG+TGG - chr2_3:51340505-51340524 None:intergenic 60.0%
CGCCGCAGTAGCGCGTGAAA+AGG - chr2_3:51339693-51339712 None:intergenic 65.0%
AGAGGAAGAAGCGGCGCGTG+AGG - chr2_3:51339724-51339743 None:intergenic 65.0%
GGGGGAGAACCCACCTTGTG+TGG + chr2_3:51340492-51340511 Msa0297620:intron 65.0%
CTACCATCAGCGCCGCCACC+CGG + chr2_3:51339788-51339807 Msa0297620:CDS 70.0%
TGGGTGGCGCGTGAGGTGCA+CGG - chr2_3:51339863-51339882 None:intergenic 70.0%
! GAACCGGGTGGCGGCGCTGA+TGG - chr2_3:51339794-51339813 None:intergenic 75.0%
GCGCGTGAGGTGCACGGTCG+AGG - chr2_3:51339857-51339876 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 51339488 51342925 51339488 ID=Msa0297620;Name=Msa0297620
chr2_3 mRNA 51339488 51342925 51339488 ID=Msa0297620-mRNA-1;Parent=Msa0297620;Name=Msa0297620-mRNA-1;_AED=0.07;_eAED=0.07;_QI=130|1|1|1|1|1|5|278|311
chr2_3 exon 51339488 51339934 51339488 ID=Msa0297620-mRNA-1:exon:16297;Parent=Msa0297620-mRNA-1
chr2_3 exon 51340074 51340185 51340074 ID=Msa0297620-mRNA-1:exon:16298;Parent=Msa0297620-mRNA-1
chr2_3 exon 51340962 51341054 51340962 ID=Msa0297620-mRNA-1:exon:16299;Parent=Msa0297620-mRNA-1
chr2_3 exon 51341392 51341592 51341392 ID=Msa0297620-mRNA-1:exon:16300;Parent=Msa0297620-mRNA-1
chr2_3 exon 51342435 51342925 51342435 ID=Msa0297620-mRNA-1:exon:16301;Parent=Msa0297620-mRNA-1
chr2_3 five_prime_UTR 51339488 51339617 51339488 ID=Msa0297620-mRNA-1:five_prime_utr;Parent=Msa0297620-mRNA-1
chr2_3 CDS 51339618 51339934 51339618 ID=Msa0297620-mRNA-1:cds;Parent=Msa0297620-mRNA-1
chr2_3 CDS 51340074 51340185 51340074 ID=Msa0297620-mRNA-1:cds;Parent=Msa0297620-mRNA-1
chr2_3 CDS 51340962 51341054 51340962 ID=Msa0297620-mRNA-1:cds;Parent=Msa0297620-mRNA-1
chr2_3 CDS 51341392 51341592 51341392 ID=Msa0297620-mRNA-1:cds;Parent=Msa0297620-mRNA-1
chr2_3 CDS 51342435 51342647 51342435 ID=Msa0297620-mRNA-1:cds;Parent=Msa0297620-mRNA-1
chr2_3 three_prime_UTR 51342648 51342925 51342648 ID=Msa0297620-mRNA-1:three_prime_utr;Parent=Msa0297620-mRNA-1
Gene Sequence

>Msa0297620

ATGGAATTAATTTATCTTCTATGCTCTATAGTCTCCATTTCCTTCACCACTCTTATTCTATCCATTATCCTTCCTTTTCACGCGCTACTGCGGCGTTTAGTAACCTCACGCGCCGCTTCTTCCTCTTCCAATGACGGAGCTGAACCCATATCTCTCTACGAAGGTACTGTCTACCATCAGCGCCGCCACCCGGTTCACCATTCCTTTCAATACAATGTTCGCTACGCACTTATTGACCTCGACCGTGCACCTCACGCGCCACCCAATCATCTTTCTCCAGATGAAGCTCGCCAAATTACCGATACCAATGGACCCATTTTGCTATTGACAATTCCAGCTAGTGTGGGATATGAACAGAATCCATTGAGTGTGTATTATTGCTATGATGTTGAAGACTCTGATACACGTTTGAAGAAGTGCATTGCTGAGGTAACAAATACACCATGGGCTGAAAGAGTAACCTTTATTTTCAATCCGCATTCTGATCTAGTAGCCAAAGCTTTGCATGTCAGTCCTTTTATGGATATGCTTGGGAGTTGGAATATCAAAGCAAGTGATCCTGGAGAAAATCTTAGCATATCAATTTCAGTTCATCACCCTGAGTTTGGAAACTATTTTACTGCTAGTCTGAGAGCCAACAAGTTGTGCTCGACATCAGCATCGGATCACGCAGTTTTCTTTTGGTTGATGCCTCATAAGGTTGCTGTATGGATATACTGGCATGCTATAAAATTATGGTGGAAGAATGTGAAATTTATACAACACCCTAGATATGCCATTCCCACGTACAGGGACGAAGCTTTAATACGAGATAGAAAACTGCAGTGTTGTGGATTCAGTCCACAAAGAGGAAGCAACCAGGATTATTTAGCTGACGAAGCAAGTCCTAGAGACAGGTGGTTTAGGTGGATTGACGCTAAATGGCCATGGTCATAG

Protein sequence

>Msa0297620

MELIYLLCSIVSISFTTLILSIILPFHALLRRLVTSRAASSSSNDGAEPISLYEGTVYHQRRHPVHHSFQYNVRYALIDLDRAPHAPPNHLSPDEARQITDTNGPILLLTIPASVGYEQNPLSVYYCYDVEDSDTRLKKCIAEVTNTPWAERVTFIFNPHSDLVAKALHVSPFMDMLGSWNIKASDPGENLSISISVHHPEFGNYFTASLRANKLCSTSASDHAVFFWLMPHKVAVWIYWHAIKLWWKNVKFIQHPRYAIPTYRDEALIRDRKLQCCGFSPQRGSNQDYLADEASPRDRWFRWIDAKWPWS*