AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0236640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236640 MtrunA17_Chr2g0285841 93.569 311 20 0 1 311 1 311 0.0 593
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236640 AT1G30130.3 58.438 320 115 3 1 311 1 311 6.55e-136 388
Msa0236640 AT1G30130.1 58.438 320 115 3 1 311 1 311 6.55e-136 388
Msa0236640 AT1G30130.2 58.438 320 115 3 1 311 1 311 6.55e-136 388

Find 92 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTACCTCATGTCAAATT+TGG 0.161730 2_2:-9576764 None:intergenic
TCCTTGTTGGTGTTTAATTT+TGG 0.182388 2_2:-9573421 None:intergenic
GTCCATTGGTATCGGTAATT+TGG 0.233892 2_2:-9573766 None:intergenic
TTAGGTGGATTGACGCTAAA+TGG 0.269497 2_2:+9576468 Msa0236640:CDS
TGTAGGTTGACTTTGTATTC+TGG 0.272744 2_2:+9576572 Msa0236640:three_prime_UTR
TATAATTTACATACCATAAA+AGG 0.293975 2_2:-9574902 None:intergenic
TCCTGGTTGCTTCCTCTTTG+TGG 0.305566 2_2:-9576407 None:intergenic
TCAGTTCATCACCCTGAGTT+TGG 0.330540 2_2:+9575310 Msa0236640:CDS
TCCTCCAGGCTATAAAATTA+TGG 0.331657 2_2:+9576282 Msa0236640:intron
GGTTACCATCATTACCAGTT+TGG 0.334757 2_2:-9576548 None:intergenic
AGTACCTTCGTAGAGAGATA+TGG 0.376715 2_2:-9573621 None:intergenic
GTTACCATCATTACCAGTTT+GGG 0.387512 2_2:-9576547 None:intergenic
GTAATTTGGCGAGCTTCATC+TGG 0.388533 2_2:-9573752 None:intergenic
GTCCTAGAGACAGGTGGTTT+AGG 0.396339 2_2:+9576450 Msa0236640:CDS
AATAAGAGTGGTGAAGGAAA+TGG 0.409411 2_2:-9573510 None:intergenic
TATAACGAACATTCCCAAAC+TGG 0.420353 2_2:+9576534 Msa0236640:three_prime_UTR
AGGTTGCTGTATGGATATAC+TGG 0.426939 2_2:+9575422 Msa0236640:CDS
GTAAAATAGTTTCCAAACTC+AGG 0.442321 2_2:-9575322 None:intergenic
TATGGGTTCAGCTCCGTCAT+TGG 0.448545 2_2:-9573603 None:intergenic
GCGCGTGAGGTGCACGGTCG+AGG 0.452719 2_2:-9573712 None:intergenic
TGATGTCGAGCACAACTTGT+TGG 0.459330 2_2:-9575359 None:intergenic
CGCCGCAGTAGCGCGTGAAA+AGG 0.462406 2_2:-9573548 None:intergenic
AATATCAAAGCAAGTGATCC+TGG 0.464370 2_2:+9575265 Msa0236640:CDS
TGTTCATATCCCACACTAGC+TGG 0.466991 2_2:-9573948 None:intergenic
TTCATCTGGAGAAAGATGAT+TGG 0.468451 2_2:-9573738 None:intergenic
GAACCGGGTGGCGGCGCTGA+TGG 0.470400 2_2:-9573649 None:intergenic
TTGTAATAATAGTGTACATC+AGG 0.472463 2_2:+9576686 Msa0236640:three_prime_UTR
TACGTGGGAATGGCATATCT+AGG 0.480461 2_2:-9576332 None:intergenic
CTTCGTCAGCTAAATAATCC+TGG 0.483547 2_2:-9576424 None:intergenic
AACTATGACAGGATATGCTT+GGG 0.484809 2_2:+9575236 Msa0236640:intron
CATTCCCAAACTGGTAATGA+TGG 0.485448 2_2:+9576543 Msa0236640:three_prime_UTR
TAGCAATAATACACACTCAA+TGG 0.488999 2_2:-9573975 None:intergenic
AGGACTGACATGCAAAGCTT+TGG 0.490500 2_2:-9574882 None:intergenic
TTCGTCCCTGTACGTGGGAA+TGG 0.491251 2_2:-9576342 None:intergenic
ATCCATACAGCAACCTTATG+AGG 0.491264 2_2:-9575415 None:intergenic
TATTGAAAGGAATGGTGAAC+CGG 0.494360 2_2:-9573665 None:intergenic
AGAATGCGGATTGAAAATAA+AGG 0.498652 2_2:-9574849 None:intergenic
TCATCTGGAGAAAGATGATT+GGG 0.500771 2_2:-9573737 None:intergenic
CTACCATCAGCGCCGCCACC+CGG 0.504605 2_2:+9573646 Msa0236640:CDS
GAACTATGACAGGATATGCT+TGG 0.507027 2_2:+9575235 Msa0236640:intron
GATATGCCATTCCCACGTAC+AGG 0.511186 2_2:+9576336 Msa0236640:CDS
GACAGGATATGCTTGGGAGT+TGG 0.511416 2_2:+9575242 Msa0236640:intron
TTCAGCTCCGTCATTGGAAG+AGG 0.511539 2_2:-9573597 None:intergenic
GTACCTTCGTAGAGAGATAT+GGG 0.518661 2_2:-9573620 None:intergenic
TCGATCCACATTTCACTATG+TGG 0.518798 2_2:-9576639 None:intergenic
AAACACTTACATGGGTCCAT+TGG 0.525548 2_2:-9573780 None:intergenic
AGGAATGGTGAACCGGGTGG+CGG 0.528502 2_2:-9573658 None:intergenic
GCTTCTTCCTCTTCCAATGA+CGG 0.530349 2_2:+9573590 Msa0236640:CDS
GGATAGAATAAGAGTGGTGA+AGG 0.535689 2_2:-9573516 None:intergenic
AAGGTTACTCTTTCAGCCCA+TGG 0.536237 2_2:-9574830 None:intergenic
CTAGAGACAGGTGGTTTAGG+TGG 0.538191 2_2:+9576453 Msa0236640:CDS
ATTGACAATTCCAGCTAGTG+TGG 0.542422 2_2:+9573938 Msa0236640:CDS
ACGAAGCAAGTCCTAGAGAC+AGG 0.547793 2_2:+9576441 Msa0236640:CDS
CACCTAAACCACCTGTCTCT+AGG 0.548815 2_2:-9576452 None:intergenic
CGCGTGAAAAGGAAGGATAA+TGG 0.557879 2_2:-9573537 None:intergenic
GATAGAAAACTGCAGTGTTG+TGG 0.563843 2_2:+9576377 Msa0236640:CDS
TAAAGCTTCGTCCCTGTACG+TGG 0.567298 2_2:-9576348 None:intergenic
GATAATGGATAGAATAAGAG+TGG 0.572586 2_2:-9573522 None:intergenic
TGCCTCATAAGGTTGCTGTA+TGG 0.575098 2_2:+9575413 Msa0236640:CDS
TAAAATAGTTTCCAAACTCA+GGG 0.579999 2_2:-9575321 None:intergenic
ACGTGGGAATGGCATATCTA+GGG 0.589402 2_2:-9576331 None:intergenic
AGAGGAAGAAGCGGCGCGTG+AGG 0.594894 2_2:-9573579 None:intergenic
GAATACAAAGTCAACCTACA+TGG 0.596208 2_2:-9576569 None:intergenic
GTAGCGAACATTGTATTGAA+AGG 0.600684 2_2:-9573678 None:intergenic
TCCACAAAGAGGAAGCAACC+AGG 0.603581 2_2:+9576406 Msa0236640:CDS
TTACATGGGTCCATTGGTAT+CGG 0.607772 2_2:-9573774 None:intergenic
CGCCAAATTACCGATACCAA+TGG 0.613455 2_2:+9573764 Msa0236640:CDS
GGATTGACGCTAAATGGCCA+TGG 0.618793 2_2:+9576474 Msa0236640:CDS
GAACATTGTATTGAAAGGAA+TGG 0.618795 2_2:-9573673 None:intergenic
TGGGTGGCGCGTGAGGTGCA+CGG 0.621460 2_2:-9573718 None:intergenic
AGATGATTGGGTGGCGCGTG+AGG 0.621550 2_2:-9573725 None:intergenic
GCAGTAGCGCGTGAAAAGGA+AGG 0.621678 2_2:-9573544 None:intergenic
TATGTCCACATAGTGAAATG+TGG 0.624391 2_2:+9576634 Msa0236640:three_prime_UTR
TCCAGGCTATAAAATTATGG+TGG 0.628267 2_2:+9576285 Msa0236640:intron
GTCATTGGAAGAGGAAGAAG+CGG 0.628278 2_2:-9573588 None:intergenic
GTTGTGCTCGACATCAGCAT+CGG 0.629113 2_2:+9575366 Msa0236640:CDS
ATATGCCATTCCCACGTACA+GGG 0.629309 2_2:+9576337 Msa0236640:CDS
GGTAATGATGGTAACCATGT+AGG 0.629430 2_2:+9576555 Msa0236640:three_prime_UTR
AAGTCACCAAATTTGACATG+AGG 0.642319 2_2:+9576758 Msa0236640:three_prime_UTR
TCAGGTAACAAATACACCAT+GGG 0.642717 2_2:+9574814 Msa0236640:intron
TTTGAAGAAGTGCATTGCTG+AGG 0.643953 2_2:+9574022 Msa0236640:CDS
TTCAGGTAACAAATACACCA+TGG 0.647309 2_2:+9574813 Msa0236640:intron
TTGACAATTCCAGCTAGTGT+GGG 0.653320 2_2:+9573939 Msa0236640:CDS
TCTGGAGAAAGATGATTGGG+TGG 0.677082 2_2:-9573734 None:intergenic
ATTGAAAGGAATGGTGAACC+GGG 0.679558 2_2:-9573664 None:intergenic
ACCAAAATTAAACACCAACA+AGG 0.684374 2_2:+9573420 Msa0236640:five_prime_UTR
TGTGGATTCAGTCCACAAAG+AGG 0.695546 2_2:+9576395 Msa0236640:CDS
GAAAGGAATGGTGAACCGGG+TGG 0.699357 2_2:-9573661 None:intergenic
AAAGCTTCGTCCCTGTACGT+GGG 0.700795 2_2:-9576347 None:intergenic
TTGGCTACTAGATCAGAATG+CGG 0.714234 2_2:-9574863 None:intergenic
AAGCAAGTCCTAGAGACAGG+TGG 0.718600 2_2:+9576444 Msa0236640:CDS
GAACCCATATCTCTCTACGA+AGG 0.724309 2_2:+9573617 Msa0236640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATTCCATTATTATTTT+TGG - chr2_2:9573467-9573486 None:intergenic 10.0%
!! AATACTTAATCATTTAAAAA+TGG - chr2_2:9575459-9575478 None:intergenic 10.0%
!!! ATTTTCACCAAAAATAATAA+TGG + chr2_2:9573457-9573476 Msa0236640:exon 15.0%
!! ATTATATGTGTAAATTGAAA+AGG - chr2_2:9574086-9574105 None:intergenic 15.0%
!!! GTATTTTGATAAAGAAATAT+AGG + chr2_2:9574194-9574213 Msa0236640:intron 15.0%
!! TATAATTTACATACCATAAA+AGG - chr2_2:9574905-9574924 None:intergenic 15.0%
!!! TTAATTTAAGTTAACTATGT+AGG - chr2_2:9575148-9575167 None:intergenic 15.0%
!!! TTAGTTATTTTGAAAATTGA+GGG - chr2_2:9575712-9575731 None:intergenic 15.0%
!! CATAAAAAACATTGTTTATA+TGG + chr2_2:9575899-9575918 Msa0236640:intron 15.0%
!!! TAAAAATGTTTTTTCCTTGT+TGG - chr2_2:9573437-9573456 None:intergenic 20.0%
!!! ATTCTTTACTTTTTCTCAAT+TGG + chr2_2:9573809-9573828 Msa0236640:intron 20.0%
!!! TTCTTTACTTTTTCTCAATT+GGG + chr2_2:9573810-9573829 Msa0236640:intron 20.0%
!! TTACGTTTCAATTTAAATGT+AGG + chr2_2:9573862-9573881 Msa0236640:intron 20.0%
!! TGAGAAGATTAATTAATTAG+TGG + chr2_2:9574172-9574191 Msa0236640:intron 20.0%
!! TTCTATCATAAACCATATTT+GGG + chr2_2:9574500-9574519 Msa0236640:intron 20.0%
!! CAAAAAATATTTACTTCTCA+TGG - chr2_2:9575573-9575592 None:intergenic 20.0%
!!! AAATATTTTTTGCTTGAGAT+TGG + chr2_2:9575581-9575600 Msa0236640:intron 20.0%
!!! AATATTTTTTGCTTGAGATT+GGG + chr2_2:9575582-9575601 Msa0236640:intron 20.0%
!!! TTTGACTTAAAATGCATTTT+TGG + chr2_2:9575637-9575656 Msa0236640:intron 20.0%
!!! TATTTTTAAATCCACGATTT+TGG + chr2_2:9575685-9575704 Msa0236640:intron 20.0%
!!! GTTAGTTATTTTGAAAATTG+AGG - chr2_2:9575713-9575732 None:intergenic 20.0%
!! TTTCAATTCAAATGCAAAAA+TGG - chr2_2:9576130-9576149 None:intergenic 20.0%
!! ACATAAAGTAATTCCTAAAA+AGG - chr2_2:9576214-9576233 None:intergenic 20.0%
!!! TGTGTAAATTCTAAATTTTG+AGG + chr2_2:9576717-9576736 Msa0236640:three_prime_UTR 20.0%
! ATGAAGAAAAACACTTACAT+GGG - chr2_2:9573791-9573810 None:intergenic 25.0%
! AATGAAGAAAAACACTTACA+TGG - chr2_2:9573792-9573811 None:intergenic 25.0%
!! CGTAAAAATCAAATTTTGCA+TGG - chr2_2:9573847-9573866 None:intergenic 25.0%
! CATATGGAGAAAATTCAATT+GGG + chr2_2:9574324-9574343 Msa0236640:intron 25.0%
! TTGTTAGGTTATCATGTTAT+GGG - chr2_2:9574413-9574432 None:intergenic 25.0%
! GTTCTATCATAAACCATATT+TGG + chr2_2:9574499-9574518 Msa0236640:intron 25.0%
! AAACTATAAGAGAAACTGTT+AGG - chr2_2:9574552-9574571 None:intergenic 25.0%
!! GTTTCTCTTATAGTTTTTCT+AGG + chr2_2:9574556-9574575 Msa0236640:intron 25.0%
! AGAAGAATAAACTGACAAAA+TGG - chr2_2:9574608-9574627 None:intergenic 25.0%
! GTCAGTTTATTCTTCTTTAT+AGG + chr2_2:9574612-9574631 Msa0236640:intron 25.0%
!! ATTCAGATACTTGATAATTC+AGG + chr2_2:9574702-9574721 Msa0236640:intron 25.0%
!!! CGATGTTTTTTTTTTGTTTC+AGG + chr2_2:9574796-9574815 Msa0236640:intron 25.0%
!!! ATAGCTTTTCTGCATTTTTT+CGG + chr2_2:9575191-9575210 Msa0236640:intron 25.0%
! TAAAATAGTTTCCAAACTCA+GGG - chr2_2:9575324-9575343 None:intergenic 25.0%
!! TTGTTATGATGAATTTTCGT+TGG + chr2_2:9575500-9575519 Msa0236640:intron 25.0%
!! AGCAATTTAAAATCTCACTT+CGG + chr2_2:9575525-9575544 Msa0236640:intron 25.0%
! TCTGTGACATAATACTATTT+AGG + chr2_2:9575806-9575825 Msa0236640:intron 25.0%
!!! TATTTTTAGATCCCTGAATT+TGG - chr2_2:9576047-9576066 None:intergenic 25.0%
! AATTCAGGGATCTAAAAATA+TGG + chr2_2:9576047-9576066 Msa0236640:intron 25.0%
! ATTCAGGGATCTAAAAATAT+GGG + chr2_2:9576048-9576067 Msa0236640:intron 25.0%
!! TATTTTGTCTCATACGATTT+TGG - chr2_2:9576075-9576094 None:intergenic 25.0%
! AAAATAAAGGCAGTAAAGTT+GGG - chr2_2:9576160-9576179 None:intergenic 25.0%
! TAAAATAAAGGCAGTAAAGT+TGG - chr2_2:9576161-9576180 None:intergenic 25.0%
!!! CTTTACTGCCTTTATTTTAA+TGG + chr2_2:9576162-9576181 Msa0236640:intron 25.0%
! CAACATGTCCATTAAAATAA+AGG - chr2_2:9576173-9576192 None:intergenic 25.0%
! TTGTAATAATAGTGTACATC+AGG + chr2_2:9576686-9576705 Msa0236640:three_prime_UTR 25.0%
ACCAAAATTAAACACCAACA+AGG + chr2_2:9573420-9573439 Msa0236640:five_prime_UTR 30.0%
!! TCCTTGTTGGTGTTTAATTT+TGG - chr2_2:9573424-9573443 None:intergenic 30.0%
!! GATAATGGATAGAATAAGAG+TGG - chr2_2:9573525-9573544 None:intergenic 30.0%
GAACATTGTATTGAAAGGAA+TGG - chr2_2:9573676-9573695 None:intergenic 30.0%
TAGCAATAATACACACTCAA+TGG - chr2_2:9573978-9573997 None:intergenic 30.0%
TTTGTCGCTAAACATAGTAA+GGG + chr2_2:9574137-9574156 Msa0236640:intron 30.0%
TAACAATGAATTTGTCTGAG+TGG + chr2_2:9574239-9574258 Msa0236640:intron 30.0%
GCATATGGAGAAAATTCAAT+TGG + chr2_2:9574323-9574342 Msa0236640:intron 30.0%
GTTGTTAGGTTATCATGTTA+TGG - chr2_2:9574414-9574433 None:intergenic 30.0%
!!! TGGTTGTTTTTGTTGTTGTT+AGG - chr2_2:9574428-9574447 None:intergenic 30.0%
ATGTAGCTATCTCATTTAGT+AGG - chr2_2:9574459-9574478 None:intergenic 30.0%
TACTAAATGAGATAGCTACA+TGG + chr2_2:9574458-9574477 Msa0236640:intron 30.0%
CTTCTTTATAGGATTTCTCT+TGG + chr2_2:9574623-9574642 Msa0236640:intron 30.0%
!! TGGTGTTTTTCACTTTTATG+TGG + chr2_2:9574665-9574684 Msa0236640:intron 30.0%
!! GGTGTTTTTCACTTTTATGT+GGG + chr2_2:9574666-9574685 Msa0236640:intron 30.0%
!! AAGTAGAGTATTGTGAAAAC+TGG + chr2_2:9574770-9574789 Msa0236640:intron 30.0%
! AGAATGCGGATTGAAAATAA+AGG - chr2_2:9574852-9574871 None:intergenic 30.0%
! ACCATTTCTATGCAGATTTT+AGG + chr2_2:9574924-9574943 Msa0236640:intron 30.0%
TCCTAAAATCTGCATAGAAA+TGG - chr2_2:9574928-9574947 None:intergenic 30.0%
GAAGAGGAAAACACAATATA+TGG - chr2_2:9575035-9575054 None:intergenic 30.0%
! ATTGTGTTTTCCTCTTCTTT+TGG + chr2_2:9575038-9575057 Msa0236640:intron 30.0%
GCATAATATGATTCAAACTG+AGG + chr2_2:9575066-9575085 Msa0236640:intron 30.0%
CAATCAACACATACATATCA+TGG + chr2_2:9575104-9575123 Msa0236640:intron 30.0%
GTAAAATAGTTTCCAAACTC+AGG - chr2_2:9575325-9575344 None:intergenic 30.0%
! GCAATTTAAAATCTCACTTC+GGG + chr2_2:9575526-9575545 Msa0236640:intron 30.0%
! CAATTTAAAATCTCACTTCG+GGG + chr2_2:9575527-9575546 Msa0236640:intron 30.0%
CTTCTCATGGAAGAAAATAA+TGG - chr2_2:9575560-9575579 None:intergenic 30.0%
CAACAACAACAACAAAATAG+AGG - chr2_2:9575665-9575684 None:intergenic 30.0%
TAATTGTGTGAGAACTAAGA+TGG - chr2_2:9575955-9575974 None:intergenic 30.0%
!!! TGGGTTGATTTTTGATGATT+TGG - chr2_2:9575987-9576006 None:intergenic 30.0%
AAAATCAACCCAAATGCATA+TGG + chr2_2:9575995-9576014 Msa0236640:intron 30.0%
AAATCAACCCAAATGCATAT+GGG + chr2_2:9575996-9576015 Msa0236640:intron 30.0%
! CTTGATATTTTCTATGACCA+TGG - chr2_2:9576494-9576513 None:intergenic 30.0%
AATAAGAGTGGTGAAGGAAA+TGG - chr2_2:9573513-9573532 None:intergenic 35.0%
TATTGAAAGGAATGGTGAAC+CGG - chr2_2:9573668-9573687 None:intergenic 35.0%
GTAGCGAACATTGTATTGAA+AGG - chr2_2:9573681-9573700 None:intergenic 35.0%
TCATCTGGAGAAAGATGATT+GGG - chr2_2:9573740-9573759 None:intergenic 35.0%
TTCATCTGGAGAAAGATGAT+TGG - chr2_2:9573741-9573760 None:intergenic 35.0%
!!! CAAATTTTGCATGGTTCTGA+GGG - chr2_2:9573838-9573857 None:intergenic 35.0%
!! TCAAATTTTGCATGGTTCTG+AGG - chr2_2:9573839-9573858 None:intergenic 35.0%
CTTTGTCGCTAAACATAGTA+AGG + chr2_2:9574136-9574155 Msa0236640:intron 35.0%
TTCTCCATATGCAATAGTCA+GGG - chr2_2:9574315-9574334 None:intergenic 35.0%
TTTCTCCATATGCAATAGTC+AGG - chr2_2:9574316-9574335 None:intergenic 35.0%
ATGGAGAAAATTCAATTGGG+AGG + chr2_2:9574327-9574346 Msa0236640:intron 35.0%
TGGAGAAAATTCAATTGGGA+GGG + chr2_2:9574328-9574347 Msa0236640:intron 35.0%
AGCTATCTCATTTAGTAGGA+TGG - chr2_2:9574455-9574474 None:intergenic 35.0%
! CAATGAGTTGAACCCAAATA+TGG - chr2_2:9574515-9574534 None:intergenic 35.0%
GTTGAGTGAAAAACAGTTTG+TGG + chr2_2:9574645-9574664 Msa0236640:intron 35.0%
!! TAGAGTATTGTGAAAACTGG+TGG + chr2_2:9574773-9574792 Msa0236640:intron 35.0%
TTCAGGTAACAAATACACCA+TGG + chr2_2:9574813-9574832 Msa0236640:intron 35.0%
TCAGGTAACAAATACACCAT+GGG + chr2_2:9574814-9574833 Msa0236640:intron 35.0%
! TTTGCATGTCAGTCCTTTTA+TGG + chr2_2:9574889-9574908 Msa0236640:CDS 35.0%
TATGCAATGACCAAAAGAAG+AGG - chr2_2:9575051-9575070 None:intergenic 35.0%
CAACACATACATATCATGGT+TGG + chr2_2:9575108-9575127 Msa0236640:intron 35.0%
AACTATGACAGGATATGCTT+GGG + chr2_2:9575236-9575255 Msa0236640:intron 35.0%
AATATCAAAGCAAGTGATCC+TGG + chr2_2:9575265-9575284 Msa0236640:CDS 35.0%
! GATATGCTAAGATTTTCTCC+AGG - chr2_2:9575286-9575305 None:intergenic 35.0%
GAAATACCAGAACAACACTT+TGG + chr2_2:9575604-9575623 Msa0236640:intron 35.0%
AGCTTCAAAATGTGTAACTG+GGG - chr2_2:9575741-9575760 None:intergenic 35.0%
CAGCTTCAAAATGTGTAACT+GGG - chr2_2:9575742-9575761 None:intergenic 35.0%
TCAGCTTCAAAATGTGTAAC+TGG - chr2_2:9575743-9575762 None:intergenic 35.0%
AAAACCGAATGACCAAATTC+AGG + chr2_2:9576032-9576051 Msa0236640:intron 35.0%
AAACCGAATGACCAAATTCA+GGG + chr2_2:9576033-9576052 Msa0236640:intron 35.0%
! TTTAATGGACATGTTGCCTT+TGG + chr2_2:9576177-9576196 Msa0236640:intron 35.0%
!! AAAGGTTGATGTTGTTCCAA+AGG - chr2_2:9576196-9576215 None:intergenic 35.0%
! GGAACAACATCAACCTTTTT+AGG + chr2_2:9576198-9576217 Msa0236640:intron 35.0%
TCCTCCAGGCTATAAAATTA+TGG + chr2_2:9576282-9576301 Msa0236640:intron 35.0%
! ACCATAATTTTATAGCCTGG+AGG - chr2_2:9576286-9576305 None:intergenic 35.0%
TCCAGGCTATAAAATTATGG+TGG + chr2_2:9576285-9576304 Msa0236640:intron 35.0%
! TCCACCATAATTTTATAGCC+TGG - chr2_2:9576289-9576308 None:intergenic 35.0%
TATAACGAACATTCCCAAAC+TGG + chr2_2:9576534-9576553 Msa0236640:three_prime_UTR 35.0%
GTTACCATCATTACCAGTTT+GGG - chr2_2:9576550-9576569 None:intergenic 35.0%
GAATACAAAGTCAACCTACA+TGG - chr2_2:9576572-9576591 None:intergenic 35.0%
! TGTAGGTTGACTTTGTATTC+TGG + chr2_2:9576572-9576591 Msa0236640:three_prime_UTR 35.0%
TATGTCCACATAGTGAAATG+TGG + chr2_2:9576634-9576653 Msa0236640:three_prime_UTR 35.0%
GGATAGAATAAGAGTGGTGA+AGG - chr2_2:9573519-9573538 None:intergenic 40.0%
GTACCTTCGTAGAGAGATAT+GGG - chr2_2:9573623-9573642 None:intergenic 40.0%
AGTACCTTCGTAGAGAGATA+TGG - chr2_2:9573624-9573643 None:intergenic 40.0%
ATTGAAAGGAATGGTGAACC+GGG - chr2_2:9573667-9573686 None:intergenic 40.0%
!! GTCCATTGGTATCGGTAATT+TGG - chr2_2:9573769-9573788 None:intergenic 40.0%
TTACATGGGTCCATTGGTAT+CGG - chr2_2:9573777-9573796 None:intergenic 40.0%
AAACACTTACATGGGTCCAT+TGG - chr2_2:9573783-9573802 None:intergenic 40.0%
ATTGACAATTCCAGCTAGTG+TGG + chr2_2:9573938-9573957 Msa0236640:CDS 40.0%
TTGACAATTCCAGCTAGTGT+GGG + chr2_2:9573939-9573958 Msa0236640:CDS 40.0%
! TTTGAAGAAGTGCATTGCTG+AGG + chr2_2:9574022-9574041 Msa0236640:CDS 40.0%
ATGAATTTGTCTGAGTGGTG+AGG + chr2_2:9574244-9574263 Msa0236640:intron 40.0%
TGAATTTGTCTGAGTGGTGA+GGG + chr2_2:9574245-9574264 Msa0236640:intron 40.0%
TGATCCCTGACTATTGCATA+TGG + chr2_2:9574308-9574327 Msa0236640:intron 40.0%
GGAGAAAATTCAATTGGGAG+GGG + chr2_2:9574329-9574348 Msa0236640:intron 40.0%
GAGAAAATTCAATTGGGAGG+GGG + chr2_2:9574330-9574349 Msa0236640:intron 40.0%
TCATTTAGTAGGATGGAGCT+TGG - chr2_2:9574448-9574467 None:intergenic 40.0%
GAGTCGAACATGGTTTATGA+TGG - chr2_2:9574586-9574605 None:intergenic 40.0%
TGACAAAATGGAGTCGAACA+TGG - chr2_2:9574596-9574615 None:intergenic 40.0%
TTGGCTACTAGATCAGAATG+CGG - chr2_2:9574866-9574885 None:intergenic 40.0%
AGCATATCCTGTCATAGTTC+AGG - chr2_2:9575235-9575254 None:intergenic 40.0%
GAACTATGACAGGATATGCT+TGG + chr2_2:9575235-9575254 Msa0236640:intron 40.0%
!! CTTTTGGTTGATGCCTCATA+AGG + chr2_2:9575402-9575421 Msa0236640:CDS 40.0%
ATCCATACAGCAACCTTATG+AGG - chr2_2:9575418-9575437 None:intergenic 40.0%
AGGTTGCTGTATGGATATAC+TGG + chr2_2:9575422-9575441 Msa0236640:CDS 40.0%
!! TACACACCAAAGTGTTGTTC+TGG - chr2_2:9575613-9575632 None:intergenic 40.0%
AAATTGAGGGACCAAAATCG+TGG - chr2_2:9575699-9575718 None:intergenic 40.0%
GCTTCAAAATGTGTAACTGG+GGG - chr2_2:9575740-9575759 None:intergenic 40.0%
GATCCCTGAATTTGGTCATT+CGG - chr2_2:9576039-9576058 None:intergenic 40.0%
GATAGAAAACTGCAGTGTTG+TGG + chr2_2:9576377-9576396 Msa0236640:CDS 40.0%
CTTCGTCAGCTAAATAATCC+TGG - chr2_2:9576427-9576446 None:intergenic 40.0%
!! TTAGGTGGATTGACGCTAAA+TGG + chr2_2:9576468-9576487 Msa0236640:CDS 40.0%
! CATTCCCAAACTGGTAATGA+TGG + chr2_2:9576543-9576562 Msa0236640:three_prime_UTR 40.0%
GGTTACCATCATTACCAGTT+TGG - chr2_2:9576551-9576570 None:intergenic 40.0%
GGTAATGATGGTAACCATGT+AGG + chr2_2:9576555-9576574 Msa0236640:three_prime_UTR 40.0%
TCGATCCACATTTCACTATG+TGG - chr2_2:9576642-9576661 None:intergenic 40.0%
CGCGTGAAAAGGAAGGATAA+TGG - chr2_2:9573540-9573559 None:intergenic 45.0%
GTCATTGGAAGAGGAAGAAG+CGG - chr2_2:9573591-9573610 None:intergenic 45.0%
GCTTCTTCCTCTTCCAATGA+CGG + chr2_2:9573590-9573609 Msa0236640:CDS 45.0%
GAACCCATATCTCTCTACGA+AGG + chr2_2:9573617-9573636 Msa0236640:CDS 45.0%
TCTGGAGAAAGATGATTGGG+TGG - chr2_2:9573737-9573756 None:intergenic 45.0%
GTAATTTGGCGAGCTTCATC+TGG - chr2_2:9573755-9573774 None:intergenic 45.0%
CGCCAAATTACCGATACCAA+TGG + chr2_2:9573764-9573783 Msa0236640:CDS 45.0%
TGTTCATATCCCACACTAGC+TGG - chr2_2:9573951-9573970 None:intergenic 45.0%
AGTTGAGCCACTTAAGCAAG+TGG + chr2_2:9574276-9574295 Msa0236640:intron 45.0%
CAAAGTTTCGCACACATGGT+GGG - chr2_2:9574388-9574407 None:intergenic 45.0%
ACAAAGTTTCGCACACATGG+TGG - chr2_2:9574389-9574408 None:intergenic 45.0%
AAGGTTACTCTTTCAGCCCA+TGG - chr2_2:9574833-9574852 None:intergenic 45.0%
AGGACTGACATGCAAAGCTT+TGG - chr2_2:9574885-9574904 None:intergenic 45.0%
GTTACTTCCTCAGTTTCGCT+CGG + chr2_2:9575008-9575027 Msa0236640:intron 45.0%
! CCTGTCATAGTTCAGGTTCA+GGG - chr2_2:9575228-9575247 None:intergenic 45.0%
! TCCTGTCATAGTTCAGGTTC+AGG - chr2_2:9575229-9575248 None:intergenic 45.0%
TCAGTTCATCACCCTGAGTT+TGG + chr2_2:9575310-9575329 Msa0236640:CDS 45.0%
TGATGTCGAGCACAACTTGT+TGG - chr2_2:9575362-9575381 None:intergenic 45.0%
! CGGATCACGCAGTTTTCTTT+TGG + chr2_2:9575386-9575405 Msa0236640:CDS 45.0%
TGCCTCATAAGGTTGCTGTA+TGG + chr2_2:9575413-9575432 Msa0236640:CDS 45.0%
GTCTGCTCCCATATGCATTT+GGG - chr2_2:9576006-9576025 None:intergenic 45.0%
TGTCTGCTCCCATATGCATT+TGG - chr2_2:9576007-9576026 None:intergenic 45.0%
GGAGGACGAATGGACATAAT+GGG - chr2_2:9576268-9576287 None:intergenic 45.0%
TGGAGGACGAATGGACATAA+TGG - chr2_2:9576269-9576288 None:intergenic 45.0%
ATTATGTCCATTCGTCCTCC+AGG + chr2_2:9576268-9576287 Msa0236640:intron 45.0%
TTTATAGCCTGGAGGACGAA+TGG - chr2_2:9576278-9576297 None:intergenic 45.0%
ACGTGGGAATGGCATATCTA+GGG - chr2_2:9576334-9576353 None:intergenic 45.0%
TACGTGGGAATGGCATATCT+AGG - chr2_2:9576335-9576354 None:intergenic 45.0%
ATATGCCATTCCCACGTACA+GGG + chr2_2:9576337-9576356 Msa0236640:CDS 45.0%
TGTGGATTCAGTCCACAAAG+AGG + chr2_2:9576395-9576414 Msa0236640:CDS 45.0%
! TTCCTTTTCACGCGCTACTG+CGG + chr2_2:9573546-9573565 Msa0236640:CDS 50.0%
TTCAGCTCCGTCATTGGAAG+AGG - chr2_2:9573600-9573619 None:intergenic 50.0%
TATGGGTTCAGCTCCGTCAT+TGG - chr2_2:9573606-9573625 None:intergenic 50.0%
AGCCACTTAAGCAAGTGGTC+AGG + chr2_2:9574281-9574300 Msa0236640:intron 50.0%
GCCACTTAAGCAAGTGGTCA+GGG + chr2_2:9574282-9574301 Msa0236640:intron 50.0%
CCACTTAAGCAAGTGGTCAG+GGG + chr2_2:9574283-9574302 Msa0236640:intron 50.0%
GGCACAAAGTTTCGCACACA+TGG - chr2_2:9574392-9574411 None:intergenic 50.0%
ATATGGACCGAGCGAAACTG+AGG - chr2_2:9575018-9575037 None:intergenic 50.0%
CCCTGAACCTGAACTATGAC+AGG + chr2_2:9575225-9575244 Msa0236640:intron 50.0%
GACAGGATATGCTTGGGAGT+TGG + chr2_2:9575242-9575261 Msa0236640:intron 50.0%
GTTGTGCTCGACATCAGCAT+CGG + chr2_2:9575366-9575385 Msa0236640:CDS 50.0%
GATATGCCATTCCCACGTAC+AGG + chr2_2:9576336-9576355 Msa0236640:CDS 50.0%
AAAGCTTCGTCCCTGTACGT+GGG - chr2_2:9576350-9576369 None:intergenic 50.0%
TAAAGCTTCGTCCCTGTACG+TGG - chr2_2:9576351-9576370 None:intergenic 50.0%
TCCACAAAGAGGAAGCAACC+AGG + chr2_2:9576406-9576425 Msa0236640:CDS 50.0%
TCCTGGTTGCTTCCTCTTTG+TGG - chr2_2:9576410-9576429 None:intergenic 50.0%
ACGAAGCAAGTCCTAGAGAC+AGG + chr2_2:9576441-9576460 Msa0236640:CDS 50.0%
AAGCAAGTCCTAGAGACAGG+TGG + chr2_2:9576444-9576463 Msa0236640:CDS 50.0%
GTCCTAGAGACAGGTGGTTT+AGG + chr2_2:9576450-9576469 Msa0236640:CDS 50.0%
CACCTAAACCACCTGTCTCT+AGG - chr2_2:9576455-9576474 None:intergenic 50.0%
CTAGAGACAGGTGGTTTAGG+TGG + chr2_2:9576453-9576472 Msa0236640:CDS 50.0%
GGATTGACGCTAAATGGCCA+TGG + chr2_2:9576474-9576493 Msa0236640:CDS 50.0%
GCAGTAGCGCGTGAAAAGGA+AGG - chr2_2:9573547-9573566 None:intergenic 55.0%
GAAAGGAATGGTGAACCGGG+TGG - chr2_2:9573664-9573683 None:intergenic 55.0%
CCCCTGACCACTTGCTTAAG+TGG - chr2_2:9574286-9574305 None:intergenic 55.0%
GAGAACCCACCTTGTGTGGT+TGG + chr2_2:9574352-9574371 Msa0236640:intron 55.0%
ACCCACCTTGTGTGGTTGGA+AGG + chr2_2:9574356-9574375 Msa0236640:intron 55.0%
CCCTTCCAACCACACAAGGT+GGG - chr2_2:9574360-9574379 None:intergenic 55.0%
CCCACCTTGTGTGGTTGGAA+GGG + chr2_2:9574357-9574376 Msa0236640:intron 55.0%
CCACCTTGTGTGGTTGGAAG+GGG + chr2_2:9574358-9574377 Msa0236640:intron 55.0%
TCTCCCCTTCCAACCACACA+AGG - chr2_2:9574364-9574383 None:intergenic 55.0%
TTCGTCCCTGTACGTGGGAA+TGG - chr2_2:9576345-9576364 None:intergenic 55.0%
AGGAATGGTGAACCGGGTGG+CGG - chr2_2:9573661-9573680 None:intergenic 60.0%
AGATGATTGGGTGGCGCGTG+AGG - chr2_2:9573728-9573747 None:intergenic 60.0%
CCCCTTCCAACCACACAAGG+TGG - chr2_2:9574361-9574380 None:intergenic 60.0%
CGCCGCAGTAGCGCGTGAAA+AGG - chr2_2:9573551-9573570 None:intergenic 65.0%
AGAGGAAGAAGCGGCGCGTG+AGG - chr2_2:9573582-9573601 None:intergenic 65.0%
GGGGGAGAACCCACCTTGTG+TGG + chr2_2:9574348-9574367 Msa0236640:intron 65.0%
CTACCATCAGCGCCGCCACC+CGG + chr2_2:9573646-9573665 Msa0236640:CDS 70.0%
TGGGTGGCGCGTGAGGTGCA+CGG - chr2_2:9573721-9573740 None:intergenic 70.0%
! GAACCGGGTGGCGGCGCTGA+TGG - chr2_2:9573652-9573671 None:intergenic 75.0%
GCGCGTGAGGTGCACGGTCG+AGG - chr2_2:9573715-9573734 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 9573377 9576780 9573377 ID=Msa0236640;Name=Msa0236640
chr2_2 mRNA 9573377 9576780 9573377 ID=Msa0236640-mRNA-1;Parent=Msa0236640;Name=Msa0236640-mRNA-1;_AED=0.07;_eAED=0.07;_QI=99|1|1|1|1|1|5|278|311
chr2_2 exon 9573377 9573792 9573377 ID=Msa0236640-mRNA-1:exon:4124;Parent=Msa0236640-mRNA-1
chr2_2 exon 9573932 9574043 9573932 ID=Msa0236640-mRNA-1:exon:4125;Parent=Msa0236640-mRNA-1
chr2_2 exon 9574818 9574910 9574818 ID=Msa0236640-mRNA-1:exon:4126;Parent=Msa0236640-mRNA-1
chr2_2 exon 9575247 9575447 9575247 ID=Msa0236640-mRNA-1:exon:4127;Parent=Msa0236640-mRNA-1
chr2_2 exon 9576290 9576780 9576290 ID=Msa0236640-mRNA-1:exon:4128;Parent=Msa0236640-mRNA-1
chr2_2 five_prime_UTR 9573377 9573475 9573377 ID=Msa0236640-mRNA-1:five_prime_utr;Parent=Msa0236640-mRNA-1
chr2_2 CDS 9573476 9573792 9573476 ID=Msa0236640-mRNA-1:cds;Parent=Msa0236640-mRNA-1
chr2_2 CDS 9573932 9574043 9573932 ID=Msa0236640-mRNA-1:cds;Parent=Msa0236640-mRNA-1
chr2_2 CDS 9574818 9574910 9574818 ID=Msa0236640-mRNA-1:cds;Parent=Msa0236640-mRNA-1
chr2_2 CDS 9575247 9575447 9575247 ID=Msa0236640-mRNA-1:cds;Parent=Msa0236640-mRNA-1
chr2_2 CDS 9576290 9576502 9576290 ID=Msa0236640-mRNA-1:cds;Parent=Msa0236640-mRNA-1
chr2_2 three_prime_UTR 9576503 9576780 9576503 ID=Msa0236640-mRNA-1:three_prime_utr;Parent=Msa0236640-mRNA-1
Gene Sequence

>Msa0236640

ATGGAATTAATTTATCTTCTATGCTCTATAGTCTCCATTTCCTTCACCACTCTTATTCTATCCATTATCCTTCCTTTTCACGCGCTACTGCGGCGTTTAGTAACCTCACGCGCCGCTTCTTCCTCTTCCAATGACGGAGCTGAACCCATATCTCTCTACGAAGGTACTGTCTACCATCAGCGCCGCCACCCGGTTCACCATTCCTTTCAATACAATGTTCGCTACGCACTTATTGACCTCGACCGTGCACCTCACGCGCCACCCAATCATCTTTCTCCAGATGAAGCTCGCCAAATTACCGATACCAATGGACCCATTTTGCTATTGACAATTCCAGCTAGTGTGGGATATGAACAGAATCCATTGAGTGTGTATTATTGCTATGATGTTGAAGACTCTGATACACGTTTGAAGAAGTGCATTGCTGAGGTAACAAATACACCATGGGCTGAAAGAGTAACCTTTATTTTCAATCCGCATTCTGATCTAGTAGCCAAAGCTTTGCATGTCAGTCCTTTTATGGATATGCTTGGGAGTTGGAATATCAAAGCAAGTGATCCTGGAGAAAATCTTAGCATATCAATTTCAGTTCATCACCCTGAGTTTGGAAACTATTTTACTGCTAGTCTGAGAGCCAACAAGTTGTGCTCGACATCAGCATCGGATCACGCAGTTTTCTTTTGGTTGATGCCTCATAAGGTTGCTGTATGGATATACTGGCATGCTATAAAATTATGGTGGAAGAATGTGAAATTTATACAACACCCTAGATATGCCATTCCCACGTACAGGGACGAAGCTTTAATACGAGATAGAAAACTGCAGTGTTGTGGATTCAGTCCACAAAGAGGAAGCAACCAGGATTATTTAGCTGACGAAGCAAGTCCTAGAGACAGGTGGTTTAGGTGGATTGACGCTAAATGGCCATGGTCATAG

Protein sequence

>Msa0236640

MELIYLLCSIVSISFTTLILSIILPFHALLRRLVTSRAASSSSNDGAEPISLYEGTVYHQRRHPVHHSFQYNVRYALIDLDRAPHAPPNHLSPDEARQITDTNGPILLLTIPASVGYEQNPLSVYYCYDVEDSDTRLKKCIAEVTNTPWAERVTFIFNPHSDLVAKALHVSPFMDMLGSWNIKASDPGENLSISISVHHPEFGNYFTASLRANKLCSTSASDHAVFFWLMPHKVAVWIYWHAIKLWWKNVKFIQHPRYAIPTYRDEALIRDRKLQCCGFSPQRGSNQDYLADEASPRDRWFRWIDAKWPWS*